Query 029184
Match_columns 197
No_of_seqs 108 out of 218
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 14:19:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029184.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029184hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2p7tc1 f.14.1.1 (C:86-119) Po 31.8 30 0.0022 18.7 3.5 22 13-34 6-27 (34)
2 d2pila_ d.24.1.1 (A:) Pilin Gc 10.0 81 0.0059 20.4 2.5 16 13-28 6-21 (158)
3 d2axtm1 f.23.35.1 (M:1-36) Pho 9.7 1.5E+02 0.011 16.2 3.7 20 149-168 8-27 (36)
4 d2q7ra1 f.56.1.1 (A:1-139) Ara 4.2 1.6E+02 0.012 20.3 1.6 48 10-58 8-58 (139)
5 d1vk6a4 g.41.14.1 (A:97-125) N 3.9 84 0.0061 16.5 -0.2 12 82-93 1-12 (29)
6 d1ppjd2 f.23.11.1 (D:196-241) 3.8 3.4E+02 0.025 15.2 2.6 15 154-168 13-27 (46)
7 d1m0ga_ g.46.1.1 (A:) Metallot 3.4 2.3E+02 0.017 14.5 1.3 10 80-89 14-23 (30)
8 d1j2oa2 g.39.1.3 (A:31-63) Rho 3.2 1.9E+02 0.014 15.4 0.8 8 82-89 2-9 (33)
9 d1a7ia1 g.39.1.3 (A:8-35) Cyst 3.1 1.7E+02 0.013 14.9 0.6 8 82-89 2-9 (28)
10 d1dl0a_ g.3.6.2 (A:) J-atracot 3.0 1.2E+02 0.0086 16.4 -0.2 7 81-87 12-18 (37)
No 1
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=31.85 E-value=30 Score=18.75 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 029184 13 VHILVVILSLVAFGFSIAAERR 34 (197)
Q Consensus 13 v~~~v~~lgliAfiLgi~AE~~ 34 (197)
+.++|.+-|+.+|.|-++|-.+
T Consensus 6 vavvvmvagits~glv~aa~at 27 (34)
T d2p7tc1 6 VAVVVMVAGITSFGLVTAALAT 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeccchhhhHHHHHHH
Confidence 5667888899999998887543
No 2
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=9.97 E-value=81 Score=20.40 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 029184 13 VHILVVILSLVAFGFS 28 (197)
Q Consensus 13 v~~~v~~lgliAfiLg 28 (197)
+.+++.++|++|.+.-
T Consensus 6 LlVViaIIgILaaia~ 21 (158)
T d2pila_ 6 LMIVIAIVGILAAVAL 21 (158)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566777777777654
No 3
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.67 E-value=1.5e+02 Score=16.17 Aligned_cols=20 Identities=30% Similarity=0.635 Sum_probs=17.2
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 029184 149 FIAAAVFVVATMILNVYYYM 168 (197)
Q Consensus 149 Fa~aAvl~l~t~~~~i~yYv 168 (197)
|-+.+.|.++-+.|=++.|+
T Consensus 8 ~iAt~LFilvPt~FLliLyv 27 (36)
T d2axtm1 8 LIATALFVLVPSVFLIILYV 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhe
Confidence 56778889999999999998
No 4
>d2q7ra1 f.56.1.1 (A:1-139) Arachidonate 5-lipoxygenase-activating protein, FLAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.25 E-value=1.6e+02 Score=20.31 Aligned_cols=48 Identities=21% Similarity=0.358 Sum_probs=24.4
Q ss_pred hhhHHHHHHHHHHHH---HHHHHHHhhhcccceeccCCCCCCCceeecCCCc
Q 029184 10 STLVHILVVILSLVA---FGFSIAAERRRSTGHMMPVPDQSNATYCVYSSDV 58 (197)
Q Consensus 10 ~~~v~~~v~~lgliA---fiLgi~AE~~r~~~~~~~~~~~~~~~~C~Yps~~ 58 (197)
.+++..+|.++.++- +.+-+..+++|.|.+.-....| +..+|.++...
T Consensus 8 ~~vl~~~vt~l~~~~~~~ls~~Vg~aR~k~~v~~p~~~g~-~~f~ra~RaH~ 58 (139)
T d2q7ra1 8 NVVLLAIVTLISVVQNGFFAHKVEHESRTQNGRSFQRTGT-LAFERVYTANQ 58 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCSCCC-HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC-HHHHHHHHHHh
Confidence 344455555555543 4444666666666532221112 45678776553
No 5
>d1vk6a4 g.41.14.1 (A:97-125) NADH pyrophosphatase intervening domain {Escherichia coli [TaxId: 562]}
Probab=3.92 E-value=84 Score=16.48 Aligned_cols=12 Identities=25% Similarity=0.553 Sum_probs=7.3
Q ss_pred cccccCCCCCCC
Q 029184 82 KCMCFGRPLAPG 93 (197)
Q Consensus 82 ~C~Cc~~~~~~~ 93 (197)
.|.+||.+..+|
T Consensus 1 fCGYCGh~Mh~s 12 (29)
T d1vk6a4 1 YCGYCGHEMYPS 12 (29)
T ss_dssp BCTTTCCBEEEC
T ss_pred CccccCCccccc
Confidence 377787665443
No 6
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.80 E-value=3.4e+02 Score=15.22 Aligned_cols=15 Identities=20% Similarity=0.545 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHH
Q 029184 154 VFVVATMILNVYYYM 168 (197)
Q Consensus 154 vl~l~t~~~~i~yYv 168 (197)
++.+++.+..+.||.
T Consensus 13 v~~~l~~l~~l~yy~ 27 (46)
T d1ppjd2 13 MLLMMGLLLPLVYAM 27 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555566666665
No 7
>d1m0ga_ g.46.1.1 (A:) Metallothionein {Black rockcod (Notothenia coriiceps) [TaxId: 8208]}
Probab=3.43 E-value=2.3e+02 Score=14.47 Aligned_cols=10 Identities=30% Similarity=1.039 Sum_probs=5.4
Q ss_pred HhcccccCCC
Q 029184 80 VTKCMCFGRP 89 (197)
Q Consensus 80 a~~C~Cc~~~ 89 (197)
++||.|.++.
T Consensus 14 asgcvckgkt 23 (30)
T d1m0ga_ 14 ASGCVCKGKT 23 (30)
T ss_dssp HTSCGGGTSS
T ss_pred ccCceecCCc
Confidence 4556665543
No 8
>d1j2oa2 g.39.1.3 (A:31-63) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.18 E-value=1.9e+02 Score=15.39 Aligned_cols=8 Identities=25% Similarity=0.409 Sum_probs=5.5
Q ss_pred cccccCCC
Q 029184 82 KCMCFGRP 89 (197)
Q Consensus 82 ~C~Cc~~~ 89 (197)
.|.||+-+
T Consensus 2 kC~cC~cR 9 (33)
T d1j2oa2 2 SCDLCGCR 9 (33)
T ss_dssp CCSSSCSC
T ss_pred cccccccc
Confidence 57888754
No 9
>d1a7ia1 g.39.1.3 (A:8-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=3.14 E-value=1.7e+02 Score=14.94 Aligned_cols=8 Identities=50% Similarity=0.928 Sum_probs=4.9
Q ss_pred cccccCCC
Q 029184 82 KCMCFGRP 89 (197)
Q Consensus 82 ~C~Cc~~~ 89 (197)
+|.||.+.
T Consensus 2 kcg~c~kt 9 (28)
T d1a7ia1 2 KCGACGRT 9 (28)
T ss_dssp BCSSSCCB
T ss_pred ccccccce
Confidence 46777653
No 10
>d1dl0a_ g.3.6.2 (A:) J-atracotoxin-hv1c {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=3.01 E-value=1.2e+02 Score=16.37 Aligned_cols=7 Identities=29% Similarity=0.761 Sum_probs=4.4
Q ss_pred hcccccC
Q 029184 81 TKCMCFG 87 (197)
Q Consensus 81 ~~C~Cc~ 87 (197)
..|+||.
T Consensus 12 accpccp 18 (37)
T d1dl0a_ 12 ACCPCCP 18 (37)
T ss_dssp SSCCCCT
T ss_pred cccCCCC
Confidence 3567874
Done!