BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029185
(197 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q08891|FACR2_ARATH Fatty acyl-CoA reductase 2 OS=Arabidopsis thaliana GN=FAR2 PE=2
SV=2
Length = 616
Score = 189 bits (479), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 99/181 (54%), Positives = 126/181 (69%), Gaps = 9/181 (4%)
Query: 1 MVVNATLAAIAKHGQVVIQ-KPEVKVYQIASSVTNPLVTKYLMSLLHEHFDSSPFLDSKG 59
MVVNATLAAIAKHG + +PE+ VYQIASS NPLV + L LL+ H+ +SP +DSKG
Sbjct: 433 MVVNATLAAIAKHGMAMSDPEPEINVYQIASSAINPLVFEDLAELLYNHYKTSPCMDSKG 492
Query: 60 SPIRVPLMKLFTSMEDFSAHLLDGAMQRSIIGS---SNGEQLAQKQYEILRR-----KEF 111
PI V LMKLF S++DFS HL A +RS + S S ++ QK I ++ K
Sbjct: 493 DPIMVRLMKLFNSVDDFSDHLWRDAQERSGLMSGMSSVDSKMMQKLKFICKKSVEQAKHL 552
Query: 112 ANVYLPYGFYAGRFDCSNTMGLMQIMNEEEKKKFGFDMGSIDWKHYITNVHVPGLMRNVM 171
A +Y PY FY GRFD SNT LM+ M+E+EK++FGFD+GSI+W YITNVH+PGL R+V+
Sbjct: 553 ATIYEPYTFYGGRFDNSNTQRLMENMSEDEKREFGFDVGSINWTDYITNVHIPGLRRHVL 612
Query: 172 K 172
K
Sbjct: 613 K 613
>sp|B9TSP7|FACR6_ARATH Fatty acyl-CoA reductase 6, chloroplastic OS=Arabidopsis thaliana
GN=FAR6 PE=2 SV=1
Length = 548
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 103/179 (57%), Gaps = 8/179 (4%)
Query: 1 MVVNATLAAIAKHGQVVIQKPEVKVYQIASSV-TNPLVTKYLMSLLHEHFDSSPFLDSKG 59
MV NA +AA+AKHG V PE KVY + SS NP+ L+ L H+H P ++
Sbjct: 376 MVANAAIAAMAKHGCGV---PEFKVYNLTSSSHVNPMRAGKLIDLSHQHLCDFPLEET-- 430
Query: 60 SPIRVPLMKLFTSMEDFSAHLLDGAMQRSIIGSSNGEQLAQKQYEILRR-KEFANVYLPY 118
I + MK+ +S+E F++ L + +++ + + G L+ K L A Y PY
Sbjct: 431 -VIDLEHMKIHSSLEGFTSALSNTIIKQERVIDNEGGGLSTKGKRKLNYFVSLAKTYEPY 489
Query: 119 GFYAGRFDCSNTMGLMQIMNEEEKKKFGFDMGSIDWKHYITNVHVPGLMRNVMKEKRGE 177
F+ RFD +NT L+Q M+ EEKK FGFD+ IDW+HYI NVH+PGL + + +K+ E
Sbjct: 490 TFFQARFDNTNTTSLIQEMSMEEKKTFGFDIKGIDWEHYIVNVHLPGLKKEFLSKKKTE 548
>sp|Q39152|FACR1_ARATH Fatty acyl-CoA reductase 1 OS=Arabidopsis thaliana GN=FAR1 PE=2
SV=1
Length = 491
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 86/185 (46%), Gaps = 16/185 (8%)
Query: 1 MVVNATLAAIAKH-GQVVIQKPEVKVYQIASSVTNPLVTKYLMSLLHEHFDSSPFLDSKG 59
MVVNA +AA H G IQ +Y + SS NP+ L +F P + G
Sbjct: 311 MVVNAMVAAATAHSGDTGIQA----IYHVGSSCKNPVTFGQLHDFTARYFAKRPLIGRNG 366
Query: 60 SPIRVPLMKLFTSMEDFSAHL-----LDGAMQRSI---IGSSNGEQLAQKQYEILRRKEF 111
SPI V + ++M FS ++ L + R I S+G+ + +I
Sbjct: 367 SPIIVVKGTILSTMAQFSLYMTLRYKLPLQILRLINIVYPWSHGDNYSDLSRKIKLAMRL 426
Query: 112 ANVYLPYGFYAGRFDCSNTMGLMQIMNEEEKK---KFGFDMGSIDWKHYITNVHVPGLMR 168
+Y PY + G FD NT L E K+ F FD SIDW +YITN H+PGL+
Sbjct: 427 VELYQPYLLFKGIFDDLNTERLRMKRKENIKELDGSFEFDPKSIDWDNYITNTHIPGLIT 486
Query: 169 NVMKE 173
+V+K+
Sbjct: 487 HVLKQ 491
>sp|Q9XGY7|FAR_SIMCH Alcohol-forming fatty acyl-CoA reductase OS=Simmondsia chinensis
PE=1 SV=1
Length = 493
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 12/181 (6%)
Query: 1 MVVNATLAAIAKHGQVVIQKPEVKVYQIASSVTNPLVTKYLMSLLHEHFDSSPFLDSKGS 60
MVVNAT+ A+ H +P Y + SS NP+ L + H +F +P+++ +
Sbjct: 314 MVVNATIVAMVAHANQRYVEP--VTYHVGSSAANPMKLSALPEMAHRYFTKNPWINPDRN 371
Query: 61 PIRVPLMKLFTSMEDFSAHL-LDGAMQRSIIGSSNG--EQLAQKQYEILRRK-----EFA 112
P+ V +F+S F +L L+ + ++ +N Q + +Y L+RK
Sbjct: 372 PVHVGRAMVFSSFSTFHLYLTLNFLLPLKVLEIANTIFCQWFKGKYMDLKRKTRLLLRLV 431
Query: 113 NVYLPYGFYAGRFDCSNTMGLMQIMNEE--EKKKFGFDMGSIDWKHYITNVHVPGLMRNV 170
++Y PY F+ G FD NT L E E F FD +I+W+ Y H PG++ +V
Sbjct: 432 DIYKPYLFFQGIFDDMNTEKLRIAAKESIVEADMFYFDPRAINWEDYFLKTHFPGVVEHV 491
Query: 171 M 171
+
Sbjct: 492 L 492
>sp|Q9LXN3|FACR4_ARATH Probable fatty acyl-CoA reductase 4 OS=Arabidopsis thaliana GN=FAR4
PE=2 SV=1
Length = 493
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 16/185 (8%)
Query: 1 MVVNATLAAIAKH-GQVVIQKPEVKVYQIASSVTNPLVTKYLMSLLHEHFDSSPFLDSKG 59
MV NA + A A H G++ Q VY + SS NP+ + + L +F +P + G
Sbjct: 313 MVANAMVTAAAIHAGKLGSQT----VYHVGSSCKNPITFEQIHDLAASYFTKNPLVRRDG 368
Query: 60 SPIRVPLMKLFTSMEDFSAHL-----LDGAMQR---SIIGSSNGEQLAQKQYEILRRKEF 111
S I V + ++M FS ++ L M R I NG + +I
Sbjct: 369 SSILVSKGTILSTMAQFSFYMTLRYKLPLQMLRLIYVIYPWWNGNKYKDIDRKIKLAMRL 428
Query: 112 ANVYLPYGFYAGRFDCSNTMGLMQIMNEEEKKKFG---FDMGSIDWKHYITNVHVPGLMR 168
++Y PY + G FD +NT L E K+ +G FD SIDW+ Y+T +H+PGL+
Sbjct: 429 VDLYRPYVLFKGIFDDTNTEKLRLKRKEINKEMYGLFEFDPKSIDWEDYMTTIHIPGLIT 488
Query: 169 NVMKE 173
V+K+
Sbjct: 489 YVLKK 493
>sp|Q93ZB9|FACR3_ARATH Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana GN=FAR3 PE=2
SV=1
Length = 493
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 22/184 (11%)
Query: 1 MVVNATLAAIAKHGQVVIQKPEVKVYQIASSVTNPLVTKYLMSLLHEHFDSSPFLDSKGS 60
MVVN+ L ++A K E +Y + SS+ NP+ L + +F P+ + +G
Sbjct: 317 MVVNSILVSMAAQAG----KQEEIIYHVGSSLRNPMKNSKFPELAYRYFSIKPWTNKEGK 372
Query: 61 PIRVPLMKLFTSMEDFSAHL-------LDGAMQRSIIGSSNGEQLAQKQYEILRRK---- 109
++V +++ +SM F ++ L G +II +L +K+++ +K
Sbjct: 373 VVKVGAIEILSSMRSFHRYMTIRYLIALKGLELVNIILC----KLFEKEFQYFNKKINFI 428
Query: 110 -EFANVYLPYGFYAGRFDCSNTMGLMQIMNEE--EKKKFGFDMGSIDWKHYITNVHVPGL 166
++Y PY F+ G FD SNT L +++++ E + F FD +DW Y N HV GL
Sbjct: 429 FRLVDLYQPYLFFYGIFDDSNTEKLRKMVSKTGVENEMFYFDPKVLDWDDYFLNTHVIGL 488
Query: 167 MRNV 170
++ V
Sbjct: 489 LKYV 492
>sp|Q1PEI6|FACR8_ARATH Fatty acyl-CoA reductase 8 OS=Arabidopsis thaliana GN=FAR8 PE=2
SV=1
Length = 496
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 74/162 (45%), Gaps = 13/162 (8%)
Query: 25 VYQIASSVTNPLVTKYLMSLLHEHFDSSPFLDSKGSPIRVPLMKLFTSMEDFSAHLLDG- 83
VYQ+ SS NP++ + +L +F + GS I V MKL ++ FS ++
Sbjct: 335 VYQVGSSHQNPIIYGEIREILFCYFTKNSLRSRNGSMITVSKMKLIPTLALFSLYMTIRY 394
Query: 84 -------AMQRSIIGSSNGEQLAQKQYEILRRKEFANVYLPYGFYAGRFDCSNTMGLMQI 136
+ I S G++ K +I +Y PY + G FD NT L
Sbjct: 395 KLPVQLLKLVDIIYPSREGDEYKNKNRKIDMVMRLVKLYEPYVLFKGIFDDRNTKNLCAK 454
Query: 137 MNEEEKKK-----FGFDMGSIDWKHYITNVHVPGLMRNVMKE 173
EE+ + F FD I WK Y+ NVH+PGL+ +V+K+
Sbjct: 455 QKEEDNRNSENFMFDFDPKIIKWKDYLINVHIPGLITHVLKK 496
>sp|Q0WRB0|FACR5_ARATH Probable fatty acyl-CoA reductase 5 OS=Arabidopsis thaliana GN=FAR5
PE=2 SV=1
Length = 496
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 82/188 (43%), Gaps = 20/188 (10%)
Query: 1 MVVNATLAAIAKH--GQVVIQKPEVKVYQIASSVTNPLVTKYLMSLLHEHFDSSPFLDSK 58
MV NA + A AKH G V VY + SS NP+ + + +F +P
Sbjct: 314 MVANAMITAAAKHAGGSGVHM-----VYHVGSSHQNPVTFGEIHEIAVRYFTKNPLRSRN 368
Query: 59 GSPIRVPLMKLFTSMEDFSAHLLDG--------AMQRSIIGSSNGEQLAQKQYEILRRKE 110
GS I V ++ +M FS ++ + I NG++ K +I
Sbjct: 369 GSLITVSKVRFIPTMALFSLYMTLRYKLPLQLLKLVDIIYPWRNGDKYGDKNRKIELVMR 428
Query: 111 FANVYLPYGFYAGRFDCSNTMGLMQIMNEEEKKK-----FGFDMGSIDWKHYITNVHVPG 165
+Y PY + G FD NT L EEE K F FD I+W Y+TN+H+ G
Sbjct: 429 LVELYEPYVLFKGIFDDRNTKSLCANQKEEEIKNTEKLMFDFDPKGINWGDYLTNIHISG 488
Query: 166 LMRNVMKE 173
L+ +V+K+
Sbjct: 489 LVTHVLKK 496
>sp|Q9FMQ9|FACR7_ARATH Putative fatty acyl-CoA reductase 7 OS=Arabidopsis thaliana GN=FAR7
PE=3 SV=1
Length = 409
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 14/166 (8%)
Query: 1 MVVNATLAAIAKHGQVVIQKPEVKVYQIASSVTNPLVTKYLMSLLHEHFDSSPFLDSKGS 60
MVVNA +A A H VY + SS NP++ K + ++ +F SP + G
Sbjct: 240 MVVNAMIAIAADHCH---DSGSHTVYHVGSSNQNPVIYKQIYEMMSRYFMKSPLVGRNGM 296
Query: 61 PIRVPLMKLFTSMEDFSAHL-LDGAMQRSIIGSSNGEQLAQKQYEILRRKEF------AN 113
I VP + +++ F + L + I+G + L+Q+ L ++F
Sbjct: 297 LI-VPKVTRISTLARFRVYTNLRYKLPIQILGLLSVISLSQRDKFALHNRKFKMAMRLVK 355
Query: 114 VYLPYGFYAGRFDCSNTMGLMQIMNEEE--KKKFGFDMGSIDWKHY 157
+Y PY + G FD N M ++I NE + +K FG + IDW+ Y
Sbjct: 356 LYKPYVLFKGIFDDKN-METLRIKNEAKDMEKLFGTNPKCIDWEDY 400
>sp|Q66H50|FACR1_RAT Fatty acyl-CoA reductase 1 OS=Rattus norvegicus GN=Far1 PE=2 SV=1
Length = 515
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 18/181 (9%)
Query: 1 MVVNATLAAIAKHGQVVIQKPE-VKVYQIASSVTNPLVTKYLMSLLHEHFDSSPFLDSKG 59
+VVN +LAA G + +P + VY + TNP + L+ F ++P
Sbjct: 280 VVVNTSLAAAWYSG---VNRPRNIMVYNCTTGSTNPFHWGEVGDYLNHSFKTNPL----N 332
Query: 60 SPIRVPLMKLFTSMEDFSAHLLDGAMQR--SIIGSSNGEQLAQKQY--EILRRKEFANVY 115
R P +K +++ + H G +++ QK + + + R A V+
Sbjct: 333 QVFRHPYVKFYSN--NLMLHYWKGVKHTVPALLLDLALRLTGQKPWMMKTITRLHKAMVF 390
Query: 116 LPYGFYAGRF--DCSNTMGLMQIMNEEEKKKFGFDMGSIDWKHYITNVHVPGLMRNVMKE 173
L Y F + + + N LM +N E+KK F D+ + W YI N + G + V+ E
Sbjct: 391 LEY-FTSNSWVWNTDNVNMLMNQLNPEDKKTFNIDVRQLHWAEYIEN-YCMGTKKYVLNE 448
Query: 174 K 174
+
Sbjct: 449 E 449
>sp|Q960W6|FACR3_DROME Putative fatty acyl-CoA reductase CG8306 OS=Drosophila melanogaster
GN=CG8306 PE=2 SV=1
Length = 516
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 68/161 (42%), Gaps = 20/161 (12%)
Query: 22 EVKVYQIASSVTNP----LVTKYLMSLLHEHFDSSPFLDSKGSPIRVPLMKLFTSMEDFS 77
+++++ + SS P L+T + S LH++ P S + P ++L S+ F
Sbjct: 308 DLQIFHLTSSTYKPFRFELMTDKINSYLHDY----PL----NSAVWYPNLRLVKSLWVFR 359
Query: 78 A-----HLLDGAMQRSIIGSSNGEQLAQKQYEILRRKEFANVYLPYGFYAGRFDCSNTMG 132
H + + + G + + ++ + N + F FD +
Sbjct: 360 LSAILFHFIPAIILDLVTKIGGGRPILVRLHKNVWNS--LNTLEKFIFTEWHFDSKRLLA 417
Query: 133 LMQIMNEEEKKKFGFDMGSIDWKHYITNVHVPGLMRNVMKE 173
L + +N +KKKF D+G + W Y +N + G+ + + KE
Sbjct: 418 LSKTLNIVDKKKFFIDIGELAWDEYFSNT-ILGVRQYLSKE 457
>sp|Q7TNT2|FACR2_MOUSE Fatty acyl-CoA reductase 2 OS=Mus musculus GN=Far2 PE=2 SV=1
Length = 515
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 121 YAGRFDCSNTMGLMQIMNEEEKKKFGFDMGSIDWKHYITNVHVPGLMRNVMKE 173
++ + +NT L+ ++ E+++ F FD+ ++W YI N +V G+ + ++KE
Sbjct: 397 HSWEWSTNNTEMLLSELSPEDQRVFNFDVRQLNWLEYIEN-YVLGVKKYLLKE 448
>sp|Q96K12|FACR2_HUMAN Fatty acyl-CoA reductase 2 OS=Homo sapiens GN=FAR2 PE=2 SV=1
Length = 515
Score = 34.3 bits (77), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 129 NTMGLMQIMNEEEKKKFGFDMGSIDWKHYITNVHVPGLMRNVMKE 173
NT LM ++ E+++ F FD+ ++W YI N +V G+ + ++KE
Sbjct: 405 NTEMLMSELSPEDQRVFNFDVRQLNWLEYIEN-YVLGVKKYLLKE 448
>sp|Q0P5J1|FACR2_BOVIN Fatty acyl-CoA reductase 2 OS=Bos taurus GN=FAR2 PE=2 SV=1
Length = 515
Score = 33.9 bits (76), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 129 NTMGLMQIMNEEEKKKFGFDMGSIDWKHYITNVHVPGLMRNVMKE 173
NT LM ++ E+++ F FD+ ++W YI N +V G+ + ++KE
Sbjct: 405 NTEMLMSELSPEDQRVFNFDVRQLNWLEYIEN-YVLGVKKYLLKE 448
>sp|Q5R834|FACR1_PONAB Fatty acyl-CoA reductase 1 OS=Pongo abelii GN=FAR1 PE=2 SV=1
Length = 515
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 125 FDCSNTMGLMQIMNEEEKKKFGFDMGSIDWKHYITNVHVPGLMRNVMKEK 174
++ N LM +N E+KK F D+ + W YI N + G + V+ E+
Sbjct: 401 WNTDNVNMLMNQLNPEDKKTFNIDVRQLHWAEYIEN-YCLGTKKYVLNEE 449
>sp|Q922J9|FACR1_MOUSE Fatty acyl-CoA reductase 1 OS=Mus musculus GN=Far1 PE=1 SV=1
Length = 515
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 125 FDCSNTMGLMQIMNEEEKKKFGFDMGSIDWKHYITNVHVPGLMRNVMKEK 174
++ N LM +N E+KK F D+ + W YI N + G + V+ E+
Sbjct: 401 WNTDNVNMLMNQLNPEDKKTFNIDVRQLHWAEYIEN-YCMGTKKYVLNEE 449
>sp|Q8WVX9|FACR1_HUMAN Fatty acyl-CoA reductase 1 OS=Homo sapiens GN=FAR1 PE=1 SV=1
Length = 515
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 125 FDCSNTMGLMQIMNEEEKKKFGFDMGSIDWKHYITNVHVPGLMRNVMKEK 174
++ N LM +N E+KK F D+ + W YI N + G + V+ E+
Sbjct: 401 WNTENVNMLMNQLNPEDKKTFNIDVRQLHWAEYIEN-YCLGTKKYVLNEE 449
>sp|A1ZAI3|FACR2_DROME Putative fatty acyl-CoA reductase CG8303 OS=Drosophila melanogaster
GN=CG8303 PE=2 SV=2
Length = 620
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 124 RFDCSNTMGLMQIMNEEEKKKFGFDMGSIDWKHYITNVHVPGLMRNVMKE 173
R+ N + + ++ E +++++ FD DW +I + G+ R KE
Sbjct: 515 RYSLKNALRISALIPESDRRRYNFDASQCDWSEFIDRCLI-GIRRFYFKE 563
>sp|Q5ZM72|FACR1_CHICK Fatty acyl-CoA reductase 1 OS=Gallus gallus GN=FAR1 PE=2 SV=1
Length = 515
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 125 FDCSNTMGLMQIMNEEEKKKFGFDMGSIDWKHYITNVHVPGLMRNVMKEK 174
++ N LM ++ E+KK F FD+ + W Y+ N + G + V+ E+
Sbjct: 401 WNTENMTMLMNQLSPEDKKTFNFDVRQLHWAEYMEN-YCMGTKKYVLNEE 449
>sp|Q7ZXF5|FACR1_XENLA Fatty acyl-CoA reductase 1 OS=Xenopus laevis GN=far1 PE=2 SV=1
Length = 515
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 125 FDCSNTMGLMQIMNEEEKKKFGFDMGSIDWKHYITNVHVPGLMRNVMKEK 174
++ NT LM ++ E+KK F FD+ + W Y+ N + G + V+ E+
Sbjct: 401 WNNENTNMLMSQLSPEDKKVFNFDVRQLHWAEYMEN-YCMGTKKYVLNEE 449
>sp|Q085E0|PYRH_SHEFN Uridylate kinase OS=Shewanella frigidimarina (strain NCIMB 400)
GN=pyrH PE=3 SV=1
Length = 245
Score = 30.4 bits (67), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 15/104 (14%)
Query: 5 ATLAAIAKHGQVVIQKPEVKVYQIASSVTNPLVTKYLMSLLHEHFDSSPFLDSKGSPIRV 64
A L I +VV++ +V A + NP KY D+ F + S ++V
Sbjct: 149 ACLRGIEIEAEVVLKGTKVDGVYSADPMKNPEAVKY---------DTLSFAEVLESELKV 199
Query: 65 PLMKLFTSMEDFSAHLL------DGAMQRSIIGSSNGEQLAQKQ 102
+ FT D + +L GA++R I+G G ++ KQ
Sbjct: 200 MDLAAFTMARDHNMPILVFNMNKPGALRRVIMGEKEGTIISSKQ 243
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,243,728
Number of Sequences: 539616
Number of extensions: 3032463
Number of successful extensions: 6796
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6763
Number of HSP's gapped (non-prelim): 21
length of query: 197
length of database: 191,569,459
effective HSP length: 111
effective length of query: 86
effective length of database: 131,672,083
effective search space: 11323799138
effective search space used: 11323799138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)