Query 029185
Match_columns 197
No_of_seqs 116 out of 699
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:52:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1221 Acyl-CoA reductase [Li 100.0 2.6E-46 5.7E-51 327.3 14.7 177 1-188 284-467 (467)
2 PLN02503 fatty acyl-CoA reduct 100.0 5.5E-36 1.2E-40 272.2 16.6 169 1-174 426-604 (605)
3 PLN02996 fatty acyl-CoA reduct 100.0 1.1E-34 2.4E-39 259.8 15.9 165 2-172 313-491 (491)
4 PF03015 Sterile: Male sterili 100.0 2.9E-32 6.2E-37 193.5 6.2 93 77-173 1-94 (94)
5 cd09071 FAR_C C-terminal domai 100.0 1.7E-28 3.7E-33 173.2 7.1 90 78-171 2-92 (92)
6 PTZ00374 dihydroxyacetone phos 87.1 0.27 5.9E-06 47.9 1.1 48 125-174 428-483 (1108)
7 PF06956 RtcR: Regulator of RN 61.2 46 0.00099 26.3 6.7 67 22-88 68-138 (183)
8 PF05208 ALG3: ALG3 protein; 42.7 11 0.00023 33.1 0.7 23 147-169 20-44 (368)
9 KOG2762 Mannosyltransferase [C 39.0 13 0.00027 32.6 0.6 23 147-169 48-72 (429)
10 PF08281 Sigma70_r4_2: Sigma-7 38.5 21 0.00045 21.5 1.4 50 129-192 3-53 (54)
11 COG4479 Uncharacterized protei 36.5 18 0.00039 24.0 0.8 33 126-160 37-71 (74)
12 PF11352 DUF3155: Protein of u 33.4 21 0.00045 24.3 0.8 17 22-38 20-36 (90)
13 PRK09643 RNA polymerase sigma 32.7 29 0.00063 26.9 1.7 54 129-196 127-181 (192)
14 PRK01371 sec-independent trans 32.0 29 0.00062 26.2 1.4 45 140-188 49-93 (137)
15 PF07377 DUF1493: Protein of u 31.8 21 0.00046 25.5 0.7 16 143-158 53-68 (111)
16 TIGR01472 gmd GDP-mannose 4,6- 29.5 88 0.0019 26.4 4.3 25 24-50 246-270 (343)
17 COG4650 RtcR Sigma54-dependent 29.1 2.3E+02 0.0049 24.7 6.5 67 22-88 69-139 (531)
18 PLN02778 3,5-epimerase/4-reduc 29.0 1.1E+02 0.0023 25.6 4.6 25 24-50 214-238 (298)
19 PRK09638 RNA polymerase sigma 26.7 65 0.0014 24.2 2.7 55 128-196 118-173 (176)
20 TIGR02937 sigma70-ECF RNA poly 26.4 65 0.0014 22.8 2.6 55 129-197 103-158 (158)
21 KOG4743 Cyclin-dependent kinas 26.3 41 0.0009 26.8 1.5 21 129-149 34-54 (195)
22 TIGR02989 Sig-70_gvs1 RNA poly 25.5 61 0.0013 23.8 2.3 55 129-197 104-159 (159)
23 PRK10217 dTDP-glucose 4,6-dehy 25.1 1.5E+02 0.0032 25.0 4.9 26 24-51 247-272 (355)
24 TIGR01214 rmlD dTDP-4-dehydror 25.1 1.5E+02 0.0033 23.9 4.9 26 23-50 204-229 (287)
25 TIGR02952 Sig70_famx2 RNA poly 23.7 63 0.0014 24.0 2.1 55 129-197 115-170 (170)
26 PLN02653 GDP-mannose 4,6-dehyd 23.5 1.3E+02 0.0029 25.1 4.3 25 24-50 252-276 (340)
27 PF15550 Draxin: Draxin 21.9 39 0.00084 28.6 0.7 26 146-185 201-226 (323)
28 PRK11150 rfaD ADP-L-glycero-D- 21.7 1.5E+02 0.0032 24.4 4.1 25 24-50 231-255 (308)
29 PRK12516 RNA polymerase sigma 21.6 63 0.0014 25.0 1.8 53 129-195 109-162 (187)
30 TIGR02950 SigM_subfam RNA poly 21.5 1E+02 0.0022 22.5 2.8 55 128-196 97-152 (154)
31 PRK15181 Vi polysaccharide bio 21.4 1.7E+02 0.0038 24.7 4.6 26 23-50 258-283 (348)
32 PRK12542 RNA polymerase sigma 20.2 68 0.0015 24.5 1.7 53 129-195 115-168 (185)
33 PLN02240 UDP-glucose 4-epimera 20.1 1.9E+02 0.0042 24.2 4.6 25 24-50 266-290 (352)
No 1
>KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism]
Probab=100.00 E-value=2.6e-46 Score=327.30 Aligned_cols=177 Identities=27% Similarity=0.444 Sum_probs=165.4
Q ss_pred ChhhHHHHHHHhccccccCC-CCceEEEeecCCCCCccHHHHHHHHHhhhhcCCCCCCCCCeeeeccccch-----HHHH
Q 029185 1 MVVNATLAAIAKHGQVVIQK-PEVKVYQIASSVTNPLVTKYLMSLLHEHFDSSPFLDSKGSPIRVPLMKLF-----TSME 74 (197)
Q Consensus 1 ~VvNa~I~aa~~~~~~~~~~-~~~~VYn~~ss~~NPitw~~~~~~~~~~~~~~P~~~~~~~~~~~p~~~~~-----~~~~ 74 (197)
||||+||+|+|+++.. .+ ++++|||||||..||+||+++.+.+.+++.++|+++ ++|+|...++ +.+.
T Consensus 284 ~vvN~~ia~~~~~~~~--~~~~~~~IY~~tss~~Np~t~~~~~e~~~~~~~~~Pl~~----~iw~P~~~~~sn~~~f~~~ 357 (467)
T KOG1221|consen 284 MVVNAMIASAWQHAGN--SKEKTPPIYHLTSSNDNPVTWGDFIELALRYFEKIPLEK----MIWYPFGTLTSNPWLFNLA 357 (467)
T ss_pred HHHHHHHHHHHHHhcc--CCCCCCcEEEecccccCcccHHHHHHHHHHhcccCCccc----ceeccCceeeecHhHHHHH
Confidence 6899999999998863 22 469999999999999999999999999999999998 7999988764 6799
Q ss_pred HHHHhhHHHHHHHHhhhcccChhHHHHHHHHHHHHH-HHhhccccccceeEEecCcHHHHHHHccHhhhccccccCcccC
Q 029185 75 DFSAHLLDGAMQRSIIGSSNGEQLAQKQYEILRRKE-FANVYLPYGFYAGRFDCSNTMGLMQIMNEEEKKKFGFDMGSID 153 (197)
Q Consensus 75 ~~~~h~lp~~~~d~~~~~~~~~~~~~~l~k~~~ki~-~~~~l~~Ft~~~W~F~~~n~~~L~~~ls~~Dr~~F~~D~~~id 153 (197)
.+++|++|++++|+..++.|++| .+.++++|++ ..++++||++++|+|+++|+.+|++.||++||++|+||++++|
T Consensus 358 ~~~~h~lPa~~~d~~~~i~g~k~---~~~k~~~ki~~~~~~l~~f~~~~w~Fd~~n~~~L~~~~~~~d~~~f~fd~~~ld 434 (467)
T KOG1221|consen 358 AFLYHTLPAYILDLLLRLLGKKP---RLVKLYRKIHKLVKLLEPFSLFKWIFDNKNTEKLREKMSEEDKRLFNFDMKQLD 434 (467)
T ss_pred HHHHHHhhHHHHHHHHHHhCCCh---hhhHHHHHHHHHHHhhhhheeceEEecCccHHHHHHhCCHHHHhhcCCCcccCC
Confidence 99999999999999998888887 7889999999 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHhccchhhhHhhhcCCCCCChhhhhccccc
Q 029185 154 WKHYITNVHVPGLMRNVMKEKRGETLVGAGNKIPG 188 (197)
Q Consensus 154 W~~Y~~~~~~~Girkyllke~~~~~l~~a~~~~~~ 188 (197)
|++|+.+ |++|+|+|++||+ +++||+||+++++
T Consensus 435 W~ey~~~-~i~G~r~~llKe~-~e~l~~~r~~~kr 467 (467)
T KOG1221|consen 435 WEEYFNR-HLLGLRKYLLKES-PESLPQARKRLKR 467 (467)
T ss_pred HHHHHHH-HHHHHHHHHhcCC-hhhhHHHHHhhcC
Confidence 9999999 9999999999999 8999999998863
No 2
>PLN02503 fatty acyl-CoA reductase 2
Probab=100.00 E-value=5.5e-36 Score=272.15 Aligned_cols=169 Identities=62% Similarity=0.971 Sum_probs=144.4
Q ss_pred ChhhHHHHHHHhccccccCCCCceEEEeecCCCCCccHHHHHHHHHhhhhcCCCCCCCCCeeeeccccchHHHHHHHHhh
Q 029185 1 MVVNATLAAIAKHGQVVIQKPEVKVYQIASSVTNPLVTKYLMSLLHEHFDSSPFLDSKGSPIRVPLMKLFTSMEDFSAHL 80 (197)
Q Consensus 1 ~VvNa~I~aa~~~~~~~~~~~~~~VYn~~ss~~NPitw~~~~~~~~~~~~~~P~~~~~~~~~~~p~~~~~~~~~~~~~h~ 80 (197)
+|||++|+|+|++... ...+.+|||||||..||++|+++.+.+.+++.++|+.+..|.++|+|...+++.+..|++|+
T Consensus 426 ~vvna~i~a~a~~~~~--~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~h~ 503 (605)
T PLN02503 426 MVVNATLAAMAKHGGA--AKPEINVYQIASSVVNPLVFQDLARLLYEHYKSSPYMDSKGRPIHVPPMKLFSSMEDFSSHL 503 (605)
T ss_pred HHHHHHHHHHHhhhcc--cCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHhhCCcccccCcceeccCceehhhHHHHHHHH
Confidence 5899999997776542 23468999999999999999999999999999999999998889999999999999999999
Q ss_pred HHHHHHHHhhh-cccChhHHHHHHHHHH--------HHH-HHhhccccccceeEEecCcHHHHHHHccHhhhccccccCc
Q 029185 81 LDGAMQRSIIG-SSNGEQLAQKQYEILR--------RKE-FANVYLPYGFYAGRFDCSNTMGLMQIMNEEEKKKFGFDMG 150 (197)
Q Consensus 81 lp~~~~d~~~~-~~~~~~~~~~l~k~~~--------ki~-~~~~l~~Ft~~~W~F~~~n~~~L~~~ls~~Dr~~F~~D~~ 150 (197)
+.|.+..+.+. ..++++ ++.+.++ ++. ++++++|||+++|+|+|+|+++|++.|+|+||++|+||++
T Consensus 504 ~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~k~~~~~~~~~~~~~~ft~~~w~F~~~n~~~L~~~ms~~Dr~~F~~D~~ 580 (605)
T PLN02503 504 WRDALLRSGLAGMSSSDR---KLSQKLENICAKSVEQAKYLASIYEPYTFYGGRFDNSNTQRLMERMSEEEKAEFGFDVG 580 (605)
T ss_pred HHHHHHHHhhhcccccCh---HHHHHHHHHHHHHHHHHHHHHHHHhhheeCeEEEechHHHHHHHhCCHHHhhccCCCcC
Confidence 87877666421 112333 3344333 456 7799999999999999999999999999999999999999
Q ss_pred ccCHHHHHHhccchhhhHhhhcCC
Q 029185 151 SIDWKHYITNVHVPGLMRNVMKEK 174 (197)
Q Consensus 151 ~idW~~Y~~~~~~~Girkyllke~ 174 (197)
.|||++|+.++|++|+|+|++||.
T Consensus 581 ~idW~~Y~~~~~i~G~rky~lk~~ 604 (605)
T PLN02503 581 SIDWRDYITNVHIPGLRRHVMKGR 604 (605)
T ss_pred CCCHHHHHHHhhhhHHHHHHhccC
Confidence 999999999769999999999986
No 3
>PLN02996 fatty acyl-CoA reductase
Probab=100.00 E-value=1.1e-34 Score=259.81 Aligned_cols=165 Identities=32% Similarity=0.493 Sum_probs=144.0
Q ss_pred hhhHHHHHHHhccccccCCCCceEEEeecCCCCCccHHHHHHHHHhhhhcCCCCCCCCCeeeeccccch-----HHHHHH
Q 029185 2 VVNATLAAIAKHGQVVIQKPEVKVYQIASSVTNPLVTKYLMSLLHEHFDSSPFLDSKGSPIRVPLMKLF-----TSMEDF 76 (197)
Q Consensus 2 VvNa~I~aa~~~~~~~~~~~~~~VYn~~ss~~NPitw~~~~~~~~~~~~~~P~~~~~~~~~~~p~~~~~-----~~~~~~ 76 (197)
|||++|++++.... .....+||||+||..||+||+++.+.+.+++.++|+.+..|+++|+|.+.++ +.+..+
T Consensus 313 vv~a~l~a~~~~~~---~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 389 (491)
T PLN02996 313 VVNAMIVAMAAHAG---GQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSKNPWINKEGSPVKVGKGTILSTMASFSLYMT 389 (491)
T ss_pred HHHHHHHHHHHhhc---cCCCCcEEEecCCCCCcccHHHHHHHHHHHhhhCCCcCCCCCeEeeCCceecCcHHHHHHHHH
Confidence 79999999886431 1223579999999999999999999999999999999877789999998874 456678
Q ss_pred HHhhHHHHHHHHhhh--cccChhHHHHHHHHHHHH---H-HHhhccccccceeEEecCcHHHHHHHccHhh---hccccc
Q 029185 77 SAHLLDGAMQRSIIG--SSNGEQLAQKQYEILRRK---E-FANVYLPYGFYAGRFDCSNTMGLMQIMNEEE---KKKFGF 147 (197)
Q Consensus 77 ~~h~lp~~~~d~~~~--~~~~~~~~~~l~k~~~ki---~-~~~~l~~Ft~~~W~F~~~n~~~L~~~ls~~D---r~~F~~ 147 (197)
+.|.+|++++|+... ..+++| ++.++++|+ + .+++++|||+++|+|+++|+++|++.|+++| |++|+|
T Consensus 390 ~~~~lp~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~f~~~~w~f~~~n~~~l~~~~~~~d~~d~~~f~~ 466 (491)
T PLN02996 390 IRYLLPLKALQLVNIILPKRYGD---KYTDLNRKIKLVMRLVDLYKPYVFFKGIFDDTNTEKLRIKRKETGKEEADMFDF 466 (491)
T ss_pred HHHHhHHHHHHHHHHHhhhccCh---HHHHHHHHHHHHHHHHHHhhccccceEEEccHHHHHHHHHCCccccccccEecc
Confidence 888899888877665 345666 788888998 5 5899999999999999999999999999955 999999
Q ss_pred cCcccCHHHHHHhccchhhhHhhhc
Q 029185 148 DMGSIDWKHYITNVHVPGLMRNVMK 172 (197)
Q Consensus 148 D~~~idW~~Y~~~~~~~Girkyllk 172 (197)
|+++|||++|+.++|++|+|+|++|
T Consensus 467 d~~~~~w~~y~~~~~~~g~~~y~~k 491 (491)
T PLN02996 467 DPKSIDWEDYMTNVHIPGLVKYVLK 491 (491)
T ss_pred CcccCCHHHHHHHhhHHHHHHHhcC
Confidence 9999999999999999999999987
No 4
>PF03015 Sterile: Male sterility protein; InterPro: IPR004262 This family represents the C-terminal region of the male sterility protein in a number of organisms. The Arabidopsis thaliana male sterility 2 (MS2) protein is involved in male gametogenesis. The MS2 protein shows sequence similarity to a jojoba protein (also a member of this group) that converts wax fatty acids to fatty alcohols. It has been suggested that a possible function of the MS2 protein may be as a fatty acyl reductase in the formation of pollen wall substances [].; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process
Probab=99.97 E-value=2.9e-32 Score=193.47 Aligned_cols=93 Identities=27% Similarity=0.438 Sum_probs=89.7
Q ss_pred HHhhHHHHHHHHhhhcccChhHHHHHHHHHHHHH-HHhhccccccceeEEecCcHHHHHHHccHhhhccccccCcccCHH
Q 029185 77 SAHLLDGAMQRSIIGSSNGEQLAQKQYEILRRKE-FANVYLPYGFYAGRFDCSNTMGLMQIMNEEEKKKFGFDMGSIDWK 155 (197)
Q Consensus 77 ~~h~lp~~~~d~~~~~~~~~~~~~~l~k~~~ki~-~~~~l~~Ft~~~W~F~~~n~~~L~~~ls~~Dr~~F~~D~~~idW~ 155 (197)
++|++||+++|+++++.|++| +++++++|++ ++++++||+++||+|+|+|+++|++.|+|+||++|+||+++|||+
T Consensus 1 ~~h~lPA~~~D~~~~l~g~kp---~~~k~~~ki~~~~~~~~~F~~~eW~F~~~n~~~L~~~l~~~D~~~F~fD~~~idW~ 77 (94)
T PF03015_consen 1 LFHFLPAYLLDLILRLFGQKP---RMVKIYRKIRKALEVLEYFTTNEWIFDNDNTRRLWERLSPEDREIFNFDIRSIDWE 77 (94)
T ss_pred CcchHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHHHHHHHHhCceeecchHHHHHHHhCchhcCceecCCCCCCCHH
Confidence 479999999999999998888 7899999999 889999999999999999999999999999999999999999999
Q ss_pred HHHHhccchhhhHhhhcC
Q 029185 156 HYITNVHVPGLMRNVMKE 173 (197)
Q Consensus 156 ~Y~~~~~~~Girkyllke 173 (197)
+|+.+ +++|+|+|++||
T Consensus 78 ~Y~~~-~~~G~rkyllke 94 (94)
T PF03015_consen 78 EYFRN-YIPGIRKYLLKE 94 (94)
T ss_pred HHHHH-HHHHHHHHHhCC
Confidence 99999 999999999998
No 5
>cd09071 FAR_C C-terminal domain of fatty acyl CoA reductases. C-terminal domain of fatty acyl CoA reductases, a family of SDR-like proteins. SDRs or short-chain dehydrogenases/reductases are Rossmann-fold NAD(P)H-binding proteins. Many proteins in this FAR_C family may function as fatty acyl-CoA reductases (FARs), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as the biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. The function of this C-terminal domain is unclear.
Probab=99.95 E-value=1.7e-28 Score=173.20 Aligned_cols=90 Identities=27% Similarity=0.506 Sum_probs=85.6
Q ss_pred HhhHHHHHHHHhhhcccChhHHHHHHHHHHHHH-HHhhccccccceeEEecCcHHHHHHHccHhhhccccccCcccCHHH
Q 029185 78 AHLLDGAMQRSIIGSSNGEQLAQKQYEILRRKE-FANVYLPYGFYAGRFDCSNTMGLMQIMNEEEKKKFGFDMGSIDWKH 156 (197)
Q Consensus 78 ~h~lp~~~~d~~~~~~~~~~~~~~l~k~~~ki~-~~~~l~~Ft~~~W~F~~~n~~~L~~~ls~~Dr~~F~~D~~~idW~~ 156 (197)
.|.+|+.++|+...+.|++| +++++++|+. .+++++|||++||+|+++|+++|++.|+|+||+.|+||+++|||++
T Consensus 2 ~~~lpa~~~d~~~~l~g~~~---~~~~~~~k~~~~~~~~~~Ft~~~w~F~~~n~~~L~~~l~~~Dr~~F~fD~~~idW~~ 78 (92)
T cd09071 2 LHLLPAYLLDLLLRLLGRKP---RLLKLYRKIHKLLDLLEYFTTNEWRFDNDNTRALWERLSEEDRELFNFDIRSIDWDD 78 (92)
T ss_pred cccchHHHHHHHHHHhCCCh---HHHHHHHHHHHHHHHhhccccCeEEeeCcHHHHHHHHCCHHHHHhCCCCCCCCCHHH
Confidence 58999999999988888887 7888999999 8899999999999999999999999999999999999999999999
Q ss_pred HHHhccchhhhHhhh
Q 029185 157 YITNVHVPGLMRNVM 171 (197)
Q Consensus 157 Y~~~~~~~Girkyll 171 (197)
|+.+ +++|+|+|++
T Consensus 79 Y~~~-~~~G~r~yll 92 (92)
T cd09071 79 YFEN-YIPGLRKYLL 92 (92)
T ss_pred HHHH-HHHHHHHHhC
Confidence 9999 9999999985
No 6
>PTZ00374 dihydroxyacetone phosphate acyltransferase; Provisional
Probab=87.08 E-value=0.27 Score=47.93 Aligned_cols=48 Identities=15% Similarity=0.359 Sum_probs=34.8
Q ss_pred EecCcHHHHHHHccHhhhcc---c-cccCcccCHHHHHHhccc----hhhhHhhhcCC
Q 029185 125 FDCSNTMGLMQIMNEEEKKK---F-GFDMGSIDWKHYITNVHV----PGLMRNVMKEK 174 (197)
Q Consensus 125 F~~~n~~~L~~~ls~~Dr~~---F-~~D~~~idW~~Y~~~~~~----~Girkyllke~ 174 (197)
|...=...|...++. |... . .+|..+|||+.|+.. ++ .|+.||++||+
T Consensus 428 ~~~~~y~~ll~~~~~-~~~~~~~~~~~~~~~i~W~~y~~~-~~~~~l~~l~~~v~~~~ 483 (1108)
T PTZ00374 428 FNVALYHSLLRRVTS-DATLRPLHPYIALVEVDWDAYVKV-IAQAVLEHLARQIFRSP 483 (1108)
T ss_pred ccHHHHHHHHHHHhh-cccccchHhhhHHHhcCHHHHHHH-HHHHHHHHHHHHHhcCC
Confidence 333334555555544 3222 2 469999999999999 88 99999999997
No 7
>PF06956 RtcR: Regulator of RNA terminal phosphate cyclase; InterPro: IPR009715 RtcR is a sigma54-dependent enhancer binding protein [] that activates transcription of the rtcBA operon. The product of the rtcA gene is an RNA 3 -terminal phosphate cyclase []. This domain is found at the N terminus of the RtcR sequence. RtcR, and other sigma54-dependent activators, contain IPR002078 from INTERPRO in the central region of the protein sequence.
Probab=61.20 E-value=46 Score=26.25 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=46.3
Q ss_pred CceEEEeecCCCCCccHHHHHHHHHhhhhcCCCCC-CCCCeeeeccccchHHHHHHHH---hhHHHHHHHH
Q 029185 22 EVKVYQIASSVTNPLVTKYLMSLLHEHFDSSPFLD-SKGSPIRVPLMKLFTSMEDFSA---HLLDGAMQRS 88 (197)
Q Consensus 22 ~~~VYn~~ss~~NPitw~~~~~~~~~~~~~~P~~~-~~~~~~~~p~~~~~~~~~~~~~---h~lp~~~~d~ 88 (197)
+..|--....-.||..++++.....++...+||.- .-..-+....++-...||.|++ +.+|+-++..
T Consensus 68 ~TeV~~~~v~l~dPWDfeeVY~~l~dfa~~Y~Fd~e~E~YlvHITTGTHVaQIc~FLL~Esr~lPa~LlQt 138 (183)
T PF06956_consen 68 ETEVRLHEVELADPWDFEEVYAALHDFARGYPFDPENEDYLVHITTGTHVAQICWFLLTESRYLPARLLQT 138 (183)
T ss_pred CCEEEEEEeccCCCccHHHHHHHHHHHHhhCCCCCCCCceEEEecCCcHHHHHHHHHHHHhccccHHHhcc
Confidence 34454445567899999999999999999999963 1112344444555556887776 5678887665
No 8
>PF05208 ALG3: ALG3 protein; InterPro: IPR007873 The formation of N-glycosidic linkages of glycoproteins involves the ordered assembly of the common Glc3Man9GlcNAc2 core-oligosaccharide on the lipid carrier dolichyl pyrophosphate. Whereas early mannosylation steps occur on the cytoplasmic side of the endoplasmic reticulum with GDP-Man as donor, the final reactions from Man5GlcNAc2-PP-Dol to Man9GlcNAc2-PP-Dol on the lumenal side use Dol-P-Man []. The ALG3 gene encodes the Dol-P-Man:Man5GlcNAc2-PP-Dol mannosyltransferase.; GO: 0016758 transferase activity, transferring hexosyl groups, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=42.66 E-value=11 Score=33.11 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=18.0
Q ss_pred ccCcccCHHHHHHhc--cchhhhHh
Q 029185 147 FDMGSIDWKHYITNV--HVPGLMRN 169 (197)
Q Consensus 147 ~D~~~idW~~Y~~~~--~~~Girky 169 (197)
.--.+|||+.|++++ +..|-+.|
T Consensus 20 VpYTEIDw~aYMqqv~~~~~Ge~DY 44 (368)
T PF05208_consen 20 VPYTEIDWKAYMQQVEGFLNGERDY 44 (368)
T ss_pred ccCccccHHHHHHHHHHHHcCcccH
Confidence 345799999999986 56677777
No 9
>KOG2762 consensus Mannosyltransferase [Carbohydrate transport and metabolism]
Probab=38.99 E-value=13 Score=32.65 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=17.7
Q ss_pred ccCcccCHHHHHHhc--cchhhhHh
Q 029185 147 FDMGSIDWKHYITNV--HVPGLMRN 169 (197)
Q Consensus 147 ~D~~~idW~~Y~~~~--~~~Girky 169 (197)
..-.+|||..|++++ ++-|.+.|
T Consensus 48 V~YTEIDw~AYM~qve~fl~G~~dY 72 (429)
T KOG2762|consen 48 VPYTEIDWKAYMEQVEGFLNGELDY 72 (429)
T ss_pred cCcceecHHHHHHHHHHHHhcccch
Confidence 446799999999985 45577777
No 10
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=38.47 E-value=21 Score=21.55 Aligned_cols=50 Identities=8% Similarity=0.081 Sum_probs=30.3
Q ss_pred cHHHHHHHccHhhhccccc-cCcccCHHHHHHhccchhhhHhhhcCCCCCChhhhhccccchhhh
Q 029185 129 NTMGLMQIMNEEEKKKFGF-DMGSIDWKHYITNVHVPGLMRNVMKEKRGETLVGAGNKIPGGAKF 192 (197)
Q Consensus 129 n~~~L~~~ls~~Dr~~F~~-D~~~idW~~Y~~~~~~~Girkyllke~~~~~l~~a~~~~~~~~~~ 192 (197)
.+.+..+.|+|++|+.|.. .....+|.+=-.. ..-+....+..+.+++++
T Consensus 3 ~l~~~l~~L~~~~r~i~~l~~~~g~s~~eIa~~--------------l~~s~~~v~~~l~ra~~~ 53 (54)
T PF08281_consen 3 ALQQALAQLPERQREIFLLRYFQGMSYAEIAEI--------------LGISESTVKRRLRRARKK 53 (54)
T ss_dssp HHHHHHHCS-HHHHHHHHHHHTS---HHHHHHH--------------CTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCcCHHHHHHH--------------HCcCHHHHHHHHHHHHhh
Confidence 3567889999999999977 6666666665444 134555566666666654
No 11
>COG4479 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.45 E-value=18 Score=24.00 Aligned_cols=33 Identities=21% Similarity=0.564 Sum_probs=25.1
Q ss_pred ecCcHHHHHHHccHhhhccccccCcccC--HHHHHHh
Q 029185 126 DCSNTMGLMQIMNEEEKKKFGFDMGSID--WKHYITN 160 (197)
Q Consensus 126 ~~~n~~~L~~~ls~~Dr~~F~~D~~~id--W~~Y~~~ 160 (197)
.+++...+.+-| +++.-|-+.++.+| |++|+..
T Consensus 37 ~t~Df~~is~YL--E~~a~f~~~m~~FDeiwe~Yle~ 71 (74)
T COG4479 37 HTDDFHEISDYL--ETNADFLFNMSVFDEIWEEYLEH 71 (74)
T ss_pred CCccHHHHHHHH--HhcCCcccchhhHHHHHHHHHHH
Confidence 355666665555 56788999999999 9999886
No 12
>PF11352 DUF3155: Protein of unknown function (DUF3155); InterPro: IPR021498 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=33.37 E-value=21 Score=24.32 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=15.3
Q ss_pred CceEEEeecCCCCCccH
Q 029185 22 EVKVYQIASSVTNPLVT 38 (197)
Q Consensus 22 ~~~VYn~~ss~~NPitw 38 (197)
.+|.||.+||.+.|+|-
T Consensus 20 ~vP~~~ie~ge~KpVTA 36 (90)
T PF11352_consen 20 HVPQFNIESGEDKPVTA 36 (90)
T ss_pred hCCcceeccCCCCccHH
Confidence 58999999999999984
No 13
>PRK09643 RNA polymerase sigma factor SigM; Reviewed
Probab=32.73 E-value=29 Score=26.92 Aligned_cols=54 Identities=9% Similarity=-0.019 Sum_probs=39.1
Q ss_pred cHHHHHHHccHhhhccccc-cCcccCHHHHHHhccchhhhHhhhcCCCCCChhhhhccccchhhhhhhc
Q 029185 129 NTMGLMQIMNEEEKKKFGF-DMGSIDWKHYITNVHVPGLMRNVMKEKRGETLVGAGNKIPGGAKFYKSK 196 (197)
Q Consensus 129 n~~~L~~~ls~~Dr~~F~~-D~~~idW~~Y~~~~~~~Girkyllke~~~~~l~~a~~~~~~~~~~~~~~ 196 (197)
.+.++++.|++++|+.|-. .....+.++--.. ..-+....+.++.+++++.|+.
T Consensus 127 ~l~~~l~~Lp~~~r~i~~l~~~~g~s~~EIA~~--------------lg~s~~tV~~rl~rar~~Lr~~ 181 (192)
T PRK09643 127 AVQRALMRLPVEQRAALVAVDMQGYSVADAARM--------------LGVAEGTVKSRCARGRARLAEL 181 (192)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCCHHHHHHH--------------HCcCHHHHHHHHHHHHHHHHHH
Confidence 4777889999999999976 4566666665555 2456666778888887777654
No 14
>PRK01371 sec-independent translocase; Provisional
Probab=31.98 E-value=29 Score=26.17 Aligned_cols=45 Identities=4% Similarity=0.218 Sum_probs=24.8
Q ss_pred hhhccccccCcccCHHHHHHhccchhhhHhhhcCCCCCChhhhhccccc
Q 029185 140 EEKKKFGFDMGSIDWKHYITNVHVPGLMRNVMKEKRGETLVGAGNKIPG 188 (197)
Q Consensus 140 ~Dr~~F~~D~~~idW~~Y~~~~~~~Girkyllke~~~~~l~~a~~~~~~ 188 (197)
+-++...-+...+||++|=-. .+ +|+.|+.++ .+.+...+..++.
T Consensus 49 ~i~~Elg~ef~d~d~r~l~Pr-~~--vrk~l~d~~-~~~~~~~~~~~~~ 93 (137)
T PRK01371 49 DLRSELGPEFADLDLRDLNPK-TF--VRKHLLEDL-DDDIDEIKLGLKT 93 (137)
T ss_pred HHHHHhcchhcccchhhcCHH-HH--HHHHHhhcc-hhhhhhhhhhHHh
Confidence 333334444556777776444 33 577888776 5555544444433
No 15
>PF07377 DUF1493: Protein of unknown function (DUF1493); InterPro: IPR010862 This family consists of several bacterial proteins of around 115 residues in length. Members of this family are largely found in Salmonella and Yersinia species and several have been described as being putative cytoplasmic proteins. The function of this family is unknown.
Probab=31.80 E-value=21 Score=25.50 Aligned_cols=16 Identities=25% Similarity=0.812 Sum_probs=14.5
Q ss_pred ccccccCcccCHHHHH
Q 029185 143 KKFGFDMGSIDWKHYI 158 (197)
Q Consensus 143 ~~F~~D~~~idW~~Y~ 158 (197)
+.|++|++.+||..|+
T Consensus 53 ~~F~Vd~~~f~~~~YF 68 (111)
T PF07377_consen 53 ERFNVDLSDFDFDRYF 68 (111)
T ss_pred HHhCCCcCccCHHHcc
Confidence 3589999999999998
No 16
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=29.49 E-value=88 Score=26.37 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=20.6
Q ss_pred eEEEeecCCCCCccHHHHHHHHHhhhh
Q 029185 24 KVYQIASSVTNPLVTKYLMSLLHEHFD 50 (197)
Q Consensus 24 ~VYn~~ss~~NPitw~~~~~~~~~~~~ 50 (197)
.+||++++ .|+|+.|+.+.+.+...
T Consensus 246 ~~yni~~g--~~~s~~e~~~~i~~~~g 270 (343)
T TIGR01472 246 DDYVIATG--ETHSVREFVEVSFEYIG 270 (343)
T ss_pred ccEEecCC--CceeHHHHHHHHHHHcC
Confidence 48999886 57999999999887654
No 17
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=29.11 E-value=2.3e+02 Score=24.71 Aligned_cols=67 Identities=15% Similarity=0.168 Sum_probs=46.4
Q ss_pred CceEEEeecCCCCCccHHHHHHHHHhhhhcCCCCC-CCCCeeeeccccchHHHHHHHH---hhHHHHHHHH
Q 029185 22 EVKVYQIASSVTNPLVTKYLMSLLHEHFDSSPFLD-SKGSPIRVPLMKLFTSMEDFSA---HLLDGAMQRS 88 (197)
Q Consensus 22 ~~~VYn~~ss~~NPitw~~~~~~~~~~~~~~P~~~-~~~~~~~~p~~~~~~~~~~~~~---h~lp~~~~d~ 88 (197)
+..|--.--.-.||..+.++.....++...+|+.. .-...+.+..++-...||.|++ .++|+-++..
T Consensus 69 etev~~vei~lrnpwdfeevy~~lhdfar~y~f~~e~edylihittgthvaqicwfllaearylparl~qt 139 (531)
T COG4650 69 ETEVVSVEIELRNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQT 139 (531)
T ss_pred cceeEEEEEEecCcccHHHHHHHHHHHhhcCCCCCcccceEEEEecCccHHHHHHHHHHHhhhccHhHhcc
Confidence 34455555567899999999999999999999843 2222355555555567887776 5678776553
No 18
>PLN02778 3,5-epimerase/4-reductase
Probab=29.00 E-value=1.1e+02 Score=25.58 Aligned_cols=25 Identities=8% Similarity=0.299 Sum_probs=20.3
Q ss_pred eEEEeecCCCCCccHHHHHHHHHhhhh
Q 029185 24 KVYQIASSVTNPLVTKYLMSLLHEHFD 50 (197)
Q Consensus 24 ~VYn~~ss~~NPitw~~~~~~~~~~~~ 50 (197)
.+||++++. ++++.|+.+...+...
T Consensus 214 g~yNigs~~--~iS~~el~~~i~~~~~ 238 (298)
T PLN02778 214 GIYNFTNPG--VVSHNEILEMYRDYID 238 (298)
T ss_pred CeEEeCCCC--cccHHHHHHHHHHHhC
Confidence 499987764 8999999998887654
No 19
>PRK09638 RNA polymerase sigma factor SigY; Reviewed
Probab=26.65 E-value=65 Score=24.22 Aligned_cols=55 Identities=7% Similarity=0.054 Sum_probs=37.7
Q ss_pred CcHHHHHHHccHhhhccccc-cCcccCHHHHHHhccchhhhHhhhcCCCCCChhhhhccccchhhhhhhc
Q 029185 128 SNTMGLMQIMNEEEKKKFGF-DMGSIDWKHYITNVHVPGLMRNVMKEKRGETLVGAGNKIPGGAKFYKSK 196 (197)
Q Consensus 128 ~n~~~L~~~ls~~Dr~~F~~-D~~~idW~~Y~~~~~~~Girkyllke~~~~~l~~a~~~~~~~~~~~~~~ 196 (197)
+.+.++.+.|++.+|+.|-. .....+.++--.. ..-+....+.++.++++..+.+
T Consensus 118 ~~l~~~l~~L~~~~r~v~~l~~~~g~s~~eIA~~--------------l~is~~~V~~~l~ra~~~l~~~ 173 (176)
T PRK09638 118 SEMLDALSKLDPEFRAPVILKHYYGYTYEEIAKM--------------LNIPEGTVKSRVHHGIKQLRKE 173 (176)
T ss_pred HHHHHHHHcCCHHHhheeeehhhcCCCHHHHHHH--------------HCCChhHHHHHHHHHHHHHHHH
Confidence 35888999999999999977 5566666655444 1334555666777777666554
No 20
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family. Several PFAM models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Probab=26.38 E-value=65 Score=22.81 Aligned_cols=55 Identities=11% Similarity=0.163 Sum_probs=36.5
Q ss_pred cHHHHHHHccHhhhcccccc-CcccCHHHHHHhccchhhhHhhhcCCCCCChhhhhccccchhhhhhhcC
Q 029185 129 NTMGLMQIMNEEEKKKFGFD-MGSIDWKHYITNVHVPGLMRNVMKEKRGETLVGAGNKIPGGAKFYKSKL 197 (197)
Q Consensus 129 n~~~L~~~ls~~Dr~~F~~D-~~~idW~~Y~~~~~~~Girkyllke~~~~~l~~a~~~~~~~~~~~~~~~ 197 (197)
-+.+..+.|++.+++.+..- .....+.+.-.. ..-+....+..+.+++++.|..|
T Consensus 103 ~l~~~l~~L~~~~~~ii~~~~~~g~s~~eIA~~--------------l~~s~~~v~~~~~~~~~kl~~~l 158 (158)
T TIGR02937 103 ALREALEKLPEREREVLVLRYLEGLSYKEIAEI--------------LGISVGTVKRRLKRARKKLRELL 158 (158)
T ss_pred HHHHHHHhCCHHHHHHHhhHHhcCCCHHHHHHH--------------HCCCHHHHHHHHHHHHHHHHhhC
Confidence 46677788999999887653 455555555444 13456666777777777777653
No 21
>KOG4743 consensus Cyclin-dependent kinase inhibitor [Signal transduction mechanisms]
Probab=26.32 E-value=41 Score=26.77 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=18.4
Q ss_pred cHHHHHHHccHhhhccccccC
Q 029185 129 NTMGLMQIMNEEEKKKFGFDM 149 (197)
Q Consensus 129 n~~~L~~~ls~~Dr~~F~~D~ 149 (197)
-+...+..|.++|++.||||.
T Consensus 34 ~l~s~l~~m~~e~~~KWnFDF 54 (195)
T KOG4743|consen 34 DLNSRLERMNEEDQQKWNFDF 54 (195)
T ss_pred HHHHHHHHHHHHHHhccCccc
Confidence 467788899999999999995
No 22
>TIGR02989 Sig-70_gvs1 RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are abundantly found in the species Rhodopirellula baltica (11), and Verrucomicrobium spinosum (16) and to a lesser extent in Gemmata obscuriglobus (2).
Probab=25.52 E-value=61 Score=23.80 Aligned_cols=55 Identities=7% Similarity=0.077 Sum_probs=37.3
Q ss_pred cHHHHHHHccHhhhccccc-cCcccCHHHHHHhccchhhhHhhhcCCCCCChhhhhccccchhhhhhhcC
Q 029185 129 NTMGLMQIMNEEEKKKFGF-DMGSIDWKHYITNVHVPGLMRNVMKEKRGETLVGAGNKIPGGAKFYKSKL 197 (197)
Q Consensus 129 n~~~L~~~ls~~Dr~~F~~-D~~~idW~~Y~~~~~~~Girkyllke~~~~~l~~a~~~~~~~~~~~~~~~ 197 (197)
.+....+.|++.+|+.|.. .....+-++--.. ..-+....+..+.++|++.+..|
T Consensus 104 ~l~~~i~~L~~~~r~v~~l~~~~g~~~~eIA~~--------------l~is~~tv~~~l~Rar~~Lr~~~ 159 (159)
T TIGR02989 104 ALEGCLEKLPERQRELLQLRYQRGVSLTALAEQ--------------LGRTVNAVYKALSRLRVRLRDCV 159 (159)
T ss_pred HHHHHHHHCCHHHHHHHHHHHhcCCCHHHHHHH--------------hCCCHHHHHHHHHHHHHHHHhcC
Confidence 3677888999999999877 5555555544444 13455666777888888777643
No 23
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=25.13 E-value=1.5e+02 Score=24.97 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=20.8
Q ss_pred eEEEeecCCCCCccHHHHHHHHHhhhhc
Q 029185 24 KVYQIASSVTNPLVTKYLMSLLHEHFDS 51 (197)
Q Consensus 24 ~VYn~~ss~~NPitw~~~~~~~~~~~~~ 51 (197)
.+||++++ +|+++.++.+...+...+
T Consensus 247 ~~yni~~~--~~~s~~~~~~~i~~~~~~ 272 (355)
T PRK10217 247 ETYNIGGH--NERKNLDVVETICELLEE 272 (355)
T ss_pred CeEEeCCC--CcccHHHHHHHHHHHhcc
Confidence 58999887 578999999988776543
No 24
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=25.13 E-value=1.5e+02 Score=23.87 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=20.1
Q ss_pred ceEEEeecCCCCCccHHHHHHHHHhhhh
Q 029185 23 VKVYQIASSVTNPLVTKYLMSLLHEHFD 50 (197)
Q Consensus 23 ~~VYn~~ss~~NPitw~~~~~~~~~~~~ 50 (197)
-.+||++++ ++++|.|+.+.+.+...
T Consensus 204 ~~~~ni~~~--~~~s~~e~~~~i~~~~~ 229 (287)
T TIGR01214 204 RGVYHLANS--GQCSWYEFAQAIFEEAG 229 (287)
T ss_pred CCeEEEECC--CCcCHHHHHHHHHHHhC
Confidence 358999874 47899999998887654
No 25
>TIGR02952 Sig70_famx2 RNA polymerase sigma-70 factor, TIGR02952 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in a limited number of Gram-positive bacterial lineages.
Probab=23.67 E-value=63 Score=23.99 Aligned_cols=55 Identities=7% Similarity=-0.007 Sum_probs=37.2
Q ss_pred cHHHHHHHccHhhhccccc-cCcccCHHHHHHhccchhhhHhhhcCCCCCChhhhhccccchhhhhhhcC
Q 029185 129 NTMGLMQIMNEEEKKKFGF-DMGSIDWKHYITNVHVPGLMRNVMKEKRGETLVGAGNKIPGGAKFYKSKL 197 (197)
Q Consensus 129 n~~~L~~~ls~~Dr~~F~~-D~~~idW~~Y~~~~~~~Girkyllke~~~~~l~~a~~~~~~~~~~~~~~~ 197 (197)
.+.+....|+|.+|+.|-. .....+..+--.. ..-+....+.++.+++++.|..|
T Consensus 115 ~l~~~l~~L~~~~r~vl~l~~~~g~s~~eIA~~--------------l~is~~tv~~~l~ra~~~Lr~~l 170 (170)
T TIGR02952 115 KLLKALKILTPKQQHVIALRFGQNLPIAEVARI--------------LGKTEGAVKILQFRAIKKLARQM 170 (170)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhcCCCHHHHHHH--------------HCCCHHHHHHHHHHHHHHHHHhC
Confidence 4778888999999998876 3444444444333 13456667888888888877654
No 26
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=23.48 E-value=1.3e+02 Score=25.13 Aligned_cols=25 Identities=8% Similarity=0.097 Sum_probs=20.2
Q ss_pred eEEEeecCCCCCccHHHHHHHHHhhhh
Q 029185 24 KVYQIASSVTNPLVTKYLMSLLHEHFD 50 (197)
Q Consensus 24 ~VYn~~ss~~NPitw~~~~~~~~~~~~ 50 (197)
.+||++|+ +|+++.++.+.+.+...
T Consensus 252 ~~yni~~g--~~~s~~e~~~~i~~~~g 276 (340)
T PLN02653 252 DDYVVATE--ESHTVEEFLEEAFGYVG 276 (340)
T ss_pred CcEEecCC--CceeHHHHHHHHHHHcC
Confidence 47999876 57899999998877653
No 27
>PF15550 Draxin: Draxin
Probab=21.94 E-value=39 Score=28.58 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=20.3
Q ss_pred cccCcccCHHHHHHhccchhhhHhhhcCCCCCChhhhhcc
Q 029185 146 GFDMGSIDWKHYITNVHVPGLMRNVMKEKRGETLVGAGNK 185 (197)
Q Consensus 146 ~~D~~~idW~~Y~~~~~~~Girkyllke~~~~~l~~a~~~ 185 (197)
-+|+.-+||.+|=.- .|+..|.|+++
T Consensus 201 TldMaLFDWTDYEDl--------------kP~~wps~kKk 226 (323)
T PF15550_consen 201 TLDMALFDWTDYEDL--------------KPEVWPSAKKK 226 (323)
T ss_pred cccceeccccchhhc--------------CcccCcchhhh
Confidence 579999999999433 36888888873
No 28
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=21.68 E-value=1.5e+02 Score=24.44 Aligned_cols=25 Identities=0% Similarity=0.022 Sum_probs=20.4
Q ss_pred eEEEeecCCCCCccHHHHHHHHHhhhh
Q 029185 24 KVYQIASSVTNPLVTKYLMSLLHEHFD 50 (197)
Q Consensus 24 ~VYn~~ss~~NPitw~~~~~~~~~~~~ 50 (197)
.+||++++ .++++.|+.+.+.+...
T Consensus 231 ~~yni~~~--~~~s~~el~~~i~~~~~ 255 (308)
T PRK11150 231 GIFNCGTG--RAESFQAVADAVLAYHK 255 (308)
T ss_pred CeEEcCCC--CceeHHHHHHHHHHHhC
Confidence 48999886 46899999999988653
No 29
>PRK12516 RNA polymerase sigma factor; Provisional
Probab=21.59 E-value=63 Score=25.00 Aligned_cols=53 Identities=2% Similarity=0.086 Sum_probs=34.2
Q ss_pred cHHHHHHHccHhhhccccc-cCcccCHHHHHHhccchhhhHhhhcCCCCCChhhhhccccchhhhhhh
Q 029185 129 NTMGLMQIMNEEEKKKFGF-DMGSIDWKHYITNVHVPGLMRNVMKEKRGETLVGAGNKIPGGAKFYKS 195 (197)
Q Consensus 129 n~~~L~~~ls~~Dr~~F~~-D~~~idW~~Y~~~~~~~Girkyllke~~~~~l~~a~~~~~~~~~~~~~ 195 (197)
.+...++.|++++|+.|-. ........+--.. ..-+....+.++.++++..+.
T Consensus 109 ~l~~~L~~Lp~~~r~i~~L~~~~g~s~~EIA~~--------------Lgis~~tVk~~l~Rar~~Lr~ 162 (187)
T PRK12516 109 DFRAALDQLPDDQREAIILVGASGFAYEEAAEI--------------CGCAVGTIKSRVNRARQRLQE 162 (187)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCCHHHHHHH--------------HCCCHHHHHHHHHHHHHHHHH
Confidence 4788899999999999977 5566666655444 123444455555555555443
No 30
>TIGR02950 SigM_subfam RNA polymerase sigma factor, SigM family. This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937) and is restricted to certain lineages of the order Bacillales. This family encompasses at least two distinct sigma factors as two proteins are found in each of B. anthracis, B. subtilis subsp. subtilis str. 168, and B. lichiniformis (although these are not apparently the same two in each). One of these is designated as SigM in B. subtilis (Swiss_Prot: SIGM_BACSU) and is activated by various stressors.
Probab=21.47 E-value=1e+02 Score=22.49 Aligned_cols=55 Identities=9% Similarity=0.054 Sum_probs=40.0
Q ss_pred CcHHHHHHHccHhhhccccc-cCcccCHHHHHHhccchhhhHhhhcCCCCCChhhhhccccchhhhhhhc
Q 029185 128 SNTMGLMQIMNEEEKKKFGF-DMGSIDWKHYITNVHVPGLMRNVMKEKRGETLVGAGNKIPGGAKFYKSK 196 (197)
Q Consensus 128 ~n~~~L~~~ls~~Dr~~F~~-D~~~idW~~Y~~~~~~~Girkyllke~~~~~l~~a~~~~~~~~~~~~~~ 196 (197)
+.+.+..+.|++.+++.|-. .....++++--.. ..-+....+..+.+++++.+..
T Consensus 97 ~~l~~~l~~L~~~~r~i~~l~~~~g~s~~eIA~~--------------lgis~~tv~~~l~Ra~~~Lr~~ 152 (154)
T TIGR02950 97 EEITHHLSRLPENYRTVLILREFKEFSYKEIAEL--------------LNLSLAKVKSNLFRARKELKKL 152 (154)
T ss_pred HHHHHHHHhCCHhheeeeeehhhccCcHHHHHHH--------------HCCCHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999976 5677777776666 2445666677777777777653
No 31
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=21.41 E-value=1.7e+02 Score=24.72 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=20.8
Q ss_pred ceEEEeecCCCCCccHHHHHHHHHhhhh
Q 029185 23 VKVYQIASSVTNPLVTKYLMSLLHEHFD 50 (197)
Q Consensus 23 ~~VYn~~ss~~NPitw~~~~~~~~~~~~ 50 (197)
-.+||++++ .+++++|+.+.+.+...
T Consensus 258 ~~~yni~~g--~~~s~~e~~~~i~~~~~ 283 (348)
T PRK15181 258 NKVYNVAVG--DRTSLNELYYLIRDGLN 283 (348)
T ss_pred CCEEEecCC--CcEeHHHHHHHHHHHhC
Confidence 368999876 57899999999887553
No 32
>PRK12542 RNA polymerase sigma factor; Provisional
Probab=20.18 E-value=68 Score=24.49 Aligned_cols=53 Identities=13% Similarity=0.204 Sum_probs=33.3
Q ss_pred cHHHHHHHccHhhhccccc-cCcccCHHHHHHhccchhhhHhhhcCCCCCChhhhhccccchhhhhhh
Q 029185 129 NTMGLMQIMNEEEKKKFGF-DMGSIDWKHYITNVHVPGLMRNVMKEKRGETLVGAGNKIPGGAKFYKS 195 (197)
Q Consensus 129 n~~~L~~~ls~~Dr~~F~~-D~~~idW~~Y~~~~~~~Girkyllke~~~~~l~~a~~~~~~~~~~~~~ 195 (197)
.+.++.+.|+|.+|+.|-. .....+.++=-.. ..-+....+.++.+++++.+.
T Consensus 115 ~l~~~l~~L~~~~r~i~~l~~~~g~s~~EIA~~--------------lgis~~tVk~~l~Rar~~Lr~ 168 (185)
T PRK12542 115 QIDTLLKELNESNRQVFKYKVFYNLTYQEISSV--------------MGITEANVRKQFERARKRVQN 168 (185)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCCHHHHHHH--------------HCCCHHHHHHHHHHHHHHHHH
Confidence 4778999999999999976 4455544443333 134445555566666665554
No 33
>PLN02240 UDP-glucose 4-epimerase
Probab=20.13 E-value=1.9e+02 Score=24.15 Aligned_cols=25 Identities=4% Similarity=0.155 Sum_probs=20.8
Q ss_pred eEEEeecCCCCCccHHHHHHHHHhhhh
Q 029185 24 KVYQIASSVTNPLVTKYLMSLLHEHFD 50 (197)
Q Consensus 24 ~VYn~~ss~~NPitw~~~~~~~~~~~~ 50 (197)
.+||++++ .|+|++|+.+.+.+...
T Consensus 266 ~~yni~~~--~~~s~~el~~~i~~~~g 290 (352)
T PLN02240 266 EAYNLGTG--KGTSVLEMVAAFEKASG 290 (352)
T ss_pred ceEEccCC--CcEeHHHHHHHHHHHhC
Confidence 59999886 47999999999988653
Done!