Query 029185
Match_columns 197
No_of_seqs 116 out of 699
Neff 7.9
Searched_HMMs 13730
Date Mon Mar 25 14:21:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029185.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029185hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rp3a2 a.4.13.2 (A:164-234) S 49.8 2.8 0.0002 24.6 1.2 54 129-196 14-68 (71)
2 d1ek6a_ c.2.1.2 (A:) Uridine d 33.2 28 0.002 25.9 5.0 27 22-50 263-289 (346)
3 d2blla1 c.2.1.2 (A:316-657) Po 32.7 30 0.0022 25.6 5.2 28 23-51 245-272 (342)
4 d1gy8a_ c.2.1.2 (A:) Uridine d 28.0 26 0.0019 26.6 4.0 27 22-50 300-326 (383)
5 d1sxje1 a.80.1.1 (E:256-354) R 27.3 5.7 0.00042 25.5 -0.1 29 153-186 3-31 (99)
6 d1r6da_ c.2.1.2 (A:) dTDP-gluc 27.1 31 0.0023 25.4 4.3 26 23-50 237-262 (322)
7 d1or7a1 a.4.13.2 (A:120-187) S 22.9 19 0.0014 20.5 1.8 54 129-196 11-65 (68)
8 d1y6ia2 a.261.1.1 (A:83-233) M 20.5 6.1 0.00045 27.4 -1.2 36 137-172 48-86 (151)
9 d1db3a_ c.2.1.2 (A:) GDP-manno 20.2 37 0.0027 25.5 3.4 26 23-50 245-270 (357)
10 d1z3xa2 a.261.1.1 (A:88-235) G 18.0 6.7 0.00049 27.1 -1.4 34 137-170 48-84 (148)
No 1
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=49.82 E-value=2.8 Score=24.57 Aligned_cols=54 Identities=7% Similarity=-0.038 Sum_probs=38.7
Q ss_pred cHHHHHHHccHhhhccccc-cCcccCHHHHHHhccchhhhHhhhcCCCCCChhhhhccccchhhhhhhc
Q 029185 129 NTMGLMQIMNEEEKKKFGF-DMGSIDWKHYITNVHVPGLMRNVMKEKRGETLVGAGNKIPGGAKFYKSK 196 (197)
Q Consensus 129 n~~~L~~~ls~~Dr~~F~~-D~~~idW~~Y~~~~~~~Girkyllke~~~~~l~~a~~~~~~~~~~~~~~ 196 (197)
.+.+..+.|+|.+|+.|.. .......++--.. .+-+.+.++.++.+++++.|..
T Consensus 14 ~l~~~l~~L~~~~r~v~~l~~~~~~s~~eIA~~--------------lgis~~tv~~~~~ra~~~Lr~~ 68 (71)
T d1rp3a2 14 KVKEAVSKLPEREKLVIQLIFYEELPAKEVAKI--------------LETSVSRVSQLKAKALERLREM 68 (71)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHTSCCCHHHHHHH--------------TTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhHhCCHHHHHHH--------------HCCCHHHHHHHHHHHHHHHHHH
Confidence 3567788999999999865 4455555555444 2567778888888888887764
No 2
>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.21 E-value=28 Score=25.89 Aligned_cols=27 Identities=4% Similarity=0.213 Sum_probs=22.3
Q ss_pred CceEEEeecCCCCCccHHHHHHHHHhhhh
Q 029185 22 EVKVYQIASSVTNPLVTKYLMSLLHEHFD 50 (197)
Q Consensus 22 ~~~VYn~~ss~~NPitw~~~~~~~~~~~~ 50 (197)
.-.|||++++ +++++.|+.+.+.+..-
T Consensus 263 ~~~i~Ni~~~--~~~s~~dl~~~i~~~~~ 289 (346)
T d1ek6a_ 263 GCRIYNLGTG--TGYSVLQMVQAMEKASG 289 (346)
T ss_dssp CEEEEEECCS--CCEEHHHHHHHHHHHHC
T ss_pred CceEEEeCCC--CcccHHHHHHHHHHHhC
Confidence 4569999885 77999999999988754
No 3
>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}
Probab=32.69 E-value=30 Score=25.57 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=21.8
Q ss_pred ceEEEeecCCCCCccHHHHHHHHHhhhhc
Q 029185 23 VKVYQIASSVTNPLVTKYLMSLLHEHFDS 51 (197)
Q Consensus 23 ~~VYn~~ss~~NPitw~~~~~~~~~~~~~ 51 (197)
-.|||+++ ..+++|+.++.+.+.+....
T Consensus 245 g~~~Nig~-~~~~~t~~~l~~~i~~~~~~ 272 (342)
T d2blla1 245 GEIINIGN-PENEASIEELGEMLLASFEK 272 (342)
T ss_dssp TEEEEECC-TTSEEEHHHHHHHHHHHHHT
T ss_pred CeEEEEec-ccchhHHHHHHHHHHHHhCC
Confidence 46999986 45689999999988776543
No 4
>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}
Probab=28.01 E-value=26 Score=26.62 Aligned_cols=27 Identities=7% Similarity=0.198 Sum_probs=22.3
Q ss_pred CceEEEeecCCCCCccHHHHHHHHHhhhh
Q 029185 22 EVKVYQIASSVTNPLVTKYLMSLLHEHFD 50 (197)
Q Consensus 22 ~~~VYn~~ss~~NPitw~~~~~~~~~~~~ 50 (197)
...|||++|+ +|+++.|+.+.+.+..-
T Consensus 300 ~~~i~Ni~s~--~~~s~~el~~~i~~~~~ 326 (383)
T d1gy8a_ 300 YFSVFNLGTS--RGYSVREVIEVARKTTG 326 (383)
T ss_dssp SEEEEEESCS--CCEEHHHHHHHHHHHHC
T ss_pred CccEEEeCCC--CceeHHHHHHHHHHHhC
Confidence 3579999887 58999999999888643
No 5
>d1sxje1 a.80.1.1 (E:256-354) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.27 E-value=5.7 Score=25.51 Aligned_cols=29 Identities=28% Similarity=0.536 Sum_probs=19.2
Q ss_pred CHHHHHHhccchhhhHhhhcCCCCCChhhhhccc
Q 029185 153 DWKHYITNVHVPGLMRNVMKEKRGETLVGAGNKI 186 (197)
Q Consensus 153 dW~~Y~~~~~~~Girkyllke~~~~~l~~a~~~~ 186 (197)
||+.|+.+ +-+-+++|.+|.+|.+.|.++
T Consensus 3 dWe~~i~~-----ia~~I~~eqsp~~L~~iR~~l 31 (99)
T d1sxje1 3 DWIIVIHK-----LTRKIVKERSVNSLIECRAVL 31 (99)
T ss_dssp HHHHHHHH-----HHHHHHHCCSHHHHHHHHHHH
T ss_pred cHHHHHHH-----HHHHHHHcCCHHHHHHHHHHH
Confidence 79998877 445666676566666665544
No 6
>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}
Probab=27.13 E-value=31 Score=25.36 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=20.2
Q ss_pred ceEEEeecCCCCCccHHHHHHHHHhhhh
Q 029185 23 VKVYQIASSVTNPLVTKYLMSLLHEHFD 50 (197)
Q Consensus 23 ~~VYn~~ss~~NPitw~~~~~~~~~~~~ 50 (197)
-.+||++++ +++++.++.+.+.+...
T Consensus 237 ~~~~ni~~~--~~~s~~e~~~~i~~~~~ 262 (322)
T d1r6da_ 237 GEIYHIGGG--LELTNRELTGILLDSLG 262 (322)
T ss_dssp TCEEEECCC--CEEEHHHHHHHHHHHHT
T ss_pred CCeeEEeec--ccchhHHHHHHHHHHhC
Confidence 359999775 78899999888877653
No 7
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=22.94 E-value=19 Score=20.48 Aligned_cols=54 Identities=6% Similarity=0.097 Sum_probs=32.7
Q ss_pred cHHHHHHHccHhhhccccc-cCcccCHHHHHHhccchhhhHhhhcCCCCCChhhhhccccchhhhhhhc
Q 029185 129 NTMGLMQIMNEEEKKKFGF-DMGSIDWKHYITNVHVPGLMRNVMKEKRGETLVGAGNKIPGGAKFYKSK 196 (197)
Q Consensus 129 n~~~L~~~ls~~Dr~~F~~-D~~~idW~~Y~~~~~~~Girkyllke~~~~~l~~a~~~~~~~~~~~~~~ 196 (197)
-+.+..+.|+|.+|+.|-. ......-++= -.+- +-+...++.++.+|+++.|..
T Consensus 11 ~l~~~l~~Lp~~~r~v~~l~~~~~~s~~eI-------------A~~l-gis~~tv~~~l~ra~~~Lr~~ 65 (68)
T d1or7a1 11 IVFRTIESLPEDLRMAITLRELDGLSYEEI-------------AAIM-DCPVGTVRSRIFRAREAIDNK 65 (68)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHTTCCCHHHH-------------HHHT-TSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCHHHH-------------HHHH-CcCHHHHHHHHHHHHHHHHHH
Confidence 3567788999999998866 1222222111 1121 456667777777777776653
No 8
>d1y6ia2 a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=20.48 E-value=6.1 Score=27.38 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=25.0
Q ss_pred ccHhhhccccc-cCcccC--HHHHHHhccchhhhHhhhc
Q 029185 137 MNEEEKKKFGF-DMGSID--WKHYITNVHVPGLMRNVMK 172 (197)
Q Consensus 137 ls~~Dr~~F~~-D~~~id--W~~Y~~~~~~~Girkyllk 172 (197)
+.++|-+.|+| |.+.|| |.+|-...+=.++++=|-.
T Consensus 48 l~~~di~~fPc~DL~~ID~LW~~yS~GrFGFSVQ~~Iw~ 86 (151)
T d1y6ia2 48 LYFTEVEKFPALDLHTINALWWLHSNGNFGFSVQRRLWL 86 (151)
T ss_dssp CCHHHHTTSCHHHHHHHHHHHHHTTTTCSSHHHHHHHHH
T ss_pred CCHHHHHhCCHHHHHHHHHHHHHhcCCccCcHHHHHHHH
Confidence 56778888888 888888 8888766444445544443
No 9
>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}
Probab=20.17 E-value=37 Score=25.54 Aligned_cols=26 Identities=12% Similarity=0.252 Sum_probs=20.6
Q ss_pred ceEEEeecCCCCCccHHHHHHHHHhhhh
Q 029185 23 VKVYQIASSVTNPLVTKYLMSLLHEHFD 50 (197)
Q Consensus 23 ~~VYn~~ss~~NPitw~~~~~~~~~~~~ 50 (197)
..+||++|+. ++|+.++.+...+...
T Consensus 245 ~~~yni~sg~--~~s~~~~~~~~~~~~g 270 (357)
T d1db3a_ 245 PEDFVIATGV--QYSVRQFVEMAAAQLG 270 (357)
T ss_dssp CCCEEECCCC--CEEHHHHHHHHHHTTT
T ss_pred CCeEEECCCC--ceehHHHHHHHHHHhC
Confidence 3589998874 6899999998887643
No 10
>d1z3xa2 a.261.1.1 (A:88-235) GUN4-like protein Ycf53 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=17.99 E-value=6.7 Score=27.07 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=21.9
Q ss_pred ccHhhhccccc-cCcccC--HHHHHHhccchhhhHhh
Q 029185 137 MNEEEKKKFGF-DMGSID--WKHYITNVHVPGLMRNV 170 (197)
Q Consensus 137 ls~~Dr~~F~~-D~~~id--W~~Y~~~~~~~Girkyl 170 (197)
+.++|-+.|+| |.+.|| |.+|-...+=..+++=|
T Consensus 48 l~~~di~~fPc~dL~~ID~LW~~yS~G~FGFSVQk~I 84 (148)
T d1z3xa2 48 LYFTEVEQLPIPDLQTIDQLWLAFSLGRFGYSVQRQL 84 (148)
T ss_dssp CCHHHHHTSCHHHHHHHHHHHHHTTTTCCSHHHHHHH
T ss_pred CCHHHHhhCCHHHHHHHHHHHHHhcCCccCcHHHHHH
Confidence 55667777888 778888 87776664434444433
Done!