BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029186
         (197 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3T4W|A Chain A, The Crystal Structure Of Mandelate RacemaseMUCONATE
          LACTONIZING Enzyme From Sulfitobacter Sp
 pdb|3T4W|B Chain B, The Crystal Structure Of Mandelate RacemaseMUCONATE
          LACTONIZING Enzyme From Sulfitobacter Sp
 pdb|3T4W|C Chain C, The Crystal Structure Of Mandelate RacemaseMUCONATE
          LACTONIZING Enzyme From Sulfitobacter Sp
 pdb|3T4W|D Chain D, The Crystal Structure Of Mandelate RacemaseMUCONATE
          LACTONIZING Enzyme From Sulfitobacter Sp
          Length = 432

 Score = 28.5 bits (62), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 76 CFSVYVGPQRQRFVIKTEFANH 97
          C++  VGPQ  R VI+  FA H
Sbjct: 62 CYAASVGPQAMRAVIEDVFARH 83


>pdb|1FGJ|A Chain A, X-Ray Structure Of Hydroxylamine Oxidoreductase
 pdb|1FGJ|B Chain B, X-Ray Structure Of Hydroxylamine Oxidoreductase
          Length = 546

 Score = 28.1 bits (61), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 66  NKGCQVAPE--GCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYENQGPIMLPC 123
           +KG Q AP    C   Y G        KT +AN+P    + E+  S++        +L C
Sbjct: 301 SKGGQNAPTCAACHMEYEGEYTHNITRKTRWANYPFVPGIAENITSDWSEARLDSWVLTC 360


>pdb|1JLN|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
           Tyrosine Phosphatase Ptp-SlBR7
          Length = 297

 Score = 26.9 bits (58), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 10/37 (27%), Positives = 20/37 (54%)

Query: 91  KTEFANHPLFKILLEDAESEYGYENQGPIMLPCDVDL 127
           KT  +  PL +++L+  E     E +GP+++ C   +
Sbjct: 197 KTPDSAQPLLQLMLDVEEDRLASEGRGPVVVHCSAGI 233


>pdb|2PVP|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase From
           Helicobacter Pylori
 pdb|2PVP|B Chain B, Crystal Structure Of D-Alanine-D-Alanine Ligase From
           Helicobacter Pylori
          Length = 367

 Score = 26.9 bits (58), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 64  YNNKGCQVAPEGCFSVYVGPQRQRFV 89
           YN  GC++  + CFS    P +Q F+
Sbjct: 236 YNLAGCKIKKDFCFSYIEEPNKQEFL 261


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,293,375
Number of Sequences: 62578
Number of extensions: 183401
Number of successful extensions: 195
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 4
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)