Query 029186
Match_columns 197
No_of_seqs 158 out of 636
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 14:22:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029186.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029186hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tix_A Ubiquitin-like protein 56.6 8.8 0.0003 32.6 3.6 46 67-114 48-93 (207)
2 3drz_A BTB/POZ domain-containi 50.2 44 0.0015 24.2 6.1 62 74-138 5-71 (107)
3 2vpk_A Myoneurin; transcriptio 43.6 28 0.00096 24.5 4.1 54 77-139 25-83 (116)
4 1und_A Advillin, P92; actin bi 42.5 6.8 0.00023 24.7 0.5 19 93-111 1-19 (37)
5 2al3_A TUG long isoform; TUG U 42.5 20 0.00069 26.6 3.2 40 74-115 8-47 (90)
6 2nz0_B Potassium voltage-gated 41.0 44 0.0015 25.9 5.2 64 72-139 32-97 (140)
7 2vkp_A BTB/POZ domain-containi 38.6 43 0.0015 23.0 4.3 59 77-139 11-74 (109)
8 3ga1_A Nucleus accumbens-assoc 38.4 46 0.0016 23.9 4.6 53 77-138 36-92 (129)
9 1r29_A B-cell lymphoma 6 prote 37.1 32 0.0011 24.6 3.5 57 77-139 32-92 (127)
10 1vd2_A Protein kinase C, IOTA 35.7 43 0.0015 24.5 4.0 38 80-121 12-49 (89)
11 2if5_A Zinc finger and BTB dom 29.5 71 0.0024 22.4 4.3 58 77-139 28-88 (120)
12 1s1g_A Potassium voltage-gated 26.7 47 0.0016 25.1 3.1 63 73-139 11-75 (124)
13 3ohu_A Transcription regulator 26.3 45 0.0016 23.7 2.8 55 77-138 35-93 (125)
14 3b84_A Zinc finger and BTB dom 23.8 91 0.0031 22.0 4.0 54 77-139 27-83 (119)
15 1yu8_X Villin; alpha helix, 3- 22.5 24 0.00083 24.8 0.6 19 93-111 31-49 (67)
16 2ppi_A Gigaxonin; BTB domain, 20.9 1.5E+02 0.0052 21.8 4.9 60 77-139 50-112 (144)
17 2q81_A MIZ-1 protein; BTB/POZ 20.1 1E+02 0.0035 21.7 3.6 53 77-139 30-85 (119)
No 1
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=56.59 E-value=8.8 Score=32.60 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=28.0
Q ss_pred CCCcCCCCCeEEEEecCCCeeEEEEeccCCcHHHHHHHHHHHHhcCcC
Q 029186 67 KGCQVAPEGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYE 114 (197)
Q Consensus 67 ~~~~~vpkG~~aVYVG~e~rRFvVpv~yLnhPlF~eLLe~AeEEfGf~ 114 (197)
.+|..-|..|+.+-|..+.....+.| -.+--|+.|++.-.+..|..
T Consensus 48 ~KP~~dp~e~InLKVk~dG~eV~FKI--KrtTpL~KLmeAYcERqGL~ 93 (207)
T 3tix_A 48 VKPEVKPETHINLKVSDGSSEIFFKI--KKTTPLRRLMEAFAKRQGKE 93 (207)
T ss_dssp -------CCEEEEEEECSSCEEEEEE--ETTSCTHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCcEEEEEecCCCEEEEEE--ccCChHHHHHHHHHHHhCCC
Confidence 44555578899999976555444444 34666788998888887754
No 2
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=50.17 E-value=44 Score=24.19 Aligned_cols=62 Identities=18% Similarity=0.248 Sum_probs=45.8
Q ss_pred CCeEEEEecCCCeeEEEEeccCC-cH--HHHHHHHHHHHhcC--cCCCCCeEecCcHHHHHHHHHHHhcC
Q 029186 74 EGCFSVYVGPQRQRFVIKTEFAN-HP--LFKILLEDAESEYG--YENQGPIMLPCDVDLFFKVLAELEST 138 (197)
Q Consensus 74 kG~~aVYVG~e~rRFvVpv~yLn-hP--lF~eLLe~AeEEfG--f~~~G~L~IPCdv~~Fe~vL~~i~s~ 138 (197)
.-.+.+-||. ++|.+..+-|. +| .|..|...- .++. .+.+|.+-|..+...|++||.-++.+
T Consensus 5 ~~~v~LNVGG--~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g 71 (107)
T 3drz_A 5 SKWVRLNVGG--TYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHG 71 (107)
T ss_dssp CCEEEEEETT--EEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHHHHS
T ss_pred CCEEEEEECC--EEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHhCCC
Confidence 3567889994 89999987664 34 566664321 1232 34678999999999999999999886
No 3
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=43.63 E-value=28 Score=24.46 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=40.8
Q ss_pred EEEEecCCCeeEEEEeccC--CcHHHHHHHHHHHHhcCcCCCCCeEec---CcHHHHHHHHHHHhcCC
Q 029186 77 FSVYVGPQRQRFVIKTEFA--NHPLFKILLEDAESEYGYENQGPIMLP---CDVDLFFKVLAELESTG 139 (197)
Q Consensus 77 ~aVYVG~e~rRFvVpv~yL--nhPlF~eLLe~AeEEfGf~~~G~L~IP---Cdv~~Fe~vL~~i~s~~ 139 (197)
+.+.||+ ++|-+.-..| ..|.|+.++... .+..|.|+ .+.+.|+.+|.-+=.+.
T Consensus 25 v~l~v~~--~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~~~Yt~~ 83 (116)
T 2vpk_A 25 CTIVIGE--FQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLEFIYTGT 83 (116)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHHHHHHSC
T ss_pred EEEEECC--EEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHHHHcCCC
Confidence 3456664 6788877776 579999988654 35678888 69999999999887753
No 4
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=42.51 E-value=6.8 Score=24.71 Aligned_cols=19 Identities=5% Similarity=0.219 Sum_probs=17.1
Q ss_pred ccCCcHHHHHHHHHHHHhc
Q 029186 93 EFANHPLFKILLEDAESEY 111 (197)
Q Consensus 93 ~yLnhPlF~eLLe~AeEEf 111 (197)
.||+.-.|++++.++.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999997
No 5
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=42.50 E-value=20 Score=26.55 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=28.7
Q ss_pred CCeEEEEecCCCeeEEEEeccCCcHHHHHHHHHHHHhcCcCC
Q 029186 74 EGCFSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYEN 115 (197)
Q Consensus 74 kG~~aVYVG~e~rRFvVpv~yLnhPlF~eLLe~AeEEfGf~~ 115 (197)
.|--++++....+|+.|++.- .-.+.++|++|-+.|||+.
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp--~t~L~~VL~eaC~K~gl~~ 47 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTP--STVLLQVLEDTCRRQDFNP 47 (90)
T ss_dssp --CCEEEECTTSCEEEECCCT--TSBHHHHHHHHHHHTTCCG
T ss_pred CccEEEEEcCCCcEEEEEECC--CCCHHHHHHHHHHHhCCCh
Confidence 344455555567999999943 3367889999999999974
No 6
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=40.95 E-value=44 Score=25.90 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=45.9
Q ss_pred CCCCeEEEEecCCCeeEEEEeccC-CcHHHHHHHHHHHHhcCcC-CCCCeEecCcHHHHHHHHHHHhcCC
Q 029186 72 APEGCFSVYVGPQRQRFVIKTEFA-NHPLFKILLEDAESEYGYE-NQGPIMLPCDVDLFFKVLAELESTG 139 (197)
Q Consensus 72 vpkG~~aVYVG~e~rRFvVpv~yL-nhPlF~eLLe~AeEEfGf~-~~G~L~IPCdv~~Fe~vL~~i~s~~ 139 (197)
.....+.+-||. .||.+..+-| ++|. .+|..++...-|. .+|.+-|-.|-..|++||.-++.+.
T Consensus 32 ~~~~~V~LNVGG--~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR~G~ 97 (140)
T 2nz0_B 32 RQDELIVLNVSG--RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGK 97 (140)
T ss_dssp TCCCEEEEEETT--EEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHHHSS
T ss_pred CCCCEEEEEECC--EEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHhcCC
Confidence 356788899995 8999998655 3332 1333343333343 5789999999999999999999863
No 7
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=38.55 E-value=43 Score=22.98 Aligned_cols=59 Identities=17% Similarity=0.258 Sum_probs=41.1
Q ss_pred EEEEecC--CCeeEEEEeccC--CcHHHHHHHHHHHHhcCcCCCCCeEec-CcHHHHHHHHHHHhcCC
Q 029186 77 FSVYVGP--QRQRFVIKTEFA--NHPLFKILLEDAESEYGYENQGPIMLP-CDVDLFFKVLAELESTG 139 (197)
Q Consensus 77 ~aVYVG~--e~rRFvVpv~yL--nhPlF~eLLe~AeEEfGf~~~G~L~IP-Cdv~~Fe~vL~~i~s~~ 139 (197)
+.+.||+ +.++|-+.-..| ..|.|+.++...-.|- . ..|.|| .+.+.|+.+|.-+=.+.
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~---~-~~i~l~~~~~~~f~~~l~~iYt~~ 74 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---K-SEIHIPDVEPAAFLILLKYMYSDE 74 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC---C-CeEEeCCCCHHHHHHHHHHHcCCC
Confidence 4566665 247888888777 5899999997543331 2 678897 69999999999887753
No 8
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=38.44 E-value=46 Score=23.90 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=40.7
Q ss_pred EEEEecCCCeeEEEEeccCC--cHHHHHHHHHHHHhcCcCCCCCeEec--CcHHHHHHHHHHHhcC
Q 029186 77 FSVYVGPQRQRFVIKTEFAN--HPLFKILLEDAESEYGYENQGPIMLP--CDVDLFFKVLAELEST 138 (197)
Q Consensus 77 ~aVYVG~e~rRFvVpv~yLn--hPlF~eLLe~AeEEfGf~~~G~L~IP--Cdv~~Fe~vL~~i~s~ 138 (197)
+.+.||+ ++|-+.-..|. .|.|++++... ....|.|| .+.+.|+.+|.-|=.+
T Consensus 36 v~l~v~~--~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~~~~~~f~~ll~~iYtg 92 (129)
T 3ga1_A 36 VSVVVKG--HAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAAVQPQSFQQILSFCYTG 92 (129)
T ss_dssp EEEEETT--EEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTTCCHHHHHHHHHHHHHS
T ss_pred eEEEECC--EEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCCCCHHHHHHHHHHHhCC
Confidence 4566764 77877766664 69999998775 45679996 8999999999988654
No 9
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=37.10 E-value=32 Score=24.58 Aligned_cols=57 Identities=19% Similarity=0.228 Sum_probs=42.9
Q ss_pred EEEEecCCCeeEEEEeccC--CcHHHHHHHHHHHHhcCcCCCCCeEe-c-CcHHHHHHHHHHHhcCC
Q 029186 77 FSVYVGPQRQRFVIKTEFA--NHPLFKILLEDAESEYGYENQGPIML-P-CDVDLFFKVLAELESTG 139 (197)
Q Consensus 77 ~aVYVG~e~rRFvVpv~yL--nhPlF~eLLe~AeEEfGf~~~G~L~I-P-Cdv~~Fe~vL~~i~s~~ 139 (197)
+.+.|++ ++|-+.-..| ..|.|+.++...-.| ....|.| + .+.+.|+.+|.-|=.+.
T Consensus 32 v~l~v~~--~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~~~Ytg~ 92 (127)
T 1r29_A 32 VVIVVSR--EQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLDFMYTSR 92 (127)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHHHHHHSC
T ss_pred EEEEECC--EEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHHHHcCCC
Confidence 4456664 6787777777 689999999765444 4667999 4 68999999999887653
No 10
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=35.70 E-value=43 Score=24.48 Aligned_cols=38 Identities=11% Similarity=0.127 Sum_probs=27.7
Q ss_pred EecCCCeeEEEEeccCCcHHHHHHHHHHHHhcCcCCCCCeEe
Q 029186 80 YVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYENQGPIML 121 (197)
Q Consensus 80 YVG~e~rRFvVpv~yLnhPlF~eLLe~AeEEfGf~~~G~L~I 121 (197)
|-.++-.|+.||. ..-|++|.++..+-|++..+.++++
T Consensus 12 ~~~gdi~~~~v~~----~i~~~~L~~kv~~~~~~~~~~~f~l 49 (89)
T 1vd2_A 12 YYRGDIMITHFEP----SISFEGLCNEVRDMCSFDNEQLFTM 49 (89)
T ss_dssp ESSSCEEEEEECT----TCCHHHHHHHHHHHTTCCSSCCEEE
T ss_pred EeCCeEEEEECCC----CCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 3333467777776 5689999999999999875555544
No 11
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=29.46 E-value=71 Score=22.35 Aligned_cols=58 Identities=10% Similarity=0.130 Sum_probs=40.3
Q ss_pred EEEEecCCCeeEEEEeccC--CcHHHHHHHHHHHHhcCcCCCCCeEec-CcHHHHHHHHHHHhcCC
Q 029186 77 FSVYVGPQRQRFVIKTEFA--NHPLFKILLEDAESEYGYENQGPIMLP-CDVDLFFKVLAELESTG 139 (197)
Q Consensus 77 ~aVYVG~e~rRFvVpv~yL--nhPlF~eLLe~AeEEfGf~~~G~L~IP-Cdv~~Fe~vL~~i~s~~ 139 (197)
+.+.||+ ++|-+.-..| ..|.|+.++...-.| .....|.|+ .+.+.|+.+|.-+=.+.
T Consensus 28 v~l~v~~--~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~ll~~~Yt~~ 88 (120)
T 2if5_A 28 VVILVEG--REFPTHRSVLAACSQYFKKLFTSGAVV---DQQNVYEIDFVSAEALTALMDFAYTAT 88 (120)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHHC--------CCSEEECCSSCHHHHHHHHHHHHHSC
T ss_pred eEEEECC--EEEeHHHHHHHHhCHHHHHHhcCCccc---cCCceEEeCCCCHHHHHHHHHHHcCCC
Confidence 3455664 7888877777 479999998754333 245668888 58999999999887653
No 12
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=26.73 E-value=47 Score=25.12 Aligned_cols=63 Identities=19% Similarity=0.223 Sum_probs=45.0
Q ss_pred CCCeEEEEecCCCeeEEEEeccCC-cHHHHHHHHHHHHhcCcC-CCCCeEecCcHHHHHHHHHHHhcCC
Q 029186 73 PEGCFSVYVGPQRQRFVIKTEFAN-HPLFKILLEDAESEYGYE-NQGPIMLPCDVDLFFKVLAELESTG 139 (197)
Q Consensus 73 pkG~~aVYVG~e~rRFvVpv~yLn-hPlF~eLLe~AeEEfGf~-~~G~L~IPCdv~~Fe~vL~~i~s~~ 139 (197)
....+.+-||. .||.+..+-|. +|. .+|..++...-+. .+|.+-|..|...|++||.-++.+.
T Consensus 11 ~~~~V~LNVGG--~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~G~ 75 (124)
T 1s1g_A 11 QDELIVLNVSG--RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGK 75 (124)
T ss_dssp -CCEEEEEETT--EEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHHHHSC
T ss_pred CCCEEEEEeCC--EEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHHHhcCC
Confidence 45678889995 89999986653 332 1333343333343 5799999999999999999999863
No 13
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=26.27 E-value=45 Score=23.66 Aligned_cols=55 Identities=15% Similarity=0.103 Sum_probs=40.0
Q ss_pred EEEEecCCCeeEEEEeccCC--cHHHHHHHHHHHHhcCcCCCCCeEec--CcHHHHHHHHHHHhcC
Q 029186 77 FSVYVGPQRQRFVIKTEFAN--HPLFKILLEDAESEYGYENQGPIMLP--CDVDLFFKVLAELEST 138 (197)
Q Consensus 77 ~aVYVG~e~rRFvVpv~yLn--hPlF~eLLe~AeEEfGf~~~G~L~IP--Cdv~~Fe~vL~~i~s~ 138 (197)
+.+.||+ ++|-+.-..|. .|.|++++.....| ...|.|| .+.+.|+.+|.-|=.+
T Consensus 35 v~l~v~~--~~f~aHk~vLaa~S~yF~~~f~~~~~e-----~~~i~l~~~~~~~~f~~~l~~iYtg 93 (125)
T 3ohu_A 35 VTLIVER--KEFRAHRAVLAACSEYFWQALVGQTKN-----DLVVSLPEEVTARGFGPLLQFAYTA 93 (125)
T ss_dssp EEEEETT--EEEEECHHHHHHHBHHHHHHHTTCCCS-----SCEEECCTTCCHHHHHHHHHHHTTS
T ss_pred eEEEECC--EEEechHHHHHHcCHHHHHHhcCCCCC-----CcEEEeCCCCCHHHHHHHHHhHcCC
Confidence 4566764 67777766664 58999998754332 5568887 7999999999988654
No 14
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=23.84 E-value=91 Score=22.00 Aligned_cols=54 Identities=20% Similarity=0.229 Sum_probs=39.6
Q ss_pred EEEEecCCCeeEEEEeccC--CcHHHHHHHHHHHHhcCcCCCCCeEec-CcHHHHHHHHHHHhcCC
Q 029186 77 FSVYVGPQRQRFVIKTEFA--NHPLFKILLEDAESEYGYENQGPIMLP-CDVDLFFKVLAELESTG 139 (197)
Q Consensus 77 ~aVYVG~e~rRFvVpv~yL--nhPlF~eLLe~AeEEfGf~~~G~L~IP-Cdv~~Fe~vL~~i~s~~ 139 (197)
+.+.||+ ++|-+.-..| ..|.|+.++... . ...|.|| .+.+.|+.+|.-|=.+.
T Consensus 27 v~l~v~~--~~f~aHk~vLaa~S~yF~~~f~~~-----~--~~~i~l~~~~~~~f~~ll~~iYtg~ 83 (119)
T 3b84_A 27 ATLDVGG--LVFKAHWSVLACCSHFFQSLYGDG-----S--GGSVVLPAGFAEIFGLLLDFFYTGH 83 (119)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHTTT-----T--CCCEEECGGGHHHHHHHHHHHHHSC
T ss_pred eEEEECC--EEEEeeHHHHhhcCHHHHHHHCCC-----C--CCeEEeCCCCHHHHHHHHHHHcCCC
Confidence 3455664 6787777666 479999988652 1 5679998 57889999999887653
No 15
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=22.45 E-value=24 Score=24.78 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=18.1
Q ss_pred ccCCcHHHHHHHHHHHHhc
Q 029186 93 EFANHPLFKILLEDAESEY 111 (197)
Q Consensus 93 ~yLnhPlF~eLLe~AeEEf 111 (197)
.||+.-.|++++.++.+||
T Consensus 31 ~yLsdedF~~vFgms~~eF 49 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAF 49 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHH
T ss_pred hcCCHHHHHHHHCcCHHHH
Confidence 7999999999999999997
No 16
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=20.86 E-value=1.5e+02 Score=21.79 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=41.0
Q ss_pred EEEEecCCCeeEEEEeccCC--cHHHHHHHHHHHHhcCcCCCCCeEecC-cHHHHHHHHHHHhcCC
Q 029186 77 FSVYVGPQRQRFVIKTEFAN--HPLFKILLEDAESEYGYENQGPIMLPC-DVDLFFKVLAELESTG 139 (197)
Q Consensus 77 ~aVYVG~e~rRFvVpv~yLn--hPlF~eLLe~AeEEfGf~~~G~L~IPC-dv~~Fe~vL~~i~s~~ 139 (197)
+.+.||+ ++|-+.-..|. .|.|+.++...-.|- -.....|.||- +.+.|+.+|.-|=.+.
T Consensus 50 v~l~v~~--~~f~aHk~vLaa~S~yF~~mf~~~~~e~-e~~~~~I~l~~v~~~~f~~lL~fiYtg~ 112 (144)
T 2ppi_A 50 AHLVLDG--EEIPVQKNILAAASPYIRTKLNYNPPKD-DGSTYKIELEGISVMVMREILDYIFSGQ 112 (144)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHHHCC------CCCEEECCSSCHHHHHHHHHHHTTSC
T ss_pred eEEEECC--EEEehHHHHHHHcCHHHHHHHcCCCccc-cCCCcEEEeCCCCHHHHHHHHHHHhCCC
Confidence 4455664 78877777664 799999997532110 02456788984 8999999999887653
No 17
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=20.05 E-value=1e+02 Score=21.73 Aligned_cols=53 Identities=17% Similarity=0.183 Sum_probs=39.2
Q ss_pred EEEEecCCCeeEEEEeccC--CcHHHHHHHHHHHHhcCcCCCCCeEecC-cHHHHHHHHHHHhcCC
Q 029186 77 FSVYVGPQRQRFVIKTEFA--NHPLFKILLEDAESEYGYENQGPIMLPC-DVDLFFKVLAELESTG 139 (197)
Q Consensus 77 ~aVYVG~e~rRFvVpv~yL--nhPlF~eLLe~AeEEfGf~~~G~L~IPC-dv~~Fe~vL~~i~s~~ 139 (197)
+.+.||+ ++|-+.-..| ..|.|++++.. +...|.|+- +.+.|+.+|.-+=.+.
T Consensus 30 v~l~v~~--~~~~aHk~vLaa~S~yF~~~f~~--------~~~~i~l~~~~~~~f~~ll~~~Ytg~ 85 (119)
T 2q81_A 30 CTFVVDG--VHFKAHKAVLAACSEYFKMLFVD--------QKDVVHLDISNAAGLGQVLEFMYTAK 85 (119)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHHH--------CCSGGGGGGCCHHHHHHHHHHHHHSC
T ss_pred eEEEECC--EEEehhHHHHHHcCHHHHHHHcC--------CCCEEEeCCCCHHHHHHHHHHHcCCC
Confidence 3455664 7888887777 47999999985 234577775 7899999999887653
Done!