Query 029186
Match_columns 197
No_of_seqs 158 out of 636
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 14:22:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029186.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029186hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bkfa1 d.15.2.2 (A:1-85) Next 44.5 18 0.0013 24.8 4.9 53 77-131 7-68 (85)
2 d1unda_ a.14.1.1 (A:) Advillin 42.9 3.1 0.00023 24.7 0.5 18 94-111 1-18 (36)
3 d1y6ia2 a.261.1.1 (A:83-233) M 37.3 1.3 9.2E-05 33.9 -2.5 31 70-102 118-148 (151)
4 d1nn7a_ d.42.1.2 (A:) Potassiu 33.3 3.7 0.00027 28.6 -0.3 59 77-139 2-62 (105)
5 d1z3xa2 a.261.1.1 (A:88-235) G 28.7 0.98 7.2E-05 34.4 -4.4 30 70-101 118-147 (148)
6 d1vi7a2 d.58.11.2 (A:138-208) 28.4 49 0.0036 20.3 4.8 54 85-138 2-61 (71)
7 d1t1da_ d.42.1.2 (A:) Shaker p 24.0 18 0.0013 24.7 2.0 58 77-138 3-63 (100)
8 d1yu5x1 a.14.1.1 (X:10-76) Vil 23.7 10 0.00076 25.1 0.6 19 93-111 31-49 (67)
9 d3kvta_ d.42.1.2 (A:) akv3.1 v 22.1 9 0.00066 26.3 0.1 59 76-139 3-65 (103)
10 d1qusa_ d.2.1.6 (A:) 36 kDa so 19.7 27 0.0019 28.9 2.6 24 92-115 13-36 (322)
No 1
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.54 E-value=18 Score=24.81 Aligned_cols=53 Identities=6% Similarity=0.119 Sum_probs=38.0
Q ss_pred EEEEecCCCeeEEEEeccCCcHHHHHHHHHHHHhcCcC--------CC-CCeEecCcHHHHHHH
Q 029186 77 FSVYVGPQRQRFVIKTEFANHPLFKILLEDAESEYGYE--------NQ-GPIMLPCDVDLFFKV 131 (197)
Q Consensus 77 ~aVYVG~e~rRFvVpv~yLnhPlF~eLLe~AeEEfGf~--------~~-G~L~IPCdv~~Fe~v 131 (197)
|-|..|++..||.|+.. +++.|.+|..+.+.-|+.+ .+ --++|.|+.++=|.+
T Consensus 7 vKvtf~~dt~RF~ls~~--~~~~~~~L~~~i~~rf~l~~~~lkY~Ddd~e~v~l~~d~dl~E~~ 68 (85)
T d2bkfa1 7 LNVTFKNEIQSFLVSDP--ENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEAL 68 (85)
T ss_dssp EEEEETTEEEEEEESCG--GGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHHHHHHH
T ss_pred EEEEECCceEEEEecCC--CCCcHHHHHHHHHHhcCcccceEEEEcCCCCEEEEecHHHHHHHH
Confidence 34455777899998543 3778999999999988853 23 347899998765543
No 2
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.85 E-value=3.1 Score=24.73 Aligned_cols=18 Identities=6% Similarity=0.222 Sum_probs=16.8
Q ss_pred cCCcHHHHHHHHHHHHhc
Q 029186 94 FANHPLFKILLEDAESEY 111 (197)
Q Consensus 94 yLnhPlF~eLLe~AeEEf 111 (197)
||+.-.|++++.++.+||
T Consensus 1 yLsd~dF~~vFgmsr~eF 18 (36)
T d1unda_ 1 YLSEQDFVSVFGITRGQF 18 (36)
T ss_dssp CCCHHHHHHHHSSCHHHH
T ss_pred CCCHHHHHHHHCcCHHHH
Confidence 899999999999999997
No 3
>d1y6ia2 a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=37.33 E-value=1.3 Score=33.88 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=19.8
Q ss_pred cCCCCCeEEEEecCCCeeEEEEeccCCcHHHHH
Q 029186 70 QVAPEGCFSVYVGPQRQRFVIKTEFANHPLFKI 102 (197)
Q Consensus 70 ~~vpkG~~aVYVG~e~rRFvVpv~yLnhPlF~e 102 (197)
..+|+||+|+.-.--.-| +--..|+||.|.+
T Consensus 118 l~AP~GHLP~~~~lrG~~--~~~~l~~h~~~~~ 148 (151)
T d1y6ia2 118 LSAPQGHLPLLNQLRGVR--VAESLYRHPVWSQ 148 (151)
T ss_dssp TTSCTTCCSCCCCTTCTH--HHHHHHTSTHHHH
T ss_pred CCCCCCCCCccchhhhHH--HHHHHHcCcchhh
Confidence 358999999864211111 2335889999865
No 4
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=33.31 E-value=3.7 Score=28.58 Aligned_cols=59 Identities=19% Similarity=0.183 Sum_probs=41.2
Q ss_pred EEEEecCCCeeEEEEeccC-CcHHHHHHHHHHH-HhcCcCCCCCeEecCcHHHHHHHHHHHhcCC
Q 029186 77 FSVYVGPQRQRFVIKTEFA-NHPLFKILLEDAE-SEYGYENQGPIMLPCDVDLFFKVLAELESTG 139 (197)
Q Consensus 77 ~aVYVG~e~rRFvVpv~yL-nhPlF~eLLe~Ae-EEfGf~~~G~L~IPCdv~~Fe~vL~~i~s~~ 139 (197)
+.+-||. .+|.+..+-| ++|.. +|.... ..+--+.+|.+-|--|...|++||.-++.+.
T Consensus 2 I~LNVGG--~~f~t~~~TL~~~p~s--~l~~~~~~~~~~~~~~~~FiDRdp~~F~~IL~ylR~G~ 62 (105)
T d1nn7a_ 2 IVLNVSG--TRFQTWQDTLERYPDT--LLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGK 62 (105)
T ss_dssp EEEEETT--EEEEECHHHHHTSCSS--STTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHHHSC
T ss_pred EEEEECC--EEEEEeHHHHhcCCCC--CccccccccCcCCCCCcEEEeCCHHHHHHHHHHHhcCc
Confidence 5677885 8999998766 45431 112222 2222236888999999999999999999763
No 5
>d1z3xa2 a.261.1.1 (A:88-235) GUN4-like protein Ycf53 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=28.73 E-value=0.98 Score=34.37 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=19.9
Q ss_pred cCCCCCeEEEEecCCCeeEEEEeccCCcHHHH
Q 029186 70 QVAPEGCFSVYVGPQRQRFVIKTEFANHPLFK 101 (197)
Q Consensus 70 ~~vpkG~~aVYVG~e~rRFvVpv~yLnhPlF~ 101 (197)
..+|+||+|+.-. .+-+.|=-.+|+||.|.
T Consensus 118 l~AP~GHLP~~~~--lrg~~~~~~~l~h~a~~ 147 (148)
T d1z3xa2 118 LSAPRGHLPLTNQ--LRGVQVLNALLNHPAWT 147 (148)
T ss_dssp TTSCTTCCSCCCC--TTCSHHHHHHHTCGGGG
T ss_pred CCCCCCCCCcCCc--cchHHHHHHHhcCcccc
Confidence 3589999997532 34444445778888763
No 6
>d1vi7a2 d.58.11.2 (A:138-208) Hypothetical protein YigZ, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=28.43 E-value=49 Score=20.26 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=38.9
Q ss_pred CeeEEEEeccCCcHHHHHHHHHHH-----HhcCcCCCCCeEecC-cHHHHHHHHHHHhcC
Q 029186 85 RQRFVIKTEFANHPLFKILLEDAE-----SEYGYENQGPIMLPC-DVDLFFKVLAELEST 138 (197)
Q Consensus 85 ~rRFvVpv~yLnhPlF~eLLe~Ae-----EEfGf~~~G~L~IPC-dv~~Fe~vL~~i~s~ 138 (197)
+.+|.+.++|-....++.||++.. ++|+=.-.=.|.||. +++.|..-|..+.++
T Consensus 2 ~t~~~l~~dY~~~~~v~~~L~~~~~~i~~~~y~~~V~l~v~vp~~~~~~f~~~l~d~t~G 61 (71)
T d1vi7a2 2 LTEYTLQCEYHQLTGIEALLGQCDGKIINSDYQAFVLLRVALPAAKVAEFSAKLADFSRG 61 (71)
T ss_dssp CEEEEEEECTTTHHHHHHHHHHTTCEEEEEEESSSEEEEEEECSSTHHHHHHHHHHHHTT
T ss_pred ceEEEEEeccccHHHHHHHHHHCCCEEEeeeeccEEEEEEEECHHHHHHHHHHHHHhCCC
Confidence 468999999999999999999874 345433222244554 678888888777665
No 7
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}
Probab=23.99 E-value=18 Score=24.68 Aligned_cols=58 Identities=17% Similarity=0.132 Sum_probs=40.1
Q ss_pred EEEEecCCCeeEEEEeccCCc-H--HHHHHHHHHHHhcCcCCCCCeEecCcHHHHHHHHHHHhcC
Q 029186 77 FSVYVGPQRQRFVIKTEFANH-P--LFKILLEDAESEYGYENQGPIMLPCDVDLFFKVLAELEST 138 (197)
Q Consensus 77 ~aVYVG~e~rRFvVpv~yLnh-P--lF~eLLe~AeEEfGf~~~G~L~IPCdv~~Fe~vL~~i~s~ 138 (197)
+.+-||. ++|.+..+-|.. | .|..|.... .+--+.+|.+-|--|...|++||.-+..+
T Consensus 3 I~LNVGG--~~f~t~~~tL~~~p~s~l~~l~~~~--~~~~~~~g~~FiDRdp~~F~~IL~flR~~ 63 (100)
T d1t1da_ 3 VVINVSG--LRFETQLKTLNQFPDTLLGNPQKRN--RYYDPLRNEYFFDRNRPSFDAILYFYQSG 63 (100)
T ss_dssp EEEEETT--EEEEEEHHHHHTSTTSTTTCHHHHG--GGEETTTTEEEECSCSTTHHHHHHHHHTT
T ss_pred EEEEECC--EEEEEeHHHHhhCCCchhHHHHhCC--CcCCCCCCeEEEecCHHHHHHHHHHHhcC
Confidence 4567885 899998865543 3 344333221 11123678999999999999999999864
No 8
>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=23.65 E-value=10 Score=25.08 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=18.1
Q ss_pred ccCCcHHHHHHHHHHHHhc
Q 029186 93 EFANHPLFKILLEDAESEY 111 (197)
Q Consensus 93 ~yLnhPlF~eLLe~AeEEf 111 (197)
.||+.-.|++++.++.+||
T Consensus 31 ~yLsd~dF~~vFgms~~eF 49 (67)
T d1yu5x1 31 NHLSDEDFKAVFGMTRSAF 49 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 7999999999999999997
No 9
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}
Probab=22.07 E-value=9 Score=26.26 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=41.9
Q ss_pred eEEEEecCCCeeEEEEeccCCc-H--HHHHHHHHHHHhcCcC-CCCCeEecCcHHHHHHHHHHHhcCC
Q 029186 76 CFSVYVGPQRQRFVIKTEFANH-P--LFKILLEDAESEYGYE-NQGPIMLPCDVDLFFKVLAELESTG 139 (197)
Q Consensus 76 ~~aVYVG~e~rRFvVpv~yLnh-P--lF~eLLe~AeEEfGf~-~~G~L~IPCdv~~Fe~vL~~i~s~~ 139 (197)
.+.+=||. ++|.+..+-|.. | .|..++ +....+. .+|.+-|--+...|++||.-+..+.
T Consensus 3 rI~LNVGG--~~F~t~~~tL~~~~~s~l~~~~---~~~~~~~~~~~~~fiDRdp~~F~~IL~ylR~g~ 65 (103)
T d3kvta_ 3 RVIINVGG--IRHETYKATLKKIPATRLSRLT---EGMLNYDPVLNEYFFDRHPGVFAQIINYYRSGK 65 (103)
T ss_dssp EEEEEETT--EEEEEEHHHHTTSCSSTTTTCC---TTSTTEETTTTEEEECSCTTTHHHHHHHHHHSC
T ss_pred EEEEEECC--EEEEEeHHHHhhCccchhHHHH---cCCCccCCCCCcEEecCCHHHHHHHHHHHccCC
Confidence 45677885 899999877653 4 333222 2222333 5789999999999999999998763
No 10
>d1qusa_ d.2.1.6 (A:) 36 kDa soluble lytic transglycosylase, SLT35 {Escherichia coli [TaxId: 562]}
Probab=19.67 E-value=27 Score=28.87 Aligned_cols=24 Identities=21% Similarity=0.527 Sum_probs=21.7
Q ss_pred eccCCcHHHHHHHHHHHHhcCcCC
Q 029186 92 TEFANHPLFKILLEDAESEYGYEN 115 (197)
Q Consensus 92 v~yLnhPlF~eLLe~AeEEfGf~~ 115 (197)
-+|.+||.|++++++..+++||+.
T Consensus 13 ~dya~~p~v~~Fi~~la~~~G~s~ 36 (322)
T d1qusa_ 13 GDFANNPNAQQFIDKMVNKHGFDR 36 (322)
T ss_dssp STTTTCHHHHHHHHHHHHHHCCCH
T ss_pred CCcccCHHHHHHHHHHHHHhCCCH
Confidence 379999999999999999999974
Done!