Query 029187
Match_columns 197
No_of_seqs 98 out of 100
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 14:24:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qyh_A CO-type nitrIle hydrata 74.6 2.3 8E-05 36.6 3.6 44 144-187 47-96 (226)
2 3hht_A NitrIle hydratase alpha 66.9 4.9 0.00017 34.5 3.8 51 144-194 36-93 (216)
3 3a8g_A NitrIle hydratase subun 56.9 4.1 0.00014 34.7 1.6 45 144-188 30-80 (207)
4 4fm4_A NitrIle hydratase alpha 53.5 5.5 0.00019 34.0 1.8 43 145-187 21-69 (209)
5 1ugp_A NitrIle hydratase alpha 52.8 8.4 0.00029 32.8 2.8 47 144-190 27-79 (203)
6 2zzd_C Thiocyanate hydrolase s 48.0 11 0.00037 32.8 2.8 45 144-188 38-87 (243)
7 1uvq_C Orexin; immunology, MHC 33.3 17 0.00059 22.6 1.3 15 78-92 16-30 (33)
8 3mn2_A Probable ARAC family tr 20.8 2.1E+02 0.0071 19.5 7.1 50 123-173 4-53 (108)
9 2yle_A Protein spire homolog 1 19.1 67 0.0023 27.4 2.8 61 100-160 166-229 (229)
10 3n44_F E1 envelope glycoprotei 18.2 26 0.0009 32.8 0.1 21 93-113 4-24 (473)
No 1
>3qyh_A CO-type nitrIle hydratase alpha subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} PDB: 3qyg_A 3qxe_A 3qz9_A 3qz5_A
Probab=74.59 E-value=2.3 Score=36.64 Aligned_cols=44 Identities=9% Similarity=-0.004 Sum_probs=31.1
Q ss_pred HHHhcCcCHHHHHHHHh-hhcC--cc-hHHHHHHhh--hHHHHhhhcCch
Q 029187 144 AAKTVGIRKMFLLRYLD-LQGS--VW-PLGFLMRYC--FMLRDRMLADPS 187 (197)
Q Consensus 144 Aae~GgIrsa~L~Ryl~-L~as--p~-~l~~L~rs~--p~fR~RLLADP~ 187 (197)
.++.|.|.++.+.++++ ++.. |. =.+.+-|.| |.||.|||+||.
T Consensus 47 L~eKG~i~~~~~~~~~~~~e~~~gP~nGArVVAKAW~Dp~FK~rLL~D~~ 96 (226)
T 3qyh_A 47 LIEKGLVDPAAMDLVVQTYEHKVGPRNGAKVVAKAWVDPAYKARLLADGT 96 (226)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCcchhhhhhhhhCCHHHHHHHHHCHH
Confidence 46789999999999988 4433 31 123344444 599999999997
No 2
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: d.149.1.1 PDB: 2dpp_A 1v29_A
Probab=66.92 E-value=4.9 Score=34.47 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=34.1
Q ss_pred HHHhcCcCHHHHHHHHhh-hcC--cch-HHHHHHhh--hHHHHhhhcCch-hhhhhhh
Q 029187 144 AAKTVGIRKMFLLRYLDL-QGS--VWP-LGFLMRYC--FMLRDRMLADPS-FLFKVGT 194 (197)
Q Consensus 144 Aae~GgIrsa~L~Ryl~L-~as--p~~-l~~L~rs~--p~fR~RLLADP~-FL~Kl~~ 194 (197)
-++.|.|+++.+.++.+. +.. |.. .+.+-|.| |.||.|||+||. =+..+++
T Consensus 36 l~ekg~i~~~~~~~~~~~~e~~~gP~~GArVVAKAW~Dp~FK~rLL~Dp~aAi~elG~ 93 (216)
T 3hht_A 36 LIEKGHLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPAFKQRLLEDSETVLRELGY 93 (216)
T ss_dssp HHHTTSCCHHHHHHHHHHHHTTCCTHHHHHHHHHHHHCHHHHHHHHHCHHHHHHHHTC
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcCHHHHHHHHHCHHHHHHHcCC
Confidence 367899999999999986 333 321 23344444 499999999997 3333443
No 3
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=56.95 E-value=4.1 Score=34.70 Aligned_cols=45 Identities=9% Similarity=0.014 Sum_probs=29.2
Q ss_pred HHHhcCcCHHHHHHHHhh-hcC--cc-hHHHHHHhh--hHHHHhhhcCchh
Q 029187 144 AAKTVGIRKMFLLRYLDL-QGS--VW-PLGFLMRYC--FMLRDRMLADPSF 188 (197)
Q Consensus 144 Aae~GgIrsa~L~Ryl~L-~as--p~-~l~~L~rs~--p~fR~RLLADP~F 188 (197)
.++.|.|+...+.++.+. +.. |. =.+.+-|+| |.||.|||+|+.=
T Consensus 30 l~ekG~i~~~~~~~~~~~~e~~~~P~~GA~vVArAW~DP~Fk~rLL~D~~a 80 (207)
T 3a8g_A 30 LDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGTA 80 (207)
T ss_dssp HHTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHHH
T ss_pred HHHcCCCCHHHHHHHHHHHhcccCCccccEEeeehhCCHHHHHHHHHCHHH
Confidence 356788888888887775 333 21 012334444 5999999999973
No 4
>4fm4_A NitrIle hydratase alpha subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=53.48 E-value=5.5 Score=34.02 Aligned_cols=43 Identities=9% Similarity=0.071 Sum_probs=29.4
Q ss_pred HHhcCcCHHHHHHHHh-hhcC--cc-hHHHHHHhh--hHHHHhhhcCch
Q 029187 145 AKTVGIRKMFLLRYLD-LQGS--VW-PLGFLMRYC--FMLRDRMLADPS 187 (197)
Q Consensus 145 ae~GgIrsa~L~Ryl~-L~as--p~-~l~~L~rs~--p~fR~RLLADP~ 187 (197)
++.|.|....+..|.+ ++.. |. =.+.+-|.| |.||+|||+|+.
T Consensus 21 ~eKGli~~~~id~~~~~~~~~~gP~~GA~vVArAW~Dp~Fk~~Ll~D~~ 69 (209)
T 4fm4_A 21 KELGLVTDQTVPDYEDALMHDWLPQNGAKLVAKAWTDPVFKAQLLSEGV 69 (209)
T ss_dssp HHTTSCCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCccchhHHHHHhCCHHHHHHHHHHHH
Confidence 4679999999998888 3422 21 023344444 599999999986
No 5
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=52.77 E-value=8.4 Score=32.76 Aligned_cols=47 Identities=11% Similarity=0.068 Sum_probs=31.9
Q ss_pred HHHhcCcCHHHHHHHHhhh-cC--cc-hHHHHHHhh--hHHHHhhhcCchhhh
Q 029187 144 AAKTVGIRKMFLLRYLDLQ-GS--VW-PLGFLMRYC--FMLRDRMLADPSFLF 190 (197)
Q Consensus 144 Aae~GgIrsa~L~Ryl~L~-as--p~-~l~~L~rs~--p~fR~RLLADP~FL~ 190 (197)
.++.|.|+...+.++.+.- .. |. =.+.+-|.| |.||.|||+|+.=..
T Consensus 27 L~eKGli~~~~id~~~~~~e~~~gP~nGA~vVArAW~Dp~fk~~Ll~d~~aA~ 79 (203)
T 1ugp_A 27 LIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFKKRLLADGTEAC 79 (203)
T ss_dssp HHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHhcccCCcccCeeeehhhCCHHHHHHHHhChHHHH
Confidence 4678999999999988853 33 21 012333444 599999999997543
No 6
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=48.03 E-value=11 Score=32.84 Aligned_cols=45 Identities=7% Similarity=-0.138 Sum_probs=30.2
Q ss_pred HHHhcCcCHHHHHHHHhhh-c-Ccc-hHHHHHHhh--hHHHHhhhcCchh
Q 029187 144 AAKTVGIRKMFLLRYLDLQ-G-SVW-PLGFLMRYC--FMLRDRMLADPSF 188 (197)
Q Consensus 144 Aae~GgIrsa~L~Ryl~L~-a-sp~-~l~~L~rs~--p~fR~RLLADP~F 188 (197)
.++.|.|+.+.+.++.+.- . .|. =.+.+-|.| |.||.|||+|..=
T Consensus 38 L~eKGli~~~~~~~~~~~~e~~gP~~GArvVArAW~DP~fk~~Ll~d~~a 87 (243)
T 2zzd_C 38 AIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGVE 87 (243)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHCHHHHHHHHHCHHH
T ss_pred HHHcCCCCHHHHHHHHHHHhccCCCCcceEEEeecCCHHHHHHHHHChHH
Confidence 4678888988888888752 2 221 123334444 5999999999864
No 7
>1uvq_C Orexin; immunology, MHC class II, diabetes, narcolepsy, autoimmune disease, structural proteomics in europe, spine, structural genomics; HET: NAG FUC BMA; 1.8A {Homo sapiens}
Probab=33.31 E-value=17 Score=22.58 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=7.2
Q ss_pred cCCCCCCCCCCCCCC
Q 029187 78 HSSGGDGGAGDSPGG 92 (197)
Q Consensus 78 ~~~~G~G~~G~~~~g 92 (197)
|...|+|+--.+++|
T Consensus 16 AaVtgggslvprgsg 30 (33)
T 1uvq_C 16 AAVGGGGSLVPRGSG 30 (33)
T ss_pred EEecCCceeeeccCC
Confidence 444455554444443
No 8
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=20.84 E-value=2.1e+02 Score=19.52 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHhcCcCHHHHHHHHhhhcCcchHHHHHH
Q 029187 123 FEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMR 173 (197)
Q Consensus 123 ~eeVLaEa~Rrg~SLPaDL~eAae~GgIrsa~L~Ryl~L~asp~~l~~L~r 173 (197)
+++|++........ |-.+.+.++.-++++..|.|.|.-...-.+..|+.+
T Consensus 4 i~~~~~~i~~~~~~-~~~~~~lA~~~~~s~~~l~r~fk~~~G~s~~~~~~~ 53 (108)
T 3mn2_A 4 VRQVEEYIEANWMR-PITIEKLTALTGISSRGIFKAFQRSRGYSPMAFAKR 53 (108)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHTCCHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHHcccC-CCCHHHHHHHHCCCHHHHHHHHHHHhCcCHHHHHHH
Confidence 34566666665433 345667777778999999999998766655666654
No 9
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=19.05 E-value=67 Score=27.37 Aligned_cols=61 Identities=18% Similarity=0.282 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCccccccCcccHHHHHHHHHHhCCCC---cHHHHHHHHhcCcCHHHHHHHHh
Q 029187 100 SGGGGGDGEGNDGEEKEFGPILKFEEVMKEIELKGVGL---PDDMMEAAKTVGIRKMFLLRYLD 160 (197)
Q Consensus 100 gGgg~g~g~~dd~~e~efG~il~~eeVLaEa~Rrg~SL---PaDL~eAae~GgIrsa~L~Ryl~ 160 (197)
|=..++.|++|++++..+..+.++++||+.+..+..+. |.=-++..++=-.-..-|..||+
T Consensus 166 G~~~~~eg~~d~~~~~~~~~~~sl~~Vi~~C~~hl~~ps~A~~HY~aVCraL~~Et~EL~~fl~ 229 (229)
T 2yle_A 166 GYEAAEEGLGDEDEKRKISAIRSYRDVMKLCAAHLPTESDAPNHYQAVCRALFAETMELHTFLT 229 (229)
T ss_dssp -------------CCSCCCCCCSHHHHHHHHHTTSSSGGGHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cccccccccccccccccccCcCCHHHHHHHHHhhccCcccchHHHHHHHHHHHHHHHHHHHhhC
No 10
>3n44_F E1 envelope glycoprotein; viral protein, immature heterodimer, alphavirus, receptor BI membrane fusion; HET: NAG; 2.35A {Chikungunya virus} PDB: 3n41_F* 3n42_F* 3n43_F* 2xfc_A
Probab=18.17 E-value=26 Score=32.83 Aligned_cols=21 Identities=52% Similarity=1.064 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCc
Q 029187 93 GGGGGGDSGGGGGDGEGNDGE 113 (197)
Q Consensus 93 ggg~~gggGgg~g~g~~dd~~ 113 (197)
|||+.||||.|||+..-+-||
T Consensus 4 ~~~~~~~~~~~~~~~~~~AYE 24 (473)
T 3n44_F 4 GGGGSGGGGSGGGGSGGGGYE 24 (473)
T ss_dssp -------------------CE
T ss_pred cCCCCCCCCCCCCCCccceee
Done!