BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029189
(197 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P6K1|SFT2_SCHPO Protein transport protein sft2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=sft2 PE=3 SV=1
Length = 201
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 8/131 (6%)
Query: 74 SKGVRDLPGN-------LQSATSTVPSGKALMYFGLFLASGVFFIFIAFTMFLPVMVLMP 126
S ++P N QS+ ++ + M FG+ L + IA MF PV+VL P
Sbjct: 38 SNDYTEIPTNASGGNSYFQSSEFSLSRWERYMLFGICLLGSLACYAIACFMF-PVLVLKP 96
Query: 127 QKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGTIYVSMVLHSY 186
+KF L +T+G + F ++G +++ ERLP TL + ++ TI ++ + S
Sbjct: 97 RKFVLLWTMGSLLAVLGFAIVQGFVAHFRQLTTMERLPITLSYFVTLLATIIATIKIKST 156
Query: 187 ILSVLFSVIQV 197
ILS++F V+ +
Sbjct: 157 ILSIVFGVLHI 167
>sp|P38166|SFT2_YEAST Protein transport protein SFT2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SFT2 PE=1 SV=1
Length = 215
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 84/185 (45%), Gaps = 14/185 (7%)
Query: 20 QKTTSSSSSSLLADWNSYAATRDADDGSGLAFGFDIESA-------VRSANDTVSGTFNV 72
++ S +SL N + TR + GF+ ESA S N +
Sbjct: 3 EEPPSDQVNSLRDSLNRWNQTRQQNSQ-----GFN-ESAKTLFSSWADSLNTRAQDIYQT 56
Query: 73 VSKGVRDLPGNLQSATSTVPSGKALMYFGLFLASGVFFIFIAFTMFLPVMVLMPQKFALC 132
+ +DL + + + + + ++ F FL G F T PV+ P+KF L
Sbjct: 57 LPVSRQDLVQDQEPSWFQLSRTERMVLFVCFLL-GATACFTLCTFLFPVLAAKPRKFGLL 115
Query: 133 FTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGTIYVSMVLHSYILSVLF 192
+T+G + +F L GP L H++++ERLPF++ F + TIY + + +L++
Sbjct: 116 WTMGSLLFVLAFGVLMGPLAYLKHLTARERLPFSMFFFATCFMTIYFAAFSKNTVLTITC 175
Query: 193 SVIQV 197
+++++
Sbjct: 176 ALLEL 180
>sp|Q9CSV6|SFT2C_MOUSE Vesicle transport protein SFT2C OS=Mus musculus GN=Sft2d3 PE=2 SV=2
Length = 209
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 116 TMFLPVMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPF--TLGFIGSM 173
++ PV++L +KFAL +++G S LRG + E P TLG+ ++
Sbjct: 89 ALYAPVLLLRARKFALLWSLGSVLAWASAALLRG-GPACGRLLRGEETPSRSTLGYAAAL 147
Query: 174 AGTIYVSMVLHSYILSVLFSVIQV 197
T+Y ++VL S +L+ L + QV
Sbjct: 148 GATLYAALVLRSTVLTALGACAQV 171
>sp|Q21WG7|GLGB_RHOFD 1,4-alpha-glucan branching enzyme GlgB OS=Rhodoferax
ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)
GN=glgB PE=3 SV=1
Length = 625
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 11 QSSGTEDQLQKTTSSSSSSLLADWNSYAATRD----ADDGSGLAFGFDIESAVR 60
QS+G + ++ S S++ DWN ++ D DDGSG+ GF +E+AVR
Sbjct: 27 QSNGGANFAVWAPNAESVSVVGDWNYWSGNVDRLDLRDDGSGIWQGF-VENAVR 79
>sp|O95562|SFT2B_HUMAN Vesicle transport protein SFT2B OS=Homo sapiens GN=SFT2D2 PE=1 SV=1
Length = 160
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 121 VMVLMPQK----FALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGT 176
V++ +P+K FA+ +T G IGS L GP QL M RL T+ + A T
Sbjct: 53 VLLWVPRKGLHLFAVFYTFGNIASIGSTIFLMGPVKQLKRMFEPTRLIATIMVLLCFALT 112
Query: 177 IYVSMVLHSYILSVLFSVIQ 196
+ + H+ L+++F ++Q
Sbjct: 113 LCSAFWWHNKGLALIFCILQ 132
>sp|A2QWA2|VPS27_ASPNC Vacuolar protein sorting-associated protein 27 OS=Aspergillus
niger (strain CBS 513.88 / FGSC A1513) GN=vps27 PE=3
SV=1
Length = 703
Score = 32.0 bits (71), Expect = 2.5, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 7 GWFSQSSGTEDQLQKTTSSS 26
GWFS +S EDQ++K T+SS
Sbjct: 3 GWFSSTSTIEDQVEKATASS 22
>sp|Q8WV19|SFT2A_HUMAN Vesicle transport protein SFT2A OS=Homo sapiens GN=SFT2D1 PE=1 SV=1
Length = 159
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 97 LMYFGLFLASGVFF-IFIAFTMFLPVMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQLA 155
L +F + GVFF I ++LP + + FA+ +T+G + S L GP QL
Sbjct: 34 LKWFAICFVCGVFFSILGTGLLWLPGGI---KLFAVFYTLGNLAALASTCFLMGPVKQLK 90
Query: 156 HMSSKERLPFTLGFIGSMAGTIYVSMVLHSYILSVLFSVIQ 196
M RL T+ + T+ ++ H L+VLF ++Q
Sbjct: 91 KMFEATRLLATIVMLLCFIFTLCAALWWHKKGLAVLFCILQ 131
>sp|Q8CUT6|MSCL_OCEIH Large-conductance mechanosensitive channel OS=Oceanobacillus
iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 /
HTE831) GN=mscL PE=3 SV=1
Length = 130
Score = 30.8 bits (68), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 71 NVVSKGVRDLPGNLQSATSTVPSGKALMYFGLFLASGVFFIFIAFTMFLPVMVLMPQK 128
N+++ + + G + T V G+A + +G F+ S V FI IAF++FL + L+ K
Sbjct: 37 NIITPLMGVIVGGVDFTTLKVTVGEAEILYGNFIQSFVDFIIIAFSIFLAIKFLVKFK 94
>sp|F1N5C8|ENPP6_BOVIN Ectonucleotide pyrophosphatase/phosphodiesterase family member 6
OS=Bos taurus GN=ENPP6 PE=1 SV=2
Length = 445
Score = 30.8 bits (68), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 12/86 (13%)
Query: 6 QGWFSQSSGTEDQ------LQKTTSSSSSSLLADWNSYAATRDADDGSGLAFGFDIESAV 59
+GWF TE++ + T + W+ Y A G LAFG D +S
Sbjct: 325 EGWFI----TENRESLPFWMNSTVTRKPEGWQWGWHGYDNELRAMRGIFLAFGPDFKSDF 380
Query: 60 RSANDTVSGTFNVVSK--GVRDLPGN 83
R+A V +N++ K GV LP N
Sbjct: 381 RAAPIRVVDIYNLMCKVTGVTPLPNN 406
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,357,351
Number of Sequences: 539616
Number of extensions: 2361392
Number of successful extensions: 9530
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 9478
Number of HSP's gapped (non-prelim): 63
length of query: 197
length of database: 191,569,459
effective HSP length: 111
effective length of query: 86
effective length of database: 131,672,083
effective search space: 11323799138
effective search space used: 11323799138
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)