Query 029189
Match_columns 197
No_of_seqs 137 out of 364
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 08:55:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029189.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029189hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2887 Membrane protein invol 100.0 6.2E-39 1.3E-43 266.4 12.2 143 54-197 2-145 (175)
2 PF04178 Got1: Got1/Sft2-like 99.9 5.2E-26 1.1E-30 178.1 9.5 91 107-197 3-94 (118)
3 COG5102 SFT2 Membrane protein 99.9 7.4E-25 1.6E-29 182.7 10.7 119 78-197 49-167 (201)
4 KOG1743 Ferric reductase-like 93.8 0.2 4.3E-06 40.9 6.0 81 103-192 13-97 (137)
5 COG5120 GOT1 Membrane protein 90.1 0.47 1E-05 38.1 4.1 65 105-178 15-79 (129)
6 TIGR02908 CoxD_Bacillus cytoch 65.3 14 0.00031 29.2 4.7 47 151-197 14-68 (110)
7 COG2917 Intracellular septatio 58.9 48 0.001 28.4 7.1 67 128-196 77-165 (180)
8 PF10754 DUF2569: Protein of u 53.0 95 0.0021 24.9 7.7 23 94-116 4-26 (149)
9 PF05977 MFS_3: Transmembrane 50.2 2E+02 0.0044 27.7 10.7 60 118-182 240-304 (524)
10 PF04156 IncA: IncA protein; 47.1 1.2E+02 0.0027 24.6 7.7 22 93-115 2-23 (191)
11 PF13347 MFS_2: MFS/sugar tran 45.5 2.3E+02 0.0049 25.4 11.4 68 119-191 252-320 (428)
12 PF10031 DUF2273: Small integr 39.2 67 0.0015 21.9 4.1 39 157-195 3-41 (51)
13 PF04235 DUF418: Protein of un 37.5 2.1E+02 0.0045 22.6 11.6 31 159-192 79-109 (163)
14 PF14143 YrhC: YrhC-like prote 36.8 1.2E+02 0.0026 22.3 5.4 56 102-160 16-71 (72)
15 PF09323 DUF1980: Domain of un 36.0 2.3E+02 0.0049 23.3 7.6 50 99-149 3-52 (182)
16 PF03825 Nuc_H_symport: Nucleo 34.9 3.7E+02 0.008 24.8 9.9 76 93-173 5-80 (400)
17 PRK10582 cytochrome o ubiquino 33.7 78 0.0017 24.9 4.2 37 161-197 14-58 (109)
18 TIGR00997 ispZ intracellular s 33.1 3E+02 0.0065 23.3 9.4 68 128-197 77-166 (178)
19 COG4652 Uncharacterized protei 33.1 4.4E+02 0.0094 27.0 10.2 39 151-190 267-305 (657)
20 PF05915 DUF872: Eukaryotic pr 32.0 1.2E+02 0.0025 24.0 5.0 25 93-118 41-65 (115)
21 PF12221 HflK_N: Bacterial mem 31.7 19 0.00041 23.8 0.4 19 52-70 20-38 (42)
22 TIGR02847 CyoD cytochrome o ub 31.5 93 0.002 23.9 4.2 36 162-197 4-47 (96)
23 COG5547 Small integral membran 30.7 99 0.0021 22.2 3.9 36 160-195 6-41 (62)
24 KOG3393 Predicted membrane pro 30.6 2.2E+02 0.0048 24.0 6.6 62 86-148 82-147 (157)
25 PF14851 FAM176: FAM176 family 30.3 95 0.002 25.9 4.4 34 121-154 14-47 (153)
26 PF11023 DUF2614: Protein of u 30.1 1.8E+02 0.0039 23.3 5.7 22 160-181 34-55 (114)
27 COG5438 Predicted multitransme 29.8 3.7E+02 0.008 25.8 8.6 53 117-180 167-219 (385)
28 PF06210 DUF1003: Protein of u 28.7 1.9E+02 0.0041 22.5 5.6 34 123-156 29-63 (108)
29 PF03839 Sec62: Translocation 28.2 1.6E+02 0.0035 25.9 5.7 15 90-104 106-120 (224)
30 TIGR02901 QoxD cytochrome aa3 26.5 1.1E+02 0.0024 23.3 3.9 33 165-197 9-49 (94)
31 PF07787 DUF1625: Protein of u 25.8 1.4E+02 0.0029 25.9 4.8 62 85-146 176-241 (248)
32 COG3125 CyoD Heme/copper-type 25.8 1.1E+02 0.0024 24.3 3.9 35 163-197 18-60 (111)
33 PF06341 DUF1056: Protein of u 25.5 2.6E+02 0.0057 20.2 5.8 35 101-143 16-50 (63)
34 PF14145 YrhK: YrhK-like prote 25.4 2E+02 0.0043 20.0 4.7 21 134-154 33-54 (59)
35 PF05255 UPF0220: Uncharacteri 25.4 2.3E+02 0.005 23.7 5.9 59 89-148 93-156 (166)
36 KOG2927 Membrane component of 25.3 97 0.0021 29.4 4.0 24 120-143 208-231 (372)
37 PRK11660 putative transporter; 25.1 6.4E+02 0.014 24.5 10.2 77 94-182 351-427 (568)
38 PRK06814 acylglycerophosphoeth 25.0 5.2E+02 0.011 26.5 9.4 32 133-164 54-85 (1140)
39 KOG1688 Golgi proteins involve 24.5 2E+02 0.0044 24.8 5.4 60 91-166 114-176 (188)
40 PF07664 FeoB_C: Ferrous iron 24.0 91 0.002 20.9 2.7 22 166-187 3-24 (54)
41 PF05462 Dicty_CAR: Slime mold 23.6 3.5E+02 0.0077 24.4 7.2 77 105-182 21-105 (303)
42 TIGR00869 sec62 protein transl 23.1 2.8E+02 0.006 24.7 6.2 46 90-142 114-159 (232)
43 PRK11588 hypothetical protein; 22.4 7.6E+02 0.017 24.4 9.9 66 125-196 338-408 (506)
44 PF04034 DUF367: Domain of unk 22.1 53 0.0011 26.7 1.4 49 118-166 48-97 (127)
45 PF11990 DUF3487: Protein of u 22.0 4.1E+02 0.0088 21.1 8.0 57 90-154 20-76 (121)
46 PRK10459 colanic acid exporter 21.3 6.3E+02 0.014 23.0 10.7 53 124-176 36-88 (492)
47 PF09925 DUF2157: Predicted me 21.0 4.2E+02 0.009 20.8 8.8 22 125-146 61-82 (145)
48 PF13131 DUF3951: Protein of u 21.0 99 0.0022 21.6 2.4 23 131-153 2-24 (53)
No 1
>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.2e-39 Score=266.37 Aligned_cols=143 Identities=43% Similarity=0.658 Sum_probs=130.9
Q ss_pred cHHHHhhhhccccccccceec-cccccCCccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 029189 54 DIESAVRSANDTVSGTFNVVS-KGVRDLPGNLQSATSTVPSGKALMYFGLFLASGVFFIFIAFTMFLPVMVLMPQKFALC 132 (197)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~s-~g~~~~~~~~qs~~~~Ls~~qRi~gF~~c~~~G~~f~~ls~~lfLPl~~~~P~kFAll 132 (197)
|...+.+++||.+++.-.... +..++.|++.|++.++||++||+++|++|++.|++|+++++++| |+.+..|+|||++
T Consensus 2 d~l~~~~~~~~~~sg~d~~~~~~~~~~~~~~~~~~~fsLs~~qR~~~F~~cl~~gv~c~~l~~~lf-~v~~~~~~kFal~ 80 (175)
T KOG2887|consen 2 DKLRSARSANDVLSGQDPGDHQTEERSFTSDLQESTFSLSRTQRIMGFGICLAGGVLCFLLAMVLF-PVLVVSPRKFALL 80 (175)
T ss_pred chhhhhHhhhhcccCCCCCccccccccchhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcccccceeehh
Confidence 555667777888877765442 67788888899999999999999999999999999999999864 8888899999999
Q ss_pred HhhhHHHHHHHHHHhccHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhcC
Q 029189 133 FTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGTIYVSMVLHSYILSVLFSVIQV 197 (197)
Q Consensus 133 fTlGsIl~l~St~FL~GP~~Qlk~M~s~~Rl~aTi~Yi~SlvlTLy~al~~ks~iLtllf~iiQv 197 (197)
||+||+++++||+||+||++|+|||++|+|+++|+.|++++++|||+|+++||++|+++|+|+|+
T Consensus 81 ~TlGnll~i~sf~fLmGP~~ql~~m~~p~Rl~~T~~~l~~~~~Tly~al~~ks~iLtllf~ilq~ 145 (175)
T KOG2887|consen 81 YTLGNLLAIGSFAFLMGPVSQLKHMFSPERLPATLSYLATMVLTLYVALWLKSKILTLLFCILQV 145 (175)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999995
No 2
>PF04178 Got1: Got1/Sft2-like family ; InterPro: IPR007305 Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae. Got1 is thought to facilitate Sed5-dependent fusion events []. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein (P38166 from SWISSPROT) []. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments []. ; GO: 0016192 vesicle-mediated transport
Probab=99.93 E-value=5.2e-26 Score=178.13 Aligned_cols=91 Identities=37% Similarity=0.651 Sum_probs=83.0
Q ss_pred HHHHHHHH-HHHHHHHHhhcchhHHHHHhhhHHHHHHHHHHhccHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhhh
Q 029189 107 GVFFIFIA-FTMFLPVMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGTIYVSMVLHS 185 (197)
Q Consensus 107 G~~f~~ls-~~lfLPl~~~~P~kFAllfTlGsIl~l~St~FL~GP~~Qlk~M~s~~Rl~aTi~Yi~SlvlTLy~al~~ks 185 (197)
|++|++++ ++.++|++..+|+|||++||+||+++++|++||+||++|+|+|++++|+++|++|++++++|+|+++++|+
T Consensus 3 G~~~~~l~~~~~~~~~~~~~~~kFa~l~tlGnil~l~s~~fL~Gp~~q~k~m~~~~R~~~t~~y~~~l~~tl~~~~~~~~ 82 (118)
T PF04178_consen 3 GIICFFLSLIFFFLGVLLFFPRKFAILYTLGNILFLASTFFLIGPKKQFKFMFSPKRLIATIIYFISLILTLYFAFILKS 82 (118)
T ss_pred ehHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555 22457888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhcC
Q 029189 186 YILSVLFSVIQV 197 (197)
Q Consensus 186 ~iLtllf~iiQv 197 (197)
++++++++++|+
T Consensus 83 ~~l~llf~~~q~ 94 (118)
T PF04178_consen 83 YGLTLLFSIFQF 94 (118)
T ss_pred HHHHHHHHHHHH
Confidence 999999999994
No 3
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=99.92 E-value=7.4e-25 Score=182.68 Aligned_cols=119 Identities=30% Similarity=0.401 Sum_probs=107.8
Q ss_pred ccCCccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhHHHHHHHHHHhccHHHHHHhh
Q 029189 78 RDLPGNLQSATSTVPSGKALMYFGLFLASGVFFIFIAFTMFLPVMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHM 157 (197)
Q Consensus 78 ~~~~~~~qs~~~~Ls~~qRi~gF~~c~~~G~~f~~ls~~lfLPl~~~~P~kFAllfTlGsIl~l~St~FL~GP~~Qlk~M 157 (197)
.|+.+++|+..++||+.||.+.|.+|+..+..|+.++.++ .|++.++|+||.++||+||++++.++++|.||.+|+||+
T Consensus 49 ~dl~~~~q~s~F~Lsr~eR~vlF~~ClLGa~ac~a~~~fm-fpVl~lkPrkFiLlwTmgslLfvl~Fg~l~Gf~ayl~~L 127 (201)
T COG5102 49 YDLEHYFQSSEFGLSRFERAVLFSACLLGAGACSAFLYFM-FPVLRLKPRKFILLWTMGSLLFVLMFGFLLGFRAYLEGL 127 (201)
T ss_pred cccccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHhcCccceeeehhHHHHHHHHHHHHHHhHHHHHHhh
Confidence 4566678988899999999999999954444555555555 499999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhcC
Q 029189 158 SSKERLPFTLGFIGSMAGTIYVSMVLHSYILSVLFSVIQV 197 (197)
Q Consensus 158 ~s~~Rl~aTi~Yi~SlvlTLy~al~~ks~iLtllf~iiQv 197 (197)
+++||+|.+..|+++.++|+|+++..|+++|++.|+++|+
T Consensus 128 ts~erlp~s~~ff~t~l~Tiy~~~k~k~t~L~i~f~~l~v 167 (201)
T COG5102 128 TSKERLPHSSWFFGTTLLTIYVVLKYKRTLLNIAFCFLQV 167 (201)
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999985
No 4
>KOG1743 consensus Ferric reductase-like proteins [Inorganic ion transport and metabolism]
Probab=93.77 E-value=0.2 Score=40.92 Aligned_cols=81 Identities=21% Similarity=0.445 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhHHHHHHHHHHhccHHHHHHhhcCCCchHHHHHHHHHHHHHHH----
Q 029189 103 FLASGVFFIFIAFTMFLPVMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGTIY---- 178 (197)
Q Consensus 103 c~~~G~~f~~ls~~lfLPl~~~~P~kFAllfTlGsIl~l~St~FL~GP~~Qlk~M~s~~Rl~aTi~Yi~SlvlTLy---- 178 (197)
..+.|+++++++.+++.. -.+-.+||++++.+..++.|.++-+.-.++++|+--|+.|....+.+++
T Consensus 13 ~TgfG~ff~l~Gii~ffD---------~aLLa~GNlLfi~GvsliiG~~~t~~FF~r~~k~kGti~F~~G~l~vl~~wPi 83 (137)
T KOG1743|consen 13 LTGFGVFFFLFGIILFFD---------KALLAMGNLLFIIGVSLIIGFRKTMQFFFRRQKMKGTISFLGGVLLVLFGWPI 83 (137)
T ss_pred EechhHHHHHHHHHHHHh---------hHHHHhcchHHHHhHHHhhcchhhhhhheehhhcceeeehhhhHHHHHHhhHH
Confidence 346788888888765422 1355679999999999999999999999999999999999999888874
Q ss_pred HHHHhhhhHHHHhh
Q 029189 179 VSMVLHSYILSVLF 192 (197)
Q Consensus 179 ~al~~ks~iLtllf 192 (197)
..+.+..|-+-++|
T Consensus 84 ~Gm~lE~~Gff~LF 97 (137)
T KOG1743|consen 84 FGMILETYGFFVLF 97 (137)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555544
No 5
>COG5120 GOT1 Membrane protein involved in Golgi transport [Intracellular trafficking and secretion]
Probab=90.08 E-value=0.47 Score=38.11 Aligned_cols=65 Identities=15% Similarity=0.334 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhHHHHHHHHHHhccHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 029189 105 ASGVFFIFIAFTMFLPVMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGTIY 178 (197)
Q Consensus 105 ~~G~~f~~ls~~lfLPl~~~~P~kFAllfTlGsIl~l~St~FL~GP~~Qlk~M~s~~Rl~aTi~Yi~SlvlTLy 178 (197)
.+|.++++++.++|.. + -+-.+||++.+.+.+.+.|.++-.--...|+|+--++.|.....+++|
T Consensus 15 ~~Gflffl~Gif~ffD----r-----aLl~lGNlL~iiG~fliags~ks~~fflRp~k~~Gsv~F~~G~ll~l~ 79 (129)
T COG5120 15 SIGFLFFLVGIFLFFD----R-----ALLILGNLLMIIGIFLIAGSRKSMFFFLRPEKIQGSVIFAMGVLLLLY 79 (129)
T ss_pred ehhHHHHHHHHHHHhh----h-----HHHHhcCHHHHHHHHHHhcccceEEEEEchhHhhhhHHHHHHHHHHHH
Confidence 4566666666554321 1 245789999999999999999888888899999999999999988886
No 6
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=65.29 E-value=14 Score=29.22 Aligned_cols=47 Identities=13% Similarity=0.047 Sum_probs=32.6
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhh--------hhHHHHhhhhhcC
Q 029189 151 KNQLAHMSSKERLPFTLGFIGSMAGTIYVSMVLH--------SYILSVLFSVIQV 197 (197)
Q Consensus 151 ~~Qlk~M~s~~Rl~aTi~Yi~SlvlTLy~al~~k--------s~iLtllf~iiQv 197 (197)
..|-|+--+++..-+.+.|+.|+++|++.=...- .++..++++++|+
T Consensus 14 ~~~~~~~~~~~~k~yviGFiLSiiLT~I~F~~V~~~~l~~~~~~~~I~~lAvvQi 68 (110)
T TIGR02908 14 LEFQKAKNAEEMKKQIVTFALMIFLTLIAFFAVMLDEIDKWFVIPFILLLAAVQV 68 (110)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Confidence 3455666677777899999999999986533221 2556667777774
No 7
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=58.86 E-value=48 Score=28.45 Aligned_cols=67 Identities=25% Similarity=0.371 Sum_probs=52.1
Q ss_pred hHHHHHhhhHHHHHHHHHHhccHHHHHHhhcCCC-ch----------HHHHHHHHHHHHHHHHHHHh-----------hh
Q 029189 128 KFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKE-RL----------PFTLGFIGSMAGTIYVSMVL-----------HS 185 (197)
Q Consensus 128 kFAllfTlGsIl~l~St~FL~GP~~Qlk~M~s~~-Rl----------~aTi~Yi~SlvlTLy~al~~-----------ks 185 (197)
|=.+.|.+..+..++|-.+.+-| -+|.|++++ |+ .-.+.|+.+.++-+|++..+ ..
T Consensus 77 K~TIi~~lFa~~Llgs~~~~~k~--lik~~lg~~l~Lp~~~W~~Ln~~W~~FFlf~ai~N~yV~~~fs~d~WV~FKvfG~ 154 (180)
T COG2917 77 KPTIIYWLFALVLLGSQFLFKKP--LIKRMLGKELQLPEEVWRKLNLRWALFFLFCAIANEYVARNFSTDTWVNFKVFGL 154 (180)
T ss_pred eHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeehhhh
Confidence 67789999999988876666654 588888776 22 24677888999999999864 46
Q ss_pred hHHHHhhhhhc
Q 029189 186 YILSVLFSVIQ 196 (197)
Q Consensus 186 ~iLtllf~iiQ 196 (197)
..++++|.++|
T Consensus 155 ~~ltlvf~l~q 165 (180)
T COG2917 155 TPLTLIFTLIQ 165 (180)
T ss_pred hHHHHHHHHHH
Confidence 78899999887
No 8
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=52.96 E-value=95 Score=24.91 Aligned_cols=23 Identities=9% Similarity=0.103 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029189 94 GKALMYFGLFLASGVFFIFIAFT 116 (197)
Q Consensus 94 ~qRi~gF~~c~~~G~~f~~ls~~ 116 (197)
.||+-|+++..++|+++..+...
T Consensus 4 ~~~IGGWL~lp~iglils~l~~~ 26 (149)
T PF10754_consen 4 PQGIGGWLILPAIGLILSPLSTS 26 (149)
T ss_pred CCCcchHHHHHHHHHHHHHHHHH
Confidence 57899999999999988766644
No 9
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=50.20 E-value=2e+02 Score=27.73 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=35.9
Q ss_pred HHHHHh-----hcchhHHHHHhhhHHHHHHHHHHhccHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHH
Q 029189 118 FLPVMV-----LMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGTIYVSMV 182 (197)
Q Consensus 118 fLPl~~-----~~P~kFAllfTlGsIl~l~St~FL~GP~~Qlk~M~s~~Rl~aTi~Yi~SlvlTLy~al~ 182 (197)
.+|++. ..+..|+++++...+=.+++...+. .+++-++++|++.....+. -+.++..++.
T Consensus 240 LlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~----~l~~~~~~~~lv~~~~~~~-a~~~~~lal~ 304 (524)
T PF05977_consen 240 LLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLP----RLRRRLSSRRLVLLASLLF-ALALLLLALS 304 (524)
T ss_pred hhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH----HhhcccCcchhhHHHHHHH-HHHHHHHhcc
Confidence 467765 4678888888877777777666532 3556667777765443332 2333444444
No 10
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=47.12 E-value=1.2e+02 Score=24.56 Aligned_cols=22 Identities=9% Similarity=0.283 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 029189 93 SGKALMYFGLFLASGVFFIFIAF 115 (197)
Q Consensus 93 ~~qRi~gF~~c~~~G~~f~~ls~ 115 (197)
+.+|++. ++++++|+++...+.
T Consensus 2 ~~~~i~~-i~~iilgilli~~gI 23 (191)
T PF04156_consen 2 KKQRIIS-IILIILGILLIASGI 23 (191)
T ss_pred hhHHHHH-HHHHHHHHHHHHHHH
Confidence 4455544 677788888655554
No 11
>PF13347 MFS_2: MFS/sugar transport protein
Probab=45.47 E-value=2.3e+02 Score=25.41 Aligned_cols=68 Identities=10% Similarity=0.061 Sum_probs=40.3
Q ss_pred HHHHhhcchhHHHHHhhhHHHHHHHHHHhccHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHh-hhhHHHHh
Q 029189 119 LPVMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGTIYVSMVL-HSYILSVL 191 (197)
Q Consensus 119 LPl~~~~P~kFAllfTlGsIl~l~St~FL~GP~~Qlk~M~s~~Rl~aTi~Yi~SlvlTLy~al~~-ks~iLtll 191 (197)
.--.+..+...+.+..+.++..+.+..+. ..+.+-+.++| ...+.++...+..+...+.. ++..+.++
T Consensus 252 ~~~vl~~~~~~~~~~~~~~~~~~v~~~~~----~~l~~r~gk~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 320 (428)
T PF13347_consen 252 FTYVLGNEGLISIFMLIFFVASIVGSPLW----GRLSKRFGKKK-VYIIGLLLAALGFLLLFFLGPGSPWLVLI 320 (428)
T ss_pred HHHHhcCchhhHHHHHHHHHHHHHHHHHH----HHHHHHcccee-ehhhhHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34445677777777777777777665555 23344445555 55666666666666666654 44444433
No 12
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=39.18 E-value=67 Score=21.89 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=28.7
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhh
Q 029189 157 MSSKERLPFTLGFIGSMAGTIYVSMVLHSYILSVLFSVI 195 (197)
Q Consensus 157 M~s~~Rl~aTi~Yi~SlvlTLy~al~~ks~iLtllf~ii 195 (197)
..++.|-...-+-++-+++.++..+.+-++++.++|.++
T Consensus 3 ~~~~~~~~iiG~~~G~ila~l~l~~GF~~tl~i~~~~~i 41 (51)
T PF10031_consen 3 FWKNHRGKIIGGLIGLILALLILTFGFWKTLFILLFAAI 41 (51)
T ss_pred HHHHCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556555666677778888888888888888888764
No 13
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=37.49 E-value=2.1e+02 Score=22.65 Aligned_cols=31 Identities=39% Similarity=0.508 Sum_probs=19.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHhh
Q 029189 159 SKERLPFTLGFIGSMAGTIYVSMVLHSYILSVLF 192 (197)
Q Consensus 159 s~~Rl~aTi~Yi~SlvlTLy~al~~ks~iLtllf 192 (197)
..+|+..-+..++-|-+|.|.+ |+.+.+++|
T Consensus 79 ~~~~~~~~l~~~GrmaLT~Yi~---qsii~~~lf 109 (163)
T PF04235_consen 79 PRQRLLRPLAAVGRMALTNYIL---QSIIGTLLF 109 (163)
T ss_pred CccHHHHHHHHHhhHHHHHHHH---HHHHHHHHH
Confidence 3355677777888888887765 444444443
No 14
>PF14143 YrhC: YrhC-like protein
Probab=36.76 E-value=1.2e+02 Score=22.28 Aligned_cols=56 Identities=18% Similarity=0.339 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhHHHHHHHHHHhccHHHHHHhhcCC
Q 029189 102 LFLASGVFFIFIAFTMFLPVMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSK 160 (197)
Q Consensus 102 ~c~~~G~~f~~ls~~lfLPl~~~~P~kFAllfTlGsIl~l~St~FL~GP~~Qlk~M~s~ 160 (197)
+.+++|.++.+... +|.-...+.+-.++...-.++..+++.|.+=-+.+-|++.+.
T Consensus 16 vLLAvs~FlYiG~v---iP~~~~~~~~~~~m~~~~~~~l~~a~~f~~rs~~~~~~L~E~ 71 (72)
T PF14143_consen 16 VLLAVSTFLYIGTV---IPIGAKETAQKYIMMGAICIFLAGAFLFFRRSKKYQKKLEEE 71 (72)
T ss_pred HHHHHHHHHHHHhh---CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45677777654442 586666777777777777777778888877666655555443
No 15
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=35.99 E-value=2.3e+02 Score=23.35 Aligned_cols=50 Identities=14% Similarity=0.336 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhHHHHHHHHHHhcc
Q 029189 99 YFGLFLASGVFFIFIAFTMFLPVMVLMPQKFALCFTVGCGFIIGSFFALRG 149 (197)
Q Consensus 99 gF~~c~~~G~~f~~ls~~lfLPl~~~~P~kFAllfTlGsIl~l~St~FL~G 149 (197)
-++++++.|++++-+-..==+ ...++|+-+.+++--+-++++.+..-+..
T Consensus 3 r~liL~~~~~l~~~l~~sG~i-~~YI~P~~~~~~~~a~i~l~ilai~q~~~ 52 (182)
T PF09323_consen 3 RFLILLGFGILLFYLILSGKI-LLYIHPRYIPLLYFAAILLLILAIVQLWR 52 (182)
T ss_pred HHHHHHHHHHHHHHHHHhCcH-HHHhCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666444332111 23369998888888888887777655544
No 16
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=34.93 E-value=3.7e+02 Score=24.80 Aligned_cols=76 Identities=22% Similarity=0.308 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhHHHHHHHHHHhccHHHHHHhhcCCCchHHHHHHHHH
Q 029189 93 SGKALMYFGLFLASGVFFIFIAFTMFLPVMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGS 172 (197)
Q Consensus 93 ~~qRi~gF~~c~~~G~~f~~ls~~lfLPl~~~~P~kFAllfTlGsIl~l~St~FL~GP~~Qlk~M~s~~Rl~aTi~Yi~S 172 (197)
.+=....|+-+++.|+..-+++.. |--.-..+.+-+++++++.+..+.+ -.+.|+. .+|...++|+...+..++.
T Consensus 5 ~rLs~~~f~~f~~~G~~~p~~~~~--L~~~G~s~~qIG~l~a~~~~~~i~~-~~~~g~~--aDr~~~~~~~l~~~~l~~~ 79 (400)
T PF03825_consen 5 FRLSLMYFLYFFAYGAFLPYLPLY--LESRGFSGTQIGILLAVGPLARIVS-PPFWGAI--ADRFGSAKRILALLSLLSA 79 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCCHHHHHHHHHHHHHHHHHH-HHHHHHH--HhHhhhHHHHHHHHHHHHH
Confidence 344456777788888887665542 3333367888899999999999887 4556664 3355566666554444443
Q ss_pred H
Q 029189 173 M 173 (197)
Q Consensus 173 l 173 (197)
+
T Consensus 80 ~ 80 (400)
T PF03825_consen 80 L 80 (400)
T ss_pred H
Confidence 3
No 17
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=33.66 E-value=78 Score=24.88 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=22.4
Q ss_pred CchHHHHHHHHHHHHHHHHHH-Hhh-------hhHHHHhhhhhcC
Q 029189 161 ERLPFTLGFIGSMAGTIYVSM-VLH-------SYILSVLFSVIQV 197 (197)
Q Consensus 161 ~Rl~aTi~Yi~SlvlTLy~al-~~k-------s~iLtllf~iiQv 197 (197)
++.-+-+.|+.|+++|++.-. +.. .+...++++++|+
T Consensus 14 s~k~yviGFiLSliLT~i~F~lv~~~~~~~~~~~~~i~~lA~vQi 58 (109)
T PRK10582 14 SVKTYMTGFILSIILTVIPFWMVMTGAASPAVILGTILAMAVVQI 58 (109)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHH
Confidence 445577889999999965422 221 2444456667764
No 18
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=33.14 E-value=3e+02 Score=23.27 Aligned_cols=68 Identities=21% Similarity=0.170 Sum_probs=47.1
Q ss_pred hHHHHHhhhHHHHHHHHHHhccHHHHHHhhcCCCc-----------hHHHHHHHHHHHHHHHHHHHh-----------hh
Q 029189 128 KFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKER-----------LPFTLGFIGSMAGTIYVSMVL-----------HS 185 (197)
Q Consensus 128 kFAllfTlGsIl~l~St~FL~GP~~Qlk~M~s~~R-----------l~aTi~Yi~SlvlTLy~al~~-----------ks 185 (197)
|=.+.|.+-.+..+.|..+-+ ++-+|+|++++= +.-.+.|+..-++..|++..+ ..
T Consensus 77 KpTIi~~lfa~~ll~s~~~~k--k~llk~~l~~~~~lp~~~W~~L~~~W~~fF~~~a~lN~~va~~~s~~~WV~FK~fG~ 154 (178)
T TIGR00997 77 KPTIIYGLFAVILLGSQLFGK--TPGIKYMLGKEFQLTEKGWLKLNFRWAGFFIFMAVLNEYVATNFSEEIWVNFKVFGV 154 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHcC--CcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 566777777777777766655 455888887541 123556777778888888754 45
Q ss_pred hHHHHhhhhhcC
Q 029189 186 YILSVLFSVIQV 197 (197)
Q Consensus 186 ~iLtllf~iiQv 197 (197)
.+++++|.++|.
T Consensus 155 ~~lt~vF~i~q~ 166 (178)
T TIGR00997 155 TILTFIFIIAQG 166 (178)
T ss_pred HHHHHHHHHHHH
Confidence 678888888873
No 19
>COG4652 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.05 E-value=4.4e+02 Score=27.01 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=18.1
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 029189 151 KNQLAHMSSKERLPFTLGFIGSMAGTIYVSMVLHSYILSV 190 (197)
Q Consensus 151 ~~Qlk~M~s~~Rl~aTi~Yi~SlvlTLy~al~~ks~iLtl 190 (197)
+.++-.+... |.++....+...++=+++.++.-+.+.++
T Consensus 267 ~~sL~~~IKg-K~~~K~~m~l~~v~k~v~~liv~s~l~~~ 305 (657)
T COG4652 267 RLSLANLIKG-KLPFKRSMFLLTVCKLVAVLIVVSSLAQN 305 (657)
T ss_pred HhhHHHHhcC-CCccchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555543 34444444444555444444444444333
No 20
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=32.01 E-value=1.2e+02 Score=23.97 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029189 93 SGKALMYFGLFLASGVFFIFIAFTMF 118 (197)
Q Consensus 93 ~~qRi~gF~~c~~~G~~f~~ls~~lf 118 (197)
||.=+.+ +.++++|.++.+++..++
T Consensus 41 wK~I~la-~~Lli~G~~li~~g~l~~ 65 (115)
T PF05915_consen 41 WKSIALA-VFLLIFGTVLIIIGLLLF 65 (115)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4443333 445677888878876543
No 21
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=31.67 E-value=19 Score=23.84 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=17.1
Q ss_pred cccHHHHhhhhcccccccc
Q 029189 52 GFDIESAVRSANDTVSGTF 70 (197)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~ 70 (197)
..||+|.+|++++++.+.|
T Consensus 20 PPDLdel~r~l~~kl~~~f 38 (42)
T PF12221_consen 20 PPDLDELFRKLQDKLGGLF 38 (42)
T ss_pred CCCHHHHHHHHHHHHhccc
Confidence 7899999999999988765
No 22
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=31.47 E-value=93 Score=23.87 Aligned_cols=36 Identities=19% Similarity=0.444 Sum_probs=21.9
Q ss_pred chHHHHHHHHHHHHHHHH-HHHhh-------hhHHHHhhhhhcC
Q 029189 162 RLPFTLGFIGSMAGTIYV-SMVLH-------SYILSVLFSVIQV 197 (197)
Q Consensus 162 Rl~aTi~Yi~SlvlTLy~-al~~k-------s~iLtllf~iiQv 197 (197)
..-+-+.|+.|+++|+.. .++.. .+...++++++|+
T Consensus 4 ~k~yviGFiLsliLT~i~F~~v~~~~~~~~~~~~~i~~~A~iQi 47 (96)
T TIGR02847 4 LKSYLIGFVLSVILTAIPFGLVMSGTLSKGLTLVIIIVLAVVQI 47 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCHhHHHHHHHHHHHHHH
Confidence 334677889999998643 23321 2455556667774
No 23
>COG5547 Small integral membrane protein [Function unknown]
Probab=30.66 E-value=99 Score=22.21 Aligned_cols=36 Identities=17% Similarity=0.413 Sum_probs=27.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhh
Q 029189 160 KERLPFTLGFIGSMAGTIYVSMVLHSYILSVLFSVI 195 (197)
Q Consensus 160 ~~Rl~aTi~Yi~SlvlTLy~al~~ks~iLtllf~ii 195 (197)
+-|.|--...++-+++-++.++.+-.++|+++.+.+
T Consensus 6 ~fkypIIgglvglliAili~t~GfwKtilviil~~l 41 (62)
T COG5547 6 KFKYPIIGGLVGLLIAILILTFGFWKTILVIILILL 41 (62)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666778888888988889998888764
No 24
>KOG3393 consensus Predicted membrane protein [Function unknown]
Probab=30.62 E-value=2.2e+02 Score=23.96 Aligned_cols=62 Identities=10% Similarity=-0.049 Sum_probs=35.5
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcch---hHHHHHhhhHHHHHHHHHHhc
Q 029189 86 SATSTVPSGKALMYFGLFLASGVFFIFIA-FTMFLPVMVLMPQ---KFALCFTVGCGFIIGSFFALR 148 (197)
Q Consensus 86 s~~~~Ls~~qRi~gF~~c~~~G~~f~~ls-~~lfLPl~~~~P~---kFAllfTlGsIl~l~St~FL~ 148 (197)
++..++.++-|+..|+.+..+..=+ .-| ++++...++.... -+++..=++|++++.|...++
T Consensus 82 a~g~sga~~AR~wLfiGF~l~fgsL-ias~wVli~~yv~~~~~~~v~~GvA~~~~N~~i~~s~~v~k 147 (157)
T KOG3393|consen 82 AEGCSGARGARIWLFIGFALLFGSL-IASIWVLIGKYVVKEYDGKVWPGVANFLQNVLIFFSSLVYK 147 (157)
T ss_pred cccccccchhhhHHHHHHHHHHhhh-hhhHHHHhHHHHhcCCCCcccccHHHHHHHHHHHHHHHHHh
Confidence 4446788899988776653221111 112 2233343332222 367777789999998887764
No 25
>PF14851 FAM176: FAM176 family
Probab=30.25 E-value=95 Score=25.88 Aligned_cols=34 Identities=21% Similarity=0.121 Sum_probs=27.7
Q ss_pred HHhhcchhHHHHHhhhHHHHHHHHHHhccHHHHH
Q 029189 121 VMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQL 154 (197)
Q Consensus 121 l~~~~P~kFAllfTlGsIl~l~St~FL~GP~~Ql 154 (197)
.+.-+|-+||++|.+|-..-|+-+.++..++--|
T Consensus 14 ~I~~~PE~~aLYFv~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 14 HIRDNPERFALYFVSGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 4668999999999999888888777777766555
No 26
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=30.07 E-value=1.8e+02 Score=23.33 Aligned_cols=22 Identities=0% Similarity=0.012 Sum_probs=10.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHH
Q 029189 160 KERLPFTLGFIGSMAGTIYVSM 181 (197)
Q Consensus 160 ~~Rl~aTi~Yi~SlvlTLy~al 181 (197)
..+++.++.++..+++.+.++.
T Consensus 34 ~~~~im~ifmllG~L~~l~S~~ 55 (114)
T PF11023_consen 34 ASPIIMVIFMLLGLLAILASTA 55 (114)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554444433
No 27
>COG5438 Predicted multitransmembrane protein [Function unknown]
Probab=29.79 E-value=3.7e+02 Score=25.76 Aligned_cols=53 Identities=15% Similarity=0.303 Sum_probs=37.9
Q ss_pred HHHHHHhhcchhHHHHHhhhHHHHHHHHHHhccHHHHHHhhcCCCchHHHHHHHHHHHHHHHHH
Q 029189 117 MFLPVMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGTIYVS 180 (197)
Q Consensus 117 lfLPl~~~~P~kFAllfTlGsIl~l~St~FL~GP~~Qlk~M~s~~Rl~aTi~Yi~SlvlTLy~a 180 (197)
.++|++...+..+.++..++-+...+...+..|+..+ .-..++++++.|+...
T Consensus 167 i~I~li~~g~~~i~v~ii~~viit~~tL~~v~g~n~K-----------Tl~A~~~Ti~~~~ls~ 219 (385)
T COG5438 167 ILIPLIINGFNPILVFIILCVIITAITLFMVNGINKK-----------TLAAFIGTILGTLLSI 219 (385)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcCccHH-----------HHHHHHHHHHHHHHHH
Confidence 4578888778888888777777888888888998654 2345566666665544
No 28
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.66 E-value=1.9e+02 Score=22.52 Aligned_cols=34 Identities=21% Similarity=0.038 Sum_probs=27.1
Q ss_pred hhcchhHHHHHhhhHHHH-HHHHHHhccHHHHHHh
Q 029189 123 VLMPQKFALCFTVGCGFI-IGSFFALRGPKNQLAH 156 (197)
Q Consensus 123 ~~~P~kFAllfTlGsIl~-l~St~FL~GP~~Qlk~ 156 (197)
.+.|+.|.++..+-|+.. +.+...|++-.+|=++
T Consensus 29 ~fDpyPFilLnl~lS~~Aa~~ap~IlmsQNRq~~~ 63 (108)
T PF06210_consen 29 AFDPYPFILLNLVLSLEAAYQAPLILMSQNRQAAR 63 (108)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHhhHhHHH
Confidence 468999999998877765 6788888888777654
No 29
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=28.19 E-value=1.6e+02 Score=25.87 Aligned_cols=15 Identities=20% Similarity=0.091 Sum_probs=7.9
Q ss_pred CCChHHHHHHHHHHH
Q 029189 90 TVPSGKALMYFGLFL 104 (197)
Q Consensus 90 ~Ls~~qRi~gF~~c~ 104 (197)
.-++.+-++++++.+
T Consensus 106 ~~~~~~~l~~~~~~~ 120 (224)
T PF03839_consen 106 PSPLMQYLIGALLLV 120 (224)
T ss_pred CCcHHHHHHHHHHHH
Confidence 445566665554443
No 30
>TIGR02901 QoxD cytochrome aa3 quinol oxidase, subunit IV. This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=26.53 E-value=1.1e+02 Score=23.34 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHH-HHHhh-------hhHHHHhhhhhcC
Q 029189 165 FTLGFIGSMAGTIYV-SMVLH-------SYILSVLFSVIQV 197 (197)
Q Consensus 165 aTi~Yi~SlvlTLy~-al~~k-------s~iLtllf~iiQv 197 (197)
+.+.|+.|+++|++. .++.. .++..++++++|+
T Consensus 9 yviGFiLSiiLT~i~F~~v~~~~~~~~~~~~~i~~lA~iQi 49 (94)
T TIGR02901 9 HVNGFILSLLLTFLALWVALYSDLPLAMGLTIIIIFAFIQA 49 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHH
Confidence 467888888888643 22221 2444455566663
No 31
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=25.84 E-value=1.4e+02 Score=25.88 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=0.0
Q ss_pred cccCCCCChHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHh--hcchhHHHHHhhhHHHHHHHHHH
Q 029189 85 QSATSTVPSGKALMYFGL-FLASGVFFIFIAFTM-FLPVMV--LMPQKFALCFTVGCGFIIGSFFA 146 (197)
Q Consensus 85 qs~~~~Ls~~qRi~gF~~-c~~~G~~f~~ls~~l-fLPl~~--~~P~kFAllfTlGsIl~l~St~F 146 (197)
+++...++|.-|++||++ ++++.+++..+...+ ++|++. ..-..+-+.+.++-.+.+.-.++
T Consensus 176 ~~~n~~~tW~lR~~G~llmf~G~~~~~~~l~~l~~~~P~lg~l~~~~~~~~~~~~s~~lsl~~Ia~ 241 (248)
T PF07787_consen 176 HSANNTLTWILRFIGWLLMFIGFFLLFSPLYTLVDWIPLLGNLVGFGLFLVAFIISFSLSLLTIAL 241 (248)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeechhhhHHHHHHHHHHHHHHHHHHHH
No 32
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=25.84 E-value=1.1e+02 Score=24.29 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHh--------hhhHHHHhhhhhcC
Q 029189 163 LPFTLGFIGSMAGTIYVSMVL--------HSYILSVLFSVIQV 197 (197)
Q Consensus 163 l~aTi~Yi~SlvlTLy~al~~--------ks~iLtllf~iiQv 197 (197)
+-+.+.|+.|+++|++.-... -..+..+.++++|+
T Consensus 18 k~y~iGFvLsIiLT~ipF~~vm~~~~~~~~~~~~i~~lA~iQi 60 (111)
T COG3125 18 KSYLIGFVLSIILTLIPFWVVMTGALSSTVTLIIILGLAVIQI 60 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHH
Confidence 347899999999998653321 24566777777774
No 33
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=25.53 E-value=2.6e+02 Score=20.15 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhHHHHHHH
Q 029189 101 GLFLASGVFFIFIAFTMFLPVMVLMPQKFALCFTVGCGFIIGS 143 (197)
Q Consensus 101 ~~c~~~G~~f~~ls~~lfLPl~~~~P~kFAllfTlGsIl~l~S 143 (197)
++|+.+++++.-++.+++ .+.+-..++|-.+.+.+
T Consensus 16 Ii~Fila~i~i~it~F~~--------n~~~g~i~i~I~l~l~G 50 (63)
T PF06341_consen 16 IILFILAMIFINITAFLI--------NQIAGLISIGITLFLAG 50 (63)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 457777777776665432 45555556665555443
No 34
>PF14145 YrhK: YrhK-like protein
Probab=25.43 E-value=2e+02 Score=20.00 Aligned_cols=21 Identities=38% Similarity=0.477 Sum_probs=12.5
Q ss_pred hhhHHHH-HHHHHHhccHHHHH
Q 029189 134 TVGCGFI-IGSFFALRGPKNQL 154 (197)
Q Consensus 134 TlGsIl~-l~St~FL~GP~~Ql 154 (197)
+.|..++ ++|..|+.+|.-++
T Consensus 33 ~~g~wlFiiGS~~f~i~~~i~~ 54 (59)
T PF14145_consen 33 TAGTWLFIIGSILFLIRPIIRL 54 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555543 56667777776444
No 35
>PF05255 UPF0220: Uncharacterised protein family (UPF0220); InterPro: IPR007919 This family of proteins is functionally uncharacterised.
Probab=25.36 E-value=2.3e+02 Score=23.66 Aligned_cols=59 Identities=14% Similarity=-0.090 Sum_probs=33.1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhh----cchhHHHHHhhhHHHHHHHHHHhc
Q 029189 89 STVPSGKALMYFGLFLASGVFFIFIAFT-MFLPVMVL----MPQKFALCFTVGCGFIIGSFFALR 148 (197)
Q Consensus 89 ~~Ls~~qRi~gF~~c~~~G~~f~~ls~~-lfLPl~~~----~P~kFAllfTlGsIl~l~St~FL~ 148 (197)
....++.|+..|+.+.. ++-....|.. ++.+.+.- .+.-.++---+.|++++.|...|+
T Consensus 93 ~~~~~~aR~~LFigf~l-~fggl~~s~~vli~~yv~~~~~~~~~~~Gva~vlqN~lI~~Sslvl~ 156 (166)
T PF05255_consen 93 CGGAWRARLWLFIGFAL-SFGGLAGSVWVLILKYVVPQYTKPTLWPGVANVLQNALIFLSSLVLW 156 (166)
T ss_pred CchhHHHHHHHHHHHHH-HHHHHHHHHHHhhcccccCCCCCCCcccccHHHHHHHHHHHHHHHHH
Confidence 34678999877665422 2222222222 23333332 122356667789999999888775
No 36
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.32 E-value=97 Score=29.38 Aligned_cols=24 Identities=13% Similarity=0.200 Sum_probs=13.1
Q ss_pred HHHhhcchhHHHHHhhhHHHHHHH
Q 029189 120 PVMVLMPQKFALCFTVGCGFIIGS 143 (197)
Q Consensus 120 Pl~~~~P~kFAllfTlGsIl~l~S 143 (197)
|+.=...|+=+..+++|-..+++.
T Consensus 208 PLWP~~mR~gvyY~sig~~gfl~~ 231 (372)
T KOG2927|consen 208 PLWPRRMRQGVYYLSIGAGGFLAF 231 (372)
T ss_pred ccCcHHHhcceeeeecchhHHHHH
Confidence 544344466666667765444443
No 37
>PRK11660 putative transporter; Provisional
Probab=25.06 E-value=6.4e+02 Score=24.46 Aligned_cols=77 Identities=9% Similarity=0.109 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhHHHHHHHHHHhccHHHHHHhhcCCCchHHHHHHHHHH
Q 029189 94 GKALMYFGLFLASGVFFIFIAFTMFLPVMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSM 173 (197)
Q Consensus 94 ~qRi~gF~~c~~~G~~f~~ls~~lfLPl~~~~P~kFAllfTlGsIl~l~St~FL~GP~~Qlk~M~s~~Rl~aTi~Yi~Sl 173 (197)
+.|+-+.+......+.+.++ .|++..-|. ..++.+++..+...+.- .+++++..+.++.-..+++.++
T Consensus 351 rT~la~iv~a~~~ll~ll~l-----~~ll~~iP~-----~vLa~ili~~~~~m~~~--~~~~~~~~~~~~~d~~~~~~~~ 418 (568)
T PRK11660 351 TSPISAVIHALLVLLALLVL-----APLLSYLPL-----SAMAALLLMVAWNMSEA--HKVVDLLRHAPKDDIIVMLLCM 418 (568)
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHhCcH-----HHHHHHHHHHHHHhhhH--HHHHHHHHhCCHHHHHHHHHHH
Confidence 56777766654443332222 233332232 23466777777665432 2355555443333445566666
Q ss_pred HHHHHHHHH
Q 029189 174 AGTIYVSMV 182 (197)
Q Consensus 174 vlTLy~al~ 182 (197)
+.|++..+.
T Consensus 419 ~~~~~~~~~ 427 (568)
T PRK11660 419 SLTVLFDMV 427 (568)
T ss_pred HHHHHHhHH
Confidence 666655443
No 38
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=24.97 E-value=5.2e+02 Score=26.55 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=16.1
Q ss_pred HhhhHHHHHHHHHHhccHHHHHHhhcCCCchH
Q 029189 133 FTVGCGFIIGSFFALRGPKNQLAHMSSKERLP 164 (197)
Q Consensus 133 fTlGsIl~l~St~FL~GP~~Qlk~M~s~~Rl~ 164 (197)
.++...+.+....++.=+...+-.=++++|++
T Consensus 54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~ 85 (1140)
T PRK06814 54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLA 85 (1140)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHH
Confidence 33344344444444444445566666666654
No 39
>KOG1688 consensus Golgi proteins involved in ER retention (RER) [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.50 E-value=2e+02 Score=24.83 Aligned_cols=60 Identities=18% Similarity=0.282 Sum_probs=35.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhcchhHHHHHhhhHHHHHHHHHHhccHHHHHHhhcCCCchHHH
Q 029189 91 VPSGKALMYFGLFLASGVFFIFIAFT---MFLPVMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFT 166 (197)
Q Consensus 91 Ls~~qRi~gF~~c~~~G~~f~~ls~~---lfLPl~~~~P~kFAllfTlGsIl~l~St~FL~GP~~Qlk~M~s~~Rl~aT 166 (197)
||.-+=+....=|+.++.+|.+.+++ .|.|+++ +| --+.|..-.++|++||.+=.-.|++
T Consensus 114 LPEFKFW~s~~ka~~ia~~~tfF~~fdVPVFwPILl--------~Y--------~i~lf~ltmrRqI~HMiKyrY~Pf~ 176 (188)
T KOG1688|consen 114 LPEFKFWYSSTKATLIALLCTFFSIFDVPVFWPILL--------MY--------FIVLFFLTMRRQIAHMIKYRYIPFD 176 (188)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHH--------HH--------HHHHHHHHHHHHHHHHHhhcccccc
Confidence 44444444444566677777776654 3455443 22 2234555678999999986666554
No 40
>PF07664 FeoB_C: Ferrous iron transport protein B C terminus; InterPro: IPR011640 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions []. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus has been previously erroneously described as being ATP-binding []. Recent work shows that it is similar to eukaryotic G-proteins and that it is a GTPase [].; GO: 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane
Probab=23.99 E-value=91 Score=20.92 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhH
Q 029189 166 TLGFIGSMAGTIYVSMVLHSYI 187 (197)
Q Consensus 166 Ti~Yi~SlvlTLy~al~~ks~i 187 (197)
-..|+.++++.+..+.++++.+
T Consensus 3 ~~~y~~~~~~~l~~~~il~~~~ 24 (54)
T PF07664_consen 3 FSLYLLGILVALLVGLILKKTI 24 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 4679999999999999888544
No 41
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=23.58 E-value=3.5e+02 Score=24.44 Aligned_cols=77 Identities=14% Similarity=0.236 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhHHHH-HHHHHHhccHH-------HHHHhhcCCCchHHHHHHHHHHHHH
Q 029189 105 ASGVFFIFIAFTMFLPVMVLMPQKFALCFTVGCGFI-IGSFFALRGPK-------NQLAHMSSKERLPFTLGFIGSMAGT 176 (197)
Q Consensus 105 ~~G~~f~~ls~~lfLPl~~~~P~kFAllfTlGsIl~-l~St~FL~GP~-------~Qlk~M~s~~Rl~aTi~Yi~SlvlT 176 (197)
.+|.++.++.+.. .+-+.-.+.|..++.++++++. ++++..-.++. =|++..+-.---++...+..+|..+
T Consensus 21 llGclfiI~tf~~-~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~~~~~~~~s~lC~~Qafliq~f~~as~lWt~~iA~n 99 (303)
T PF05462_consen 21 LLGCLFIIITFCL-FKRLRKPINRLIFYLSIANLLTNVASMIMTLSPSAGENSFLCQFQAFLIQFFMLASFLWTLCIAFN 99 (303)
T ss_pred HHHHHHHHHHHHH-HHHhCccHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHhHHHHHhhHHHHHHHHHHHHH
Confidence 4566666666543 4777777889999999998873 33333222221 1111111111234555666666666
Q ss_pred HHHHHH
Q 029189 177 IYVSMV 182 (197)
Q Consensus 177 Ly~al~ 182 (197)
||..++
T Consensus 100 ly~~~~ 105 (303)
T PF05462_consen 100 LYLTFV 105 (303)
T ss_pred hhheeE
Confidence 666554
No 42
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=23.08 E-value=2.8e+02 Score=24.66 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=20.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhHHHHHH
Q 029189 90 TVPSGKALMYFGLFLASGVFFIFIAFTMFLPVMVLMPQKFALCFTVGCGFIIG 142 (197)
Q Consensus 90 ~Ls~~qRi~gF~~c~~~G~~f~~ls~~lfLPl~~~~P~kFAllfTlGsIl~l~ 142 (197)
.-++.+-++++++..+ +++.++| |+.=..-+.-....++|-+.+++
T Consensus 114 ~~~~~~~l~~~~~~~~------ila~~lF-PlWP~~~r~gv~YlS~~~lgll~ 159 (232)
T TIGR00869 114 PRPYMDYLIVILVVSI------ILALVLF-PLWPRFMRRGSWYLSLGALGIIG 159 (232)
T ss_pred CCcHHHHHHHHHHHHH------HHHHhhc-ccChHHHhHhHHHHHHHHHHHHH
Confidence 3455666655544433 3333333 53222223444444555444443
No 43
>PRK11588 hypothetical protein; Provisional
Probab=22.36 E-value=7.6e+02 Score=24.37 Aligned_cols=66 Identities=15% Similarity=0.026 Sum_probs=41.8
Q ss_pred cchhHHHHHhhhHHHHHHHHHHhccHHHHHHhhc-----CCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhc
Q 029189 125 MPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMS-----SKERLPFTLGFIGSMAGTIYVSMVLHSYILSVLFSVIQ 196 (197)
Q Consensus 125 ~P~kFAllfTlGsIl~l~St~FL~GP~~Qlk~M~-----s~~Rl~aTi~Yi~SlvlTLy~al~~ks~iLtllf~iiQ 196 (197)
++++++=.|.=|. =-+.+.+++.|..+++.-++ ++....-|++|..+-.+. .+...+..+...++|
T Consensus 338 ~~~~i~~~f~~Ga-~~m~~~aliig~A~~i~~il~~g~~~~g~iidTIv~~~~~~L~-----~lp~~~~ai~m~i~~ 408 (506)
T PRK11588 338 TVNTMASSFTEGA-RMMLAPALLVGFAKGILLLLGGGEPGDPSVLNTILNSAGGAIS-----GLPDAVSAWFMLLFQ 408 (506)
T ss_pred CHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhc-----cCCHHHHHHHHHHHH
Confidence 4555554444332 34567888999999999999 677788899887774332 334445544444443
No 44
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=22.08 E-value=53 Score=26.67 Aligned_cols=49 Identities=22% Similarity=0.300 Sum_probs=42.4
Q ss_pred HHHHHh-hcchhHHHHHhhhHHHHHHHHHHhccHHHHHHhhcCCCchHHH
Q 029189 118 FLPVMV-LMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFT 166 (197)
Q Consensus 118 fLPl~~-~~P~kFAllfTlGsIl~l~St~FL~GP~~Qlk~M~s~~Rl~aT 166 (197)
.||.++ .+|..|+-.|-|.++=.++++.++.|.+.|-+.++++=++--+
T Consensus 48 ~LP~LvAaNPVNYGkP~kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~ 97 (127)
T PF04034_consen 48 LLPYLVAANPVNYGKPCKLSCVEALAAALYILGFKEQAEELLSKFKWGHT 97 (127)
T ss_pred cCchhhccCCcccCCcccccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHH
Confidence 356554 6999999999999999999999999999999999988776544
No 45
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=21.99 E-value=4.1e+02 Score=21.08 Aligned_cols=57 Identities=12% Similarity=-0.052 Sum_probs=28.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhHHHHHHHHHHhccHHHHH
Q 029189 90 TVPSGKALMYFGLFLASGVFFIFIAFTMFLPVMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQL 154 (197)
Q Consensus 90 ~Ls~~qRi~gF~~c~~~G~~f~~ls~~lfLPl~~~~P~kFAllfTlGsIl~l~St~FL~GP~~Ql 154 (197)
+||..|=.+.-++++++|++..+.... +. ...|+.-|.+-+..+++..+-.+..+.+
T Consensus 20 GlT~~El~~~a~~~~~~g~~~gl~la~-----~~---g~~a~~pt~~ll~~~~~v~~gg~~l~rl 76 (121)
T PF11990_consen 20 GLTADELGLAAGVGFVAGLVVGLPLAL-----LT---GWWAMIPTGALLGPILGVFVGGKLLARL 76 (121)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH-----HH---HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 566677666666666666555333221 11 2234445555555555444444443333
No 46
>PRK10459 colanic acid exporter; Provisional
Probab=21.33 E-value=6.3e+02 Score=23.04 Aligned_cols=53 Identities=9% Similarity=-0.026 Sum_probs=33.1
Q ss_pred hcchhHHHHHhhhHHHHHHHHHHhccHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 029189 124 LMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGT 176 (197)
Q Consensus 124 ~~P~kFAllfTlGsIl~l~St~FL~GP~~Qlk~M~s~~Rl~aTi~Yi~SlvlT 176 (197)
+.|..|++.-..-++..+.....-.|-.+.+-+.-+.++.....++..+++.+
T Consensus 36 L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii~~~~~~~~~~~~~~~~~~~~~ 88 (492)
T PRK10459 36 LDNHQFGLLTMSLVIIGFADTLSDMGIGASIIQRQDISHLQLSTLYWLNVGLG 88 (492)
T ss_pred CCHHHccHHHHHHHHHHHHHHHHHcCHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 58999998777777777777777778766665444443433333444444333
No 47
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=21.02 E-value=4.2e+02 Score=20.83 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=13.0
Q ss_pred cchhHHHHHhhhHHHHHHHHHH
Q 029189 125 MPQKFALCFTVGCGFIIGSFFA 146 (197)
Q Consensus 125 ~P~kFAllfTlGsIl~l~St~F 146 (197)
+..||++...+--...+++...
T Consensus 61 ~~~k~~~~~~~~~~~~~~~~~~ 82 (145)
T PF09925_consen 61 RLAKLGLLLALLLLSYVGGFWL 82 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5568888776654444444443
No 48
>PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=20.98 E-value=99 Score=21.61 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=17.3
Q ss_pred HHHhhhHHHHHHHHHHhccHHHH
Q 029189 131 LCFTVGCGFIIGSFFALRGPKNQ 153 (197)
Q Consensus 131 llfTlGsIl~l~St~FL~GP~~Q 153 (197)
++.|+|-++...-.+||.|+.++
T Consensus 2 iL~tiG~~~~~~~I~~lIgfity 24 (53)
T PF13131_consen 2 ILLTIGIILFTIFIFFLIGFITY 24 (53)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 46778877777778888888654
Done!