Query 029189
Match_columns 197
No_of_seqs 137 out of 364
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 14:27:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029189.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029189hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zwl_E Eukaryotic translation 11.4 68 0.0023 21.1 0.6 13 28-40 18-30 (50)
2 3ro2_B Peptide of nuclear mito 11.1 54 0.0018 19.1 0.0 15 27-41 12-26 (28)
3 4gc0_A D-xylose-proton symport 10.7 6E+02 0.02 21.0 6.5 15 128-142 407-421 (491)
4 3o7q_A L-fucose-proton symport 9.6 7.1E+02 0.024 20.0 9.3 26 125-151 293-318 (438)
5 3arc_T Photosystem II reaction 9.5 2.7E+02 0.0091 16.7 2.8 16 99-114 7-22 (32)
6 1pw4_A Glycerol-3-phosphate tr 8.4 8E+02 0.027 19.8 10.4 52 117-171 273-329 (451)
7 1rij_A E6APN1 peptide; Trp-CAG 7.0 59 0.002 18.5 -0.9 16 2-17 3-19 (26)
8 2k21_A Potassium voltage-gated 6.4 3.6E+02 0.012 21.2 2.9 16 27-42 19-34 (138)
9 2xut_A Proton/peptide symporte 6.3 1.1E+03 0.038 19.6 7.9 13 151-163 131-143 (524)
10 3fym_A Putative uncharacterize 5.9 2.6E+02 0.0089 20.3 1.9 16 51-66 61-76 (130)
No 1
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=11.41 E-value=68 Score=21.05 Aligned_cols=13 Identities=31% Similarity=0.787 Sum_probs=10.9
Q ss_pred chhhhchhhhhhc
Q 029189 28 SSLLADWNSYAAT 40 (197)
Q Consensus 28 ~s~la~w~~y~~~ 40 (197)
-.+|.+|++|...
T Consensus 18 RrlLeEW~awRa~ 30 (50)
T 3zwl_E 18 RELLKQWTEYREK 30 (50)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4589999999985
No 2
>3ro2_B Peptide of nuclear mitotic apparatus protein 1; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Homo sapiens}
Probab=11.10 E-value=54 Score=19.10 Aligned_cols=15 Identities=33% Similarity=0.607 Sum_probs=11.0
Q ss_pred Cchhhhchhhhhhcc
Q 029189 27 SSSLLADWNSYAATR 41 (197)
Q Consensus 27 ~~s~la~w~~y~~~~ 41 (197)
.|.-|+|||..|.-+
T Consensus 12 epeqlddw~riaelq 26 (28)
T 3ro2_B 12 EPEQLDDWNRIAELQ 26 (28)
T ss_dssp CCCCCCCTTTGGGC-
T ss_pred CcccchhHHHHHHHh
Confidence 356689999988754
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=10.68 E-value=6e+02 Score=21.04 Aligned_cols=15 Identities=7% Similarity=-0.204 Sum_probs=7.7
Q ss_pred hHHHHHhhhHHHHHH
Q 029189 128 KFALCFTVGCGFIIG 142 (197)
Q Consensus 128 kFAllfTlGsIl~l~ 142 (197)
-.++..+++.+..+.
T Consensus 407 ~~g~~~~~~~~~~~i 421 (491)
T 4gc0_A 407 ALAIAVAAQWLANYF 421 (491)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 355555555554433
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=9.55 E-value=7.1e+02 Score=20.04 Aligned_cols=26 Identities=8% Similarity=-0.394 Sum_probs=15.0
Q ss_pred cchhHHHHHhhhHHHHHHHHHHhccHH
Q 029189 125 MPQKFALCFTVGCGFIIGSFFALRGPK 151 (197)
Q Consensus 125 ~P~kFAllfTlGsIl~l~St~FL~GP~ 151 (197)
.+...++.+++..+..+.+. ++.|+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~-~~~g~l 318 (438)
T 3o7q_A 293 TAGFAANYLTGTMVCFFIGR-FTGTWL 318 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 55566677777666555543 444544
No 5
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=9.55 E-value=2.7e+02 Score=16.74 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 029189 99 YFGLFLASGVFFIFIA 114 (197)
Q Consensus 99 gF~~c~~~G~~f~~ls 114 (197)
.|+....+|++|+.++
T Consensus 7 t~ll~~tlgiiFFAI~ 22 (32)
T 3arc_T 7 VFIFACIIALFFFAIF 22 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh
Confidence 4555566677765444
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=8.43 E-value=8e+02 Score=19.77 Aligned_cols=52 Identities=13% Similarity=-0.049 Sum_probs=25.7
Q ss_pred HHHHHHhh-----cchhHHHHHhhhHHHHHHHHHHhccHHHHHHhhcCCCchHHHHHHHH
Q 029189 117 MFLPVMVL-----MPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIG 171 (197)
Q Consensus 117 lfLPl~~~-----~P~kFAllfTlGsIl~l~St~FL~GP~~Qlk~M~s~~Rl~aTi~Yi~ 171 (197)
.++|.+.. .+...++.+++..+..+.+. ++.|.. .++...++|....+..+.
T Consensus 273 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l--~~~~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 273 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGT-LLCGWM--SDKVFRGNRGATGVFFMT 329 (451)
T ss_dssp HHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHhcCCchhHHHHHHH
Confidence 34566552 34556677777666655543 334432 233333444444444333
No 7
>1rij_A E6APN1 peptide; Trp-CAGE, E6-binding domain, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.32.1.1
Probab=6.95 E-value=59 Score=18.48 Aligned_cols=16 Identities=13% Similarity=0.426 Sum_probs=10.4
Q ss_pred hhhhhhhcc-CCCCCch
Q 029189 2 QKMAQGWFS-QSSGTED 17 (197)
Q Consensus 2 ~~~~~~~~~-~~~~~~~ 17 (197)
|+.+-.|+. |+|++..
T Consensus 3 qellgqwlkdggpssgr 19 (26)
T 1rij_A 3 QELLGQWLKDGGPSSGR 19 (26)
T ss_dssp HHHHHHHHHTTGGGSSS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 677778985 6654443
No 8
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=6.39 E-value=3.6e+02 Score=21.15 Aligned_cols=16 Identities=13% Similarity=0.202 Sum_probs=11.5
Q ss_pred CchhhhchhhhhhccC
Q 029189 27 SSSLLADWNSYAATRD 42 (197)
Q Consensus 27 ~~s~la~w~~y~~~~~ 42 (197)
.|=|...|..|...+.
T Consensus 19 ~~~L~~l~~e~~~~g~ 34 (138)
T 2k21_A 19 TPFLTKLWQETVQQGG 34 (138)
T ss_dssp CTTHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 4567788999987543
No 9
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=6.34 E-value=1.1e+03 Score=19.63 Aligned_cols=13 Identities=0% Similarity=-0.031 Sum_probs=8.1
Q ss_pred HHHHHhhcCCCch
Q 029189 151 KNQLAHMSSKERL 163 (197)
Q Consensus 151 ~~Qlk~M~s~~Rl 163 (197)
...+.+.+.++++
T Consensus 131 ~~~~~~~~~~~~r 143 (524)
T 2xut_A 131 SSFMGDQFDQSNK 143 (524)
T ss_dssp HHHHHHTCSTTTT
T ss_pred HHHHHHHcCccch
Confidence 4566677766554
No 10
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=5.90 E-value=2.6e+02 Score=20.31 Aligned_cols=16 Identities=6% Similarity=0.310 Sum_probs=8.6
Q ss_pred ccccHHHHhhhhcccc
Q 029189 51 FGFDIESAVRSANDTV 66 (197)
Q Consensus 51 ~~~~~~~~~~~~~~~~ 66 (197)
++.|.++-+....+..
T Consensus 61 L~v~~~~l~~~~~~~~ 76 (130)
T 3fym_A 61 VNIEPNQLIQAHQDEI 76 (130)
T ss_dssp TTCCHHHHHHHTTTTS
T ss_pred hCCCHHHHHHHHHHhC
Confidence 3566666665544443
Done!