Query 029189
Match_columns 197
No_of_seqs 137 out of 364
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 14:27:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029189.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029189hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dk8a1 a.4.5.85 (A:8-75) DNA- 19.3 20 0.0015 23.5 1.4 30 73-104 19-48 (68)
2 d1nekc_ f.21.2.2 (C:) Succinat 16.2 1.6E+02 0.011 20.0 9.7 20 92-111 27-46 (129)
3 d2axtl1 f.23.31.1 (L:1-37) Pho 5.2 2.9E+02 0.021 15.5 3.5 22 90-111 11-32 (37)
4 d1e6yb1 a.89.1.1 (B:2186-2433) 4.2 89 0.0065 24.5 0.0 12 31-42 112-123 (248)
5 d1hbnb1 a.89.1.1 (B:189-443) B 4.2 90 0.0066 24.6 0.0 12 31-42 111-122 (255)
6 d1q90a3 f.23.23.1 (A:248-292) 3.9 2.9E+02 0.021 16.2 2.3 21 159-179 1-21 (45)
7 d1y0pa3 d.168.1.1 (A:362-504) 3.5 1.6E+02 0.011 20.1 0.9 13 31-43 104-116 (143)
8 d1bbha_ a.24.3.2 (A:) Cytochro 3.5 2.1E+02 0.015 19.3 1.6 16 25-40 72-87 (131)
9 d1pw4a_ f.38.1.1 (A:) Glycerol 3.3 7.7E+02 0.056 17.6 10.0 42 126-170 284-325 (447)
10 d1vf5c3 f.23.23.1 (C:250-286) 3.3 3.6E+02 0.026 15.1 2.3 21 159-179 2-22 (37)
No 1
>d2dk8a1 a.4.5.85 (A:8-75) DNA-directed RNA polymerase III subunit RPC6, RPO3F {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.28 E-value=20 Score=23.50 Aligned_cols=30 Identities=13% Similarity=0.279 Sum_probs=23.1
Q ss_pred eccccccCCccccccCCCCChHHHHHHHHHHH
Q 029189 73 VSKGVRDLPGNLQSATSTVPSGKALMYFGLFL 104 (197)
Q Consensus 73 ~s~g~~~~~~~~qs~~~~Ls~~qRi~gF~~c~ 104 (197)
.-+|++| .+.|.++|+++-.||+.+-=-++
T Consensus 19 ~P~GitD--~dl~~a~p~v~~~qRv~aiN~LL 48 (68)
T d2dk8a1 19 FPHGITD--QVIQNEMPHIEAQQRAVAINRLL 48 (68)
T ss_dssp CSSCEEH--HHHHHHCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCh--HHHHHHCcCCCHHHHHHHHHHHH
Confidence 4588887 45789999999999987644443
No 2
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=16.16 E-value=1.6e+02 Score=19.99 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=13.6
Q ss_pred ChHHHHHHHHHHHHHHHHHH
Q 029189 92 PSGKALMYFGLFLASGVFFI 111 (197)
Q Consensus 92 s~~qRi~gF~~c~~~G~~f~ 111 (197)
|=..|+.|.++.+++.++..
T Consensus 27 SI~HRisGv~l~~~~~~~~~ 46 (129)
T d1nekc_ 27 SILHRVSGVITFVAVGILLW 46 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34689999887666655543
No 3
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.21 E-value=2.9e+02 Score=15.46 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=16.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHH
Q 029189 90 TVPSGKALMYFGLFLASGVFFI 111 (197)
Q Consensus 90 ~Ls~~qRi~gF~~c~~~G~~f~ 111 (197)
.|.++.-..|-+..+++|++|+
T Consensus 11 eLNrtsLy~GlLlifvl~vLFs 32 (37)
T d2axtl1 11 ELNRTSLYLGLLLILVLALLFS 32 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHH
Confidence 4677777778778888888875
No 4
>d1e6yb1 a.89.1.1 (B:2186-2433) Beta chain {Archaeon Methanosarcina barkeri [TaxId: 2208]}
Probab=4.18 E-value=89 Score=24.52 Aligned_cols=12 Identities=33% Similarity=0.695 Sum_probs=9.5
Q ss_pred hhchhhhhhccC
Q 029189 31 LADWNSYAATRD 42 (197)
Q Consensus 31 la~w~~y~~~~~ 42 (197)
.+.||+|++++-
T Consensus 112 ~~lWNAYaaAG~ 123 (248)
T d1e6yb1 112 VPKWNACAAVGT 123 (248)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 468999999753
No 5
>d1hbnb1 a.89.1.1 (B:189-443) Beta chain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=4.15 E-value=90 Score=24.63 Aligned_cols=12 Identities=58% Similarity=0.852 Sum_probs=9.4
Q ss_pred hhchhhhhhccC
Q 029189 31 LADWNSYAATRD 42 (197)
Q Consensus 31 la~w~~y~~~~~ 42 (197)
.+.||+|++++-
T Consensus 111 ~~lWNAYaaAG~ 122 (255)
T d1hbnb1 111 LAMWNAYAAAGL 122 (255)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 467999999753
No 6
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.90 E-value=2.9e+02 Score=16.21 Aligned_cols=21 Identities=19% Similarity=0.077 Sum_probs=14.8
Q ss_pred CCCchHHHHHHHHHHHHHHHH
Q 029189 159 SKERLPFTLGFIGSMAGTIYV 179 (197)
Q Consensus 159 s~~Rl~aTi~Yi~SlvlTLy~ 179 (197)
+|.|+.--++|+++++++=+.
T Consensus 1 nP~Rv~gll~F~~~v~laQi~ 21 (45)
T d1q90a3 1 NPARIQGLLVFFSFVLLTQVL 21 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 355777777888887777655
No 7
>d1y0pa3 d.168.1.1 (A:362-504) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}
Probab=3.51 E-value=1.6e+02 Score=20.10 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=10.9
Q ss_pred hhchhhhhhccCC
Q 029189 31 LADWNSYAATRDA 43 (197)
Q Consensus 31 la~w~~y~~~~~~ 43 (197)
+++||.|+..+.+
T Consensus 104 v~~yN~~~~~G~D 116 (143)
T d1y0pa3 104 VARYNSLVSSGKD 116 (143)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHhcCCC
Confidence 7899999998654
No 8
>d1bbha_ a.24.3.2 (A:) Cytochrome c' {Chromatium vinosum [TaxId: 1049]}
Probab=3.51 E-value=2.1e+02 Score=19.29 Aligned_cols=16 Identities=0% Similarity=0.092 Sum_probs=12.6
Q ss_pred CCCchhhhchhhhhhc
Q 029189 25 SSSSSLLADWNSYAAT 40 (197)
Q Consensus 25 ~~~~s~la~w~~y~~~ 40 (197)
...|.+-.||..+...
T Consensus 72 ~A~~~IW~~~~~F~~~ 87 (131)
T d1bbha_ 72 RVKPEFFQNMEDVGKI 87 (131)
T ss_dssp CBCGGGTTCHHHHHHH
T ss_pred ccchHHHhCHHHHHHH
Confidence 5678899999888764
No 9
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=3.33 E-value=7.7e+02 Score=17.55 Aligned_cols=42 Identities=14% Similarity=-0.062 Sum_probs=18.9
Q ss_pred chhHHHHHhhhHHHHHHHHHHhccHHHHHHhhcCCCchHHHHHHH
Q 029189 126 PQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFI 170 (197)
Q Consensus 126 P~kFAllfTlGsIl~l~St~FL~GP~~Qlk~M~s~~Rl~aTi~Yi 170 (197)
+..-+..+++..+..+.+.. +.|. ..++...+.|....+...
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~-~~g~--~~~~~~~~~~~~~~~~~~ 325 (447)
T d1pw4a_ 284 LDKSSWAYFLYEYAGIPGTL-LCGW--MSDKVFRGNRGATGVFFM 325 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHH--HHHHTSTTCHHHHHHHHH
T ss_pred cchhhhhhhcchhhhhhhhh-hhhh--hhhhccccccccccchhH
Confidence 44455555555544444322 2332 234455555554444443
No 10
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.33 E-value=3.6e+02 Score=15.14 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=14.4
Q ss_pred CCCchHHHHHHHHHHHHHHHH
Q 029189 159 SKERLPFTLGFIGSMAGTIYV 179 (197)
Q Consensus 159 s~~Rl~aTi~Yi~SlvlTLy~ 179 (197)
+|.|+.--++|+.++.++=+.
T Consensus 2 ~p~Rv~gl~~F~~~v~laQi~ 22 (37)
T d1vf5c3 2 DPNRVKWMIAFICLVMLAQLM 22 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 456777777887777776554
Done!