BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029191
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 57/96 (59%), Gaps = 6/96 (6%)
Query: 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
+T + S+FD IA+ D+ V++ + A+WC C + P +EK + Y P+ FY +D
Sbjct: 2 VTQFKTASEFDSAIAQ----DKLVVVDFYATWCGPCKMIAPMIEKFSEQY-PQADFYKLD 56
Query: 143 VNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGH 178
V+ + + + V MPT+ L+K+GK+ A+V+G +
Sbjct: 57 VDEL-GDVAQKNEVSAMPTLLLFKNGKEVAKVVGAN 91
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 57/96 (59%), Gaps = 6/96 (6%)
Query: 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
+T + S+FD IA+ D+ V++ + A+WC C + P +EK + Y P+ FY +D
Sbjct: 8 VTQFKTASEFDSAIAQ----DKLVVVDFYATWCGPCKMIAPMIEKFSEQY-PQADFYKLD 62
Query: 143 VNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGH 178
V+ + + + V MPT+ L+K+GK+ A+V+G +
Sbjct: 63 VDEL-GDVAQKNEVSAMPTLLLFKNGKEVAKVVGAN 97
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
+T + S S++D +A +L V++ + A+WC C + P +EK A Y FY +D
Sbjct: 2 VTQLKSASEYDSALASGDKL---VVVDFFATWCGPCKMIAPMIEKFAEQYSDA-AFYKLD 57
Query: 143 VNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGH 178
V+ V + +A V MPT+ +K GK+ V+G +
Sbjct: 58 VDEV-SDVAQKAEVSSMPTLIFYKGGKEVTRVVGAN 92
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 104 ESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQ 163
E ++ + A WC C+ L P +E+LA DY P++ F ++ + P + AR GVM +PT+
Sbjct: 17 EIAVVDFWAEWCAPCLILAPIIEELAEDY-PQVGFGKLNSDENP-DIAARYGVMSLPTVI 74
Query: 164 LWKDGKKQAEVIGG 177
+KDG+ E+IG
Sbjct: 75 FFKDGEPVDEIIGA 88
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
+T + S S++D +A +L V++ + A+WC C + P +EK A Y FY +D
Sbjct: 9 VTQLKSASEYDSALASGDKL---VVVDFFATWCGPCKMIAPMIEKFAEQYSDA-AFYKLD 64
Query: 143 VNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGH 178
V+ V + +A V MPT+ +K GK+ V+G +
Sbjct: 65 VDEV-SDVAQKAEVSSMPTLIFYKGGKEVTRVVGAN 99
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 56/96 (58%), Gaps = 6/96 (6%)
Query: 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
+T + S+FD IA+ D+ V++ + A+WC + P +EK + Y P+ FY +D
Sbjct: 8 VTQFKTASEFDSAIAQ----DKLVVVDFYATWCGPSKMIAPMIEKFSEQY-PQADFYKLD 62
Query: 143 VNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGH 178
V+ + + + V MPT+ L+K+GK+ A+V+G +
Sbjct: 63 VDEL-GDVAQKNEVSAMPTLLLFKNGKEVAKVVGAN 97
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162
D+ V++ + A+WC C + P LE +AA+Y ++ ++++ P A+ GVM +PT+
Sbjct: 23 DKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGT-AAKYGVMSIPTL 81
Query: 163 QLWKDGKKQAEVIGGHKSYLVINEVREMIGN 193
+++ G+ ++G ++ ++ + I +
Sbjct: 82 NVYQGGEVAKTIVGAKPKAAIVRDLEDFIAD 112
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
+++ FD + QL + + A+WC C + P LE+LAADY + +DV+ P
Sbjct: 9 TDADFDSKVESGVQL-----VDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENP 63
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
A+ VM +PT+ ++KDG+ +V+G
Sbjct: 64 ST-AAKYEVMSIPTLIVFKDGQPVDKVVG 91
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
+++ FD + QL + + A+WC C + P LE+LAADY + +DV+ P
Sbjct: 10 TDADFDSKVESGVQL-----VDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENP 64
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
A+ VM +PT+ ++KDG+ +V+G
Sbjct: 65 ST-AAKYEVMSIPTLIVFKDGQPVDKVVG 92
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
+T + S S++D +A +L V++ + A+WC + P +EK A Y FY +D
Sbjct: 10 VTQLKSASEYDSALASGDKL---VVVDFFATWCGPSKMIAPMIEKFAEQYSDA-AFYKLD 65
Query: 143 VNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGH 178
V+ V + +A V MPT+ +K GK+ V+G +
Sbjct: 66 VDEV-SDVAQKAEVSSMPTLIFYKGGKEVTRVVGAN 100
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
+T + S S++D +A +L V++ + A+WC + P +EK A Y FY +D
Sbjct: 2 VTQLKSASEYDSALASGDKL---VVVDFFATWCGPSKMIAPMIEKFAEQYSDA-AFYKLD 57
Query: 143 VNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGH 178
V+ V + +A V MPT+ +K GK+ V+G +
Sbjct: 58 VDEV-SDVAQKAEVSSMPTLIFYKGGKEVTRVVGAN 92
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
+++ FD + QL + + A+WC C + P LE+LAADY + +DV+ P
Sbjct: 10 TDADFDSKVESGVQL-----VDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENP 64
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
A+ VM +PT+ ++KDG+ +V+G
Sbjct: 65 ST-AAKYEVMSIPTLIVFKDGQPVDKVVG 92
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
+T + + ++F +I + ++ ++I + A+WC C ++P L KL Y P +RF D
Sbjct: 14 ITKLTNLTEFRNLIKQ----NDKLVIDFYATWCGPCKMMQPHLTKLIQAY-PDVRFVKCD 68
Query: 143 VNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYL 182
V+ P + V MPT L KDG+ ++IG + + L
Sbjct: 69 VDESPD-IAKECEVTAMPTFVLGKDGQLIGKIIGANPTAL 107
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 54/97 (55%), Gaps = 6/97 (6%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
+ S+++FD +I++ +E VI+ + A WC C + P E+ + Y ++ F VDV+
Sbjct: 13 VTSQAEFDSIISQ----NELVIVDFFAEWCGPCKRIAPFYEECSKTY-TKMVFIKVDVDE 67
Query: 146 VPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYL 182
V ++ + + MPT +++K+G ++G + S L
Sbjct: 68 V-SEVTEKENITSMPTFKVYKNGSSVDTLLGANDSAL 103
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 92 FDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLV 151
FD I + ++ V++ + A WC C+ L P +E+LA DY P++ F ++ +
Sbjct: 16 FDEFITK----NKIVVVDFWAEWCAPCLILAPVIEELANDY-PQVAFGKLNTEE-SQDIA 69
Query: 152 ARAGVMKMPTIQLWKDGKKQAEVIGG 177
R G+M +PTI +K+G+ +++G
Sbjct: 70 MRYGIMSLPTIMFFKNGELVDQILGA 95
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ +FD +A + + VII + ASWC C + P + A + P F VDV+ +
Sbjct: 13 TKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKF-PGAIFLKVDVDEL- 70
Query: 148 HKLVARA-GVMKMPTIQLWKDGKKQAEVIGGHK 179
K VA A V MPT KDG+K V+GG K
Sbjct: 71 -KDVAEAYNVEAMPTFLFIKDGEKVDSVVGGRK 102
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ +FD + +A++ + VII + ASWC C ++ P + A + P F VDV+ +
Sbjct: 21 NKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKF-PGAVFLKVDVDEL- 78
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYL 182
++ + V MPT KDG + +V+G K L
Sbjct: 79 KEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDL 113
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
+++ FD + QL + W A+WC + P LE+LAADY + +DV+ P
Sbjct: 10 TDADFDSKVESGVQL----VDFW-ATWCGTSKMIAPVLEELAADYEGKADILKLDVDENP 64
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
A+ VM +PT+ ++KDG+ +V+G
Sbjct: 65 ST-AAKYEVMSIPTLIVFKDGQPVDKVVG 92
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
I S++ F + A D+ V++ + A+WC C +KP L+ Y + F VDVN
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVND 61
Query: 146 VPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYL--VINEV 187
+ + V MPT Q +K G+K E G +K L INE+
Sbjct: 62 C-QDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINEL 104
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLA-ADYHPRLRFYNVDVN 144
I S QF +V D+ V+I + A+WC C + P EK++ ++ FY VDV+
Sbjct: 20 ISSYDQFKQVTGG----DKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVD 75
Query: 145 AVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYL 182
++ G+ MPT +K+G+K V+G S L
Sbjct: 76 E-QSQIAQEVGIRAMPTFVFFKNGQKIDTVVGADPSKL 112
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
I S++ +D +A+ ++ + +++ + A+WC C + P E L+ DY ++ F V
Sbjct: 7 IDSKAAWDAQLAKGKEEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKV-DVD 65
Query: 146 VPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYL 182
+ AG+ MPT ++KDG K +++G + L
Sbjct: 66 AVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKL 102
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
I S++ F + A D+ V++ + A+WC C +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDD 61
Query: 146 VPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYL--VINEV 187
+ + + V MPT Q +K G+K E G +K L INE+
Sbjct: 62 C-QDVASESEVKSMPTFQFFKKGQKVGEFSGANKEKLEATINEL 104
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
I S++ F + A D+ V++ + A+WC C +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDD 61
Query: 146 VPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYL--VINEV 187
+ + V MPT Q +K G+K E G +K L INE+
Sbjct: 62 C-QDVASECEVKSMPTFQFFKKGQKVGEFSGANKEKLEATINEL 104
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
+++ FD + QL + W A+ C C + P LE+LAADY + +DV+ P
Sbjct: 9 TDADFDSKVESGVQL----VDFW-ATACGPCKMIAPVLEELAADYEGKADILKLDVDENP 63
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
A+ VM +PT+ ++KDG+ +V+G
Sbjct: 64 ST-AAKYEVMSIPTLIVFKDGQPVDKVVG 91
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
I S++ +D +A+ ++ + +++ + A+WC C + P E L+ DY ++ F V
Sbjct: 7 IDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKV-DVD 65
Query: 146 VPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYL 182
+ AG+ MPT ++KDG K +++G + L
Sbjct: 66 AVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKL 102
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARA-GVMKMPTIQL 164
V++ + A+WC C + P LE++A + L +DV+ P AR V+ +PT+ L
Sbjct: 28 VLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPE--TARNFQVVSIPTLIL 85
Query: 165 WKDGKKQAEVIGGHKSYLVINEVREMIGNEN 195
+KDG+ ++G ++ E+ +++ N N
Sbjct: 86 FKDGQPVKRIVGAKGKAALLRELSDVVPNLN 116
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
I S++ F + A D+ V++ + A+WC C +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDD 61
Query: 146 VPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYL--VINEV 187
+ + V MPT Q +K G+K E G +K L INE+
Sbjct: 62 C-QDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINEL 104
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
I S++ F + A D+ V++ + A+WC C +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDD 61
Query: 146 VPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYL--VINEV 187
+ + A V PT Q +K G+K E G +K L INE+
Sbjct: 62 -AQDVASEAEVKATPTFQFFKKGQKVGEFSGANKEKLEATINEL 104
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARA-GVMKMPTIQL 164
V++ + A+WC C + P LE++A + L +DV+ P AR V+ +PT+ L
Sbjct: 33 VLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPE--TARNFQVVSIPTLIL 90
Query: 165 WKDGKKQAEVIGGHKSYLVINEVREMIGNEN 195
+KDG+ ++G ++ E+ +++ N N
Sbjct: 91 FKDGQPVKRIVGAKGKAALLRELSDVVPNLN 121
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
I S++ F + A D+ V++ + A+WC C +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDD 61
Query: 146 VPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYL--VINEV 187
+ + V MPT Q +K G+K E G +K L INE+
Sbjct: 62 C-QDVASEXEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINEL 104
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWK 166
++ + A WC C + P LE+LA D+ RL+ V+V+ P L AR GV +PT+ L++
Sbjct: 54 LVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHP-GLAARYGVRSVPTLVLFR 112
Query: 167 DGKKQAEVIGGHKSYLVINEVREMI 191
G A +G ++ +R +
Sbjct: 113 RGAPVATWVGASPRRVLEERLRPYL 137
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ F V+ E+ V++ + A WC C + P ++++A +Y +L+ ++ + P
Sbjct: 7 NDDTFKNVVLESSV---PVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESP 63
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYLVINEVREMI 191
+ + + G+ +PTI ++K GKK +IG ++ V + +
Sbjct: 64 N-VASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 106
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 100 QQLDES------VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVAR 153
Q DE+ V++ + A WC C + P LE++A +Y +L +DV+ P K R
Sbjct: 10 QNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENP-KTAXR 68
Query: 154 AGVMKMPTIQLWKDGKKQAEVIGGH 178
V +PT+ L+KDG+ ++G
Sbjct: 69 YRVXSIPTVILFKDGQPVEVLVGAQ 93
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 100 QQLDES------VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVAR 153
Q DE+ V++ + A WC C + P LE++A +Y +L +DV+ P K R
Sbjct: 9 QNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENP-KTAXR 67
Query: 154 AGVMKMPTIQLWKDGKKQAEVIGGH 178
V +PT+ L+KDG+ ++G
Sbjct: 68 YRVXSIPTVILFKDGQPVEVLVGAQ 92
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 93 DRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVA 152
D +A Q D+ V++ + A+WC C + P LE+ A + ++ ++V+ P +
Sbjct: 7 DANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET-TS 65
Query: 153 RAGVMKMPTIQLWKDGKKQAEVIG 176
+ G+M +PT+ L+K G+ ++IG
Sbjct: 66 QFGIMSIPTLILFKGGRPVKQLIG 89
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 94 RVIAEAQQLDESV--------IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
RV+A A L++ + ++ + A WC C + PK+E LA + P + F VDV+
Sbjct: 2 RVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEI-PEVEFAKVDVDQ 60
Query: 146 VPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYL 182
+ A+ V MPT KDGK+ G +++ L
Sbjct: 61 -NEEAAAKYSVTAMPTFVFIKDGKEVDRFSGANETKL 96
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 98 EAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM 157
E +Q + +II++ SWC+ C +KP E++A+ +RF +D K +A +
Sbjct: 12 EVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDA-EKTMAELNIR 70
Query: 158 KMPTIQLWKDGKKQAEVIGG 177
+P++ L+ DG + EV G
Sbjct: 71 TLPSLALFVDGMIR-EVFSG 89
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ FD + +A D ++++ + A WC C + P L+++A DY +L ++++ P
Sbjct: 8 TDDSFDTDVLKA---DGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNP 64
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
+ G+ +PT+ L+K+G+ A +G
Sbjct: 65 GT-APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 93 DRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVA 152
D +A Q D+ V++ + A+WC C + P LE+ A + ++ ++V+ P +
Sbjct: 7 DANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET-TS 65
Query: 153 RAGVMKMPTIQLWKDGKKQAEVIG 176
+ G+M +PT+ L+K G+ ++IG
Sbjct: 66 QFGIMSIPTLILFKGGEPVKQLIG 89
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 93 DRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVA 152
D +A Q D V++ + A+WC C + P LE+ A + ++ ++V+ P +
Sbjct: 7 DANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET-TS 65
Query: 153 RAGVMKMPTIQLWKDGKKQAEVIG 176
+ G+M +PT+ L+K G+ ++IG
Sbjct: 66 QFGIMSIPTLILFKGGRPVKQLIG 89
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
+E FD + +A D ++++ + A WC C + P L+++A +Y +L ++++ P
Sbjct: 8 TEDSFDTDVLKA---DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
+ G+ +PT+ L+K+G+ A +G
Sbjct: 65 GT-APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ FD + +A D ++++ + A WC C + P LE++A +Y +L ++++ P
Sbjct: 8 TDDSFDTDVLKA---DGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNP 64
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
+ G+ +PT+ L+K+G+ A +G
Sbjct: 65 GT-APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 93 DRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVA 152
D +A Q D V++ + A+WC C + P LE+ A + ++ ++V+ P +
Sbjct: 7 DANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET-TS 65
Query: 153 RAGVMKMPTIQLWKDGKKQAEVIG 176
+ G+M +PT+ L+K G+ ++IG
Sbjct: 66 QFGIMSIPTLILFKGGEPVKQLIG 89
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
I S++ F + A D+ V++ + A+WC C +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDD 61
Query: 146 VPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYL--VINEV 187
+ + V PT Q +K G+K E G +K L INE+
Sbjct: 62 C-QDVASECEVKCTPTFQFFKKGQKVGEFSGANKEKLEATINEL 104
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
I S++ F + A D+ V++ + A+WC +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPSKMIKPFFHSLSEKY-SNVIFLEVDVDD 61
Query: 146 VPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYL--VINEV 187
+ + + V MPT Q +K G+K E G +K L INE+
Sbjct: 62 -SQDVASESEVKSMPTFQFFKKGQKVGEFSGANKEKLEATINEL 104
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
I S++ F + A D+ V++ + A+WC +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPSKMIKPFFHSLSEKY-SNVIFLEVDVDD 61
Query: 146 VPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYL--VINEV 187
+ + V +MPT Q +K G+K E G +K L INE+
Sbjct: 62 C-QDVASECEVKRMPTFQFFKKGQKVGEFSGANKEKLEATINEL 104
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 87 GSESQFDRVIAEAQQLDES----VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
GS Q + A + LD + V++ + A+WC +KP L+ Y + F VD
Sbjct: 11 GSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKY-SNVIFLEVD 69
Query: 143 VNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYL--VINEV 187
V+ + + V MPT Q +K G+K E G +K L INE+
Sbjct: 70 VDDC-QDVASECEVKSMPTFQFFKKGQKVGEFSGANKEKLEATINEL 115
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ FD + +A D ++++ + A WC C + P L+++A +Y +L ++++ P
Sbjct: 8 TDDSFDTDVLKA---DGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNP 64
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
+ G+ +PT+ L+K+G+ A +G
Sbjct: 65 GT-APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ FD + +A D ++++ + A WC C + P L+++A +Y +L ++++ P
Sbjct: 8 TDDSFDTDVLKA---DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
+ G+ +PT+ L+K+G+ A +G
Sbjct: 65 GT-APKYGIRSIPTLLLFKNGEVAATKVG 92
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ FD + +A D ++++ + A WC C + P L+++A +Y +L ++++ P
Sbjct: 8 TDDSFDTDVLKA---DGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
+ G+ +PT+ L+K+G+ A +G
Sbjct: 65 GT-APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ FD + +A D ++++ + A WC C + P L+++A +Y +L ++++ P
Sbjct: 8 TDDSFDTDVLKA---DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
+ G+ +PT+ L+K+G+ A +G
Sbjct: 65 GT-APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ FD + +A D ++++ + A WC C + P L+++A +Y +L ++++ P
Sbjct: 8 TDDSFDTDVLKA---DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
+ G+ +PT+ L+K+G+ A +G
Sbjct: 65 GT-APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ FD + +A D ++++ + A WC C + P L+++A +Y +L ++++ P
Sbjct: 8 TDDSFDTDVLKA---DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
+ G+ +PT+ L+K+G+ A +G
Sbjct: 65 GT-APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ FD + +A D ++++ + A WC C + P L+++A +Y +L ++++ P
Sbjct: 8 TDESFDTDVLKA---DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
+ G+ +PT+ L+K+G+ A +G
Sbjct: 65 GT-APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ FD + +A D ++++ + A WC C + P L+++A +Y +L ++++ P
Sbjct: 8 TDDSFDTDVLKA---DGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
+ G+ +PT+ L+K+G+ A +G
Sbjct: 65 GT-APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ FD + +A D ++++ + A WC C + P L+++A +Y +L ++++ P
Sbjct: 8 TDDSFDTDVLKA---DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
+ G+ +PT+ L+K+G+ A +G
Sbjct: 65 GT-APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ FD + +A D ++++ + A WC C + P L+++A +Y +L ++++ P
Sbjct: 8 TDDSFDTDVLKA---DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
+ G+ +PT+ L+K+G+ A +G
Sbjct: 65 GT-APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ FD + +A D ++++ + A WC C + P L+++A +Y +L ++++ P
Sbjct: 18 TDDSFDTDVLKA---DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 74
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
+ G+ +PT+ L+K+G+ A +G
Sbjct: 75 GT-APKYGIRGIPTLLLFKNGEVAATKVG 102
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 15/102 (14%)
Query: 85 PIGS------ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRL-- 136
P+GS E+ FD IAE I + A WC C L P E+L+ P L
Sbjct: 2 PLGSTVLALTENNFDDTIAEGI-----TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAG 56
Query: 137 -RFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGG 177
+ VD A + ++ V PT+ L++ GKK +E GG
Sbjct: 57 VKIAEVDCTA-ERNICSKYSVRGYPTLLLFRGGKKVSEHSGG 97
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ FD + +A D ++++ + A WC C + P L+++A +Y +L ++++ P
Sbjct: 8 TDDSFDTDVLKA---DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
+ G+ +PT+ L+K+G+ A +G
Sbjct: 65 GT-APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ FD + +A D ++++ + A WC C + P L+ +A +Y +L ++++ P
Sbjct: 8 TDDSFDTDVLKA---DGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNP 64
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
+ G+ +PT+ L+K+G+ A +G
Sbjct: 65 GT-APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ FD + +A D ++++ + A WC C + P L+++A +Y +L ++++ P
Sbjct: 8 TDDSFDTDVLKA---DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
+ G+ +PT+ L+K+G A +G
Sbjct: 65 GT-APKYGIRGIPTLLLFKNGDVAATKVG 92
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRL---RFYNVDVN 144
+E+ FD IAE I + A WC C L P E+L+ P L + VD
Sbjct: 13 TENNFDDTIAEGI-----TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT 67
Query: 145 AVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGG 177
A + ++ V PT+ L++ GKK +E GG
Sbjct: 68 A-ERNICSKYSVRGYPTLLLFRGGKKVSEHSGG 99
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLW 165
V++ + A WC C + P +++LA +Y ++ Y ++ + P + + + +PT+ +
Sbjct: 21 VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG-IATQYNIRSIPTVLFF 79
Query: 166 KDGKKQAEVIGG 177
K+G+++ +IG
Sbjct: 80 KNGERKESIIGA 91
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARA-GVMKMPTIQL 164
V++ + A+WC + P LE++A + L +DV+ P AR V+ +PT+ L
Sbjct: 30 VLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVDTNPE--TARNFQVVSIPTLIL 87
Query: 165 WKDGKKQAEVIGGHKSYLVINEVREMIGNEN 195
+KDG+ ++G ++ E+ +++ N N
Sbjct: 88 FKDGQPVKRIVGAKGKAALLRELSDVVPNLN 118
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ FD + +A D ++++ + A WC C + P L+++A +Y +L ++++ P
Sbjct: 9 TDDSFDTDVLKA---DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 65
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
+ G+ PT+ L+K+G+ A +G
Sbjct: 66 GT-APKYGIRGTPTLLLFKNGEVAATKVG 93
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
I S++ F + A D+ V++ + A+WC +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPAKMIKPFFHSLSEKY-SNVIFLEVDVDD 61
Query: 146 VPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYL--VINEV 187
+ + A V PT Q +K G+K E G +K L INE+
Sbjct: 62 A-QDVASEAEVKATPTFQFFKKGQKVGEFSGANKEKLEATINEL 104
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLW 165
V++ + A WC C + P +++LA +Y ++ Y ++ + P + + + +PT+ +
Sbjct: 20 VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG-IATQYNIRSIPTVLFF 78
Query: 166 KDGKKQAEVIGG 177
K+G+++ +IG
Sbjct: 79 KNGERKESIIGA 90
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRL---RFYNVDVN 144
+E+ FD IAE I + A WC C L P E+L+ P L + VD
Sbjct: 6 TENNFDDTIAEGI-----TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT 60
Query: 145 AVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGG 177
A + ++ V PT+ L++ GKK +E GG
Sbjct: 61 A-ERNICSKYSVRGYPTLLLFRGGKKVSEHSGG 92
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ FD + +A D ++++ + A WC C + P L+++A +Y +L ++++ P
Sbjct: 8 TDDSFDTDVLKA---DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
+ G+ +PT+ L+K+G+ A +G
Sbjct: 65 GT-APKYGIRGIPTLLLFKNGEVAACKVG 92
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162
D ++++ + A WC C + P L+++A +Y +L ++++ P + G+ +PT+
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT-APKYGIRGIPTL 78
Query: 163 QLWKDGKKQAEVIG 176
L+K+G+ A +G
Sbjct: 79 LLFKNGEVAATKVG 92
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ FD + +A D ++++ + A WC C + P L+++A +Y +L ++++ P
Sbjct: 8 TDDSFDTDVLKA---DGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
+ G+ +PT+ L+K+G+ A +G
Sbjct: 65 GT-APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWC-RKCIYLKPKLEKLAADYHPRLRFYNVDVNAV 146
++ FD + +A D ++++ + A WC R C + P L+++A +Y +L ++++
Sbjct: 8 TDDSFDTDVLKA---DGAILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQN 64
Query: 147 PHKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
P + G+ +PT+ L+K+G+ A +G
Sbjct: 65 PGT-APKYGIRGIPTLLLFKNGEVAATKVG 93
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
+ S Q+ I EA + V+I + ASWC C + P LA + P F VDV+
Sbjct: 17 VHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKF-PNAVFLKVDVDE 75
Query: 146 VPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYL 182
+ + + V MPT K+G + V+G K L
Sbjct: 76 L-KPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEEL 111
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLW 165
V+ + + + C+ L P LE LAA YH + +D +A + A+ G+ +PT+ L+
Sbjct: 29 VLFYFWSERSQHCLQLTPVLESLAAQYHGQFILAKLDCDA-EQXIAAQFGLRAIPTVYLF 87
Query: 166 KDGK 169
++G+
Sbjct: 88 QNGQ 91
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMP 160
Q D +I + A WC C P + AA+ ++RF V+ A P L R + +P
Sbjct: 53 QDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEP-ALSTRFRIRSIP 111
Query: 161 TIQLWKDGK 169
TI L+++GK
Sbjct: 112 TIXLYRNGK 120
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV 146
S QF +++E + + + W A WC C ++ +EK+A ++ P ++F VD +
Sbjct: 26 SVEQFRNIMSE-----DILTVAWFTAVWCGPCKTIERPMEKIAYEF-PTVKFAKVDADN- 78
Query: 147 PHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYL 182
++V++ V+++PT + + GK VIG + L
Sbjct: 79 NSEIVSKCRVLQLPTFIIARSGKMLGHVIGANPGML 114
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162
D+ V++ WC C + PK EKLA +Y + F +D N L G+ +PT
Sbjct: 25 DKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVI-FLKLDCNQENKTLAKELGIRVVPTF 83
Query: 163 QLWKDGKKQAEVIGGHKSYLV 183
++ K+ EV G L+
Sbjct: 84 KILKENSVVGEVTGAKYDKLL 104
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162
D+ I+ + A WC C + P LE+L+ +Y ++ Y V+V+ P +L G+ +PTI
Sbjct: 51 DKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEP-ELARDFGIQSIPTI 109
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
I S++ F + A D+ V++ + A+WC C +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVDVDD 61
Query: 146 VPHKLVARAGVMKMPTIQLWKDGKKQAEVIGG 177
+ + G+ +PT+ L+K+G+ A +G
Sbjct: 62 A-QDVAPKYGIRGIPTLLLFKNGEVAATKVGA 92
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ FD + +A D ++++ + A WC C + L+++A +Y +L ++++ P
Sbjct: 8 TDDSFDTDVLKA---DGAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQNP 64
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
+ G+ +PT+ L+K+G+ A +G
Sbjct: 65 GT-APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162
D+ I+ + A WC C + P LE+L+ +Y ++ Y V+V+ P +L G+ +PTI
Sbjct: 51 DKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEP-ELARDFGIQGIPTI 109
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162
D+ V++ WC C + PK EKLA +Y + F +D N L G+ +PT
Sbjct: 37 DKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVI-FLKLDCNQENKTLAKELGIRVVPTF 95
Query: 163 QLWKDGKKQAEVIGGHKSYLV 183
++ K+ EV G L+
Sbjct: 96 KILKENSVVGEVTGAKYDKLL 116
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 99 AQQLDESVIIV-WMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM 157
+ + E V++ + A WC C + P LE+L + +L+ +DV+ + + GVM
Sbjct: 12 SAETSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDE-NQETAGKYGVM 70
Query: 158 KMPTIQLWKDGK 169
+PT+ + KDG+
Sbjct: 71 SIPTLLVLKDGE 82
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ FD + +A D ++++ + A WC + P L+++A +Y +L ++++ P
Sbjct: 28 TDDSFDTDVLKA---DGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNP 84
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
+ G+ +PT+ L+K+G+ A +G
Sbjct: 85 GT-APKYGIRGIPTLLLFKNGEVAATKVG 112
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 18/98 (18%)
Query: 85 PIGSESQFDRVIAEAQQ---LDES--VIIVWMASWCRKCIYLKPKLEKLAA-----DYHP 134
P+GSE V+A+ LD++ V+I + A WC C L PK E+L A ++
Sbjct: 2 PLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKD 61
Query: 135 RLRFYNVDVNA--VPHKLVARAGVMKMPTIQLWKDGKK 170
R+ VD A VP + + PTI+L+ G K
Sbjct: 62 RVVIAKVDATANDVPDE------IQGFPTIKLYPAGAK 93
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ FD + +A D ++++ + A WC + P L+++A +Y +L ++++ P
Sbjct: 8 TDDSFDTDVLKA---DGAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
+ G+ +PT+ L+K+G+ A +G
Sbjct: 65 GT-APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARA-GVMKMPTIQL 164
+++ + ASWC C + P +LA + P + F VDV+ + K VA V MPT
Sbjct: 29 IVVDFTASWCPPCKMIAPIFAELAKKF-PNVTFLKVDVDEL--KAVAEEWNVEAMPTFIF 85
Query: 165 WKDGKKQAEVIGGHKSYL 182
KDGK + +G K L
Sbjct: 86 LKDGKLVDKTVGADKDGL 103
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 100 QQLDES---VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGV 156
Q+ +ES V++ + ASWC C ++ P LA P + F VD + + + + +
Sbjct: 32 QKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKL-PNVLFLKVDTDEL-KSVASDWAI 89
Query: 157 MKMPTIQLWKDGKKQAEVIGGHKSYL 182
MPT K+GK +V+G K L
Sbjct: 90 QAMPTFMFLKEGKILDKVVGAKKDEL 115
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLW 165
V++ + A WC + P +++LA +Y ++ Y ++ + P + + + +PT+ +
Sbjct: 21 VMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEAPG-IATQYNIRSIPTVLFF 79
Query: 166 KDGKKQAEVIGG 177
K+G+++ +IG
Sbjct: 80 KNGERKESIIGA 91
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ FD + +A D ++++ + A WC + P L+++A +Y +L ++++ P
Sbjct: 8 TDDSFDTDVLKA---DGAILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 148 HKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
+ G+ +PT+ L+K+G+ A +G
Sbjct: 65 GT-APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLA---ADYHPRLRFYNVDVN 144
+++ FD +A+ ++V++ + A WC C P+ EK+A D P + +D
Sbjct: 21 NDANFDNFVADK----DTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDAT 76
Query: 145 AVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYLVINEVREM 190
+ L +R V PTI++ K G + + G ++ +VRE+
Sbjct: 77 SA-SVLASRFDVSGYPTIKILKKG-QAVDYEGSRTQEEIVAKVREV 120
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
I S++ F + A D+ V++ + A+WC C +KP L+ Y + +
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVI--FLEVDVD 60
Query: 146 VPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYL--VINEV 187
+ + V MPT Q +K G+K E G +K L INE+
Sbjct: 61 DXQDVASEXEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINEL 104
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 98 EAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM 157
E + D+ V++ + A WC C + P +E+LA +Y +++ V+V+ P+ A+ G+
Sbjct: 14 EVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNT-AAQYGIR 72
Query: 158 KMPTIQLWKDGKKQAEVIGGH 178
+PT+ L+K+G+ ++G
Sbjct: 73 SIPTLLLFKNGQVVDRLVGAQ 93
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLW 165
V++ + A+WC C + PKL +L+ + + VDV+ + + MPT
Sbjct: 23 VVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDEC-EDIAMEYNISSMPTFVFL 81
Query: 166 KDGKKQAEVIGGHKSYL 182
K+G K E G + L
Sbjct: 82 KNGVKVEEFAGANAKRL 98
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAA---DYHPRLRFYNVDVN 144
++ FD +A+ ++V++ + A WC C P+ EK+A+ D P + +D
Sbjct: 23 NDGNFDNFVADK----DTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDAT 78
Query: 145 AVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYLVINEVREM 190
+ L ++ V PTI++ K G + + G ++ +VRE+
Sbjct: 79 SA-SMLASKFDVSGYPTIKILKKG-QAVDYDGSRTQEEIVAKVREV 122
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLW 165
V++ + A+WC C + PKL +L+ + + VDV+ + + MPT
Sbjct: 28 VVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDEC-EDIAMEYNISSMPTFVFL 86
Query: 166 KDGKKQAEVIGGHKSYL 182
K+G K E G + L
Sbjct: 87 KNGVKVEEFAGANAKRL 103
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
I S++ F + A D+ V++ + A+W +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWSGPSKMIKPFFHSLSEKY-SNVIFLEVDVDD 61
Query: 146 VPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYL--VINEV 187
+ + V MPT Q +K G+K E G +K L INE+
Sbjct: 62 C-QDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINEL 104
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLW 165
V++ + A WC C L P+LEK+ A H ++ VD++ L V +PT+
Sbjct: 34 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDD-HTDLAIEYEVSAVPTVLAM 92
Query: 166 KDGKKQAEVIG 176
K+G + +G
Sbjct: 93 KNGDVVDKFVG 103
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 100 QQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKM 159
Q ++ V++ + A+WC C + P ++L+ Y F VDV+ + + + + M
Sbjct: 30 QHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDA--IFVKVDVDKL-EETARKYNISAM 86
Query: 160 PTIQLWKDGKKQAEVIGGHKSYLVINEVREMI 191
PT K+G+K +V+G I +V +MI
Sbjct: 87 PTFIAIKNGEKVGDVVGAS-----IAKVEDMI 113
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
+ S Q+ I EA + V+I + ASWC + P LA + P F VDV+
Sbjct: 20 VHSLEQWTMQIEEANTAKKLVVIDFTASWCGPSRIMAPVFADLAKKF-PNAVFLKVDVDE 78
Query: 146 VPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYL 182
+ + + V MPT K+G + V+G K L
Sbjct: 79 L-KPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEEL 114
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 100 QQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKM 159
Q ++ V++ + A+WC C + P ++L+ Y F VDV+ + + + + M
Sbjct: 21 QHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDA--IFVKVDVDKL-EETARKYNISAM 77
Query: 160 PTIQLWKDGKKQAEVIGGHKSYLVINEVREMI 191
PT K+G+K +V+G I +V +MI
Sbjct: 78 PTFIAIKNGEKVGDVVGAS-----IAKVEDMI 104
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 99 AQQLDES----VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARA 154
+QL+E+ V+I + A+WC C + PKLE+L+ + F VDV+ +
Sbjct: 12 TKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQS-MSDVVFLKVDVDEC-EDIAQDN 69
Query: 155 GVMKMPTIQLWKDGKKQAEVIGGHKSYLV 183
+ MPT K+G+K + G + L+
Sbjct: 70 QIACMPTFLFMKNGQKLDSLSGANYDKLL 98
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162
D+ I+ + A WC C + P L++LA +Y ++ Y VD +L G+ +P+I
Sbjct: 38 DKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEK-EQELAGAFGIRSIPSI 96
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162
D+ V++ WC + PK EKLA +Y + F +D N L G+ +PT
Sbjct: 24 DKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVI-FLKLDCNQENKTLAKELGIRVVPTF 82
Query: 163 QLWKDGKKQAEVIGGHKSYLV 183
++ K+ EV G L+
Sbjct: 83 KILKENSVVGEVTGAKYDKLL 103
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 99 AQQLDESVIIV-WMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM 157
+ + E V++ + A WC + P LE+L + +L+ +DV+ + + GVM
Sbjct: 12 SAETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDE-NQETAGKYGVM 70
Query: 158 KMPTIQLWKDGK 169
+PT+ + KDG+
Sbjct: 71 SIPTLLVLKDGE 82
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 105 SVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQL 164
+ ++ + C C + P LE+L +Y FY VDV L R + +P I
Sbjct: 24 ACLVXFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEE-EKTLFQRFSLKGVPQILY 82
Query: 165 WKDGKKQAEVIG 176
+KDG+ + + G
Sbjct: 83 FKDGEYKGKXAG 94
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 52/114 (45%), Gaps = 16/114 (14%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWM----ASWCRKCIYLKPKLEKLAADYHP----RLRFY 139
++ FD+ + +++ VWM A WC C L+P+ A++ +++
Sbjct: 13 TDDSFDKNVLDSED-------VWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLA 65
Query: 140 NVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYLVINEVREMIGN 193
VD V L +R G+ PTI++++ G+ + GG +++ ++ +
Sbjct: 66 AVDAT-VNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSD 118
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 99 AQQLDESVIIV-WMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM 157
+ + E V++ + A WC + P LE+L + +L+ +DV+ + + GVM
Sbjct: 12 SAETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDE-NQETAGKYGVM 70
Query: 158 KMPTIQLWKDGK 169
+PT+ + KDG+
Sbjct: 71 SIPTLLVLKDGE 82
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLW 165
+++ + A WC C L P+ E A + VD A + + GV PT++++
Sbjct: 24 MLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTNT-CNKYGVSGYPTLKIF 82
Query: 166 KDGKKQAEVIGGHKSYLVINEVREMIG 192
+DG++ G + +++ +++ G
Sbjct: 83 RDGEEAGAYDGPRTADGIVSHLKKQAG 109
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 96 IAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP---RLRFYNVDVNAVPHKLVA 152
AEA + +++ + A WC C L P+ K A +R VD L
Sbjct: 17 FAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE-ESDLAQ 75
Query: 153 RAGVMKMPTIQLWKDGKKQA--EVIGGHKSYLVINEVREMIG 192
+ GV PTI+ +++G + E G ++ ++N +++ G
Sbjct: 76 QYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTG 117
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++++F+ + +A+Q V++ + ASWC C + P + A Y RL+ ++++ P
Sbjct: 13 TDAEFESEVLKAEQ---PVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNP 69
Query: 148 HKLVARAGVMKMPTIQLWK 166
V + V +P ++L K
Sbjct: 70 TT-VKKYKVEGVPALRLVK 87
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 16/101 (15%)
Query: 82 PLTPIGS-ESQFDRVIAEAQQLDES--------------VIIVWMASWCRKCIYLKPKLE 126
PLTP+ + + R+ + +L ++ +++ + A WC+ C +++
Sbjct: 6 PLTPLNRFDKYYLRMFKKVPRLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMD 65
Query: 127 KLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKD 167
KL Y R+ VD++ L + V +PTI L K+
Sbjct: 66 KLQKYYGKRIYLLKVDLDK-NESLARKFSVKSLPTIILLKN 105
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 49/103 (47%), Gaps = 18/103 (17%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRK--------------CIYLKPKLEKLAADYH 133
++ FD + +A D ++++ + A WC C + P L+++A +Y
Sbjct: 9 TDDSFDTDVLKA---DGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQ 65
Query: 134 PRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIG 176
+L ++++ P + G+ +PT+ L+K+G+ A +G
Sbjct: 66 GKLTVAKLNIDQNPGT-APKYGIRGIPTLLLFKNGEVAATKVG 107
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLW 165
+++ + A WC L P+ E A + VD A + + GV PT++++
Sbjct: 24 MLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTN-TCNKYGVSGYPTLKIF 82
Query: 166 KDGKKQAEVIGGHKSYLVINEVREMIG 192
+DG++ G + +++ +++ G
Sbjct: 83 RDGEEAGAYDGPRTADGIVSHLKKQAG 109
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 92 FDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL----EKLAADYHPRLRFYNVDVNAVP 147
FD ++ ++ V+I + A WC C L+PK EKL+ D + + + N VP
Sbjct: 362 FDEIV---NNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVP 418
Query: 148 HKLVARAGVMKMPTIQLWKDGKK 170
R PTI KK
Sbjct: 419 SPYEVRG----FPTIYFSPANKK 437
>pdb|3HA9|A Chain A, The 1.7a Crystal Structure Of A Thioredoxin-like Protein
From Aeropyrum Pernix
Length = 165
Score = 33.9 bits (76), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 88 SESQFDRVIAEAQQLDESVIIVW-MASWCRKCIYLKPKLEKLAADY 132
S + D + + V+I+W MA+WC C+Y+ L++L Y
Sbjct: 21 SLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKY 66
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 16/130 (12%)
Query: 33 RILSISSSNITKSVNFRGKIDNVIRVTKHEGSIKELNEDDDDDHAPVSIPLTPIGSESQF 92
R++ I +++ S +G + N + EG +K L+ED A + PL +E++
Sbjct: 208 RVVKIMGGSLSNSTVIKGMVFN----REPEGHVKSLSEDKKHKVAVFTCPLDIANTETKG 263
Query: 93 DRVIAEAQQL------DESVIIVWM---ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV 143
++ AQ++ +E I M A +CI + +LA Y R Y + V
Sbjct: 264 TVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGVGELALHYLNR---YGILV 320
Query: 144 NAVPHKLVAR 153
VP K R
Sbjct: 321 LKVPSKFELR 330
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Query: 91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL----EKLAADYHPRLRFYNVDVNAV 146
FD ++ ++ V+I + A WC C L+PK EKL+ D + + + N V
Sbjct: 36 NFDEIV---NNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDV 92
Query: 147 PHKLVARAGVMKMPTIQLWKDGKK 170
P R PTI KK
Sbjct: 93 PSPYEVRG----FPTIYFSPANKK 112
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 79 VSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRF 138
+ I L GS ++V + Q + S++I + A WC+ C +K + Y+ L
Sbjct: 21 IYIELKNTGS---LNQVFSSTQ--NSSIVIKFGAVWCKPCNKIKEYFKNQLNYYYVTLV- 74
Query: 139 YNVDVNAVPHKLVARAGVMKMPTIQLW 165
++DV+ P KL + + +PT + +
Sbjct: 75 -DIDVDIHP-KLNDQHNIKALPTFEFY 99
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLR--FYNVDVNAVPHKLVARAGVMKM 159
L+ +I + A WC C L+P+ E A++ L VDV P L R + +
Sbjct: 21 LEGDWMIEFYAPWCPACQNLQPEWESF-AEWGEDLEVNIAKVDVTEQP-GLSGRFIINAL 78
Query: 160 PTIQLWKDGK 169
PTI KDG+
Sbjct: 79 PTIYHCKDGE 88
>pdb|1RW3|A Chain A, The Crystal Structure Of The Monomeric Reverse
Transcriptase From Moloney Murine Leukemia Virus
Length = 455
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 92 FDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRF 138
F+ + E Q + V+ + W R YL KL+ +AA + P LR
Sbjct: 347 FELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRM 393
>pdb|1TD6|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Mp506MPN330 (GI: 1674200)FROM MYCOPLASMA PNEUMONIAE
Length = 306
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 18/114 (15%)
Query: 52 IDNVIRVTKHEGSIKELNEDDDDDHAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWM 111
++++ + KH S KEL E +D H LT QFD+V+ +Q D
Sbjct: 21 VNHLSALKKHFASYKELREAFNDYHKHNGDELTTFFLH-QFDKVMELVKQKD----FKTA 75
Query: 112 ASWCRKCIYLKPKLEKLAADYHPR--LRFYNVDVNAVPHKLVAR--AGVMKMPT 161
S C E+LAA Y P+ + F+ + V H L+ + A + +P
Sbjct: 76 QSRCE---------EELAAPYLPKPLVSFFQSLLQLVNHDLLEQQNAALASLPA 120
>pdb|4HKQ|A Chain A, Protein Dna Complex
Length = 681
Score = 28.9 bits (63), Expect = 1.8, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 92 FDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLR 137
F+ + E Q + V+ + W R YL KL+ +AA + P LR
Sbjct: 376 FELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLR 421
>pdb|3EMX|A Chain A, Crystal Structure Of Thioredoxin From Aeropyrum Pernix
pdb|3EMX|B Chain B, Crystal Structure Of Thioredoxin From Aeropyrum Pernix
Length = 135
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 153 RAGVMKMPTIQLWKDGKKQAEVIGGHKSYLVINEVREMIGNEN 195
+AGV PT+ +K+G+ +++G L + + RE+ G E
Sbjct: 87 KAGVEGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREIYGGEG 129
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 105 SVIIVWMASWCRKCIYLKPKLEKLAADY--HPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162
+V + + A WC C L P +KL Y H + +D A V V PT+
Sbjct: 269 NVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTA---NEVEAVKVHSFPTL 325
Query: 163 QLW 165
+ +
Sbjct: 326 KFF 328
>pdb|1MDO|A Chain A, Crystal Structure Of Arnb Aminotransferase With Pyridomine
5' Phosphate
Length = 393
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 79 VSIPLTPIGSESQFDRVIAEAQQL 102
S+PL P +ES FDRVI Q+
Sbjct: 359 CSLPLFPDXTESDFDRVITALHQI 382
>pdb|2B4G|A Chain A, Dihydroorotate Dehydrogenase
pdb|2B4G|B Chain B, Dihydroorotate Dehydrogenase
pdb|2B4G|C Chain C, Dihydroorotate Dehydrogenase
pdb|2B4G|D Chain D, Dihydroorotate Dehydrogenase
Length = 317
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 24 QSRDLFVPPRILSISSSNITKSVNFRGKIDNVIRVTKHEGSIKELN 69
Q+ D P LS+S ++ +SV + ++ +TK +G+I ELN
Sbjct: 90 QTHDYSRKPLFLSMSGLSVEESVEM---VKKLVPITKEKGTILELN 132
>pdb|2IV1|A Chain A, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|B Chain B, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|C Chain C, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|D Chain D, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|E Chain E, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|F Chain F, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|G Chain G, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|H Chain H, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|I Chain I, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|J Chain J, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
Length = 156
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 94 RVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVAR 153
R++ LDE I++ R CI + + ++ L+ Y + A+ H+ +
Sbjct: 59 RLVGAKLDLDEDSILLLQMIPLRGCIDDRIPTDPTMYQFYEMLQVYGTTLKALVHE---K 115
Query: 154 AGVMKMPTIQLWKDGKKQAEVIGGHKSYLVIN 185
G + I D KK A+ GG ++ + ++
Sbjct: 116 FGDGIISAINFKLDVKKVADPEGGERAVITLD 147
>pdb|2H30|A Chain A, Crystal Structure Of The N-Terminal Domain Of Pilb From
Neisseria Gonorrhoeae
Length = 164
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 75 DHAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAAD 131
D ++P T ++ +R + + D+ +I + ASWC C+ + EK A D
Sbjct: 10 DAGTATVPHTXSTXKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQD 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,883,022
Number of Sequences: 62578
Number of extensions: 224910
Number of successful extensions: 712
Number of sequences better than 100.0: 133
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 589
Number of HSP's gapped (non-prelim): 134
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)