Query 029191
Match_columns 197
No_of_seqs 233 out of 1983
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 08:57:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029191.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029191hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 99.9 2.2E-27 4.7E-32 175.1 12.0 106 83-192 44-149 (150)
2 PHA02278 thioredoxin-like prot 99.9 2.3E-24 5.1E-29 152.5 13.3 93 87-183 2-97 (103)
3 cd02954 DIM1 Dim1 family; Dim1 99.9 2E-24 4.4E-29 154.5 11.8 89 89-180 2-90 (114)
4 KOG0907 Thioredoxin [Posttrans 99.9 2.4E-24 5.3E-29 152.8 11.7 99 89-194 7-105 (106)
5 cd03006 PDI_a_EFP1_N PDIa fami 99.9 5.6E-24 1.2E-28 152.9 12.2 100 83-185 11-111 (113)
6 PF00085 Thioredoxin: Thioredo 99.9 1.9E-23 4.2E-28 146.4 13.9 99 88-194 5-103 (103)
7 cd03065 PDI_b_Calsequestrin_N 99.9 1.2E-23 2.7E-28 152.3 13.1 104 83-192 11-120 (120)
8 cd02985 TRX_CDSP32 TRX family, 99.9 2.3E-23 5E-28 147.4 14.0 90 88-180 2-93 (103)
9 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 1.3E-23 2.8E-28 147.9 11.9 96 83-184 3-98 (101)
10 PLN00410 U5 snRNP protein, DIM 99.9 3E-23 6.4E-28 153.9 14.0 108 82-192 4-121 (142)
11 cd02948 TRX_NDPK TRX domain, T 99.9 5.1E-23 1.1E-27 145.4 13.9 96 85-187 3-99 (102)
12 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 3E-23 6.5E-28 146.6 11.8 97 84-185 4-102 (104)
13 COG3118 Thioredoxin domain-con 99.9 2.5E-23 5.4E-28 168.6 12.4 107 83-192 25-131 (304)
14 cd02956 ybbN ybbN protein fami 99.9 9.2E-23 2E-27 142.0 12.5 93 91-186 2-94 (96)
15 cd02999 PDI_a_ERp44_like PDIa 99.9 1.3E-22 2.9E-27 142.9 11.5 92 90-186 7-99 (100)
16 cd02989 Phd_like_TxnDC9 Phosdu 99.9 3.6E-22 7.8E-27 143.7 12.7 93 81-179 4-96 (113)
17 cd02963 TRX_DnaJ TRX domain, D 99.9 2.4E-22 5.2E-27 144.1 11.7 99 88-188 10-109 (111)
18 cd02996 PDI_a_ERp44 PDIa famil 99.9 4.2E-22 9.2E-27 141.8 12.2 98 83-186 3-107 (108)
19 PRK09381 trxA thioredoxin; Pro 99.9 1.1E-21 2.5E-26 139.7 14.2 104 83-191 5-108 (109)
20 PRK10996 thioredoxin 2; Provis 99.9 1.8E-21 4E-26 144.9 14.3 98 88-190 41-138 (139)
21 KOG0908 Thioredoxin-like prote 99.9 2.8E-22 6.1E-27 158.1 9.4 104 82-194 2-105 (288)
22 cd02965 HyaE HyaE family; HyaE 99.9 1.3E-21 2.8E-26 139.3 11.7 91 89-184 17-109 (111)
23 cd03002 PDI_a_MPD1_like PDI fa 99.9 2.4E-21 5.3E-26 137.7 12.0 99 84-187 3-108 (109)
24 cd03005 PDI_a_ERp46 PDIa famil 99.9 2.9E-21 6.2E-26 135.5 12.0 91 89-185 7-100 (102)
25 cd02994 PDI_a_TMX PDIa family, 99.9 4.4E-21 9.6E-26 134.8 12.8 96 83-187 3-99 (101)
26 KOG0190 Protein disulfide isom 99.9 3.3E-22 7.2E-27 173.1 8.3 129 54-195 340-473 (493)
27 cd02986 DLP Dim1 family, Dim1- 99.9 3.6E-21 7.8E-26 137.0 12.2 85 89-176 2-86 (114)
28 cd02957 Phd_like Phosducin (Ph 99.9 2.9E-21 6.2E-26 138.9 11.0 92 82-178 5-96 (113)
29 cd02984 TRX_PICOT TRX domain, 99.9 1E-20 2.3E-25 131.7 13.1 89 88-179 1-89 (97)
30 cd02950 TxlA TRX-like protein 99.9 1.1E-20 2.3E-25 141.3 13.7 102 89-194 10-113 (142)
31 PTZ00051 thioredoxin; Provisio 99.9 7.3E-21 1.6E-25 132.8 12.0 91 83-179 2-92 (98)
32 TIGR01068 thioredoxin thioredo 99.9 1.9E-20 4.2E-25 130.5 13.4 98 89-190 3-100 (101)
33 cd03001 PDI_a_P5 PDIa family, 99.9 1.3E-20 2.9E-25 132.3 12.6 100 83-187 2-102 (103)
34 cd02997 PDI_a_PDIR PDIa family 99.9 1.7E-20 3.6E-25 132.0 12.3 98 83-186 2-103 (104)
35 cd02987 Phd_like_Phd Phosducin 99.8 1.8E-20 3.8E-25 144.7 13.3 112 79-194 60-174 (175)
36 PTZ00443 Thioredoxin domain-co 99.8 2.1E-20 4.5E-25 149.1 13.9 109 83-193 32-141 (224)
37 cd02962 TMX2 TMX2 family; comp 99.8 3.6E-20 7.7E-25 139.6 14.0 91 82-176 29-126 (152)
38 TIGR01126 pdi_dom protein disu 99.8 2.4E-20 5.3E-25 130.5 11.8 95 89-188 3-99 (102)
39 cd02949 TRX_NTR TRX domain, no 99.8 1.1E-19 2.3E-24 127.1 12.9 92 92-187 5-96 (97)
40 cd02953 DsbDgamma DsbD gamma f 99.8 2.2E-20 4.8E-25 132.0 9.6 94 90-187 2-103 (104)
41 cd03000 PDI_a_TMX3 PDIa family 99.8 8.9E-20 1.9E-24 129.0 12.1 94 89-189 6-102 (104)
42 KOG0190 Protein disulfide isom 99.8 2.3E-20 5E-25 161.8 9.9 102 83-190 27-131 (493)
43 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 9.7E-20 2.1E-24 127.9 11.3 97 84-186 3-103 (104)
44 cd02993 PDI_a_APS_reductase PD 99.8 1.6E-19 3.4E-24 129.0 12.0 101 83-185 3-107 (109)
45 cd02975 PfPDO_like_N Pyrococcu 99.8 1.9E-19 4.2E-24 129.5 12.1 95 92-192 15-111 (113)
46 cd02998 PDI_a_ERp38 PDIa famil 99.8 1.5E-19 3.2E-24 127.1 10.7 98 84-186 3-104 (105)
47 cd02961 PDI_a_family Protein D 99.8 4E-19 8.7E-24 123.1 10.6 92 89-185 5-99 (101)
48 cd02951 SoxW SoxW family; SoxW 99.8 1.4E-18 3.1E-23 126.7 12.5 101 90-194 4-122 (125)
49 cd03007 PDI_a_ERp29_N PDIa fam 99.8 8E-19 1.7E-23 126.0 9.4 93 88-189 7-114 (116)
50 TIGR01295 PedC_BrcD bacterioci 99.8 5.4E-18 1.2E-22 123.5 13.1 94 89-192 13-121 (122)
51 cd02988 Phd_like_VIAF Phosduci 99.8 2.5E-18 5.5E-23 134.4 11.9 108 79-193 80-190 (192)
52 cd02947 TRX_family TRX family; 99.8 5.5E-18 1.2E-22 115.2 11.9 90 91-186 2-91 (93)
53 PTZ00102 disulphide isomerase; 99.8 4.1E-18 8.9E-23 149.8 14.0 134 52-192 330-466 (477)
54 TIGR00424 APS_reduc 5'-adenyly 99.8 9.5E-18 2E-22 146.0 12.8 106 82-189 352-461 (463)
55 PTZ00102 disulphide isomerase; 99.8 1.2E-17 2.5E-22 146.9 13.6 103 83-192 34-139 (477)
56 cd02992 PDI_a_QSOX PDIa family 99.8 1.1E-17 2.4E-22 120.5 11.0 84 83-170 3-90 (114)
57 TIGR01130 ER_PDI_fam protein d 99.8 1.1E-17 2.3E-22 146.1 13.1 104 83-192 3-110 (462)
58 cd02952 TRP14_like Human TRX-r 99.7 1.4E-17 3E-22 120.5 10.5 85 85-171 5-103 (119)
59 PLN02309 5'-adenylylsulfate re 99.7 3.3E-17 7.2E-22 142.5 13.9 106 82-190 346-456 (457)
60 PTZ00062 glutaredoxin; Provisi 99.7 3.7E-17 8E-22 128.6 11.1 89 87-189 4-92 (204)
61 cd02959 ERp19 Endoplasmic reti 99.7 1.2E-17 2.5E-22 120.9 7.6 100 91-190 7-112 (117)
62 KOG4277 Uncharacterized conser 99.7 1.8E-17 4E-22 134.4 7.9 86 101-188 41-129 (468)
63 TIGR00411 redox_disulf_1 small 99.7 2E-16 4.4E-21 106.6 10.9 80 106-190 2-81 (82)
64 PRK00293 dipZ thiol:disulfide 99.7 2.1E-16 4.6E-21 141.9 13.6 109 80-189 451-568 (571)
65 TIGR01130 ER_PDI_fam protein d 99.7 2E-16 4.3E-21 138.1 13.0 129 52-189 319-452 (462)
66 cd02982 PDI_b'_family Protein 99.7 1.9E-16 4.2E-21 111.2 9.7 88 101-189 10-101 (103)
67 KOG0912 Thiol-disulfide isomer 99.7 8.5E-17 1.8E-21 130.5 8.7 100 89-193 3-108 (375)
68 TIGR02187 GlrX_arch Glutaredox 99.6 3.7E-15 7.9E-20 118.7 12.0 88 103-192 19-112 (215)
69 PHA02125 thioredoxin-like prot 99.6 5.1E-15 1.1E-19 98.7 10.1 63 107-179 2-64 (75)
70 PF13098 Thioredoxin_2: Thiore 99.6 2.5E-15 5.4E-20 107.2 7.4 86 101-186 3-111 (112)
71 TIGR02187 GlrX_arch Glutaredox 99.6 1.5E-14 3.3E-19 115.1 12.1 82 102-188 131-213 (215)
72 KOG0191 Thioredoxin/protein di 99.6 5.2E-15 1.1E-19 127.2 10.0 100 90-193 37-136 (383)
73 cd02955 SSP411 TRX domain, SSP 99.6 3.5E-14 7.6E-19 103.6 12.6 83 90-177 6-100 (124)
74 TIGR00412 redox_disulf_2 small 99.6 1.6E-14 3.6E-19 96.5 9.2 69 107-183 2-71 (76)
75 cd02958 UAS UAS family; UAS is 99.6 1.2E-13 2.6E-18 99.3 12.9 104 90-193 4-113 (114)
76 PRK15412 thiol:disulfide inter 99.6 6.6E-14 1.4E-18 109.0 12.4 91 101-194 66-179 (185)
77 TIGR02738 TrbB type-F conjugat 99.5 9.7E-14 2.1E-18 104.8 11.9 89 101-191 48-153 (153)
78 TIGR02740 TraF-like TraF-like 99.5 1.9E-13 4E-18 112.4 14.0 90 101-192 164-265 (271)
79 PRK14018 trifunctional thiored 99.5 1.4E-13 3.1E-18 121.4 12.8 87 101-188 54-170 (521)
80 cd03008 TryX_like_RdCVF Trypar 99.5 1.2E-13 2.5E-18 103.4 10.2 73 101-173 23-128 (146)
81 TIGR00385 dsbE periplasmic pro 99.5 2.5E-13 5.5E-18 104.5 12.3 89 101-192 61-172 (173)
82 PRK11509 hydrogenase-1 operon 99.5 4.2E-13 9.2E-18 98.3 12.4 100 90-194 25-127 (132)
83 cd02973 TRX_GRX_like Thioredox 99.5 1.9E-13 4E-18 88.8 8.4 60 107-170 3-62 (67)
84 PF13905 Thioredoxin_8: Thiore 99.5 3.5E-13 7.7E-18 93.2 10.4 67 103-169 1-94 (95)
85 COG4232 Thiol:disulfide interc 99.5 3.1E-13 6.6E-18 118.9 11.9 111 77-190 449-567 (569)
86 cd03010 TlpA_like_DsbE TlpA-li 99.5 3.4E-13 7.5E-18 98.3 10.3 78 101-181 23-124 (127)
87 cd02964 TryX_like_family Trypa 99.5 5.1E-13 1.1E-17 98.3 9.6 71 101-171 15-113 (132)
88 PRK03147 thiol-disulfide oxido 99.5 1.7E-12 3.7E-17 99.3 12.7 89 101-189 59-170 (173)
89 cd03009 TryX_like_TryX_NRX Try 99.5 6E-13 1.3E-17 97.6 9.6 72 101-172 16-114 (131)
90 KOG1731 FAD-dependent sulfhydr 99.5 5.2E-14 1.1E-18 122.7 4.5 107 83-193 41-155 (606)
91 KOG0191 Thioredoxin/protein di 99.4 4.6E-13 1E-17 115.2 9.4 106 83-193 146-254 (383)
92 cd03026 AhpF_NTD_C TRX-GRX-lik 99.4 1.3E-12 2.7E-17 90.0 9.7 75 102-182 11-85 (89)
93 PLN02919 haloacid dehalogenase 99.4 1.4E-12 3.1E-17 124.4 12.7 93 102-194 419-539 (1057)
94 cd02960 AGR Anterior Gradient 99.4 1.2E-12 2.5E-17 95.9 8.1 87 90-178 10-100 (130)
95 cd03011 TlpA_like_ScsD_MtbDsbE 99.4 2.2E-12 4.8E-17 93.3 9.4 82 101-185 18-120 (123)
96 PRK13728 conjugal transfer pro 99.4 5.8E-12 1.3E-16 97.1 11.6 85 107-193 73-173 (181)
97 cd02966 TlpA_like_family TlpA- 99.4 4.8E-12 1E-16 88.9 10.2 75 101-176 17-116 (116)
98 smart00594 UAS UAS domain. 99.4 9E-12 1.9E-16 90.7 11.7 99 89-187 13-121 (122)
99 PF13899 Thioredoxin_7: Thiore 99.4 1.3E-12 2.8E-17 88.5 6.8 75 90-166 4-81 (82)
100 cd02967 mauD Methylamine utili 99.4 4.1E-12 8.9E-17 90.6 9.4 68 103-171 21-109 (114)
101 PF08534 Redoxin: Redoxin; In 99.3 2.6E-11 5.7E-16 90.3 11.6 79 101-179 26-136 (146)
102 cd03012 TlpA_like_DipZ_like Tl 99.3 3.1E-11 6.6E-16 88.0 10.2 76 102-177 22-125 (126)
103 TIGR01626 ytfJ_HI0045 conserve 99.2 1.2E-10 2.5E-15 90.3 10.9 88 101-192 57-180 (184)
104 PTZ00056 glutathione peroxidas 99.2 1.7E-10 3.6E-15 90.9 11.8 93 102-194 38-181 (199)
105 COG0526 TrxA Thiol-disulfide i 99.2 7.3E-11 1.6E-15 82.3 8.8 86 103-189 32-122 (127)
106 PLN02399 phospholipid hydroper 99.2 3.5E-10 7.5E-15 91.1 12.4 91 102-192 98-235 (236)
107 PLN02412 probable glutathione 99.2 1.9E-10 4.1E-15 88.1 10.0 92 102-193 28-166 (167)
108 PF02114 Phosducin: Phosducin; 99.2 1.5E-10 3.3E-15 94.6 9.5 113 79-195 123-238 (265)
109 TIGR02661 MauD methylamine deh 99.1 5.5E-10 1.2E-14 87.2 11.3 73 101-173 72-162 (189)
110 cd02969 PRX_like1 Peroxiredoxi 99.1 1.9E-09 4E-14 82.6 12.4 93 102-194 24-155 (171)
111 KOG0914 Thioredoxin-like prote 99.1 1.7E-10 3.6E-15 90.1 6.0 91 81-174 124-221 (265)
112 KOG1672 ATP binding protein [P 99.1 4.4E-10 9.6E-15 86.2 8.2 95 79-179 64-158 (211)
113 cd02991 UAS_ETEA UAS family, E 99.1 5.4E-09 1.2E-13 75.4 12.7 104 90-194 4-116 (116)
114 TIGR02196 GlrX_YruB Glutaredox 99.0 2.1E-09 4.6E-14 70.0 8.7 69 107-191 2-73 (74)
115 cd00340 GSH_Peroxidase Glutath 99.0 1.9E-09 4.2E-14 81.1 9.0 82 102-184 21-149 (152)
116 TIGR02540 gpx7 putative glutat 99.0 2.9E-09 6.3E-14 80.2 9.3 91 101-191 20-153 (153)
117 TIGR02200 GlrX_actino Glutared 99.0 6.1E-09 1.3E-13 68.8 8.7 57 107-171 2-63 (77)
118 KOG2501 Thioredoxin, nucleored 98.9 3.4E-09 7.4E-14 79.3 7.4 71 102-172 32-130 (157)
119 cd03017 PRX_BCP Peroxiredoxin 98.9 1.2E-08 2.6E-13 75.1 10.2 83 102-184 22-136 (140)
120 cd01659 TRX_superfamily Thiore 98.9 7.6E-09 1.7E-13 64.2 7.6 60 107-168 1-63 (69)
121 PF06110 DUF953: Eukaryotic pr 98.9 9.3E-09 2E-13 74.2 8.9 83 88-170 4-101 (119)
122 KOG0913 Thiol-disulfide isomer 98.9 2.2E-10 4.7E-15 90.3 0.1 97 83-188 26-123 (248)
123 KOG3414 Component of the U4/U6 98.9 3.7E-08 8E-13 70.6 10.5 87 82-171 4-90 (142)
124 PF03190 Thioredox_DsbH: Prote 98.9 2E-08 4.3E-13 76.2 9.7 75 98-173 32-118 (163)
125 COG2143 Thioredoxin-related pr 98.9 3.6E-08 7.9E-13 73.4 10.8 88 101-188 40-146 (182)
126 PTZ00256 glutathione peroxidas 98.9 2.4E-08 5.2E-13 77.5 10.0 91 102-192 39-182 (183)
127 PF13192 Thioredoxin_3: Thiore 98.8 5.2E-08 1.1E-12 64.9 9.7 71 108-186 3-74 (76)
128 PRK00522 tpx lipid hydroperoxi 98.8 5.2E-08 1.1E-12 74.6 10.8 74 102-176 43-149 (167)
129 PF00578 AhpC-TSA: AhpC/TSA fa 98.8 4.5E-08 9.7E-13 70.4 9.7 70 102-171 24-122 (124)
130 PF13728 TraF: F plasmid trans 98.8 1E-07 2.2E-12 75.9 12.1 85 101-187 118-214 (215)
131 PF02966 DIM1: Mitosis protein 98.8 2.3E-07 5E-12 67.3 12.4 90 83-176 2-92 (133)
132 KOG0911 Glutaredoxin-related p 98.8 4.3E-09 9.3E-14 82.7 3.7 90 83-180 3-92 (227)
133 cd03015 PRX_Typ2cys Peroxiredo 98.8 6.2E-08 1.3E-12 74.4 10.0 89 102-190 28-156 (173)
134 TIGR02180 GRX_euk Glutaredoxin 98.8 3.3E-08 7.1E-13 66.4 7.3 61 107-171 1-65 (84)
135 PF14595 Thioredoxin_9: Thiore 98.8 3.3E-08 7.2E-13 72.6 7.9 85 101-193 39-127 (129)
136 PRK09437 bcp thioredoxin-depen 98.8 1.5E-07 3.2E-12 70.7 11.0 81 102-182 29-144 (154)
137 TIGR03137 AhpC peroxiredoxin. 98.8 9E-08 2E-12 74.6 10.1 86 102-187 30-152 (187)
138 cd02970 PRX_like2 Peroxiredoxi 98.7 1.6E-07 3.4E-12 69.6 10.9 44 103-146 24-68 (149)
139 cd03018 PRX_AhpE_like Peroxire 98.7 1.8E-07 4E-12 69.6 10.7 75 104-178 29-134 (149)
140 PRK11200 grxA glutaredoxin 1; 98.7 9.6E-08 2.1E-12 64.8 8.4 63 106-171 2-69 (85)
141 cd03014 PRX_Atyp2cys Peroxired 98.7 1.4E-07 3.1E-12 69.8 10.0 75 102-177 25-129 (143)
142 KOG3425 Uncharacterized conser 98.7 9.2E-08 2E-12 68.1 8.2 79 88-167 11-104 (128)
143 PF11009 DUF2847: Protein of u 98.7 3.6E-07 7.9E-12 64.3 10.6 89 84-174 2-94 (105)
144 PRK10606 btuE putative glutath 98.6 6.9E-07 1.5E-11 69.4 10.6 42 102-144 24-66 (183)
145 cd02976 NrdH NrdH-redoxin (Nrd 98.6 8.5E-07 1.8E-11 57.4 8.7 62 107-179 2-66 (73)
146 cd02971 PRX_family Peroxiredox 98.5 9.3E-07 2E-11 64.9 9.8 78 102-179 21-131 (140)
147 cd02968 SCO SCO (an acronym fo 98.5 3.5E-07 7.6E-12 67.4 7.5 44 102-145 21-69 (142)
148 PRK10382 alkyl hydroperoxide r 98.5 1.9E-06 4.2E-11 67.2 11.6 89 102-190 30-155 (187)
149 TIGR02739 TraF type-F conjugat 98.5 2.2E-06 4.9E-11 69.7 12.1 91 102-194 149-251 (256)
150 TIGR02183 GRXA Glutaredoxin, G 98.5 5.2E-07 1.1E-11 61.5 7.2 78 107-197 2-84 (86)
151 PRK13190 putative peroxiredoxi 98.5 1.8E-06 4E-11 68.1 10.9 89 103-191 27-154 (202)
152 PRK13703 conjugal pilus assemb 98.5 3.1E-06 6.7E-11 68.6 11.5 91 103-193 143-243 (248)
153 PRK15000 peroxidase; Provision 98.4 2.1E-06 4.5E-11 67.7 10.1 89 102-190 33-161 (200)
154 PF00462 Glutaredoxin: Glutare 98.4 2.7E-06 5.8E-11 53.7 8.4 56 107-170 1-59 (60)
155 PF07449 HyaE: Hydrogenase-1 e 98.4 1.7E-06 3.7E-11 61.2 7.2 93 83-181 11-105 (107)
156 PF01216 Calsequestrin: Calseq 98.4 1.1E-05 2.3E-10 67.6 12.7 106 81-193 34-146 (383)
157 TIGR03143 AhpF_homolog putativ 98.4 4.5E-06 9.8E-11 75.3 11.3 78 103-186 475-553 (555)
158 cd03023 DsbA_Com1_like DsbA fa 98.4 7.6E-06 1.7E-10 60.6 10.8 41 101-142 3-43 (154)
159 cd03419 GRX_GRXh_1_2_like Glut 98.3 2.6E-06 5.6E-11 56.9 6.9 59 107-171 2-64 (82)
160 KOG3171 Conserved phosducin-li 98.3 1.4E-06 3.1E-11 68.1 6.3 114 77-194 134-250 (273)
161 PRK15317 alkyl hydroperoxide r 98.2 1.1E-05 2.4E-10 72.2 11.2 81 103-189 115-196 (517)
162 PRK13599 putative peroxiredoxi 98.2 1.6E-05 3.4E-10 63.4 10.7 88 103-190 28-155 (215)
163 PRK13189 peroxiredoxin; Provis 98.2 1.4E-05 3.1E-10 63.9 10.2 89 102-190 34-162 (222)
164 PTZ00137 2-Cys peroxiredoxin; 98.2 2.6E-05 5.6E-10 63.8 11.5 89 102-190 97-224 (261)
165 PF13848 Thioredoxin_6: Thiore 98.2 5.7E-05 1.2E-09 57.8 12.5 100 83-192 79-183 (184)
166 cd03020 DsbA_DsbC_DsbG DsbA fa 98.2 1.6E-05 3.4E-10 62.3 9.4 74 101-183 75-193 (197)
167 PRK10329 glutaredoxin-like pro 98.2 3.1E-05 6.8E-10 52.1 9.5 72 107-194 3-76 (81)
168 cd02066 GRX_family Glutaredoxi 98.2 2.4E-05 5.1E-10 50.2 8.5 57 107-171 2-61 (72)
169 cd02981 PDI_b_family Protein D 98.2 3.7E-05 7.9E-10 53.0 9.9 92 84-187 2-94 (97)
170 PRK10877 protein disulfide iso 98.2 1.9E-05 4.1E-10 63.6 9.6 80 101-188 105-228 (232)
171 TIGR02189 GlrX-like_plant Glut 98.1 1.3E-05 2.7E-10 56.1 7.4 57 107-171 10-72 (99)
172 PTZ00253 tryparedoxin peroxida 98.1 2.7E-05 5.9E-10 61.2 10.1 75 102-176 35-145 (199)
173 cd03016 PRX_1cys Peroxiredoxin 98.1 4.3E-05 9.2E-10 60.3 11.2 86 105-190 28-153 (203)
174 PRK13191 putative peroxiredoxi 98.1 2.6E-05 5.7E-10 62.1 9.9 88 103-190 33-160 (215)
175 TIGR02194 GlrX_NrdH Glutaredox 98.1 2.3E-05 5E-10 51.3 8.0 54 107-169 1-57 (72)
176 TIGR02190 GlrX-dom Glutaredoxi 98.1 2.3E-05 4.9E-10 52.4 7.9 62 102-171 5-68 (79)
177 PF13462 Thioredoxin_4: Thiore 98.1 0.00014 3E-09 54.5 12.8 82 101-187 10-160 (162)
178 TIGR02181 GRX_bact Glutaredoxi 98.1 2.1E-05 4.6E-10 52.3 7.3 57 107-171 1-60 (79)
179 cd03418 GRX_GRXb_1_3_like Glut 98.1 4.5E-05 9.8E-10 49.9 8.8 57 107-171 2-62 (75)
180 PHA03050 glutaredoxin; Provisi 98.1 3.1E-05 6.6E-10 55.1 8.4 60 107-171 15-80 (108)
181 cd02983 P5_C P5 family, C-term 98.1 0.00017 3.7E-09 53.0 12.4 106 82-193 3-117 (130)
182 cd03019 DsbA_DsbA DsbA family, 98.0 5.5E-05 1.2E-09 57.6 9.8 41 102-142 14-54 (178)
183 cd03027 GRX_DEP Glutaredoxin ( 98.0 5.9E-05 1.3E-09 49.4 8.2 57 107-171 3-62 (73)
184 TIGR03140 AhpF alkyl hydropero 98.0 7E-05 1.5E-09 67.0 11.3 82 103-190 116-198 (515)
185 TIGR00365 monothiol glutaredox 98.0 0.00013 2.9E-09 50.8 9.8 61 103-171 11-78 (97)
186 PRK10954 periplasmic protein d 98.0 8.5E-05 1.8E-09 58.7 9.8 41 103-143 37-80 (207)
187 KOG3170 Conserved phosducin-li 97.9 5.4E-05 1.2E-09 58.8 7.4 90 80-176 90-179 (240)
188 PRK11657 dsbG disulfide isomer 97.9 0.00021 4.6E-09 58.2 11.1 83 101-185 115-246 (251)
189 COG0695 GrxC Glutaredoxin and 97.9 0.00019 4.1E-09 48.2 8.9 63 107-180 3-70 (80)
190 cd03028 GRX_PICOT_like Glutare 97.9 0.00015 3.2E-09 49.7 8.4 61 103-171 7-74 (90)
191 cd03029 GRX_hybridPRX5 Glutare 97.8 0.00017 3.7E-09 47.0 8.1 57 107-171 3-61 (72)
192 TIGR03143 AhpF_homolog putativ 97.8 0.00051 1.1E-08 62.1 12.4 101 90-194 355-457 (555)
193 cd02972 DsbA_family DsbA famil 97.7 0.00017 3.6E-09 48.7 7.2 60 107-166 1-91 (98)
194 PRK10638 glutaredoxin 3; Provi 97.7 0.00032 6.9E-09 47.2 8.1 57 107-171 4-63 (83)
195 cd03072 PDI_b'_ERp44 PDIb' fam 97.7 0.00053 1.2E-08 48.9 9.3 97 89-192 6-109 (111)
196 PF05768 DUF836: Glutaredoxin- 97.6 0.00082 1.8E-08 45.1 8.9 77 107-187 2-80 (81)
197 PF07912 ERp29_N: ERp29, N-ter 97.6 0.0018 3.9E-08 46.7 10.8 98 89-196 11-120 (126)
198 PTZ00062 glutaredoxin; Provisi 97.6 0.00095 2E-08 52.8 9.8 52 112-171 125-179 (204)
199 cd03073 PDI_b'_ERp72_ERp57 PDI 97.5 0.00083 1.8E-08 47.9 8.5 75 114-193 29-109 (111)
200 COG1331 Highly conserved prote 97.4 0.0011 2.4E-08 60.3 9.3 79 89-171 33-122 (667)
201 KOG2603 Oligosaccharyltransfer 97.4 0.0016 3.6E-08 53.9 9.3 81 83-166 42-134 (331)
202 PRK10824 glutaredoxin-4; Provi 97.4 0.0014 3E-08 47.1 7.7 68 91-171 7-81 (115)
203 PRK12759 bifunctional gluaredo 97.2 0.0016 3.6E-08 56.7 8.1 57 107-171 4-71 (410)
204 KOG1752 Glutaredoxin and relat 97.1 0.0037 8.1E-08 44.0 7.9 59 107-171 16-78 (104)
205 cd03066 PDI_b_Calsequestrin_mi 97.1 0.013 2.8E-07 40.9 10.5 96 83-194 2-100 (102)
206 cd03067 PDI_b_PDIR_N PDIb fami 97.0 0.011 2.3E-07 41.2 8.8 93 84-181 4-102 (112)
207 cd03069 PDI_b_ERp57 PDIb famil 96.6 0.039 8.5E-07 38.6 9.5 94 83-193 2-102 (104)
208 PF13743 Thioredoxin_5: Thiore 96.6 0.014 2.9E-07 45.1 7.7 34 109-142 2-35 (176)
209 PF00837 T4_deiodinase: Iodoth 96.6 0.026 5.6E-07 45.4 9.3 57 83-143 84-142 (237)
210 COG1225 Bcp Peroxiredoxin [Pos 96.5 0.065 1.4E-06 40.6 10.7 76 101-176 28-138 (157)
211 cd03031 GRX_GRX_like Glutaredo 96.5 0.024 5.2E-07 42.5 8.3 57 107-171 2-71 (147)
212 cd02990 UAS_FAF1 UAS family, F 96.5 0.2 4.4E-06 37.0 13.0 102 91-192 5-134 (136)
213 cd03013 PRX5_like Peroxiredoxi 96.4 0.031 6.6E-07 42.1 8.5 42 103-144 29-74 (155)
214 PF13848 Thioredoxin_6: Thiore 96.4 0.037 8E-07 42.0 9.0 65 120-189 7-73 (184)
215 cd02974 AhpF_NTD_N Alkyl hydro 95.8 0.39 8.5E-06 33.1 11.1 83 90-189 8-92 (94)
216 cd03060 GST_N_Omega_like GST_N 95.5 0.064 1.4E-06 34.4 6.0 59 108-171 2-60 (71)
217 PF01323 DSBA: DSBA-like thior 95.5 0.24 5.3E-06 37.8 10.4 26 107-132 2-27 (193)
218 cd03068 PDI_b_ERp72 PDIb famil 95.5 0.57 1.2E-05 33.0 11.4 97 83-194 2-107 (107)
219 cd02977 ArsC_family Arsenate R 95.2 0.015 3.2E-07 40.7 2.3 53 107-165 1-56 (105)
220 cd03036 ArsC_like Arsenate Red 95.1 0.016 3.5E-07 41.2 2.3 53 108-166 2-57 (111)
221 KOG2640 Thioredoxin [Function 95.1 0.0065 1.4E-07 50.4 0.3 89 101-191 74-162 (319)
222 COG3019 Predicted metal-bindin 95.0 0.43 9.2E-06 35.3 9.3 77 104-196 25-105 (149)
223 cd02978 KaiB_like KaiB-like fa 94.5 0.19 4.2E-06 32.9 6.0 60 106-166 3-63 (72)
224 KOG2507 Ubiquitin regulatory p 94.2 0.9 2E-05 39.6 11.0 100 91-191 7-111 (506)
225 COG1651 DsbG Protein-disulfide 94.2 0.58 1.3E-05 37.5 9.5 36 149-189 206-241 (244)
226 PRK15317 alkyl hydroperoxide r 93.9 0.89 1.9E-05 40.8 11.2 87 90-192 8-95 (517)
227 PRK12559 transcriptional regul 93.8 0.052 1.1E-06 39.8 2.4 35 107-147 2-36 (131)
228 TIGR03140 AhpF alkyl hydropero 93.7 1.1 2.3E-05 40.3 11.2 89 90-193 8-97 (515)
229 TIGR02742 TrbC_Ftype type-F co 93.3 1 2.2E-05 33.0 8.6 90 89-187 11-111 (130)
230 COG4545 Glutaredoxin-related p 93.1 0.32 7E-06 32.0 5.1 57 108-171 5-76 (85)
231 PRK01655 spxA transcriptional 93.1 0.056 1.2E-06 39.6 1.7 35 107-147 2-36 (131)
232 COG2761 FrnE Predicted dithiol 92.9 0.28 6.1E-06 39.3 5.6 42 149-194 175-216 (225)
233 PRK09301 circadian clock prote 92.9 0.45 9.8E-06 33.3 5.9 77 102-180 4-81 (103)
234 TIGR02654 circ_KaiB circadian 92.8 0.49 1.1E-05 32.2 5.8 75 104-180 3-78 (87)
235 PF09673 TrbC_Ftype: Type-F co 92.7 1.5 3.3E-05 31.1 8.7 85 89-181 10-106 (113)
236 cd03059 GST_N_SspA GST_N famil 92.5 0.32 6.8E-06 31.0 4.6 56 108-169 2-57 (73)
237 cd03035 ArsC_Yffb Arsenate Red 92.4 0.24 5.2E-06 34.8 4.1 35 107-147 1-35 (105)
238 cd03032 ArsC_Spx Arsenate Redu 92.3 0.11 2.3E-06 37.1 2.3 35 107-147 2-36 (115)
239 PHA03075 glutaredoxin-like pro 92.2 0.25 5.3E-06 35.3 3.9 29 104-132 2-30 (123)
240 PF13417 GST_N_3: Glutathione 91.9 1.7 3.7E-05 28.0 7.6 57 109-171 1-57 (75)
241 cd00570 GST_N_family Glutathio 91.8 0.64 1.4E-05 28.5 5.3 58 108-171 2-60 (71)
242 cd03051 GST_N_GTT2_like GST_N 91.6 0.36 7.8E-06 30.6 4.1 58 108-170 2-62 (74)
243 cd03041 GST_N_2GST_N GST_N fam 91.2 2 4.3E-05 27.9 7.3 52 107-164 2-56 (77)
244 PRK13344 spxA transcriptional 91.1 0.19 4.1E-06 36.9 2.5 35 107-147 2-36 (132)
245 COG1999 Uncharacterized protei 90.9 6.5 0.00014 31.0 11.3 93 101-193 65-206 (207)
246 TIGR01617 arsC_related transcr 90.5 0.68 1.5E-05 33.0 4.9 34 108-147 2-35 (117)
247 PF06053 DUF929: Domain of unk 90.4 1.2 2.6E-05 36.3 6.8 58 101-166 56-113 (249)
248 cd03040 GST_N_mPGES2 GST_N fam 90.3 2.3 4.9E-05 27.4 7.0 52 107-165 2-54 (77)
249 cd03037 GST_N_GRX2 GST_N famil 89.9 0.76 1.6E-05 29.2 4.4 56 109-170 3-58 (71)
250 cd03045 GST_N_Delta_Epsilon GS 87.3 0.76 1.6E-05 29.3 3.1 57 108-170 2-61 (74)
251 cd03055 GST_N_Omega GST_N fami 87.2 2.1 4.5E-05 28.7 5.3 54 107-164 19-72 (89)
252 PF07689 KaiB: KaiB domain; I 85.6 0.29 6.2E-06 32.9 0.3 54 110-164 3-57 (82)
253 cd03022 DsbA_HCCA_Iso DsbA fam 83.7 1.8 3.8E-05 33.0 4.0 33 149-186 158-190 (192)
254 PRK00366 ispG 4-hydroxy-3-meth 83.3 2.5 5.5E-05 36.1 5.0 79 113-191 272-357 (360)
255 COG3531 Predicted protein-disu 82.6 3 6.6E-05 32.7 4.8 44 149-192 165-210 (212)
256 cd03074 PDI_b'_Calsequestrin_C 82.2 15 0.00034 26.0 9.5 89 101-190 18-119 (120)
257 cd03056 GST_N_4 GST_N family, 81.2 3.4 7.3E-05 25.9 4.1 58 108-171 2-62 (73)
258 KOG2792 Putative cytochrome C 81.1 15 0.00034 30.1 8.5 94 101-194 137-278 (280)
259 cd03024 DsbA_FrnE DsbA family, 79.3 4.4 9.5E-05 31.1 4.9 33 149-185 166-198 (201)
260 COG0386 BtuE Glutathione perox 79.0 24 0.00053 26.7 8.4 32 162-193 131-162 (162)
261 cd03052 GST_N_GDAP1 GST_N fami 78.4 9.1 0.0002 24.5 5.5 58 108-171 2-62 (73)
262 cd03025 DsbA_FrnE_like DsbA fa 78.1 3.4 7.4E-05 31.5 3.9 30 107-136 3-32 (193)
263 COG3634 AhpF Alkyl hydroperoxi 78.1 13 0.00029 32.2 7.6 79 102-186 115-193 (520)
264 cd03033 ArsC_15kD Arsenate Red 75.3 6.1 0.00013 28.1 4.3 35 107-147 2-36 (113)
265 PF02630 SCO1-SenC: SCO1/SenC; 75.1 14 0.00031 28.0 6.6 44 101-144 50-97 (174)
266 PF09822 ABC_transp_aux: ABC-t 75.0 44 0.00094 27.2 12.2 58 101-158 22-88 (271)
267 COG0821 gcpE 1-hydroxy-2-methy 74.1 6.4 0.00014 33.4 4.7 80 115-194 264-354 (361)
268 PF06491 Disulph_isomer: Disul 72.9 35 0.00075 25.1 9.8 109 82-195 17-136 (136)
269 TIGR00014 arsC arsenate reduct 72.8 2.8 6.1E-05 29.7 2.0 34 108-147 2-35 (114)
270 PRK13730 conjugal transfer pil 72.4 7.8 0.00017 30.6 4.5 35 146-182 151-185 (212)
271 PF11287 DUF3088: Protein of u 72.0 7.8 0.00017 27.6 4.0 51 115-166 24-76 (112)
272 cd03034 ArsC_ArsC Arsenate Red 71.6 2.7 5.9E-05 29.7 1.7 34 108-147 2-35 (112)
273 cd03061 GST_N_CLIC GST_N famil 71.0 30 0.00065 23.6 6.8 54 112-171 19-72 (91)
274 PF06953 ArsD: Arsenical resis 70.6 33 0.00072 24.8 7.2 52 134-188 39-99 (123)
275 PF02401 LYTB: LytB protein; 68.8 27 0.00058 29.1 7.2 99 88-193 166-280 (281)
276 KOG2244 Highly conserved prote 68.1 5.8 0.00013 36.0 3.3 74 89-166 102-185 (786)
277 COG0278 Glutaredoxin-related p 67.2 32 0.00068 24.1 6.1 71 91-171 7-82 (105)
278 PRK09481 sspA stringent starva 66.3 20 0.00043 27.8 5.8 63 103-171 7-69 (211)
279 cd03053 GST_N_Phi GST_N family 66.0 19 0.00041 22.7 4.8 58 107-170 2-62 (76)
280 PF04551 GcpE: GcpE protein; 63.0 6.9 0.00015 33.5 2.7 76 115-194 271-358 (359)
281 cd03025 DsbA_FrnE_like DsbA fa 62.6 13 0.00028 28.2 4.1 21 149-169 160-180 (193)
282 TIGR00612 ispG_gcpE 1-hydroxy- 62.2 13 0.00027 31.8 4.1 76 111-190 261-344 (346)
283 KOG4277 Uncharacterized conser 61.8 67 0.0015 27.2 8.2 68 100-169 247-325 (468)
284 PF13778 DUF4174: Domain of un 61.5 56 0.0012 23.2 9.1 88 103-190 10-111 (118)
285 PRK10026 arsenate reductase; P 61.1 8.3 0.00018 28.6 2.6 35 107-147 4-38 (141)
286 KOG1422 Intracellular Cl- chan 59.8 80 0.0017 25.2 7.9 47 114-164 20-66 (221)
287 cd03049 GST_N_3 GST_N family, 58.9 22 0.00047 22.3 4.0 60 109-171 3-62 (73)
288 COG1393 ArsC Arsenate reductas 58.4 7 0.00015 28.0 1.7 21 107-127 3-23 (117)
289 PRK13669 hypothetical protein; 58.2 27 0.00059 23.2 4.4 57 124-194 19-75 (78)
290 cd03021 DsbA_GSTK DsbA family, 55.5 18 0.00039 28.2 3.8 37 150-186 171-207 (209)
291 cd03058 GST_N_Tau GST_N family 54.8 51 0.0011 20.6 5.8 56 109-170 3-59 (74)
292 PF04592 SelP_N: Selenoprotein 53.5 36 0.00079 27.5 5.2 46 101-146 24-73 (238)
293 PRK01045 ispH 4-hydroxy-3-meth 53.2 1.1E+02 0.0024 25.7 8.3 100 89-193 168-281 (298)
294 PF00255 GSHPx: Glutathione pe 52.4 67 0.0015 22.6 5.9 67 101-168 19-93 (108)
295 PF03960 ArsC: ArsC family; I 51.9 33 0.00071 23.8 4.3 32 110-147 1-32 (110)
296 KOG1364 Predicted ubiquitin re 51.2 26 0.00057 29.9 4.2 54 140-194 137-192 (356)
297 KOG1651 Glutathione peroxidase 51.1 98 0.0021 23.7 6.9 43 101-143 32-75 (171)
298 COG5429 Uncharacterized secret 50.6 74 0.0016 25.9 6.4 85 104-193 42-143 (261)
299 cd03050 GST_N_Theta GST_N fami 46.7 57 0.0012 20.5 4.6 57 108-170 2-61 (76)
300 PRK10853 putative reductase; P 46.4 37 0.00081 24.2 3.9 35 107-147 2-36 (118)
301 PF00352 TBP: Transcription fa 45.3 50 0.0011 21.9 4.2 32 159-192 49-80 (86)
302 TIGR00216 ispH_lytB (E)-4-hydr 44.5 1.8E+02 0.004 24.1 9.6 100 89-193 166-279 (280)
303 PF07700 HNOB: Heme NO binding 44.3 56 0.0012 24.7 4.9 43 102-144 126-169 (171)
304 PF10865 DUF2703: Domain of un 44.0 63 0.0014 23.3 4.8 59 112-176 12-77 (120)
305 PF04134 DUF393: Protein of un 43.2 28 0.0006 24.1 2.8 56 110-169 2-61 (114)
306 PF08348 PAS_6: YheO-like PAS 41.9 1.3E+02 0.0027 21.5 6.4 58 120-189 4-61 (118)
307 COG5494 Predicted thioredoxin/ 40.9 1.8E+02 0.0038 23.4 7.1 64 109-181 15-78 (265)
308 TIGR01287 nifH nitrogenase iro 40.4 26 0.00057 28.4 2.7 65 85-157 207-271 (275)
309 PF06764 DUF1223: Protein of u 39.9 1.9E+02 0.004 22.8 9.0 80 107-193 2-100 (202)
310 PF07293 DUF1450: Protein of u 39.7 55 0.0012 21.7 3.6 59 122-194 17-75 (78)
311 TIGR01616 nitro_assoc nitrogen 38.6 67 0.0015 23.2 4.3 34 107-146 3-36 (126)
312 smart00053 DYNc Dynamin, GTPas 38.4 2.1E+02 0.0046 23.1 7.8 67 102-168 111-202 (240)
313 PHA00009 F capsid protein 36.9 13 0.00028 30.8 0.3 12 1-12 46-57 (427)
314 COG2761 FrnE Predicted dithiol 34.8 78 0.0017 25.5 4.4 34 103-136 3-37 (225)
315 KOG0911 Glutaredoxin-related p 34.7 1.6E+02 0.0035 23.7 6.1 60 103-171 138-205 (227)
316 PF07511 DUF1525: Protein of u 34.3 1.1E+02 0.0023 21.9 4.7 32 151-186 76-107 (114)
317 COG4604 CeuD ABC-type enteroch 32.9 1.5E+02 0.0032 23.9 5.6 49 115-172 168-216 (252)
318 COG2101 SPT15 TATA-box binding 32.5 93 0.002 24.1 4.3 31 161-193 55-85 (185)
319 cd03076 GST_N_Pi GST_N family, 31.6 1.2E+02 0.0026 19.0 4.2 58 108-171 3-60 (73)
320 cd03030 GRX_SH3BGR Glutaredoxi 30.7 1.7E+02 0.0038 19.8 7.6 36 134-171 29-71 (92)
321 cd03044 GST_N_EF1Bgamma GST_N 30.5 1.3E+02 0.0028 18.8 4.3 58 109-171 3-62 (75)
322 TIGR02743 TraW type-F conjugat 30.4 1.2E+02 0.0025 24.0 4.7 39 125-170 158-196 (202)
323 TIGR03757 conj_TIGR03757 integ 29.9 1.4E+02 0.0031 21.3 4.6 27 151-181 77-103 (113)
324 PF05679 CHGN: Chondroitin N-a 29.7 3.1E+02 0.0068 24.7 7.9 77 91-167 269-349 (499)
325 PF14424 Toxin-deaminase: The 29.5 1.1E+02 0.0025 22.3 4.3 26 112-141 105-130 (133)
326 KOG0324 Uncharacterized conser 29.1 57 0.0012 25.9 2.7 53 110-163 80-133 (214)
327 cd03042 GST_N_Zeta GST_N famil 27.6 92 0.002 19.1 3.2 55 110-170 4-61 (73)
328 PRK10387 glutaredoxin 2; Provi 26.7 1.4E+02 0.003 22.7 4.6 56 109-170 3-58 (210)
329 PRK12360 4-hydroxy-3-methylbut 25.6 3.9E+02 0.0085 22.2 10.6 98 89-193 169-280 (281)
330 cd04518 TBP_archaea archaeal T 25.5 1.4E+02 0.0031 22.8 4.4 30 161-192 140-169 (174)
331 PRK00394 transcription factor; 25.0 1.5E+02 0.0033 22.8 4.4 31 160-192 47-77 (179)
332 cd03022 DsbA_HCCA_Iso DsbA fam 24.9 1.3E+02 0.0028 22.5 4.1 30 109-138 3-32 (192)
333 PRK15113 glutathione S-transfe 24.9 1.6E+02 0.0036 22.6 4.8 62 104-171 3-69 (214)
334 cd00652 TBP_TLF TATA box bindi 24.6 1.7E+02 0.0036 22.4 4.6 31 160-192 48-78 (174)
335 PF02702 KdpD: Osmosensitive K 24.6 3.6E+02 0.0079 21.5 8.3 72 101-174 2-74 (211)
336 KOG2868 Decapping enzyme compl 24.0 1.3E+02 0.0029 25.5 4.2 42 119-166 21-62 (335)
337 cd04518 TBP_archaea archaeal T 23.8 1.8E+02 0.0038 22.3 4.6 31 160-192 48-78 (174)
338 PRK00394 transcription factor; 23.8 1.8E+02 0.0038 22.4 4.6 30 160-191 140-169 (179)
339 cd04517 TLF TBP-like factors ( 23.8 1.8E+02 0.004 22.2 4.7 31 160-192 48-78 (174)
340 cd04516 TBP_eukaryotes eukaryo 23.3 1.9E+02 0.004 22.2 4.6 29 161-191 49-77 (174)
341 PHA02151 hypothetical protein 23.2 53 0.0011 25.0 1.5 16 101-116 201-216 (217)
342 PRK00087 4-hydroxy-3-methylbut 23.1 5.5E+02 0.012 24.0 8.5 99 89-194 166-278 (647)
343 PLN00062 TATA-box-binding prot 22.9 1.8E+02 0.004 22.4 4.5 30 160-191 48-77 (179)
344 PF01216 Calsequestrin: Calseq 22.7 5.1E+02 0.011 22.5 10.7 99 82-196 147-248 (383)
345 PRK13738 conjugal transfer pil 22.6 1.4E+02 0.003 23.7 3.8 39 126-170 157-196 (209)
346 KOG4163 Prolyl-tRNA synthetase 22.5 76 0.0016 28.3 2.5 35 82-124 466-500 (551)
347 TIGR02652 conserved hypothetic 22.4 32 0.00069 25.5 0.2 13 114-126 11-23 (163)
348 PF09654 DUF2396: Protein of u 22.4 31 0.00067 25.6 0.1 13 114-126 8-20 (161)
349 cd00652 TBP_TLF TATA box bindi 22.0 2E+02 0.0043 22.0 4.6 29 161-191 141-169 (174)
350 cd00862 ProRS_anticodon_zinc P 21.2 98 0.0021 24.2 2.8 29 83-119 128-158 (202)
351 TIGR02182 GRXB Glutaredoxin, G 21.0 2.1E+02 0.0045 22.1 4.6 55 110-170 3-57 (209)
352 PLN00062 TATA-box-binding prot 21.0 2.1E+02 0.0045 22.1 4.5 29 161-191 140-168 (179)
353 COG1582 FlgEa Uncharacterized 20.2 2.4E+02 0.0052 18.0 3.8 33 155-190 21-54 (67)
354 cd04516 TBP_eukaryotes eukaryo 20.1 2.3E+02 0.0049 21.7 4.5 29 161-191 140-168 (174)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.2e-27 Score=175.14 Aligned_cols=106 Identities=26% Similarity=0.575 Sum_probs=98.3
Q ss_pred eeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEE
Q 029191 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~ 162 (197)
...+.+..+|++.+. +++.||+|+|||+||+||+.+.|.+++++.+|.+.+.++++|.|++. +++.+|+|.++||+
T Consensus 44 ~~~~~s~~~~~~~Vi---~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~-ela~~Y~I~avPtv 119 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVI---NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHP-ELAEDYEISAVPTV 119 (150)
T ss_pred cccccCHHHHHHHHH---ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccccc-chHhhcceeeeeEE
Confidence 445556899998776 88999999999999999999999999999999999999999999999 89999999999999
Q ss_pred EEEcCCeEEEEEeCCCChHHHHHHHHHHhh
Q 029191 163 QLWKDGKKQAEVIGGHKSYLVINEVREMIG 192 (197)
Q Consensus 163 ~~~~~G~~v~~~~G~~~~~~l~~~i~~~l~ 192 (197)
++|+||++++++.|..+.+.+.+.|++++.
T Consensus 120 lvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 120 LVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 999999999999999999888888888875
No 2
>PHA02278 thioredoxin-like protein
Probab=99.92 E-value=2.3e-24 Score=152.48 Aligned_cols=93 Identities=18% Similarity=0.264 Sum_probs=83.0
Q ss_pred CChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh---HHHHHHcCCCCCCEEE
Q 029191 87 GSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP---HKLVARAGVMKMPTIQ 163 (197)
Q Consensus 87 ~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~---~~l~~~~~i~~~Pt~~ 163 (197)
.+.++|++.+ +++++++|+|||+|||+|+.+.|.++++++++..++.|+++|++.++ .+++++|+|.++||++
T Consensus 2 ~~~~~~~~~i----~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i 77 (103)
T PHA02278 2 NSLVDLNTAI----RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLI 77 (103)
T ss_pred CCHHHHHHHH----hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEE
Confidence 3578999999 78999999999999999999999999999887566889999999862 3799999999999999
Q ss_pred EEcCCeEEEEEeCCCChHHH
Q 029191 164 LWKDGKKQAEVIGGHKSYLV 183 (197)
Q Consensus 164 ~~~~G~~v~~~~G~~~~~~l 183 (197)
+|++|+.+.+..|..+.+.+
T Consensus 78 ~fk~G~~v~~~~G~~~~~~l 97 (103)
T PHA02278 78 GYKDGQLVKKYEDQVTPMQL 97 (103)
T ss_pred EEECCEEEEEEeCCCCHHHH
Confidence 99999999999998887443
No 3
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.92 E-value=2e-24 Score=154.55 Aligned_cols=89 Identities=21% Similarity=0.341 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCC
Q 029191 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDG 168 (197)
Q Consensus 89 ~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G 168 (197)
.++|++.+.. +.++++||+|||+||++|+.+.|.++++++++.+.+.|++||+|+++ +++.+|+|.++||+++|++|
T Consensus 2 ~~~~~~~i~~--~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~-~la~~~~V~~iPTf~~fk~G 78 (114)
T cd02954 2 GWAVDQAILS--EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVP-DFNKMYELYDPPTVMFFFRN 78 (114)
T ss_pred HHHHHHHHhc--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCH-HHHHHcCCCCCCEEEEEECC
Confidence 5788888853 46899999999999999999999999999999666899999999998 89999999999999999999
Q ss_pred eEEEEEeCCCCh
Q 029191 169 KKQAEVIGGHKS 180 (197)
Q Consensus 169 ~~v~~~~G~~~~ 180 (197)
+.+.+..|..+.
T Consensus 79 ~~v~~~~G~~~~ 90 (114)
T cd02954 79 KHMKIDLGTGNN 90 (114)
T ss_pred EEEEEEcCCCCC
Confidence 999998885554
No 4
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.4e-24 Score=152.77 Aligned_cols=99 Identities=34% Similarity=0.659 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCC
Q 029191 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDG 168 (197)
Q Consensus 89 ~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G 168 (197)
..+++.....+...+++++|+|||+|||||+.+.|.+++|+.+| +++.|++||+|+.. +++++++|.++||++||++|
T Consensus 7 ~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y-~~v~Flkvdvde~~-~~~~~~~V~~~PTf~f~k~g 84 (106)
T KOG0907|consen 7 VSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKY-PDVVFLKVDVDELE-EVAKEFNVKAMPTFVFYKGG 84 (106)
T ss_pred hhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHC-CCCEEEEEecccCH-hHHHhcCceEeeEEEEEECC
Confidence 34555544444366899999999999999999999999999999 66999999999965 89999999999999999999
Q ss_pred eEEEEEeCCCChHHHHHHHHHHhhcc
Q 029191 169 KKQAEVIGGHKSYLVINEVREMIGNE 194 (197)
Q Consensus 169 ~~v~~~~G~~~~~~l~~~i~~~l~~~ 194 (197)
+.+.++.|.... .+++.++.+
T Consensus 85 ~~~~~~vGa~~~-----~l~~~i~~~ 105 (106)
T KOG0907|consen 85 EEVDEVVGANKA-----ELEKKIAKH 105 (106)
T ss_pred EEEEEEecCCHH-----HHHHHHHhc
Confidence 999999998775 555555543
No 5
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.91 E-value=5.6e-24 Score=152.92 Aligned_cols=100 Identities=13% Similarity=0.191 Sum_probs=86.1
Q ss_pred eeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHH-HHcCCCCCCE
Q 029191 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLV-ARAGVMKMPT 161 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~-~~~~i~~~Pt 161 (197)
+.+++ .++|++++.-. +++++++|.||||||++|+.+.|.++++++++++.+.|++||++++. +++ ++|+|.++||
T Consensus 11 v~~l~-~~~f~~~~~v~-~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~-~l~~~~~~I~~~PT 87 (113)
T cd03006 11 VLDFY-KGQLDYAEELR-TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQ-GKCRKQKHFFYFPV 87 (113)
T ss_pred eEEec-hhhhHHHHhcc-cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCh-HHHHHhcCCcccCE
Confidence 44444 58898763100 78999999999999999999999999999999777999999999998 688 5899999999
Q ss_pred EEEEcCCeEEEEEeCCCChHHHHH
Q 029191 162 IQLWKDGKKQAEVIGGHKSYLVIN 185 (197)
Q Consensus 162 ~~~~~~G~~v~~~~G~~~~~~l~~ 185 (197)
+++|++|+...++.|.++.+.+..
T Consensus 88 l~lf~~g~~~~~y~G~~~~~~i~~ 111 (113)
T cd03006 88 IHLYYRSRGPIEYKGPMRAPYMEK 111 (113)
T ss_pred EEEEECCccceEEeCCCCHHHHHh
Confidence 999999998889999999865554
No 6
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.91 E-value=1.9e-23 Score=146.41 Aligned_cols=99 Identities=31% Similarity=0.632 Sum_probs=88.7
Q ss_pred ChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcC
Q 029191 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKD 167 (197)
Q Consensus 88 s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~ 167 (197)
+.++|++.+. +++++++|.||++||++|+.+.|.|+++++++.+++.|+.||++++. +++++|+|.++||+++|++
T Consensus 5 t~~~f~~~i~---~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~ 80 (103)
T PF00085_consen 5 TDENFEKFIN---ESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENK-ELCKKYGVKSVPTIIFFKN 80 (103)
T ss_dssp STTTHHHHHT---TTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSH-HHHHHTTCSSSSEEEEEET
T ss_pred CHHHHHHHHH---ccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccc-hhhhccCCCCCCEEEEEEC
Confidence 4689999994 34999999999999999999999999999999669999999999998 7999999999999999999
Q ss_pred CeEEEEEeCCCChHHHHHHHHHHhhcc
Q 029191 168 GKKQAEVIGGHKSYLVINEVREMIGNE 194 (197)
Q Consensus 168 G~~v~~~~G~~~~~~l~~~i~~~l~~~ 194 (197)
|+.+.++.|..+.+ .|.++|++|
T Consensus 81 g~~~~~~~g~~~~~----~l~~~i~~~ 103 (103)
T PF00085_consen 81 GKEVKRYNGPRNAE----SLIEFIEKH 103 (103)
T ss_dssp TEEEEEEESSSSHH----HHHHHHHHH
T ss_pred CcEEEEEECCCCHH----HHHHHHHcC
Confidence 99999999999984 555555543
No 7
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.91 E-value=1.2e-23 Score=152.35 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=93.9
Q ss_pred eeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHh--HH--HhhHHHHHHHHHh--CCCeEEEEEECCCChHHHHHHcCC
Q 029191 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRK--CI--YLKPKLEKLAADY--HPRLRFYNVDVNAVPHKLVARAGV 156 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~--C~--~~~p~l~~la~~~--~~~v~~~~vd~~~~~~~l~~~~~i 156 (197)
+..++ .++|++.+. +++.++|++|||+||++ |+ .+.|++++++.++ .+++.|++||+|+++ +++++|+|
T Consensus 11 v~~lt-~~nF~~~v~---~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~-~La~~~~I 85 (120)
T cd03065 11 VIDLN-EKNYKQVLK---KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDA-KVAKKLGL 85 (120)
T ss_pred eeeCC-hhhHHHHHH---hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCH-HHHHHcCC
Confidence 55555 599999886 77889999999999987 99 8999999999998 788999999999998 89999999
Q ss_pred CCCCEEEEEcCCeEEEEEeCCCChHHHHHHHHHHhh
Q 029191 157 MKMPTIQLWKDGKKQAEVIGGHKSYLVINEVREMIG 192 (197)
Q Consensus 157 ~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~~~l~ 192 (197)
.++||+++|++|+.+. +.|.++.+.+.++|+++++
T Consensus 86 ~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~~ 120 (120)
T cd03065 86 DEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLIE 120 (120)
T ss_pred ccccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHhC
Confidence 9999999999999886 9999999888888888764
No 8
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.91 E-value=2.3e-23 Score=147.44 Aligned_cols=90 Identities=19% Similarity=0.304 Sum_probs=81.6
Q ss_pred ChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh--HHHHHHcCCCCCCEEEEE
Q 029191 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP--HKLVARAGVMKMPTIQLW 165 (197)
Q Consensus 88 s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~--~~l~~~~~i~~~Pt~~~~ 165 (197)
|.++|++.+.+ ..+++|+|+|||+||++|+.+.|.++++++++ +++.|++||+++++ .+++++|+|+++||+++|
T Consensus 2 ~~~~~~~~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~ 78 (103)
T cd02985 2 SVEELDEALKK--AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFY 78 (103)
T ss_pred CHHHHHHHHHH--cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEE
Confidence 57899999965 44999999999999999999999999999999 88999999999874 268999999999999999
Q ss_pred cCCeEEEEEeCCCCh
Q 029191 166 KDGKKQAEVIGGHKS 180 (197)
Q Consensus 166 ~~G~~v~~~~G~~~~ 180 (197)
++|+.+.++.|....
T Consensus 79 ~~G~~v~~~~G~~~~ 93 (103)
T cd02985 79 KDGEKIHEEEGIGPD 93 (103)
T ss_pred eCCeEEEEEeCCCHH
Confidence 999999999996654
No 9
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.91 E-value=1.3e-23 Score=147.90 Aligned_cols=96 Identities=17% Similarity=0.357 Sum_probs=86.3
Q ss_pred eeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEE
Q 029191 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~ 162 (197)
++.++ .++|++.+ ..+++++|.|||+||++|+.+.|.++++++++++.+.|++||+++++ .++++++|+++||+
T Consensus 3 ~~~l~-~~~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~ 76 (101)
T cd03003 3 IVTLD-RGDFDAAV----NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDR-MLCRSQGVNSYPSL 76 (101)
T ss_pred eEEcC-HhhHHHHh----cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccH-HHHHHcCCCccCEE
Confidence 44554 68999998 66799999999999999999999999999999778999999999998 79999999999999
Q ss_pred EEEcCCeEEEEEeCCCChHHHH
Q 029191 163 QLWKDGKKQAEVIGGHKSYLVI 184 (197)
Q Consensus 163 ~~~~~G~~v~~~~G~~~~~~l~ 184 (197)
++|++|+.+.++.|..+.+.+.
T Consensus 77 ~~~~~g~~~~~~~G~~~~~~l~ 98 (101)
T cd03003 77 YVFPSGMNPEKYYGDRSKESLV 98 (101)
T ss_pred EEEcCCCCcccCCCCCCHHHHH
Confidence 9999999888999999885443
No 10
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.91 E-value=3e-23 Score=153.89 Aligned_cols=108 Identities=18% Similarity=0.233 Sum_probs=93.1
Q ss_pred CeeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCE
Q 029191 82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPT 161 (197)
Q Consensus 82 ~v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt 161 (197)
.+..+.+.++|++.+.. ..+++|||+|||+||++|+.+.|.++++++++++.+.|++||+|+++ +++..|+|.+.||
T Consensus 4 ~l~~l~s~~e~d~~I~~--~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~-dla~~y~I~~~~t 80 (142)
T PLN00410 4 LLPHLHSGWAVDQAILA--EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVP-DFNTMYELYDPCT 80 (142)
T ss_pred hHhhhCCHHHHHHHHHh--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCH-HHHHHcCccCCCc
Confidence 46677889999999875 46899999999999999999999999999999666899999999998 8999999997766
Q ss_pred EE-EEcCCe-EEEEEeC--------CCChHHHHHHHHHHhh
Q 029191 162 IQ-LWKDGK-KQAEVIG--------GHKSYLVINEVREMIG 192 (197)
Q Consensus 162 ~~-~~~~G~-~v~~~~G--------~~~~~~l~~~i~~~l~ 192 (197)
++ ||++|+ .+.+..| ..+.++|++.++.++.
T Consensus 81 ~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~ 121 (142)
T PLN00410 81 VMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
T ss_pred EEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHH
Confidence 66 889999 7889999 5667777777766654
No 11
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.90 E-value=5.1e-23 Score=145.43 Aligned_cols=96 Identities=16% Similarity=0.334 Sum_probs=83.8
Q ss_pred ecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCC-CeEEEEEECCCChHHHHHHcCCCCCCEEE
Q 029191 85 PIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLVARAGVMKMPTIQ 163 (197)
Q Consensus 85 ~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~ 163 (197)
.|.|.++|++++ +++++++|+|||+||++|+.+.|.++++++++++ .+.|+++|+| ++ +++++|+|+++||++
T Consensus 3 ~i~~~~~~~~~i----~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~-~~~~~~~v~~~Pt~~ 76 (102)
T cd02948 3 EINNQEEWEELL----SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TI-DTLKRYRGKCEPTFL 76 (102)
T ss_pred EccCHHHHHHHH----ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CH-HHHHHcCCCcCcEEE
Confidence 467899999998 7799999999999999999999999999999964 4889999999 55 689999999999999
Q ss_pred EEcCCeEEEEEeCCCChHHHHHHH
Q 029191 164 LWKDGKKQAEVIGGHKSYLVINEV 187 (197)
Q Consensus 164 ~~~~G~~v~~~~G~~~~~~l~~~i 187 (197)
+|++|+.+.+..|. +.+.+.+.|
T Consensus 77 ~~~~g~~~~~~~G~-~~~~~~~~i 99 (102)
T cd02948 77 FYKNGELVAVIRGA-NAPLLNKTI 99 (102)
T ss_pred EEECCEEEEEEecC-ChHHHHHHH
Confidence 99999999999996 554444443
No 12
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.90 E-value=3e-23 Score=146.63 Aligned_cols=97 Identities=23% Similarity=0.443 Sum_probs=85.3
Q ss_pred eecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEE
Q 029191 84 TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQ 163 (197)
Q Consensus 84 ~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~ 163 (197)
.++ +.++|++.+. +++++++|.|||+||++|+.+.|.|+++++++.+.+.+++||+++++ +++++|+|.++||++
T Consensus 4 ~~l-~~~~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~i~~~Pt~~ 78 (104)
T cd03004 4 ITL-TPEDFPELVL---NRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYE-SLCQQANIRAYPTIR 78 (104)
T ss_pred eEc-CHHHHHHHHh---cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchH-HHHHHcCCCcccEEE
Confidence 344 3689999876 66789999999999999999999999999999778999999999998 799999999999999
Q ss_pred EEcCC-eEEEEEeCCCC-hHHHHH
Q 029191 164 LWKDG-KKQAEVIGGHK-SYLVIN 185 (197)
Q Consensus 164 ~~~~G-~~v~~~~G~~~-~~~l~~ 185 (197)
+|++| +.+.++.|..+ .+.+.+
T Consensus 79 ~~~~g~~~~~~~~G~~~~~~~l~~ 102 (104)
T cd03004 79 LYPGNASKYHSYNGWHRDADSILE 102 (104)
T ss_pred EEcCCCCCceEccCCCCCHHHHHh
Confidence 99988 88889999876 754443
No 13
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.5e-23 Score=168.65 Aligned_cols=107 Identities=26% Similarity=0.550 Sum_probs=94.6
Q ss_pred eeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEE
Q 029191 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~ 162 (197)
+..|+ ..+|++.+..+ +..+||+|+||||||++|+.+.|.+++++.+|++++.+++||||+++ .++.+|||+++||+
T Consensus 25 I~dvT-~anfe~~V~~~-S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p-~vAaqfgiqsIPtV 101 (304)
T COG3118 25 IKDVT-EANFEQEVIQS-SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEP-MVAAQFGVQSIPTV 101 (304)
T ss_pred ceech-HhHHHHHHHHH-ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcch-hHHHHhCcCcCCeE
Confidence 55555 58999777654 56779999999999999999999999999999999999999999999 79999999999999
Q ss_pred EEEcCCeEEEEEeCCCChHHHHHHHHHHhh
Q 029191 163 QLWKDGKKQAEVIGGHKSYLVINEVREMIG 192 (197)
Q Consensus 163 ~~~~~G~~v~~~~G~~~~~~l~~~i~~~l~ 192 (197)
+.|++|+.++.+.|....+.+.++|.+++.
T Consensus 102 ~af~dGqpVdgF~G~qPesqlr~~ld~~~~ 131 (304)
T COG3118 102 YAFKDGQPVDGFQGAQPESQLRQFLDKVLP 131 (304)
T ss_pred EEeeCCcCccccCCCCcHHHHHHHHHHhcC
Confidence 999999999999999999666666665543
No 14
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.90 E-value=9.2e-23 Score=142.01 Aligned_cols=93 Identities=24% Similarity=0.406 Sum_probs=82.8
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeE
Q 029191 91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKK 170 (197)
Q Consensus 91 ~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~ 170 (197)
+|++.+.+ +.+++++|+|||+||++|+.+.|.++++++.+.+.+.+++||++.+. +++++|+|.++||+++|++|+.
T Consensus 2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQP-QIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCH-HHHHHcCCCCCCEEEEEeCCEE
Confidence 57777753 44889999999999999999999999999999777999999999998 7999999999999999999999
Q ss_pred EEEEeCCCChHHHHHH
Q 029191 171 QAEVIGGHKSYLVINE 186 (197)
Q Consensus 171 v~~~~G~~~~~~l~~~ 186 (197)
+.++.|..+.+.+.++
T Consensus 79 ~~~~~g~~~~~~l~~~ 94 (96)
T cd02956 79 VDGFQGAQPEEQLRQM 94 (96)
T ss_pred eeeecCCCCHHHHHHH
Confidence 9999999888544443
No 15
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.89 E-value=1.3e-22 Score=142.86 Aligned_cols=92 Identities=21% Similarity=0.412 Sum_probs=80.2
Q ss_pred hHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECC-CChHHHHHHcCCCCCCEEEEEcCC
Q 029191 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN-AVPHKLVARAGVMKMPTIQLWKDG 168 (197)
Q Consensus 90 ~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~-~~~~~l~~~~~i~~~Pt~~~~~~G 168 (197)
.++.+.+.. .++++++|.|||+||++|+.+.|.|+++++++ +++.++.||.+ .++ +++++|+|.++||+++|++|
T Consensus 7 ~~~~~~~~~--~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~-~~~~~~~vd~~~~~~-~l~~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 7 NIALDLMAF--NREDYTAVLFYASWCPFSASFRPHFNALSSMF-PQIRHLAIEESSIKP-SLLSRYGVVGFPTILLFNST 82 (100)
T ss_pred hHHHHHHHh--cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHh-ccCceEEEECCCCCH-HHHHhcCCeecCEEEEEcCC
Confidence 455565554 77999999999999999999999999999999 67899999998 666 79999999999999999999
Q ss_pred eEEEEEeCCCChHHHHHH
Q 029191 169 KKQAEVIGGHKSYLVINE 186 (197)
Q Consensus 169 ~~v~~~~G~~~~~~l~~~ 186 (197)
.+.++.|.++.+.+.++
T Consensus 83 -~~~~~~G~~~~~~l~~f 99 (100)
T cd02999 83 -PRVRYNGTRTLDSLAAF 99 (100)
T ss_pred -ceeEecCCCCHHHHHhh
Confidence 77899999998555443
No 16
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.89 E-value=3.6e-22 Score=143.70 Aligned_cols=93 Identities=23% Similarity=0.395 Sum_probs=85.8
Q ss_pred cCeeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCC
Q 029191 81 IPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMP 160 (197)
Q Consensus 81 ~~v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~P 160 (197)
+.+..|++.++|.+.+ .++++|+|+||+|||++|+.+.|.++++++++ +++.|++||+++++ +++++|+|.++|
T Consensus 4 g~v~~i~~~~~~~~~i----~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~-~~i~f~~Vd~~~~~-~l~~~~~v~~vP 77 (113)
T cd02989 4 GKYREVSDEKEFFEIV----KSSERVVCHFYHPEFFRCKIMDKHLEILAKKH-LETKFIKVNAEKAP-FLVEKLNIKVLP 77 (113)
T ss_pred CCeEEeCCHHHHHHHH----hCCCcEEEEEECCCCccHHHHHHHHHHHHHHc-CCCEEEEEEcccCH-HHHHHCCCccCC
Confidence 3588888889999999 67899999999999999999999999999999 77999999999998 799999999999
Q ss_pred EEEEEcCCeEEEEEeCCCC
Q 029191 161 TIQLWKDGKKQAEVIGGHK 179 (197)
Q Consensus 161 t~~~~~~G~~v~~~~G~~~ 179 (197)
|+++|++|+.+.++.|...
T Consensus 78 t~l~fk~G~~v~~~~g~~~ 96 (113)
T cd02989 78 TVILFKNGKTVDRIVGFEE 96 (113)
T ss_pred EEEEEECCEEEEEEECccc
Confidence 9999999999988887543
No 17
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.89 E-value=2.4e-22 Score=144.13 Aligned_cols=99 Identities=19% Similarity=0.356 Sum_probs=83.9
Q ss_pred ChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCC-CeEEEEEECCCChHHHHHHcCCCCCCEEEEEc
Q 029191 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLVARAGVMKMPTIQLWK 166 (197)
Q Consensus 88 s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~ 166 (197)
+.++|++.+... +.+++++|+||||||++|+.+.|.++++++++.+ ++.+++||++.++ .++.+++|.++||+++|+
T Consensus 10 ~~~~~~~~~~~~-~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~-~l~~~~~V~~~Pt~~i~~ 87 (111)
T cd02963 10 TFSQYENEIVPK-SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHER-RLARKLGAHSVPAIVGII 87 (111)
T ss_pred eHHHHHHhhccc-cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccH-HHHHHcCCccCCEEEEEE
Confidence 367887644321 4689999999999999999999999999999953 6999999999988 799999999999999999
Q ss_pred CCeEEEEEeCCCChHHHHHHHH
Q 029191 167 DGKKQAEVIGGHKSYLVINEVR 188 (197)
Q Consensus 167 ~G~~v~~~~G~~~~~~l~~~i~ 188 (197)
+|+.+.+..|..+.+.+.++|+
T Consensus 88 ~g~~~~~~~G~~~~~~l~~~i~ 109 (111)
T cd02963 88 NGQVTFYHDSSFTKQHVVDFVR 109 (111)
T ss_pred CCEEEEEecCCCCHHHHHHHHh
Confidence 9999889999888854444443
No 18
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.88 E-value=4.2e-22 Score=141.85 Aligned_cols=98 Identities=23% Similarity=0.436 Sum_probs=84.3
Q ss_pred eeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhC------CCeEEEEEECCCChHHHHHHcCC
Q 029191 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH------PRLRFYNVDVNAVPHKLVARAGV 156 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~------~~v~~~~vd~~~~~~~l~~~~~i 156 (197)
+.+++ .++|++.+ ..+++++|.||||||++|+++.|.|+++++.+. +.+.+++||++.++ +++++|+|
T Consensus 3 v~~l~-~~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~-~l~~~~~v 76 (108)
T cd02996 3 IVSLT-SGNIDDIL----QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES-DIADRYRI 76 (108)
T ss_pred eEEcC-HhhHHHHH----hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH-HHHHhCCC
Confidence 45554 68999988 678999999999999999999999999998762 25899999999998 79999999
Q ss_pred CCCCEEEEEcCCeE-EEEEeCCCChHHHHHH
Q 029191 157 MKMPTIQLWKDGKK-QAEVIGGHKSYLVINE 186 (197)
Q Consensus 157 ~~~Pt~~~~~~G~~-v~~~~G~~~~~~l~~~ 186 (197)
+++||+++|++|+. ..++.|.++.+.+.++
T Consensus 77 ~~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~f 107 (108)
T cd02996 77 NKYPTLKLFRNGMMMKREYRGQRSVEALAEF 107 (108)
T ss_pred CcCCEEEEEeCCcCcceecCCCCCHHHHHhh
Confidence 99999999999984 5788899988555443
No 19
>PRK09381 trxA thioredoxin; Provisional
Probab=99.88 E-value=1.1e-21 Score=139.73 Aligned_cols=104 Identities=20% Similarity=0.506 Sum_probs=90.3
Q ss_pred eeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEE
Q 029191 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~ 162 (197)
|+.+. .++|++.+. +.+++++|+||++||++|+.+.|.|+++++++.+++.++.+|++..+ .++++|+|+++||+
T Consensus 5 v~~~~-~~~~~~~v~---~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~ 79 (109)
T PRK09381 5 IIHLT-DDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP-GTAPKYGIRGIPTL 79 (109)
T ss_pred ceeeC-hhhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCCh-hHHHhCCCCcCCEE
Confidence 66665 478987664 67899999999999999999999999999999778999999999998 79999999999999
Q ss_pred EEEcCCeEEEEEeCCCChHHHHHHHHHHh
Q 029191 163 QLWKDGKKQAEVIGGHKSYLVINEVREMI 191 (197)
Q Consensus 163 ~~~~~G~~v~~~~G~~~~~~l~~~i~~~l 191 (197)
++|++|+.+.++.|..+.+++.+.|.+.|
T Consensus 80 ~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 80 LLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 99999999999999988865555555443
No 20
>PRK10996 thioredoxin 2; Provisional
Probab=99.88 E-value=1.8e-21 Score=144.92 Aligned_cols=98 Identities=28% Similarity=0.471 Sum_probs=88.8
Q ss_pred ChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcC
Q 029191 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKD 167 (197)
Q Consensus 88 s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~ 167 (197)
+.++|++++ +++++++|+|||+||++|+.+.|.+.++++++.+++.++++|+++++ +++++|+|.++||+++|++
T Consensus 41 ~~~~~~~~i----~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~-~l~~~~~V~~~Ptlii~~~ 115 (139)
T PRK10996 41 TGETLDKLL----QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAER-ELSARFRIRSIPTIMIFKN 115 (139)
T ss_pred CHHHHHHHH----hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCH-HHHHhcCCCccCEEEEEEC
Confidence 468999988 77999999999999999999999999999998778999999999998 7999999999999999999
Q ss_pred CeEEEEEeCCCChHHHHHHHHHH
Q 029191 168 GKKQAEVIGGHKSYLVINEVREM 190 (197)
Q Consensus 168 G~~v~~~~G~~~~~~l~~~i~~~ 190 (197)
|+.+.++.|..+.+.+.++|.+.
T Consensus 116 G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 116 GQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHh
Confidence 99999999999886666665543
No 21
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.8e-22 Score=158.15 Aligned_cols=104 Identities=30% Similarity=0.568 Sum_probs=92.8
Q ss_pred CeeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCE
Q 029191 82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPT 161 (197)
Q Consensus 82 ~v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt 161 (197)
.|..|.+..+|+..+.. ...+.|+|+|+|+|||||++++|+++.++.+| ++.+|++||+|+.. ..+..+||.+.||
T Consensus 2 ~Vi~v~~d~df~~~ls~--ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankY-p~aVFlkVdVd~c~-~taa~~gV~amPT 77 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSA--AGGKLVVVDFTASWCGPCKRIAPIFSDLANKY-PGAVFLKVDVDECR-GTAATNGVNAMPT 77 (288)
T ss_pred CeEEecCcHHHHHhhhc--cCceEEEEEEEecccchHHhhhhHHHHhhhhC-cccEEEEEeHHHhh-chhhhcCcccCce
Confidence 57889999999999976 44899999999999999999999999999999 99999999999998 6999999999999
Q ss_pred EEEEcCCeEEEEEeCCCChHHHHHHHHHHhhcc
Q 029191 162 IQLWKDGKKQAEVIGGHKSYLVINEVREMIGNE 194 (197)
Q Consensus 162 ~~~~~~G~~v~~~~G~~~~~~l~~~i~~~l~~~ 194 (197)
+++|+||.+++++.|.... .|++++++|
T Consensus 78 Fiff~ng~kid~~qGAd~~-----gLe~kv~~~ 105 (288)
T KOG0908|consen 78 FIFFRNGVKIDQIQGADAS-----GLEEKVAKY 105 (288)
T ss_pred EEEEecCeEeeeecCCCHH-----HHHHHHHHH
Confidence 9999999999999997664 445444444
No 22
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.87 E-value=1.3e-21 Score=139.26 Aligned_cols=91 Identities=16% Similarity=0.250 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEecCC--CHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEc
Q 029191 89 ESQFDRVIAEAQQLDESVIIVWMASW--CRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWK 166 (197)
Q Consensus 89 ~~~f~~~~~~a~~~~~~vvV~F~a~w--C~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~ 166 (197)
..+|++.+ +.+.+++|.|||+| |++|+.+.|.+++++++|.+.+.|+++|+++++ +++.+|+|+++||+++|+
T Consensus 17 ~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~-~la~~f~V~sIPTli~fk 91 (111)
T cd02965 17 AATLDDWL----AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ-ALAARFGVLRTPALLFFR 91 (111)
T ss_pred cccHHHHH----hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH-HHHHHcCCCcCCEEEEEE
Confidence 58899888 78999999999997 999999999999999999777999999999998 899999999999999999
Q ss_pred CCeEEEEEeCCCChHHHH
Q 029191 167 DGKKQAEVIGGHKSYLVI 184 (197)
Q Consensus 167 ~G~~v~~~~G~~~~~~l~ 184 (197)
+|+.+.+..|..+.+++.
T Consensus 92 dGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 92 DGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred CCEEEEEEeCccCHHHHh
Confidence 999999999999986554
No 23
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.87 E-value=2.4e-21 Score=137.67 Aligned_cols=99 Identities=22% Similarity=0.465 Sum_probs=85.0
Q ss_pred eecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCC--ChHHHHHHcCCCCCCE
Q 029191 84 TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA--VPHKLVARAGVMKMPT 161 (197)
Q Consensus 84 ~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~--~~~~l~~~~~i~~~Pt 161 (197)
.+++ .++|++.+. +++++++|.|||+||++|+.+.|.++++++.+.+.+.++.+|++. +. +++++|+|.++||
T Consensus 3 ~~l~-~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~-~~~~~~~i~~~Pt 77 (109)
T cd03002 3 YELT-PKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNK-PLCGKYGVQGFPT 77 (109)
T ss_pred EEcc-hhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccH-HHHHHcCCCcCCE
Confidence 3444 588999886 678899999999999999999999999999997779999999998 65 7999999999999
Q ss_pred EEEEcCCe-----EEEEEeCCCChHHHHHHH
Q 029191 162 IQLWKDGK-----KQAEVIGGHKSYLVINEV 187 (197)
Q Consensus 162 ~~~~~~G~-----~v~~~~G~~~~~~l~~~i 187 (197)
+++|++|+ ....+.|..+.+.|.++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 78 LKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 99998885 456888999986555544
No 24
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.87 E-value=2.9e-21 Score=135.52 Aligned_cols=91 Identities=27% Similarity=0.490 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCC---CeEEEEEECCCChHHHHHHcCCCCCCEEEEE
Q 029191 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP---RLRFYNVDVNAVPHKLVARAGVMKMPTIQLW 165 (197)
Q Consensus 89 ~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~ 165 (197)
.++|+..+ ..+ +++|.|||+||++|+.+.|.++++++++++ ++.++++|++.+. .++++|+|.++||+++|
T Consensus 7 ~~~f~~~~----~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~ 80 (102)
T cd03005 7 EDNFDHHI----AEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR-ELCSEFQVRGYPTLLLF 80 (102)
T ss_pred HHHHHHHh----hcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh-hhHhhcCCCcCCEEEEE
Confidence 68899998 444 599999999999999999999999999854 6999999999998 79999999999999999
Q ss_pred cCCeEEEEEeCCCChHHHHH
Q 029191 166 KDGKKQAEVIGGHKSYLVIN 185 (197)
Q Consensus 166 ~~G~~v~~~~G~~~~~~l~~ 185 (197)
++|+.+.++.|..+.+.+.+
T Consensus 81 ~~g~~~~~~~G~~~~~~l~~ 100 (102)
T cd03005 81 KDGEKVDKYKGTRDLDSLKE 100 (102)
T ss_pred eCCCeeeEeeCCCCHHHHHh
Confidence 99998889999999854443
No 25
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.87 E-value=4.4e-21 Score=134.77 Aligned_cols=96 Identities=28% Similarity=0.393 Sum_probs=80.9
Q ss_pred eeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCChHHHHHHcCCCCCCE
Q 029191 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVPHKLVARAGVMKMPT 161 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~~~l~~~~~i~~~Pt 161 (197)
+..++ .++|++++ .. . ++|+|||+||++|+.+.|.|+++++.+. .++.++++|+++++ +++++|+|+++||
T Consensus 3 v~~l~-~~~f~~~~----~~-~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~-~~~~~~~i~~~Pt 74 (101)
T cd02994 3 VVELT-DSNWTLVL----EG-E-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEP-GLSGRFFVTALPT 74 (101)
T ss_pred eEEcC-hhhHHHHh----CC-C-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCH-hHHHHcCCcccCE
Confidence 44554 68999877 32 2 7899999999999999999999999874 46999999999998 7999999999999
Q ss_pred EEEEcCCeEEEEEeCCCChHHHHHHH
Q 029191 162 IQLWKDGKKQAEVIGGHKSYLVINEV 187 (197)
Q Consensus 162 ~~~~~~G~~v~~~~G~~~~~~l~~~i 187 (197)
+++|++|+. .++.|..+.+.+.++|
T Consensus 75 ~~~~~~g~~-~~~~G~~~~~~l~~~i 99 (101)
T cd02994 75 IYHAKDGVF-RRYQGPRDKEDLISFI 99 (101)
T ss_pred EEEeCCCCE-EEecCCCCHHHHHHHH
Confidence 999999974 7899999885444443
No 26
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.3e-22 Score=173.14 Aligned_cols=129 Identities=19% Similarity=0.356 Sum_probs=98.1
Q ss_pred hHHHhhhhcCCcccccCCCCCCCCC-CccCeeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHh
Q 029191 54 NVIRVTKHEGSIKELNEDDDDDHAP-VSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADY 132 (197)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~ 132 (197)
.+...+..+...+.+++.+.++.+. .++.+.. +++|++++. +.+|.|+|.|||||||||++++|+|++|++.|
T Consensus 340 ~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvV---gknfd~iv~---de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~ 413 (493)
T KOG0190|consen 340 SFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVV---GKNFDDIVL---DEGKDVLVEFYAPWCGHCKALAPIYEELAEKY 413 (493)
T ss_pred HHHHHHhcCccccccccCCCCcccccCCeEEEe---ecCHHHHhh---ccccceEEEEcCcccchhhhhhhHHHHHHHHh
Confidence 3333333444444555555444332 3333333 799999987 89999999999999999999999999999999
Q ss_pred C--CCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCe--EEEEEeCCCChHHHHHHHHHHhhccC
Q 029191 133 H--PRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGK--KQAEVIGGHKSYLVINEVREMIGNEN 195 (197)
Q Consensus 133 ~--~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~--~v~~~~G~~~~~~l~~~i~~~l~~~~ 195 (197)
+ +++.|++||++.|+ .....+.++|||++|+.|. ....|.|.++. +.+..+++++.
T Consensus 414 ~~~~~vviAKmDaTaNd---~~~~~~~~fPTI~~~pag~k~~pv~y~g~R~l----e~~~~fi~~~a 473 (493)
T KOG0190|consen 414 KDDENVVIAKMDATAND---VPSLKVDGFPTILFFPAGHKSNPVIYNGDRTL----EDLKKFIKKSA 473 (493)
T ss_pred cCCCCcEEEEecccccc---CccccccccceEEEecCCCCCCCcccCCCcch----HHHHhhhccCC
Confidence 4 57999999999997 5566888899999999876 36688999998 56666666654
No 27
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.87 E-value=3.6e-21 Score=136.99 Aligned_cols=85 Identities=19% Similarity=0.308 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCC
Q 029191 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDG 168 (197)
Q Consensus 89 ~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G 168 (197)
.++|++.+.+ ..+++|||.|+|+||++|+.+.|.+++++++|.+.+.|++||+|+.+ +++++|+|.+.||++||++|
T Consensus 2 ~~~~d~~i~~--~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~-dva~~y~I~amPtfvffkng 78 (114)
T cd02986 2 KKEVDQAIKS--TAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVP-VYTQYFDISYIPSTIFFFNG 78 (114)
T ss_pred HHHHHHHHHh--cCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccH-HHHHhcCceeCcEEEEEECC
Confidence 4778888875 36999999999999999999999999999999333999999999999 89999999999999999999
Q ss_pred eEEEEEeC
Q 029191 169 KKQAEVIG 176 (197)
Q Consensus 169 ~~v~~~~G 176 (197)
+.+.--.|
T Consensus 79 kh~~~d~g 86 (114)
T cd02986 79 QHMKVDYG 86 (114)
T ss_pred cEEEEecC
Confidence 87643333
No 28
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.86 E-value=2.9e-21 Score=138.89 Aligned_cols=92 Identities=24% Similarity=0.454 Sum_probs=81.2
Q ss_pred CeeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCE
Q 029191 82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPT 161 (197)
Q Consensus 82 ~v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt 161 (197)
.+.++++ ++|.+.+.+. +.+++++|+||||||++|+.+.|.++++++++ +++.|++||++++ +++++|+|.++||
T Consensus 5 ~v~~i~~-~~f~~~i~~~-~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~-~~v~f~~vd~~~~--~l~~~~~i~~~Pt 79 (113)
T cd02957 5 EVREISS-KEFLEEVTKA-SKGTRVVVHFYEPGFPRCKILDSHLEELAAKY-PETKFVKINAEKA--FLVNYLDIKVLPT 79 (113)
T ss_pred eEEEEcH-HHHHHHHHcc-CCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEEchhh--HHHHhcCCCcCCE
Confidence 4677776 8999888531 12489999999999999999999999999999 7899999999987 6999999999999
Q ss_pred EEEEcCCeEEEEEeCCC
Q 029191 162 IQLWKDGKKQAEVIGGH 178 (197)
Q Consensus 162 ~~~~~~G~~v~~~~G~~ 178 (197)
+++|++|+.+.++.|..
T Consensus 80 ~~~f~~G~~v~~~~G~~ 96 (113)
T cd02957 80 LLVYKNGELIDNIVGFE 96 (113)
T ss_pred EEEEECCEEEEEEecHH
Confidence 99999999999998844
No 29
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.86 E-value=1e-20 Score=131.68 Aligned_cols=89 Identities=19% Similarity=0.521 Sum_probs=80.1
Q ss_pred ChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcC
Q 029191 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKD 167 (197)
Q Consensus 88 s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~ 167 (197)
|.++|++.+.. ..+++++|.||++||++|+.+.|.++++++++.+++.++++|+++.+ +++++|+|+++||+++|++
T Consensus 1 s~~~~~~~~~~--~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~-~~~~~~~i~~~Pt~~~~~~ 77 (97)
T cd02984 1 SEEEFEELLKS--DASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP-EISEKFEITAVPTFVFFRN 77 (97)
T ss_pred CHHHHHHHHhh--CCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCH-HHHHhcCCccccEEEEEEC
Confidence 35789998864 22699999999999999999999999999996578999999999988 7999999999999999999
Q ss_pred CeEEEEEeCCCC
Q 029191 168 GKKQAEVIGGHK 179 (197)
Q Consensus 168 G~~v~~~~G~~~ 179 (197)
|+.+.+..|...
T Consensus 78 g~~~~~~~g~~~ 89 (97)
T cd02984 78 GTIVDRVSGADP 89 (97)
T ss_pred CEEEEEEeCCCH
Confidence 999999999654
No 30
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.86 E-value=1.1e-20 Score=141.26 Aligned_cols=102 Identities=17% Similarity=0.412 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh-HHHHHHcCCCCCCEEEEEc-
Q 029191 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP-HKLVARAGVMKMPTIQLWK- 166 (197)
Q Consensus 89 ~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~l~~~~~i~~~Pt~~~~~- 166 (197)
..+|+.++ ..++++||+|||+||++|+.+.|.++++++++.+++.|+.||++... ..++++|+|.++||+++|+
T Consensus 10 ~~~~~~a~----~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~ 85 (142)
T cd02950 10 STPPEVAL----SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDR 85 (142)
T ss_pred cCCHHHHH----hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECC
Confidence 35677777 78999999999999999999999999999999767889999988653 2689999999999999995
Q ss_pred CCeEEEEEeCCCChHHHHHHHHHHhhcc
Q 029191 167 DGKKQAEVIGGHKSYLVINEVREMIGNE 194 (197)
Q Consensus 167 ~G~~v~~~~G~~~~~~l~~~i~~~l~~~ 194 (197)
+|+.+.++.|....+++.+.|.++++..
T Consensus 86 ~G~~v~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 86 EGNEEGQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred CCCEEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 8999999999999988888888887654
No 31
>PTZ00051 thioredoxin; Provisional
Probab=99.86 E-value=7.3e-21 Score=132.79 Aligned_cols=91 Identities=24% Similarity=0.615 Sum_probs=84.2
Q ss_pred eeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEE
Q 029191 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~ 162 (197)
+..+.+.++|++++ +.+++++|.||++||++|+.+.|.++++++++ +++.++.+|++++. .++++|+|.++||+
T Consensus 2 v~~i~~~~~~~~~~----~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~ 75 (98)
T PTZ00051 2 VHIVTSQAEFESTL----SQNELVIVDFYAEWCGPCKRIAPFYEECSKEY-TKMVFVKVDVDELS-EVAEKENITSMPTF 75 (98)
T ss_pred eEEecCHHHHHHHH----hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHc-CCcEEEEEECcchH-HHHHHCCCceeeEE
Confidence 56778889999998 77999999999999999999999999999998 77999999999987 79999999999999
Q ss_pred EEEcCCeEEEEEeCCCC
Q 029191 163 QLWKDGKKQAEVIGGHK 179 (197)
Q Consensus 163 ~~~~~G~~v~~~~G~~~ 179 (197)
++|++|+.+.++.|...
T Consensus 76 ~~~~~g~~~~~~~G~~~ 92 (98)
T PTZ00051 76 KVFKNGSVVDTLLGAND 92 (98)
T ss_pred EEEeCCeEEEEEeCCCH
Confidence 99999999999999644
No 32
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.86 E-value=1.9e-20 Score=130.51 Aligned_cols=98 Identities=29% Similarity=0.638 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCC
Q 029191 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDG 168 (197)
Q Consensus 89 ~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G 168 (197)
.++|.+.+. +.+++++|.||++||++|+.+.|.++++++++.+++.++.+|++.++ .++++|+|.++||+++|++|
T Consensus 3 ~~~~~~~~~---~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~P~~~~~~~g 78 (101)
T TIGR01068 3 DANFDETIA---SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENP-DIAAKYGIRSIPTLLLFKNG 78 (101)
T ss_pred HHHHHHHHh---hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCH-HHHHHcCCCcCCEEEEEeCC
Confidence 578888885 45779999999999999999999999999999668999999999998 79999999999999999999
Q ss_pred eEEEEEeCCCChHHHHHHHHHH
Q 029191 169 KKQAEVIGGHKSYLVINEVREM 190 (197)
Q Consensus 169 ~~v~~~~G~~~~~~l~~~i~~~ 190 (197)
+.+.++.|..+.+.+.++|++.
T Consensus 79 ~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 79 KEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred cEeeeecCCCCHHHHHHHHHhh
Confidence 9988999999886666666543
No 33
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.85 E-value=1.3e-20 Score=132.34 Aligned_cols=100 Identities=23% Similarity=0.495 Sum_probs=85.7
Q ss_pred eeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEE
Q 029191 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~ 162 (197)
+.+++ .++|++.+. +.+++++|.||++||++|+.+.|.|.++++++.+.+.++.+|+++++ +++++|+|+++||+
T Consensus 2 v~~l~-~~~~~~~i~---~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~i~~~P~~ 76 (103)
T cd03001 2 VVELT-DSNFDKKVL---NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQ-SLAQQYGVRGFPTI 76 (103)
T ss_pred eEEcC-HHhHHHHHh---cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchH-HHHHHCCCCccCEE
Confidence 34443 688998885 55778999999999999999999999999999778999999999998 79999999999999
Q ss_pred EEEcCC-eEEEEEeCCCChHHHHHHH
Q 029191 163 QLWKDG-KKQAEVIGGHKSYLVINEV 187 (197)
Q Consensus 163 ~~~~~G-~~v~~~~G~~~~~~l~~~i 187 (197)
++|++| .....+.|..+.+.+.+++
T Consensus 77 ~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 77 KVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred EEECCCCcceeecCCCCCHHHHHHHh
Confidence 999988 4566889999886555543
No 34
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.85 E-value=1.7e-20 Score=131.98 Aligned_cols=98 Identities=20% Similarity=0.430 Sum_probs=84.8
Q ss_pred eeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhC--CCeEEEEEECCC--ChHHHHHHcCCCC
Q 029191 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH--PRLRFYNVDVNA--VPHKLVARAGVMK 158 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~~~--~~~~l~~~~~i~~ 158 (197)
+.+++ ..+|+..+ +.+++++|.|||+||++|+.+.|.+.++++.+. +.+.++++|++. ++ .++++|+|++
T Consensus 2 ~~~l~-~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~i~~ 75 (104)
T cd02997 2 VVHLT-DEDFRKFL----KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHD-ALKEEYNVKG 75 (104)
T ss_pred eEEec-hHhHHHHH----hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccH-HHHHhCCCcc
Confidence 34454 57899988 567799999999999999999999999999885 568999999998 66 7999999999
Q ss_pred CCEEEEEcCCeEEEEEeCCCChHHHHHH
Q 029191 159 MPTIQLWKDGKKQAEVIGGHKSYLVINE 186 (197)
Q Consensus 159 ~Pt~~~~~~G~~v~~~~G~~~~~~l~~~ 186 (197)
+||+++|++|+.+.++.|..+.+.+.++
T Consensus 76 ~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 103 (104)
T cd02997 76 FPTFKYFENGKFVEKYEGERTAEDIIEF 103 (104)
T ss_pred ccEEEEEeCCCeeEEeCCCCCHHHHHhh
Confidence 9999999999988899999988555443
No 35
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.85 E-value=1.8e-20 Score=144.67 Aligned_cols=112 Identities=17% Similarity=0.244 Sum_probs=92.5
Q ss_pred CccCeeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCC
Q 029191 79 VSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMK 158 (197)
Q Consensus 79 ~~~~v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~ 158 (197)
....+.+|++.++|.+.+..+ ..+.+|||+||++||++|+.+.|.|++|+++| +.+.|++||+++. +++.+|+|.+
T Consensus 60 ~~g~v~ei~~~~~f~~~v~~~-~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~-~~vkF~kVd~d~~--~l~~~f~v~~ 135 (175)
T cd02987 60 RFGKVYELDSGEQFLDAIDKE-GKDTTVVVHIYEPGIPGCAALNSSLLCLAAEY-PAVKFCKIRASAT--GASDEFDTDA 135 (175)
T ss_pred CCCeEEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCchHHHHHHHHHHHHHHC-CCeEEEEEeccch--hhHHhCCCCC
Confidence 355688888879999988632 23469999999999999999999999999999 7899999999986 5899999999
Q ss_pred CCEEEEEcCCeEEEEEeCCCC---hHHHHHHHHHHhhcc
Q 029191 159 MPTIQLWKDGKKQAEVIGGHK---SYLVINEVREMIGNE 194 (197)
Q Consensus 159 ~Pt~~~~~~G~~v~~~~G~~~---~~~l~~~i~~~l~~~ 194 (197)
+||+++|++|+.+.++.|... .+...+.|+.+|.++
T Consensus 136 vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 136 LPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred CCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 999999999999988887443 233445666666553
No 36
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.85 E-value=2.1e-20 Score=149.07 Aligned_cols=109 Identities=17% Similarity=0.331 Sum_probs=93.7
Q ss_pred eeecCChhHHHHHHHHH-hcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCE
Q 029191 83 LTPIGSESQFDRVIAEA-QQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPT 161 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a-~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt 161 (197)
+.+++ .++|++.+... +..+++++|+||||||++|+.+.|.|+++++++++.+.++++|+++++ +++++|+|+++||
T Consensus 32 Vv~Lt-~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~-~l~~~~~I~~~PT 109 (224)
T PTZ00443 32 LVLLN-DKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRAL-NLAKRFAIKGYPT 109 (224)
T ss_pred cEECC-HHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH-HHHHHcCCCcCCE
Confidence 55554 68999988532 123689999999999999999999999999999778999999999998 7999999999999
Q ss_pred EEEEcCCeEEEEEeCCCChHHHHHHHHHHhhc
Q 029191 162 IQLWKDGKKQAEVIGGHKSYLVINEVREMIGN 193 (197)
Q Consensus 162 ~~~~~~G~~v~~~~G~~~~~~l~~~i~~~l~~ 193 (197)
+++|++|+.+....|..+.+.+.+++.+.+.+
T Consensus 110 l~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~ 141 (224)
T PTZ00443 110 LLLFDKGKMYQYEGGDRSTEKLAAFALGDFKK 141 (224)
T ss_pred EEEEECCEEEEeeCCCCCHHHHHHHHHHHHHh
Confidence 99999999887778889998887777766543
No 37
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.85 E-value=3.6e-20 Score=139.59 Aligned_cols=91 Identities=19% Similarity=0.454 Sum_probs=80.7
Q ss_pred CeeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCChHHHHHHcCCCC--
Q 029191 82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVPHKLVARAGVMK-- 158 (197)
Q Consensus 82 ~v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~~~l~~~~~i~~-- 158 (197)
.+.+++ .++|++.+.. ..+++++|+|||+||++|+.+.|.+++++++++ .++.|++||+++++ +++++|+|++
T Consensus 29 ~v~~l~-~~~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~-~la~~~~V~~~~ 104 (152)
T cd02962 29 HIKYFT-PKTLEEELER--DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP-NVAEKFRVSTSP 104 (152)
T ss_pred ccEEcC-HHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH-HHHHHcCceecC
Confidence 455555 5889988753 457899999999999999999999999999985 46999999999998 7999999988
Q ss_pred ----CCEEEEEcCCeEEEEEeC
Q 029191 159 ----MPTIQLWKDGKKQAEVIG 176 (197)
Q Consensus 159 ----~Pt~~~~~~G~~v~~~~G 176 (197)
+||+++|++|+++.++.|
T Consensus 105 ~v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 105 LSKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CcCCCCEEEEEECCEEEEEEec
Confidence 999999999999999997
No 38
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.84 E-value=2.4e-20 Score=130.45 Aligned_cols=95 Identities=32% Similarity=0.595 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCC--CeEEEEEECCCChHHHHHHcCCCCCCEEEEEc
Q 029191 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP--RLRFYNVDVNAVPHKLVARAGVMKMPTIQLWK 166 (197)
Q Consensus 89 ~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~ 166 (197)
.++|++.+ .++++++|.||++||++|+.+.|.|+++++.+.+ ++.++.+|++++. +++++|+|.++|++++|+
T Consensus 3 ~~~~~~~~----~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~P~~~~~~ 77 (102)
T TIGR01126 3 ASNFDDIV----LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK-DLASRFGVSGFPTIKFFP 77 (102)
T ss_pred hhhHHHHh----ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchH-HHHHhCCCCcCCEEEEec
Confidence 67899998 6799999999999999999999999999999854 6999999999998 799999999999999999
Q ss_pred CCeEEEEEeCCCChHHHHHHHH
Q 029191 167 DGKKQAEVIGGHKSYLVINEVR 188 (197)
Q Consensus 167 ~G~~v~~~~G~~~~~~l~~~i~ 188 (197)
+|+.+.++.|..+.+.+..+|+
T Consensus 78 ~~~~~~~~~g~~~~~~l~~~i~ 99 (102)
T TIGR01126 78 KGKKPVDYEGGRDLEAIVEFVN 99 (102)
T ss_pred CCCcceeecCCCCHHHHHHHHH
Confidence 8876778999988855444444
No 39
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.83 E-value=1.1e-19 Score=127.13 Aligned_cols=92 Identities=22% Similarity=0.459 Sum_probs=81.6
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEE
Q 029191 92 FDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 92 f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v 171 (197)
++..+. +.+++++|.||++||++|+.+.|.++++++++++++.++++|+++++ ++..+++|.++||+++|++|+.+
T Consensus 5 ~~~~~~---~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~-~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 5 LRKLYH---ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQ-EIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred HHHHHH---hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCH-HHHHHCCCeeccEEEEEECCeEE
Confidence 344454 67999999999999999999999999999999778999999999998 79999999999999999999999
Q ss_pred EEEeCCCChHHHHHHH
Q 029191 172 AEVIGGHKSYLVINEV 187 (197)
Q Consensus 172 ~~~~G~~~~~~l~~~i 187 (197)
.++.|..+.+.+.++|
T Consensus 81 ~~~~g~~~~~~~~~~l 96 (97)
T cd02949 81 KEISGVKMKSEYREFI 96 (97)
T ss_pred EEEeCCccHHHHHHhh
Confidence 9999999985544443
No 40
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.83 E-value=2.2e-20 Score=132.00 Aligned_cols=94 Identities=15% Similarity=0.284 Sum_probs=80.4
Q ss_pred hHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHH---HHHHHHhCCCeEEEEEECCCCh---HHHHHHcCCCCCCEEE
Q 029191 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVP---HKLVARAGVMKMPTIQ 163 (197)
Q Consensus 90 ~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~---~~l~~~~~i~~~Pt~~ 163 (197)
++|++++ +++++++|.|||+||++|+.+.|.+ +++++.+++++.++.+|+++++ .+++++|+|.++||++
T Consensus 2 ~~~~~~~----~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 2 AALAQAL----AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred HHHHHHH----HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 5677777 7899999999999999999999988 6888888558999999998742 2789999999999999
Q ss_pred EEc--CCeEEEEEeCCCChHHHHHHH
Q 029191 164 LWK--DGKKQAEVIGGHKSYLVINEV 187 (197)
Q Consensus 164 ~~~--~G~~v~~~~G~~~~~~l~~~i 187 (197)
+|+ +|+.+.++.|..+.+.+.+.|
T Consensus 78 ~~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 78 FYGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred EECCCCCCCCcccccccCHHHHHHHh
Confidence 998 788888999999995544443
No 41
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.83 E-value=8.9e-20 Score=129.04 Aligned_cols=94 Identities=21% Similarity=0.412 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhC---CCeEEEEEECCCChHHHHHHcCCCCCCEEEEE
Q 029191 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNAVPHKLVARAGVMKMPTIQLW 165 (197)
Q Consensus 89 ~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~ 165 (197)
.++|+++ .++++++|.|||+||++|+.+.|.|++++++++ ..+.++++|++..+ +++++|+|.++||+++|
T Consensus 6 ~~~~~~~-----~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~I~~~Pt~~l~ 79 (104)
T cd03000 6 DDSFKDV-----RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS-SIASEFGVRGYPTIKLL 79 (104)
T ss_pred hhhhhhh-----ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH-hHHhhcCCccccEEEEE
Confidence 4677774 347799999999999999999999999999983 35999999999987 79999999999999999
Q ss_pred cCCeEEEEEeCCCChHHHHHHHHH
Q 029191 166 KDGKKQAEVIGGHKSYLVINEVRE 189 (197)
Q Consensus 166 ~~G~~v~~~~G~~~~~~l~~~i~~ 189 (197)
++|. ..++.|..+.+.+.+++++
T Consensus 80 ~~~~-~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 80 KGDL-AYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred cCCC-ceeecCCCCHHHHHHHHHh
Confidence 8774 4678898888655555544
No 42
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.3e-20 Score=161.77 Aligned_cols=102 Identities=21% Similarity=0.464 Sum_probs=91.8
Q ss_pred eeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhC---CCeEEEEEECCCChHHHHHHcCCCCC
Q 029191 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNAVPHKLVARAGVMKM 159 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~~v~~~~vd~~~~~~~l~~~~~i~~~ 159 (197)
|.+++ .++|+..+ ..+..++|.||||||+||++++|.+++.|..+. +.+.+++||++++. ++|.+|+|+++
T Consensus 27 Vl~Lt-~dnf~~~i----~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~-~~~~~y~v~gy 100 (493)
T KOG0190|consen 27 VLVLT-KDNFKETI----NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEES-DLASKYEVRGY 100 (493)
T ss_pred eEEEe-cccHHHHh----ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhh-hhHhhhcCCCC
Confidence 44444 69999999 889999999999999999999999999998883 47999999999996 89999999999
Q ss_pred CEEEEEcCCeEEEEEeCCCChHHHHHHHHHH
Q 029191 160 PTIQLWKDGKKQAEVIGGHKSYLVINEVREM 190 (197)
Q Consensus 160 Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~~~ 190 (197)
||+.+|++|+....|.|.+..+.++.++++-
T Consensus 101 PTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq 131 (493)
T KOG0190|consen 101 PTLKIFRNGRSAQDYNGPREADGIVKWLKKQ 131 (493)
T ss_pred CeEEEEecCCcceeccCcccHHHHHHHHHhc
Confidence 9999999999877999999998888877653
No 43
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.83 E-value=9.7e-20 Score=127.93 Aligned_cols=97 Identities=24% Similarity=0.391 Sum_probs=82.2
Q ss_pred eecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCC--CeEEEEEECCCChHHHHHHcCCCCCCE
Q 029191 84 TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP--RLRFYNVDVNAVPHKLVARAGVMKMPT 161 (197)
Q Consensus 84 ~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~~~~~~~l~~~~~i~~~Pt 161 (197)
..++ .++|++.+. +.+++++|+|||+||++|+.+.|.|+++++.+.+ ++.++++|++.+ +++..+++.++||
T Consensus 3 ~~l~-~~~f~~~i~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~~Pt 76 (104)
T cd02995 3 KVVV-GKNFDEVVL---DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN--DVPSEFVVDGFPT 76 (104)
T ss_pred EEEc-hhhhHHHHh---CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch--hhhhhccCCCCCE
Confidence 3444 579999886 5679999999999999999999999999999843 699999999987 4788999999999
Q ss_pred EEEEcCCe--EEEEEeCCCChHHHHHH
Q 029191 162 IQLWKDGK--KQAEVIGGHKSYLVINE 186 (197)
Q Consensus 162 ~~~~~~G~--~v~~~~G~~~~~~l~~~ 186 (197)
+++|++|+ ...++.|..+.+.+.++
T Consensus 77 ~~~~~~~~~~~~~~~~g~~~~~~l~~f 103 (104)
T cd02995 77 ILFFPAGDKSNPIKYEGDRTLEDLIKF 103 (104)
T ss_pred EEEEcCCCcCCceEccCCcCHHHHHhh
Confidence 99999887 56789999888554443
No 44
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.82 E-value=1.6e-19 Score=128.98 Aligned_cols=101 Identities=12% Similarity=0.322 Sum_probs=80.6
Q ss_pred eeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCC-CeEEEEEECCCChHHHHH-HcCCCCCC
Q 029191 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLVA-RAGVMKMP 160 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~l~~-~~~i~~~P 160 (197)
|.+++ .++|+..+... .++++++|.|||+||++|+++.|.|+++++.+++ ++.++.||++.+...++. .++|+++|
T Consensus 3 v~~~~-~~~~~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~P 80 (109)
T cd02993 3 VVTLS-RAEIEALAKGE-RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFP 80 (109)
T ss_pred ceecc-HHHHHHHHhhh-hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCC
Confidence 44444 57899877422 4689999999999999999999999999999964 599999999984326776 49999999
Q ss_pred EEEEEcCC-eEEEEEeCC-CChHHHHH
Q 029191 161 TIQLWKDG-KKQAEVIGG-HKSYLVIN 185 (197)
Q Consensus 161 t~~~~~~G-~~v~~~~G~-~~~~~l~~ 185 (197)
|+++|++| .....|.|. ++.+.+..
T Consensus 81 ti~~f~~~~~~~~~y~g~~~~~~~l~~ 107 (109)
T cd02993 81 TILFFPKNSRQPIKYPSEQRDVDSLLM 107 (109)
T ss_pred EEEEEcCCCCCceeccCCCCCHHHHHh
Confidence 99999765 457788884 67754443
No 45
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.82 E-value=1.9e-19 Score=129.48 Aligned_cols=95 Identities=19% Similarity=0.301 Sum_probs=83.0
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEE
Q 029191 92 FDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 92 f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v 171 (197)
|.+.+ ..+..++|.|||+||++|+.+.|.++++++.+ +.+.+.++|+++++ +++.+|+|.++||+++|++|...
T Consensus 15 ~~~~l----~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~-~l~~~~~v~~vPt~~i~~~g~~~ 88 (113)
T cd02975 15 FFKEM----KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDK-EKAEKYGVERVPTTIFLQDGGKD 88 (113)
T ss_pred HHHHh----CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCH-HHHHHcCCCcCCEEEEEeCCeec
Confidence 44555 67888999999999999999999999999988 88999999999998 89999999999999999987654
Q ss_pred E--EEeCCCChHHHHHHHHHHhh
Q 029191 172 A--EVIGGHKSYLVINEVREMIG 192 (197)
Q Consensus 172 ~--~~~G~~~~~~l~~~i~~~l~ 192 (197)
. ++.|.....++.+.|..+++
T Consensus 89 ~~~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 89 GGIRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred ceEEEEecCchHHHHHHHHHHHh
Confidence 3 78899998888888777764
No 46
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.82 E-value=1.5e-19 Score=127.10 Aligned_cols=98 Identities=27% Similarity=0.531 Sum_probs=82.6
Q ss_pred eecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhC--CCeEEEEEECCC-ChHHHHHHcCCCCCC
Q 029191 84 TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH--PRLRFYNVDVNA-VPHKLVARAGVMKMP 160 (197)
Q Consensus 84 ~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~~~-~~~~l~~~~~i~~~P 160 (197)
..++ .++|++.+. +.+++++|.|||+||++|+.+.|.++++++.+. +++.++.+|++. ++ +++++|+|.++|
T Consensus 3 ~~l~-~~~~~~~~~---~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~~~~i~~~P 77 (105)
T cd02998 3 VELT-DSNFDKVVG---DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANK-DLAKKYGVSGFP 77 (105)
T ss_pred EEcc-hhcHHHHhc---CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcch-hhHHhCCCCCcC
Confidence 3444 578988774 456799999999999999999999999999985 569999999999 77 799999999999
Q ss_pred EEEEEcCC-eEEEEEeCCCChHHHHHH
Q 029191 161 TIQLWKDG-KKQAEVIGGHKSYLVINE 186 (197)
Q Consensus 161 t~~~~~~G-~~v~~~~G~~~~~~l~~~ 186 (197)
|+++|++| +....+.|..+.+.+.++
T Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~l~~~ 104 (105)
T cd02998 78 TLKFFPKGSTEPVKYEGGRDLEDLVKF 104 (105)
T ss_pred EEEEEeCCCCCccccCCccCHHHHHhh
Confidence 99999876 566788898888554443
No 47
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.80 E-value=4e-19 Score=123.13 Aligned_cols=92 Identities=28% Similarity=0.548 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHh--CCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEc
Q 029191 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADY--HPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWK 166 (197)
Q Consensus 89 ~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~--~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~ 166 (197)
.++|++.+ .++++++|.||++||++|+.+.|.|+++++.+ .+.+.++.+|++.+. .++++|+|.++||+++|+
T Consensus 5 ~~~~~~~i----~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02961 5 DDNFDELV----KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN-DLCSEYGVRGYPTIKLFP 79 (101)
T ss_pred HHHHHHHH----hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH-HHHHhCCCCCCCEEEEEc
Confidence 57899999 56679999999999999999999999999999 578999999999987 799999999999999998
Q ss_pred CC-eEEEEEeCCCChHHHHH
Q 029191 167 DG-KKQAEVIGGHKSYLVIN 185 (197)
Q Consensus 167 ~G-~~v~~~~G~~~~~~l~~ 185 (197)
+| +...++.|..+.+.+.+
T Consensus 80 ~~~~~~~~~~g~~~~~~i~~ 99 (101)
T cd02961 80 NGSKEPVKYEGPRTLESLVE 99 (101)
T ss_pred CCCcccccCCCCcCHHHHHh
Confidence 77 77788999888855444
No 48
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.80 E-value=1.4e-18 Score=126.73 Aligned_cols=101 Identities=13% Similarity=0.176 Sum_probs=85.0
Q ss_pred hHHHHHHHHHhcCC-CeEEEEEecCCCHhHHHhhHHHH---HHHHHhCCCeEEEEEECCCC------------hHHHHHH
Q 029191 90 SQFDRVIAEAQQLD-ESVIIVWMASWCRKCIYLKPKLE---KLAADYHPRLRFYNVDVNAV------------PHKLVAR 153 (197)
Q Consensus 90 ~~f~~~~~~a~~~~-~~vvV~F~a~wC~~C~~~~p~l~---~la~~~~~~v~~~~vd~~~~------------~~~l~~~ 153 (197)
++++++. +.+ ++++|.|||+||++|+.+.|.+. ++.+.+..++.++++|++.. ..+++.+
T Consensus 4 ~~~~~a~----~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~ 79 (125)
T cd02951 4 EDLAEAA----ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARK 79 (125)
T ss_pred HHHHHHH----HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHH
Confidence 4556666 678 99999999999999999999885 56666656789999999875 2378999
Q ss_pred cCCCCCCEEEEEcC--CeEEEEEeCCCChHHHHHHHHHHhhcc
Q 029191 154 AGVMKMPTIQLWKD--GKKQAEVIGGHKSYLVINEVREMIGNE 194 (197)
Q Consensus 154 ~~i~~~Pt~~~~~~--G~~v~~~~G~~~~~~l~~~i~~~l~~~ 194 (197)
|+|.++||++||.+ |+.+.++.|..+.+.+.+.|+.+++++
T Consensus 80 ~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~~ 122 (125)
T cd02951 80 YRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEKA 122 (125)
T ss_pred cCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhhh
Confidence 99999999999975 588899999999988888888887764
No 49
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.79 E-value=8e-19 Score=126.04 Aligned_cols=93 Identities=14% Similarity=0.134 Sum_probs=76.0
Q ss_pred ChhHHHHHHHHHhcCCCeEEEEEec--CCCH---hHHHhhHHHHHHHHHhCCCeEEEEEECC-----CChHHHHHHcCCC
Q 029191 88 SESQFDRVIAEAQQLDESVIIVWMA--SWCR---KCIYLKPKLEKLAADYHPRLRFYNVDVN-----AVPHKLVARAGVM 157 (197)
Q Consensus 88 s~~~f~~~~~~a~~~~~~vvV~F~a--~wC~---~C~~~~p~l~~la~~~~~~v~~~~vd~~-----~~~~~l~~~~~i~ 157 (197)
+..+|++++ .+++.+||.||| |||+ +|+.++|.+.+.+. .+.+++|||+ ++. +|+++|+|+
T Consensus 7 ~~~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~-~L~~~y~I~ 77 (116)
T cd03007 7 DTVTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNM-ELGERYKLD 77 (116)
T ss_pred ChhhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhH-HHHHHhCCC
Confidence 369999999 789999999999 9999 88888877766443 4899999994 454 799999999
Q ss_pred --CCCEEEEEcCCe--EEEEEeCC-CChHHHHHHHHH
Q 029191 158 --KMPTIQLWKDGK--KQAEVIGG-HKSYLVINEVRE 189 (197)
Q Consensus 158 --~~Pt~~~~~~G~--~v~~~~G~-~~~~~l~~~i~~ 189 (197)
++||+++|++|. ....|.|. ++.+.|.++|++
T Consensus 78 ~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 78 KESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKG 114 (116)
T ss_pred cCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHh
Confidence 999999999985 44688996 999655555543
No 50
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.78 E-value=5.4e-18 Score=123.49 Aligned_cols=94 Identities=18% Similarity=0.273 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh----------HHHHHHcC---
Q 029191 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP----------HKLVARAG--- 155 (197)
Q Consensus 89 ~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~----------~~l~~~~~--- 155 (197)
.++|.+.+ ++++.++|+||++|||+|+.+.|.+++++++ .++.++++|++.+. .++.+.|+
T Consensus 13 ~~~~~~~i----~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~ 86 (122)
T TIGR01295 13 VVRALEAL----DKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPT 86 (122)
T ss_pred HHHHHHHH----HcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcc
Confidence 57899999 7799999999999999999999999999998 45778999998542 14556665
Q ss_pred -CCCCCEEEEEcCCeEEEEEeCCC-ChHHHHHHHHHHhh
Q 029191 156 -VMKMPTIQLWKDGKKQAEVIGGH-KSYLVINEVREMIG 192 (197)
Q Consensus 156 -i~~~Pt~~~~~~G~~v~~~~G~~-~~~~l~~~i~~~l~ 192 (197)
|.++||+++|++|+.+.+..|.. +. +.|.+++.
T Consensus 87 ~i~~~PT~v~~k~Gk~v~~~~G~~~~~----~~l~~~~~ 121 (122)
T TIGR01295 87 SFMGTPTFVHITDGKQVSVRCGSSTTA----QELQDIAA 121 (122)
T ss_pred cCCCCCEEEEEeCCeEEEEEeCCCCCH----HHHHHHhh
Confidence 55699999999999999999954 45 56665553
No 51
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.78 E-value=2.5e-18 Score=134.38 Aligned_cols=108 Identities=18% Similarity=0.277 Sum_probs=85.5
Q ss_pred CccCeeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCC
Q 029191 79 VSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMK 158 (197)
Q Consensus 79 ~~~~v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~ 158 (197)
.-+.+.+++ .++|...+..+ +.+.+|||+||++||++|+.+.|.|++|+++| +.+.|++||++.. ...|+|.+
T Consensus 80 ~~G~v~eis-~~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~-~~vkFvkI~ad~~----~~~~~i~~ 152 (192)
T cd02988 80 KFGEVYEIS-KPDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLNQHLSELARKF-PDTKFVKIISTQC----IPNYPDKN 152 (192)
T ss_pred CCCeEEEeC-HHHHHHHHHhc-CCCCEEEEEEECCCCchHHHHHHHHHHHHHHC-CCCEEEEEEhHHh----HhhCCCCC
Confidence 445677775 57888766532 23569999999999999999999999999999 7899999999743 57999999
Q ss_pred CCEEEEEcCCeEEEEEeCCCCh---HHHHHHHHHHhhc
Q 029191 159 MPTIQLWKDGKKQAEVIGGHKS---YLVINEVREMIGN 193 (197)
Q Consensus 159 ~Pt~~~~~~G~~v~~~~G~~~~---~~l~~~i~~~l~~ 193 (197)
+||+++|++|+.+.++.|.... ..-.+.|+.+|.+
T Consensus 153 lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 153 LPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred CCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 9999999999999999884322 2223556666544
No 52
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.78 E-value=5.5e-18 Score=115.19 Aligned_cols=90 Identities=31% Similarity=0.648 Sum_probs=79.9
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeE
Q 029191 91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKK 170 (197)
Q Consensus 91 ~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~ 170 (197)
+|+..+ ..+++++|.||++||++|+.+.+.++++++. .+++.++.+|++.+. +++++|++.++||+++|++|+.
T Consensus 2 ~~~~~~----~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~-~~~~~~~v~~~P~~~~~~~g~~ 75 (93)
T cd02947 2 EFEELI----KSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENP-ELAEEYGVRSIPTFLFFKNGKE 75 (93)
T ss_pred chHHHH----hcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCCh-hHHHhcCcccccEEEEEECCEE
Confidence 577777 5569999999999999999999999999998 489999999999987 7999999999999999999999
Q ss_pred EEEEeCCCChHHHHHH
Q 029191 171 QAEVIGGHKSYLVINE 186 (197)
Q Consensus 171 v~~~~G~~~~~~l~~~ 186 (197)
+..+.|..+.+.+.+.
T Consensus 76 ~~~~~g~~~~~~l~~~ 91 (93)
T cd02947 76 VDRVVGADPKEELEEF 91 (93)
T ss_pred EEEEecCCCHHHHHHH
Confidence 9999998887444443
No 53
>PTZ00102 disulphide isomerase; Provisional
Probab=99.77 E-value=4.1e-18 Score=149.75 Aligned_cols=134 Identities=16% Similarity=0.260 Sum_probs=101.1
Q ss_pred hhhHHHhhhhcCCcccccCCCCCCCCCCccCeeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHH
Q 029191 52 IDNVIRVTKHEGSIKELNEDDDDDHAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAAD 131 (197)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~ 131 (197)
+..+++.+..+.....+.+++.++.. ...+..+. .++|++.+. +++++|+|.|||+||++|+.+.|.|+++++.
T Consensus 330 l~~Fv~~~~~gk~~~~~~se~~p~~~--~~~v~~l~-~~~f~~~v~---~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~ 403 (477)
T PTZ00102 330 LIEFFKDVEAGKVEKSIKSEPIPEEQ--DGPVKVVV-GNTFEEIVF---KSDKDVLLEIYAPWCGHCKNLEPVYNELGEK 403 (477)
T ss_pred HHHHHHHHhCCCCCcccccCCCCCCC--CCCeEEec-ccchHHHHh---cCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 44455544445555555444433222 22344444 689998865 7799999999999999999999999999999
Q ss_pred hC--CCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEE-EEEeCCCChHHHHHHHHHHhh
Q 029191 132 YH--PRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQ-AEVIGGHKSYLVINEVREMIG 192 (197)
Q Consensus 132 ~~--~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v-~~~~G~~~~~~l~~~i~~~l~ 192 (197)
+. +.+.++++|++.+. ..+..++|+++||+++|++|+.+ .++.|..+.+.+.++|.+.+.
T Consensus 404 ~~~~~~v~~~~id~~~~~-~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 404 YKDNDSIIVAKMNGTANE-TPLEEFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHAT 466 (477)
T ss_pred hccCCcEEEEEEECCCCc-cchhcCCCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCC
Confidence 84 35999999999997 68899999999999999887664 589999999666666655443
No 54
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.76 E-value=9.5e-18 Score=145.98 Aligned_cols=106 Identities=11% Similarity=0.235 Sum_probs=84.9
Q ss_pred CeeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCC-CeEEEEEECCCChHHHH-HHcCCCCC
Q 029191 82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLV-ARAGVMKM 159 (197)
Q Consensus 82 ~v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~~l~-~~~~i~~~ 159 (197)
.|..++ .++|++.+... +.+++|||+||||||++|+.+.|.|+++++++.+ ++.|++||+|.+...++ ++|+|+++
T Consensus 352 ~Vv~L~-~~nf~~~v~~~-~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~ 429 (463)
T TIGR00424 352 NVVSLS-RPGIENLLKLE-ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF 429 (463)
T ss_pred CeEECC-HHHHHHHHhhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCcc
Confidence 455555 57999988411 5799999999999999999999999999999954 48999999997643354 68999999
Q ss_pred CEEEEEcCCe-EEEEEe-CCCChHHHHHHHHH
Q 029191 160 PTIQLWKDGK-KQAEVI-GGHKSYLVINEVRE 189 (197)
Q Consensus 160 Pt~~~~~~G~-~v~~~~-G~~~~~~l~~~i~~ 189 (197)
||+++|++|. ....|. |.++.+.|..+|+.
T Consensus 430 PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 430 PTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred ceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 9999999885 345676 57998766666554
No 55
>PTZ00102 disulphide isomerase; Provisional
Probab=99.76 E-value=1.2e-17 Score=146.86 Aligned_cols=103 Identities=26% Similarity=0.518 Sum_probs=91.0
Q ss_pred eeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhC---CCeEEEEEECCCChHHHHHHcCCCCC
Q 029191 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNAVPHKLVARAGVMKM 159 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~~v~~~~vd~~~~~~~l~~~~~i~~~ 159 (197)
+..++ .++|+..+ .+++.++|.|||+||++|+++.|.|+++++.+. +++.+++||++.+. +++++|+|.++
T Consensus 34 v~~l~-~~~f~~~i----~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~-~l~~~~~i~~~ 107 (477)
T PTZ00102 34 VTVLT-DSTFDKFI----TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM-ELAQEFGVRGY 107 (477)
T ss_pred cEEcc-hhhHHHHH----hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH-HHHHhcCCCcc
Confidence 44444 68999998 678899999999999999999999999998772 56999999999998 79999999999
Q ss_pred CEEEEEcCCeEEEEEeCCCChHHHHHHHHHHhh
Q 029191 160 PTIQLWKDGKKQAEVIGGHKSYLVINEVREMIG 192 (197)
Q Consensus 160 Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~~~l~ 192 (197)
||+++|++|+.+ ++.|.++.+.+.+++.+.+.
T Consensus 108 Pt~~~~~~g~~~-~y~g~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 108 PTIKFFNKGNPV-NYSGGRTADGIVSWIKKLTG 139 (477)
T ss_pred cEEEEEECCceE-EecCCCCHHHHHHHHHHhhC
Confidence 999999999877 99999999888888877654
No 56
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.76 E-value=1.1e-17 Score=120.51 Aligned_cols=84 Identities=25% Similarity=0.452 Sum_probs=70.8
Q ss_pred eeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhC---CCeEEEEEECCCCh-HHHHHHcCCCC
Q 029191 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNAVP-HKLVARAGVMK 158 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~~v~~~~vd~~~~~-~~l~~~~~i~~ 158 (197)
+.+++ .++|++.+. +.+++++|.|||+||++|+.+.|.|+++++.++ +.+.++++|++... .+++++|+|++
T Consensus 3 v~~l~-~~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~ 78 (114)
T cd02992 3 VIVLD-AASFNSALL---GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTG 78 (114)
T ss_pred eEECC-HHhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCC
Confidence 44444 689999986 556899999999999999999999999999873 35899999986432 27999999999
Q ss_pred CCEEEEEcCCeE
Q 029191 159 MPTIQLWKDGKK 170 (197)
Q Consensus 159 ~Pt~~~~~~G~~ 170 (197)
+||+++|++|..
T Consensus 79 ~Pt~~lf~~~~~ 90 (114)
T cd02992 79 YPTLRYFPPFSK 90 (114)
T ss_pred CCEEEEECCCCc
Confidence 999999998874
No 57
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.75 E-value=1.1e-17 Score=146.06 Aligned_cols=104 Identities=24% Similarity=0.541 Sum_probs=91.2
Q ss_pred eeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhC---CCeEEEEEECCCChHHHHHHcCCCCC
Q 029191 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNAVPHKLVARAGVMKM 159 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~~v~~~~vd~~~~~~~l~~~~~i~~~ 159 (197)
+..+ +.++|+.++ +++++++|.|||+||++|+.+.|.|.++++.+. +++.+++|||+.+. +++++|+|.++
T Consensus 3 v~~l-~~~~~~~~i----~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-~l~~~~~i~~~ 76 (462)
T TIGR01130 3 VLVL-TKDNFDDFI----KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK-DLAQKYGVSGY 76 (462)
T ss_pred ceEC-CHHHHHHHH----hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH-HHHHhCCCccc
Confidence 3344 468999999 678899999999999999999999999998873 35999999999998 79999999999
Q ss_pred CEEEEEcCCeE-EEEEeCCCChHHHHHHHHHHhh
Q 029191 160 PTIQLWKDGKK-QAEVIGGHKSYLVINEVREMIG 192 (197)
Q Consensus 160 Pt~~~~~~G~~-v~~~~G~~~~~~l~~~i~~~l~ 192 (197)
||+++|++|+. +.++.|..+.+.+.+++.+.+.
T Consensus 77 Pt~~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 77 PTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQSG 110 (462)
T ss_pred cEEEEEeCCccceeEecCCCCHHHHHHHHHHhcC
Confidence 99999999987 7899999999877777777654
No 58
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.75 E-value=1.4e-17 Score=120.45 Aligned_cols=85 Identities=18% Similarity=0.443 Sum_probs=73.2
Q ss_pred ecCChhHHHHHHHHHhcCCCeEEEEEec-------CCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh------HHHH
Q 029191 85 PIGSESQFDRVIAEAQQLDESVIIVWMA-------SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP------HKLV 151 (197)
Q Consensus 85 ~v~s~~~f~~~~~~a~~~~~~vvV~F~a-------~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~------~~l~ 151 (197)
.+.+.++|.+.+.. .++++|+|.||| +||++|+.+.|.++++++++.+++.|++||+++.+ +++.
T Consensus 5 ~~~~~~~f~~~i~~--~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~ 82 (119)
T cd02952 5 AVRGYEEFLKLLKS--HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFR 82 (119)
T ss_pred cccCHHHHHHHHHh--cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhH
Confidence 34567889988854 347899999999 99999999999999999999658999999998632 3789
Q ss_pred HHcCCC-CCCEEEEEcCCeEE
Q 029191 152 ARAGVM-KMPTIQLWKDGKKQ 171 (197)
Q Consensus 152 ~~~~i~-~~Pt~~~~~~G~~v 171 (197)
.+++|. ++||+++|++|+++
T Consensus 83 ~~~~I~~~iPT~~~~~~~~~l 103 (119)
T cd02952 83 TDPKLTTGVPTLLRWKTPQRL 103 (119)
T ss_pred hccCcccCCCEEEEEcCCcee
Confidence 999999 99999999888765
No 59
>PLN02309 5'-adenylylsulfate reductase
Probab=99.74 E-value=3.3e-17 Score=142.49 Aligned_cols=106 Identities=13% Similarity=0.291 Sum_probs=86.3
Q ss_pred CeeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECC-CChHHHHH-HcCCCC
Q 029191 82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVN-AVPHKLVA-RAGVMK 158 (197)
Q Consensus 82 ~v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~-~~~~~l~~-~~~i~~ 158 (197)
.++.++ .++|++.+... +.++++||+||||||++|+.+.|.|+++++++. .++.|+++|++ .+. +++. +|+|++
T Consensus 346 ~Vv~Lt-~~nfe~ll~~~-~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~-~la~~~~~I~~ 422 (457)
T PLN02309 346 NVVALS-RAGIENLLKLE-NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQK-EFAKQELQLGS 422 (457)
T ss_pred CcEECC-HHHHHHHHHhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcch-HHHHhhCCCce
Confidence 455555 58999887432 579999999999999999999999999999995 35999999999 555 6886 699999
Q ss_pred CCEEEEEcCCe-EEEEEeC-CCChHHHHHHHHHH
Q 029191 159 MPTIQLWKDGK-KQAEVIG-GHKSYLVINEVREM 190 (197)
Q Consensus 159 ~Pt~~~~~~G~-~v~~~~G-~~~~~~l~~~i~~~ 190 (197)
+||+++|++|. ....|.| .++.+.|+.+|+++
T Consensus 423 ~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 423 FPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 99999998776 3456764 68887777777654
No 60
>PTZ00062 glutaredoxin; Provisional
Probab=99.73 E-value=3.7e-17 Score=128.57 Aligned_cols=89 Identities=16% Similarity=0.244 Sum_probs=76.2
Q ss_pred CChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEc
Q 029191 87 GSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWK 166 (197)
Q Consensus 87 ~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~ 166 (197)
.+.++|++.+. ...+.++++|||+||++|+.+.|.+.+|+++| +++.|++||++ |+|.++||++||+
T Consensus 4 ~~~ee~~~~i~---~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~-~~~~F~~V~~d---------~~V~~vPtfv~~~ 70 (204)
T PTZ00062 4 IKKEEKDKLIE---SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDF-PSLEFYVVNLA---------DANNEYGVFEFYQ 70 (204)
T ss_pred CCHHHHHHHHh---cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHC-CCcEEEEEccc---------cCcccceEEEEEE
Confidence 34788998883 33488999999999999999999999999999 89999999987 8999999999999
Q ss_pred CCeEEEEEeCCCChHHHHHHHHH
Q 029191 167 DGKKQAEVIGGHKSYLVINEVRE 189 (197)
Q Consensus 167 ~G~~v~~~~G~~~~~~l~~~i~~ 189 (197)
+|+.+.++.|.... ++...+++
T Consensus 71 ~g~~i~r~~G~~~~-~~~~~~~~ 92 (204)
T PTZ00062 71 NSQLINSLEGCNTS-TLVSFIRG 92 (204)
T ss_pred CCEEEeeeeCCCHH-HHHHHHHH
Confidence 99999999997643 44444443
No 61
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.73 E-value=1.2e-17 Score=120.91 Aligned_cols=100 Identities=16% Similarity=0.271 Sum_probs=74.3
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCC--CCEEEEEc-C
Q 029191 91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMK--MPTIQLWK-D 167 (197)
Q Consensus 91 ~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~--~Pt~~~~~-~ 167 (197)
+|++.+..|..++++|+|+|||+||++|+.+.|.+.+..........|+.||++.++......|++.+ +||++||. +
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~ 86 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPS 86 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCC
Confidence 46667666668899999999999999999999999997775534456667777766434567899987 99999995 9
Q ss_pred CeEEE---EEeCCCChHHHHHHHHHH
Q 029191 168 GKKQA---EVIGGHKSYLVINEVREM 190 (197)
Q Consensus 168 G~~v~---~~~G~~~~~~l~~~i~~~ 190 (197)
|+.+. ...|......+.+.|...
T Consensus 87 Gk~~~~~~~~~~~~~~~~f~~~~~~~ 112 (117)
T cd02959 87 GDVHPEIINKKGNPNYKYFYSSAAQV 112 (117)
T ss_pred CCCchhhccCCCCccccccCCCHHHH
Confidence 98865 455666554444444333
No 62
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.71 E-value=1.8e-17 Score=134.42 Aligned_cols=86 Identities=20% Similarity=0.453 Sum_probs=75.6
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHh---CCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEEEEEeCC
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADY---HPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGG 177 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~---~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~ 177 (197)
..+..++|+||||||+||+++.|+|.++.-++ +..+++.++|++..+ .++.+|+|+++||+.||++|..+ .|.|.
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~-aiAnefgiqGYPTIk~~kgd~a~-dYRG~ 118 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFP-AIANEFGIQGYPTIKFFKGDHAI-DYRGG 118 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccch-hhHhhhccCCCceEEEecCCeee-ecCCC
Confidence 46889999999999999999999999998776 345999999999999 79999999999999999998665 78999
Q ss_pred CChHHHHHHHH
Q 029191 178 HKSYLVINEVR 188 (197)
Q Consensus 178 ~~~~~l~~~i~ 188 (197)
+.++.++++-.
T Consensus 119 R~Kd~iieFAh 129 (468)
T KOG4277|consen 119 REKDAIIEFAH 129 (468)
T ss_pred ccHHHHHHHHH
Confidence 99976665543
No 63
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.70 E-value=2e-16 Score=106.58 Aligned_cols=80 Identities=20% Similarity=0.384 Sum_probs=69.0
Q ss_pred EEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEEEEEeCCCChHHHHH
Q 029191 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYLVIN 185 (197)
Q Consensus 106 vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~ 185 (197)
.+..||++||++|+.+.|.+++++++++..+.+++||+++++ +++++|++.++||+++ +|+ .++.|..+.+++.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~~ 76 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENP-QKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELVE 76 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCH-HHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHHH
Confidence 367899999999999999999999999767999999999988 7999999999999986 776 37789888866666
Q ss_pred HHHHH
Q 029191 186 EVREM 190 (197)
Q Consensus 186 ~i~~~ 190 (197)
.|.+.
T Consensus 77 ~l~~~ 81 (82)
T TIGR00411 77 AIKKR 81 (82)
T ss_pred HHHhh
Confidence 66554
No 64
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.70 E-value=2.1e-16 Score=141.90 Aligned_cols=109 Identities=21% Similarity=0.384 Sum_probs=91.4
Q ss_pred ccCeeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHH---HHHHHHhCCCeEEEEEECCCCh---HHHHHH
Q 029191 80 SIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVP---HKLVAR 153 (197)
Q Consensus 80 ~~~v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~---~~l~~~ 153 (197)
.....++.+.++|++.+.+++.++|+|+|+|||+||++|+.+++.. .++.+++ +++.++++|+++++ .++.++
T Consensus 451 ~~~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l-~~~~~v~vDvt~~~~~~~~l~~~ 529 (571)
T PRK00293 451 HLNFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQAL-ADTVLLQADVTANNAEDVALLKH 529 (571)
T ss_pred CCCceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHh-cCCEEEEEECCCCChhhHHHHHH
Confidence 3457888889999999987767789999999999999999999975 6788888 67999999998753 368899
Q ss_pred cCCCCCCEEEEEc-CCeE--EEEEeCCCChHHHHHHHHH
Q 029191 154 AGVMKMPTIQLWK-DGKK--QAEVIGGHKSYLVINEVRE 189 (197)
Q Consensus 154 ~~i~~~Pt~~~~~-~G~~--v~~~~G~~~~~~l~~~i~~ 189 (197)
|+|.++||+++|+ +|++ +.++.|..+.+++.+.+++
T Consensus 530 ~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~ 568 (571)
T PRK00293 530 YNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQ 568 (571)
T ss_pred cCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHH
Confidence 9999999999996 7887 4688899998665555554
No 65
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.70 E-value=2e-16 Score=138.06 Aligned_cols=129 Identities=19% Similarity=0.310 Sum_probs=94.0
Q ss_pred hhhHHHhhhhcCCcccccCCCCCCCCCCccCeeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHH
Q 029191 52 IDNVIRVTKHEGSIKELNEDDDDDHAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAAD 131 (197)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~ 131 (197)
+..+++.+..+...+.+.++..+... ...+..+. .++|++.+. +.+++++|.|||+||++|+.+.|.++++++.
T Consensus 319 i~~fi~~~~~g~~~~~~~se~~p~~~--~~~v~~l~-~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~ 392 (462)
T TIGR01130 319 LEAFVKDFLDGKLKPYLKSEPIPEDD--EGPVKVLV-GKNFDEIVL---DETKDVLVEFYAPWCGHCKNLAPIYEELAEK 392 (462)
T ss_pred HHHHHHHHhcCCCCeeeccCCCCccC--CCccEEee-CcCHHHHhc---cCCCeEEEEEECCCCHhHHHHHHHHHHHHHH
Confidence 34444444344444444444433321 22233333 689998876 6799999999999999999999999999999
Q ss_pred hCC---CeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEE--EEEeCCCChHHHHHHHHH
Q 029191 132 YHP---RLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQ--AEVIGGHKSYLVINEVRE 189 (197)
Q Consensus 132 ~~~---~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v--~~~~G~~~~~~l~~~i~~ 189 (197)
+.+ ++.|+++|++.+. +.. ++|.++||+++|++|... ..+.|..+.+.+.++|.+
T Consensus 393 ~~~~~~~i~~~~id~~~n~--~~~-~~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~ 452 (462)
T TIGR01130 393 YKDAESDVVIAKMDATAND--VPP-FEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAK 452 (462)
T ss_pred hhcCCCcEEEEEEECCCCc--cCC-CCccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHh
Confidence 965 7999999999885 444 999999999999988653 578898888544444443
No 66
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.69 E-value=1.9e-16 Score=111.21 Aligned_cols=88 Identities=15% Similarity=0.217 Sum_probs=74.0
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCC--CCCEEEEEcC--CeEEEEEeC
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM--KMPTIQLWKD--GKKQAEVIG 176 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~--~~Pt~~~~~~--G~~v~~~~G 176 (197)
..++++++.||++||++|+.+.|.++++++++.+++.|+.||+++++ .++..|+|. ++|+++++++ |++.....|
T Consensus 10 ~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~-~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~ 88 (103)
T cd02982 10 ESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFG-RHLEYFGLKEEDLPVIAIINLSDGKKYLMPEE 88 (103)
T ss_pred hcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhH-HHHHHcCCChhhCCEEEEEecccccccCCCcc
Confidence 34799999999999999999999999999999888999999999988 799999999 9999999987 666544445
Q ss_pred CCChHHHHHHHHH
Q 029191 177 GHKSYLVINEVRE 189 (197)
Q Consensus 177 ~~~~~~l~~~i~~ 189 (197)
..+.+.+.++|.+
T Consensus 89 ~~~~~~l~~fi~~ 101 (103)
T cd02982 89 ELTAESLEEFVED 101 (103)
T ss_pred ccCHHHHHHHHHh
Confidence 4466444444443
No 67
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.69 E-value=8.5e-17 Score=130.50 Aligned_cols=100 Identities=22% Similarity=0.463 Sum_probs=90.7
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHh-----CCCeEEEEEECCCChHHHHHHcCCCCCCEEE
Q 029191 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADY-----HPRLRFYNVDVNAVPHKLVARAGVMKMPTIQ 163 (197)
Q Consensus 89 ~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~-----~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~ 163 (197)
.++++.++ ++...|+|.|||+||+-++.++|++++.+..+ .+++.+++|||+.+. +++.+|.|..+||+.
T Consensus 3 ~~N~~~il----~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~-~ia~ky~I~KyPTlK 77 (375)
T KOG0912|consen 3 SENIDSIL----DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKED-DIADKYHINKYPTLK 77 (375)
T ss_pred cccHHHhh----ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhh-HHhhhhccccCceee
Confidence 46788888 78999999999999999999999999988776 367999999999998 899999999999999
Q ss_pred EEcCCeEEE-EEeCCCChHHHHHHHHHHhhc
Q 029191 164 LWKDGKKQA-EVIGGHKSYLVINEVREMIGN 193 (197)
Q Consensus 164 ~~~~G~~v~-~~~G~~~~~~l~~~i~~~l~~ 193 (197)
+|++|.... +|.|.++.+.|.+.|++.+..
T Consensus 78 vfrnG~~~~rEYRg~RsVeaL~efi~kq~s~ 108 (375)
T KOG0912|consen 78 VFRNGEMMKREYRGQRSVEALIEFIEKQLSD 108 (375)
T ss_pred eeeccchhhhhhccchhHHHHHHHHHHHhcc
Confidence 999999865 899999999999988887654
No 68
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.63 E-value=3.7e-15 Score=118.66 Aligned_cols=88 Identities=22% Similarity=0.394 Sum_probs=73.0
Q ss_pred CCeEEEEEec---CCCHhHHHhhHHHHHHHHHhCCCe--EEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEE-EEEeC
Q 029191 103 DESVIIVWMA---SWCRKCIYLKPKLEKLAADYHPRL--RFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQ-AEVIG 176 (197)
Q Consensus 103 ~~~vvV~F~a---~wC~~C~~~~p~l~~la~~~~~~v--~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v-~~~~G 176 (197)
+...++.|++ +||++|+.+.|.++++++++ +++ .++.+|.++++ +++++|+|.++||+++|++|+.+ .++.|
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~-~~~~i~~v~vd~~~~~-~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G 96 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVS-PKLKLEIYDFDTPEDK-EEAEKYGVERVPTTIILEEGKDGGIRYTG 96 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhC-CCceEEEEecCCcccH-HHHHHcCCCccCEEEEEeCCeeeEEEEee
Confidence 3444556777 99999999999999999999 554 46666666887 79999999999999999999987 48999
Q ss_pred CCChHHHHHHHHHHhh
Q 029191 177 GHKSYLVINEVREMIG 192 (197)
Q Consensus 177 ~~~~~~l~~~i~~~l~ 192 (197)
....+++.++|..+++
T Consensus 97 ~~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 97 IPAGYEFAALIEDIVR 112 (215)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9998887777777653
No 69
>PHA02125 thioredoxin-like protein
Probab=99.62 E-value=5.1e-15 Score=98.72 Aligned_cols=63 Identities=24% Similarity=0.529 Sum_probs=55.1
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEEEEEeCCCC
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHK 179 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~ 179 (197)
++.|||+||++|+.+.|.|+++. +.+++||++++. +++++|+|.++||++ +|+.+.++.|...
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~-~l~~~~~v~~~PT~~---~g~~~~~~~G~~~ 64 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGV-ELTAKHHIRSLPTLV---NTSTLDRFTGVPR 64 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCH-HHHHHcCCceeCeEE---CCEEEEEEeCCCC
Confidence 78999999999999999997652 468899999987 899999999999997 6888889999643
No 70
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.60 E-value=2.5e-15 Score=107.17 Aligned_cols=86 Identities=22% Similarity=0.348 Sum_probs=65.6
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHH---HHHhCCCeEEEEEECCCCh-------------------HHHHHHcCCCC
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKL---AADYHPRLRFYNVDVNAVP-------------------HKLVARAGVMK 158 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~l---a~~~~~~v~~~~vd~~~~~-------------------~~l~~~~~i~~ 158 (197)
.++++++|.||+|||++|+.+.+.+.+. ...++.++.++.++++... .++.+.|+|.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 6799999999999999999999999864 3444457888999987543 25889999999
Q ss_pred CCEEEEEc-CCeEEEEEeCCCChHHHHHH
Q 029191 159 MPTIQLWK-DGKKQAEVIGGHKSYLVINE 186 (197)
Q Consensus 159 ~Pt~~~~~-~G~~v~~~~G~~~~~~l~~~ 186 (197)
+||++++. +|+.+.++.|..+.+++.+.
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~ 111 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKM 111 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhh
Confidence 99999995 89999999999999655443
No 71
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.60 E-value=1.5e-14 Score=115.06 Aligned_cols=82 Identities=26% Similarity=0.375 Sum_probs=69.9
Q ss_pred CCCeE-EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEEEEEeCCCCh
Q 029191 102 LDESV-IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKS 180 (197)
Q Consensus 102 ~~~~v-vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~ 180 (197)
.++++ ++.||++||++|+.+.|.+++++.++ +++.+.++|.+.++ +++++|+|.++||++++++|+. +.|....
T Consensus 131 ~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~~i~~~~vD~~~~~-~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~ 205 (215)
T TIGR02187 131 LDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-DKILGEMIEANENP-DLAEKYGVMSVPKIVINKGVEE---FVGAYPE 205 (215)
T ss_pred cCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-CceEEEEEeCCCCH-HHHHHhCCccCCEEEEecCCEE---EECCCCH
Confidence 34554 44499999999999999999999986 88999999999998 8999999999999999988864 7898888
Q ss_pred HHHHHHHH
Q 029191 181 YLVINEVR 188 (197)
Q Consensus 181 ~~l~~~i~ 188 (197)
+++.++|.
T Consensus 206 ~~l~~~l~ 213 (215)
T TIGR02187 206 EQFLEYIL 213 (215)
T ss_pred HHHHHHHH
Confidence 66555554
No 72
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=5.2e-15 Score=127.23 Aligned_cols=100 Identities=21% Similarity=0.427 Sum_probs=86.6
Q ss_pred hHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCe
Q 029191 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGK 169 (197)
Q Consensus 90 ~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~ 169 (197)
.+|...+. ..+++++|+||+|||++|+.+.|.|.++++.+++.+.++.||++.+. ++|.+|+|+++||+.+|.+|.
T Consensus 37 ~~~~~~~~---~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~-~~~~~y~i~gfPtl~~f~~~~ 112 (383)
T KOG0191|consen 37 DSFFDFLL---KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHK-DLCEKYGIQGFPTLKVFRPGK 112 (383)
T ss_pred cccHHHhh---ccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhH-HHHHhcCCccCcEEEEEcCCC
Confidence 44444443 78999999999999999999999999999999778999999999998 799999999999999999996
Q ss_pred EEEEEeCCCChHHHHHHHHHHhhc
Q 029191 170 KQAEVIGGHKSYLVINEVREMIGN 193 (197)
Q Consensus 170 ~v~~~~G~~~~~~l~~~i~~~l~~ 193 (197)
....+.|..+.+.+.+.+...++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~ 136 (383)
T KOG0191|consen 113 KPIDYSGPRNAESLAEFLIKELEP 136 (383)
T ss_pred ceeeccCcccHHHHHHHHHHhhcc
Confidence 667888988887777777666554
No 73
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.59 E-value=3.5e-14 Score=103.56 Aligned_cols=83 Identities=18% Similarity=0.133 Sum_probs=65.8
Q ss_pred hHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHH---HHHHHHhCCCeEEEEEECCCChHHHHH--------HcCCCC
Q 029191 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVPHKLVA--------RAGVMK 158 (197)
Q Consensus 90 ~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~~~l~~--------~~~i~~ 158 (197)
+.++.+. +++|+|+|+|||+||++|+.+.+.. .++++.+..++.++++|+++.+ ++.+ .|++.+
T Consensus 6 eal~~Ak----~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~-~~~~~~~~~~~~~~~~~G 80 (124)
T cd02955 6 EAFEKAR----REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERP-DVDKIYMNAAQAMTGQGG 80 (124)
T ss_pred HHHHHHH----HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCc-HHHHHHHHHHHHhcCCCC
Confidence 4455555 8899999999999999999998743 4677766568999999999887 4544 358999
Q ss_pred CCEEEEE-cCCeEEEEEeCC
Q 029191 159 MPTIQLW-KDGKKQAEVIGG 177 (197)
Q Consensus 159 ~Pt~~~~-~~G~~v~~~~G~ 177 (197)
+||++|+ .+|+.+....+.
T Consensus 81 ~Pt~vfl~~~G~~~~~~~~~ 100 (124)
T cd02955 81 WPLNVFLTPDLKPFFGGTYF 100 (124)
T ss_pred CCEEEEECCCCCEEeeeeec
Confidence 9999999 578888665543
No 74
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.58 E-value=1.6e-14 Score=96.54 Aligned_cols=69 Identities=19% Similarity=0.316 Sum_probs=56.3
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEEEEEeCC-CChHHH
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGG-HKSYLV 183 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~-~~~~~l 183 (197)
.|.|||+||++|+.+.|.+++++++++.++.++++| + . +.+.+|++.++||+++ +|+.+ +.|. .+.+++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~-~-~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l 71 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT--D-M-NEILEAGVTATPGVAV--DGELV--IMGKIPSKEEI 71 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--C-H-HHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHH
Confidence 388999999999999999999999997778887777 2 3 3578899999999999 88877 6674 444333
No 75
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.56 E-value=1.2e-13 Score=99.25 Aligned_cols=104 Identities=13% Similarity=0.193 Sum_probs=87.6
Q ss_pred hHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHH-H--HHHHHHhCCCeEEEEEECCCCh-HHHHHHcCCCCCCEEEEE
Q 029191 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPK-L--EKLAADYHPRLRFYNVDVNAVP-HKLVARAGVMKMPTIQLW 165 (197)
Q Consensus 90 ~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~-l--~~la~~~~~~v~~~~vd~~~~~-~~l~~~~~i~~~Pt~~~~ 165 (197)
.+|++++..|+.++|+++|+|+++||++|+.+... | +++.+.+..+..++++|++..+ ..++..|++.++|+++++
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i 83 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAII 83 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEE
Confidence 46788888877899999999999999999999774 4 5566666567889999998643 368899999999999999
Q ss_pred c--CCeEEEEEeCCCChHHHHHHHHHHhhc
Q 029191 166 K--DGKKQAEVIGGHKSYLVINEVREMIGN 193 (197)
Q Consensus 166 ~--~G~~v~~~~G~~~~~~l~~~i~~~l~~ 193 (197)
. +|+.+.+..|..+++.+...|++.++.
T Consensus 84 ~~~~g~~l~~~~G~~~~~~f~~~L~~~~~~ 113 (114)
T cd02958 84 DPRTGEVLKVWSGNITPEDLLSQLIEFLEE 113 (114)
T ss_pred eCccCcEeEEEcCCCCHHHHHHHHHHHHhc
Confidence 5 689999999999999888888887764
No 76
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.56 E-value=6.6e-14 Score=108.96 Aligned_cols=91 Identities=19% Similarity=0.280 Sum_probs=74.9
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChH----------------------HHHHHcCCCC
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH----------------------KLVARAGVMK 158 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~----------------------~l~~~~~i~~ 158 (197)
..+++++|+|||+||++|++..|.+.++.++ ++.++.|+.++... .+...|+|.+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 142 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 142 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence 4689999999999999999999999988653 57778888754431 3556899999
Q ss_pred CCEEEEE-cCCeEEEEEeCCCChHHHHHHHHHHhhcc
Q 029191 159 MPTIQLW-KDGKKQAEVIGGHKSYLVINEVREMIGNE 194 (197)
Q Consensus 159 ~Pt~~~~-~~G~~v~~~~G~~~~~~l~~~i~~~l~~~ 194 (197)
+|+.+++ ++|+.+.++.|..+.+.+.+.|+.++++.
T Consensus 143 ~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~ 179 (185)
T PRK15412 143 APETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKY 179 (185)
T ss_pred CCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 9977777 59999999999999988888888888654
No 77
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.55 E-value=9.7e-14 Score=104.80 Aligned_cols=89 Identities=16% Similarity=0.325 Sum_probs=67.0
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh-----------HHHH-HHc---CCCCCCEEEEE
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP-----------HKLV-ARA---GVMKMPTIQLW 165 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-----------~~l~-~~~---~i~~~Pt~~~~ 165 (197)
..++..+|+|||+||++|++..|.+++++++|+ +.++.|+++... .+.. ..| ++.++||.+++
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI 125 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV 125 (153)
T ss_pred hcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence 446777999999999999999999999999984 555556665421 1233 345 88999999999
Q ss_pred c-CCeE-EEEEeCCCChHHHHHHHHHHh
Q 029191 166 K-DGKK-QAEVIGGHKSYLVINEVREMI 191 (197)
Q Consensus 166 ~-~G~~-v~~~~G~~~~~~l~~~i~~~l 191 (197)
+ +|+. .....|..+.+++.+.|.++|
T Consensus 126 D~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 126 NVNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred eCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 5 5665 557889999877777666553
No 78
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.54 E-value=1.9e-13 Score=112.38 Aligned_cols=90 Identities=14% Similarity=0.204 Sum_probs=73.1
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh----------HHHHHHcCCCCCCEEEEEcC-Ce
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP----------HKLVARAGVMKMPTIQLWKD-GK 169 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~----------~~l~~~~~i~~~Pt~~~~~~-G~ 169 (197)
-.++++||+|||+||++|+.+.|.+.+++++|+ +.++.|++|... ..++++|+|.++||++++++ |+
T Consensus 164 l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~ 241 (271)
T TIGR02740 164 LAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPN 241 (271)
T ss_pred hcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCC
Confidence 458999999999999999999999999999984 566666666521 25889999999999999975 55
Q ss_pred EEE-EEeCCCChHHHHHHHHHHhh
Q 029191 170 KQA-EVIGGHKSYLVINEVREMIG 192 (197)
Q Consensus 170 ~v~-~~~G~~~~~~l~~~i~~~l~ 192 (197)
.+. ...|..+.++|.+.|.....
T Consensus 242 ~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 242 QFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHhc
Confidence 544 45688999888888876654
No 79
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.52 E-value=1.4e-13 Score=121.45 Aligned_cols=87 Identities=24% Similarity=0.354 Sum_probs=72.2
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEEC----------------------------CCChHHHH
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDV----------------------------NAVPHKLV 151 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~----------------------------~~~~~~l~ 151 (197)
+++++|||+|||+||++|+...|.++++++++. +++.++.|.. |.+. .+.
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~-~la 132 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGG-TLA 132 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccH-HHH
Confidence 579999999999999999999999999999984 4566665532 3333 688
Q ss_pred HHcCCCCCCEEEEE-cCCeEEEEEeCCCChHHHHHHHH
Q 029191 152 ARAGVMKMPTIQLW-KDGKKQAEVIGGHKSYLVINEVR 188 (197)
Q Consensus 152 ~~~~i~~~Pt~~~~-~~G~~v~~~~G~~~~~~l~~~i~ 188 (197)
+.|+|.++||++++ ++|+.+.++.|..+.+++.+.|+
T Consensus 133 k~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 99999999999777 68999999999999976666665
No 80
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.52 E-value=1.2e-13 Score=103.42 Aligned_cols=73 Identities=22% Similarity=0.365 Sum_probs=60.3
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCC--------CeEEEEEECCCChH------------------------
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP--------RLRFYNVDVNAVPH------------------------ 148 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~--------~v~~~~vd~~~~~~------------------------ 148 (197)
-++++|+|+|||+||++|+++.|.+.++.+++.+ ++.++.|+.+...+
T Consensus 23 ~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~ 102 (146)
T cd03008 23 LENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRR 102 (146)
T ss_pred hCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHH
Confidence 4589999999999999999999999998876632 58888898875431
Q ss_pred HHHHHcCCCCCCEEEEEc-CCeEEEE
Q 029191 149 KLVARAGVMKMPTIQLWK-DGKKQAE 173 (197)
Q Consensus 149 ~l~~~~~i~~~Pt~~~~~-~G~~v~~ 173 (197)
.+++.|+|.++||++++. +|+.+.+
T Consensus 103 ~l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 103 ELEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHHcCCCCCCEEEEECCCCcEEee
Confidence 477889999999999995 7777643
No 81
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.52 E-value=2.5e-13 Score=104.54 Aligned_cols=89 Identities=25% Similarity=0.288 Sum_probs=71.7
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh----------------------HHHHHHcCCCC
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP----------------------HKLVARAGVMK 158 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~----------------------~~l~~~~~i~~ 158 (197)
..+++++|+||++||++|+.+.|.++++.+. ++.++.|+.++.. ..+.+.|++.+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence 4689999999999999999999999988764 3666666653221 14678899999
Q ss_pred CCEEEEE-cCCeEEEEEeCCCChHHHHHHHHHHhh
Q 029191 159 MPTIQLW-KDGKKQAEVIGGHKSYLVINEVREMIG 192 (197)
Q Consensus 159 ~Pt~~~~-~~G~~v~~~~G~~~~~~l~~~i~~~l~ 192 (197)
+|+.+++ ++|+.+.++.|..+.+++.+.|.+.+.
T Consensus 138 ~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 138 APETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred CCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 9977776 689999999999999888888888774
No 82
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.51 E-value=4.2e-13 Score=98.27 Aligned_cols=100 Identities=14% Similarity=0.203 Sum_probs=88.2
Q ss_pred hHHHHHHHHHhcCCCeEEEEEecC--CCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCChHHHHHHcCCCCCCEEEEEc
Q 029191 90 SQFDRVIAEAQQLDESVIIVWMAS--WCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWK 166 (197)
Q Consensus 90 ~~f~~~~~~a~~~~~~vvV~F~a~--wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~ 166 (197)
.++++.+ ...+..+|.|-.. -++.+-...-+|++++++|. .++.+++||+|+++ +++.+|||.++||+++|+
T Consensus 25 ~~~~~~~----~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~-~LA~~fgV~siPTLl~Fk 99 (132)
T PRK11509 25 SRLDDWL----TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSE-AIGDRFGVFRFPATLVFT 99 (132)
T ss_pred ccHHHHH----hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCH-HHHHHcCCccCCEEEEEE
Confidence 6788888 5566667776643 58899999999999999995 35999999999998 899999999999999999
Q ss_pred CCeEEEEEeCCCChHHHHHHHHHHhhcc
Q 029191 167 DGKKQAEVIGGHKSYLVINEVREMIGNE 194 (197)
Q Consensus 167 ~G~~v~~~~G~~~~~~l~~~i~~~l~~~ 194 (197)
+|+.+.+..|..+++.+.++|.+++++-
T Consensus 100 dGk~v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 100 GGNYRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred CCEEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence 9999999999999999999999988764
No 83
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.49 E-value=1.9e-13 Score=88.83 Aligned_cols=60 Identities=28% Similarity=0.470 Sum_probs=54.4
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeE
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKK 170 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~ 170 (197)
++.||++||++|+.+.+.++++++.+ +++.+..+|+++++ +++++|++.++||+++ +|+.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~-~l~~~~~i~~vPti~i--~~~~ 62 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFP-DLADEYGVMSVPAIVI--NGKV 62 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCH-hHHHHcCCcccCEEEE--CCEE
Confidence 67899999999999999999998876 78999999999998 7999999999999877 6654
No 84
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.49 E-value=3.5e-13 Score=93.25 Aligned_cols=67 Identities=31% Similarity=0.625 Sum_probs=56.8
Q ss_pred CCeEEEEEecCCCHhHHHhhHHHHHHHHHhC--CCeEEEEEECCCChH------------------------HHHHHcCC
Q 029191 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYH--PRLRFYNVDVNAVPH------------------------KLVARAGV 156 (197)
Q Consensus 103 ~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~~~~~~------------------------~l~~~~~i 156 (197)
+|+++|+|||+||++|+...|.+.++.++|+ +++.++.|..|+... .+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 6899999999999999999999999999996 689999999986531 58899999
Q ss_pred CCCCEEEEEc-CCe
Q 029191 157 MKMPTIQLWK-DGK 169 (197)
Q Consensus 157 ~~~Pt~~~~~-~G~ 169 (197)
.++|+++++. +|+
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 9999999995 564
No 85
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.49 E-value=3.1e-13 Score=118.88 Aligned_cols=111 Identities=19% Similarity=0.335 Sum_probs=89.8
Q ss_pred CCCccCe-eecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHH---HHHHHhCCCeEEEEEECCCChH---H
Q 029191 77 APVSIPL-TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLE---KLAADYHPRLRFYNVDVNAVPH---K 149 (197)
Q Consensus 77 ~~~~~~v-~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~---~la~~~~~~v~~~~vd~~~~~~---~ 149 (197)
+...... ..+++.+++++.+.+ ..+|||+|+|||+||-.||.+++..- +.+.+. .++...++|++++++ +
T Consensus 449 ~~~~~~~~q~~s~~~~L~~~la~--~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~-~~~vlLqaDvT~~~p~~~~ 525 (569)
T COG4232 449 SVSHGEFWQPISPLAELDQALAE--AKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL-QDVVLLQADVTANDPAITA 525 (569)
T ss_pred CCccchhhhccCCHHHHHHHHHh--CCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc-CCeEEEEeeecCCCHHHHH
Confidence 3344444 677777788888865 34579999999999999999999773 444444 889999999999874 6
Q ss_pred HHHHcCCCCCCEEEEEc-CCeEEEEEeCCCChHHHHHHHHHH
Q 029191 150 LVARAGVMKMPTIQLWK-DGKKQAEVIGGHKSYLVINEVREM 190 (197)
Q Consensus 150 l~~~~~i~~~Pt~~~~~-~G~~v~~~~G~~~~~~l~~~i~~~ 190 (197)
+.++|++-++|++++|. +|++.....|..+.+.+.+.++++
T Consensus 526 lLk~~~~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 526 LLKRLGVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred HHHHcCCCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 78999999999999997 777766689999998888888765
No 86
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.48 E-value=3.4e-13 Score=98.26 Aligned_cols=78 Identities=23% Similarity=0.349 Sum_probs=64.2
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEEC-----------------------CCChHHHHHHcCCC
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV-----------------------NAVPHKLVARAGVM 157 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~-----------------------~~~~~~l~~~~~i~ 157 (197)
..+++++|+|||+||++|+...|.++++.+++ ++.++.|+. |... .+++.|++.
T Consensus 23 ~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~v~ 99 (127)
T cd03010 23 LKGKPYLLNVWASWCAPCREEHPVLMALARQG--RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDG-RVGIDLGVY 99 (127)
T ss_pred cCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc--CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcc-hHHHhcCCC
Confidence 45899999999999999999999999999886 366666664 3333 678889999
Q ss_pred CCCEEEEE-cCCeEEEEEeCCCChH
Q 029191 158 KMPTIQLW-KDGKKQAEVIGGHKSY 181 (197)
Q Consensus 158 ~~Pt~~~~-~~G~~v~~~~G~~~~~ 181 (197)
++|+.+++ ++|+.+.++.|..+.+
T Consensus 100 ~~P~~~~ld~~G~v~~~~~G~~~~~ 124 (127)
T cd03010 100 GVPETFLIDGDGIIRYKHVGPLTPE 124 (127)
T ss_pred CCCeEEEECCCceEEEEEeccCChH
Confidence 99966666 6999899999988764
No 87
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.46 E-value=5.1e-13 Score=98.27 Aligned_cols=71 Identities=24% Similarity=0.378 Sum_probs=58.7
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCC---CeEEEEEECCCCh------------------------HHHHHH
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP---RLRFYNVDVNAVP------------------------HKLVAR 153 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~~~~~------------------------~~l~~~ 153 (197)
-.+++++|+|||+||++|+...|.+.++++++++ ++.++.|+++... +.+.+.
T Consensus 15 ~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 94 (132)
T cd02964 15 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQ 94 (132)
T ss_pred hCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHH
Confidence 4589999999999999999999999999998843 5778888776542 145677
Q ss_pred cCCCCCCEEEEEc-CCeEE
Q 029191 154 AGVMKMPTIQLWK-DGKKQ 171 (197)
Q Consensus 154 ~~i~~~Pt~~~~~-~G~~v 171 (197)
|+|.++||++++. +|+.+
T Consensus 95 ~~v~~iPt~~lid~~G~iv 113 (132)
T cd02964 95 FKVEGIPTLVVLKPDGDVV 113 (132)
T ss_pred cCCCCCCEEEEECCCCCEE
Confidence 9999999999996 67665
No 88
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.46 E-value=1.7e-12 Score=99.29 Aligned_cols=89 Identities=20% Similarity=0.397 Sum_probs=73.3
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCC-CeEEEEEECCCCh---------------------HHHHHHcCCCC
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVP---------------------HKLVARAGVMK 158 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~---------------------~~l~~~~~i~~ 158 (197)
-.+++++|.||++||++|+...+.+.++++++.+ ++.++.|+++... .++.+.|+|.+
T Consensus 59 ~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 138 (173)
T PRK03147 59 LKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGP 138 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCC
Confidence 3579999999999999999999999999999943 4888888876432 26789999999
Q ss_pred CCEEEEEc-CCeEEEEEeCCCChHHHHHHHHH
Q 029191 159 MPTIQLWK-DGKKQAEVIGGHKSYLVINEVRE 189 (197)
Q Consensus 159 ~Pt~~~~~-~G~~v~~~~G~~~~~~l~~~i~~ 189 (197)
+|+++++. +|+.+..+.|..+.+++.+.+.+
T Consensus 139 ~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 139 LPTTFLIDKDGKVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred cCeEEEECCCCcEEEEEeCCCCHHHHHHHHHH
Confidence 99999985 88888888999988665555543
No 89
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.45 E-value=6e-13 Score=97.56 Aligned_cols=72 Identities=19% Similarity=0.363 Sum_probs=59.5
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhC---CCeEEEEEECCCCh-----------------------HHHHHHc
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNAVP-----------------------HKLVARA 154 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~---~~v~~~~vd~~~~~-----------------------~~l~~~~ 154 (197)
-.+++++|+||++||++|+.+.|.+.++.+++. +++.++.|++|... ..+++.|
T Consensus 16 ~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (131)
T cd03009 16 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTF 95 (131)
T ss_pred hCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHc
Confidence 358899999999999999999999999988883 35777777776542 2577899
Q ss_pred CCCCCCEEEEEc-CCeEEE
Q 029191 155 GVMKMPTIQLWK-DGKKQA 172 (197)
Q Consensus 155 ~i~~~Pt~~~~~-~G~~v~ 172 (197)
+|.++|+++++. +|+.+.
T Consensus 96 ~v~~~P~~~lid~~G~i~~ 114 (131)
T cd03009 96 KIEGIPTLIILDADGEVVT 114 (131)
T ss_pred CCCCCCEEEEECCCCCEEc
Confidence 999999999996 787653
No 90
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=5.2e-14 Score=122.71 Aligned_cols=107 Identities=19% Similarity=0.388 Sum_probs=83.0
Q ss_pred eeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHh---CCCeEEEEEECCCCh-HHHHHHcCCCC
Q 029191 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADY---HPRLRFYNVDVNAVP-HKLVARAGVMK 158 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~---~~~v~~~~vd~~~~~-~~l~~~~~i~~ 158 (197)
+..+. .++|+..+. .+.+-.+|+||++|||+|++++|.|+++++.. .+-+.++.|||.+.. ..+|++|+|.+
T Consensus 41 ii~Ld-~~tf~~~v~---~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~ 116 (606)
T KOG1731|consen 41 IIELD-VDTFNAAVF---GSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG 116 (606)
T ss_pred eEEee-hhhhHHHhc---ccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC
Confidence 43333 689999996 55578999999999999999999999999987 355899999996543 27999999999
Q ss_pred CCEEEEEcCCeEE----EEEeCCCChHHHHHHHHHHhhc
Q 029191 159 MPTIQLWKDGKKQ----AEVIGGHKSYLVINEVREMIGN 193 (197)
Q Consensus 159 ~Pt~~~~~~G~~v----~~~~G~~~~~~l~~~i~~~l~~ 193 (197)
+||+.+|+.+..- ..+.|.....++.+.+.+.+.+
T Consensus 117 ~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~ 155 (606)
T KOG1731|consen 117 YPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAE 155 (606)
T ss_pred CceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHH
Confidence 9999999644221 2345666676777777766654
No 91
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=4.6e-13 Score=115.20 Aligned_cols=106 Identities=23% Similarity=0.386 Sum_probs=90.5
Q ss_pred eeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhC--CCeEEEEEECCCChHHHHHHcCCCCCC
Q 029191 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH--PRLRFYNVDVNAVPHKLVARAGVMKMP 160 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~~~~~~~l~~~~~i~~~P 160 (197)
+..+. ..+|...+. ..+..++|.||+|||++|+.+.|.|++++..+. ..+.++.+|++... .++.+++|.++|
T Consensus 146 v~~l~-~~~~~~~~~---~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~-~~~~~~~v~~~P 220 (383)
T KOG0191|consen 146 VFELT-KDNFDETVK---DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHK-SLASRLEVRGYP 220 (383)
T ss_pred eEEcc-ccchhhhhh---ccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHH-HHhhhhcccCCc
Confidence 44444 477887776 789999999999999999999999999999883 67999999999776 799999999999
Q ss_pred EEEEEcCCeE-EEEEeCCCChHHHHHHHHHHhhc
Q 029191 161 TIQLWKDGKK-QAEVIGGHKSYLVINEVREMIGN 193 (197)
Q Consensus 161 t~~~~~~G~~-v~~~~G~~~~~~l~~~i~~~l~~ 193 (197)
|+++|++|.. ...+.|.++.+.+..++.+....
T Consensus 221 t~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 221 TLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred eEEEecCCCcccccccccccHHHHHHHHHhhcCC
Confidence 9999998888 77888999997777777766554
No 92
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.44 E-value=1.3e-12 Score=90.00 Aligned_cols=75 Identities=19% Similarity=0.252 Sum_probs=64.3
Q ss_pred CCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEEEEEeCCCChH
Q 029191 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSY 181 (197)
Q Consensus 102 ~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~~ 181 (197)
.+..-+..|+++||++|....+.++++++.+ +++.+..+|+++.+ +++.+|+|.++||+++ +|+.+. .|..+.+
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-~~i~~~~vd~~~~~-e~a~~~~V~~vPt~vi--dG~~~~--~G~~~~~ 84 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLN-PNIEHEMIDGALFQ-DEVEERGIMSVPAIFL--NGELFG--FGRMTLE 84 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHC-CCceEEEEEhHhCH-HHHHHcCCccCCEEEE--CCEEEE--eCCCCHH
Confidence 3555688899999999999999999999988 88999999999998 7999999999999975 887764 4766554
Q ss_pred H
Q 029191 182 L 182 (197)
Q Consensus 182 ~ 182 (197)
+
T Consensus 85 e 85 (89)
T cd03026 85 E 85 (89)
T ss_pred H
Confidence 3
No 93
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.43 E-value=1.4e-12 Score=124.37 Aligned_cols=93 Identities=22% Similarity=0.273 Sum_probs=77.6
Q ss_pred CCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCC-CeEEEEEEC---CC--C---------------------hHHHHHHc
Q 029191 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDV---NA--V---------------------PHKLVARA 154 (197)
Q Consensus 102 ~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~---~~--~---------------------~~~l~~~~ 154 (197)
.+++|||+|||+||++|+...|.|+++.++|++ ++.++.|.. |. . ...+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 589999999999999999999999999999954 377777642 11 0 11577899
Q ss_pred CCCCCCEEEEE-cCCeEEEEEeCCCChHHHHHHHHHHhhcc
Q 029191 155 GVMKMPTIQLW-KDGKKQAEVIGGHKSYLVINEVREMIGNE 194 (197)
Q Consensus 155 ~i~~~Pt~~~~-~~G~~v~~~~G~~~~~~l~~~i~~~l~~~ 194 (197)
+|.++||++++ ++|+.+.++.|....+.+.+.|.+.+.-+
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~~~ 539 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQYY 539 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHHhh
Confidence 99999999999 69999999999999988888888887644
No 94
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.40 E-value=1.2e-12 Score=95.86 Aligned_cols=87 Identities=13% Similarity=0.222 Sum_probs=63.8
Q ss_pred hHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHH---HHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEE-
Q 029191 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLW- 165 (197)
Q Consensus 90 ~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~- 165 (197)
.+|++.+..|++++|+|+|+||++||++|+.+...+ .++.+....++..+.++.+..+.... ..+ .++||++|+
T Consensus 10 ~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld 87 (130)
T cd02960 10 QTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-QYVPRIMFVD 87 (130)
T ss_pred hhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-cccCeEEEEC
Confidence 468888888879999999999999999999999976 34555554456666777653321111 233 789999999
Q ss_pred cCCeEEEEEeCCC
Q 029191 166 KDGKKQAEVIGGH 178 (197)
Q Consensus 166 ~~G~~v~~~~G~~ 178 (197)
.+|+++.++.|..
T Consensus 88 ~~g~vi~~i~Gy~ 100 (130)
T cd02960 88 PSLTVRADITGRY 100 (130)
T ss_pred CCCCCcccccccc
Confidence 5888877777743
No 95
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.40 E-value=2.2e-12 Score=93.27 Aligned_cols=82 Identities=24% Similarity=0.411 Sum_probs=63.0
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEEC---------------------CCChHHHHHHcCCCCC
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV---------------------NAVPHKLVARAGVMKM 159 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~---------------------~~~~~~l~~~~~i~~~ 159 (197)
..+++++|.||++||++|+.+.|.+.++++++ . +..+.+|- +.+. ++++.|+|.++
T Consensus 18 ~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~-~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~i~~~ 94 (123)
T cd03011 18 LSGKPVLVYFWATWCPVCRFTSPTVNQLAADY-P-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDG-VISARWGVSVT 94 (123)
T ss_pred hCCCEEEEEEECCcChhhhhhChHHHHHHhhC-C-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCc-HHHHhCCCCcc
Confidence 45799999999999999999999999998874 2 22222221 2333 69999999999
Q ss_pred CEEEEEcCCeEEEEEeCCCChHHHHH
Q 029191 160 PTIQLWKDGKKQAEVIGGHKSYLVIN 185 (197)
Q Consensus 160 Pt~~~~~~G~~v~~~~G~~~~~~l~~ 185 (197)
|+++++.+|+...++.|..+.+.+.+
T Consensus 95 P~~~vid~~gi~~~~~g~~~~~~~~~ 120 (123)
T cd03011 95 PAIVIVDPGGIVFVTTGVTSEWGLRL 120 (123)
T ss_pred cEEEEEcCCCeEEEEeccCCHHHHHh
Confidence 99999976557778899888855443
No 96
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.39 E-value=5.8e-12 Score=97.15 Aligned_cols=85 Identities=15% Similarity=0.309 Sum_probs=69.1
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCC------------hHHHHHHcCC--CCCCEEEEE-cCCeEE
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV------------PHKLVARAGV--MKMPTIQLW-KDGKKQ 171 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~------------~~~l~~~~~i--~~~Pt~~~~-~~G~~v 171 (197)
+|.||++||++|++..|.+.+++++|+ +.++-|++|.. +..+...|++ .++||.+++ ++|+.+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 777999999999999999999999983 66666666533 1236678885 699999999 588775
Q ss_pred -EEEeCCCChHHHHHHHHHHhhc
Q 029191 172 -AEVIGGHKSYLVINEVREMIGN 193 (197)
Q Consensus 172 -~~~~G~~~~~~l~~~i~~~l~~ 193 (197)
..+.|..+.+++.+.|..+++.
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHHhh
Confidence 4799999998888888888765
No 97
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.39 E-value=4.8e-12 Score=88.94 Aligned_cols=75 Identities=32% Similarity=0.546 Sum_probs=66.2
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCC-----------------------hHHHHHHcCC
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV-----------------------PHKLVARAGV 156 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~-----------------------~~~l~~~~~i 156 (197)
..+++++|.||++||++|+...+.+.++.++++ +++.++.|+++.. . .+.+.|++
T Consensus 17 ~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 95 (116)
T cd02966 17 LKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDG-ELAKAYGV 95 (116)
T ss_pred cCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcc-hHHHhcCc
Confidence 348999999999999999999999999999985 6799999999985 3 68999999
Q ss_pred CCCCEEEEEc-CCeEEEEEeC
Q 029191 157 MKMPTIQLWK-DGKKQAEVIG 176 (197)
Q Consensus 157 ~~~Pt~~~~~-~G~~v~~~~G 176 (197)
.++|+++++. +|+.+.++.|
T Consensus 96 ~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 96 RGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred CccceEEEECCCCcEEEEecC
Confidence 9999999995 7888877765
No 98
>smart00594 UAS UAS domain.
Probab=99.38 E-value=9e-12 Score=90.66 Aligned_cols=99 Identities=10% Similarity=0.108 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHH---HHHHHHhCCCeEEEEEECCCChH-HHHHHcCCCCCCEEEE
Q 029191 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVPH-KLVARAGVMKMPTIQL 164 (197)
Q Consensus 89 ~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~~-~l~~~~~i~~~Pt~~~ 164 (197)
..+|++++..|...+|+++|+|+++||+.|+.+.... .++.+.+..++.+..+|++..++ .++..|++.++|++++
T Consensus 13 ~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~ 92 (122)
T smart00594 13 QGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAI 92 (122)
T ss_pred eCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEE
Confidence 4678888888778899999999999999999988754 45666665678888999886653 6889999999999999
Q ss_pred Ec-CC-----eEEEEEeCCCChHHHHHHH
Q 029191 165 WK-DG-----KKQAEVIGGHKSYLVINEV 187 (197)
Q Consensus 165 ~~-~G-----~~v~~~~G~~~~~~l~~~i 187 (197)
+. +| ..+.+..|..+.++++..+
T Consensus 93 l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 93 VDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 94 54 2466888999986555443
No 99
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.38 E-value=1.3e-12 Score=88.46 Aligned_cols=75 Identities=20% Similarity=0.410 Sum_probs=59.8
Q ss_pred hHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHH---HHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEc
Q 029191 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWK 166 (197)
Q Consensus 90 ~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~ 166 (197)
.+|++.+..|.+++++++|+|+|+||++|+.+...+ .++.+.+..++.++++|.+...... .+...++|+++|+.
T Consensus 4 ~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~--~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 4 SDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA--QFDRQGYPTFFFLD 81 (82)
T ss_dssp SSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH--HHHHCSSSEEEEEE
T ss_pred hhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH--HhCCccCCEEEEeC
Confidence 357777777778999999999999999999999988 5566645578999999998776322 22237799999985
No 100
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.37 E-value=4.1e-12 Score=90.63 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=53.2
Q ss_pred CCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh--------------------HHHHHHcCCCCCCEE
Q 029191 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP--------------------HKLVARAGVMKMPTI 162 (197)
Q Consensus 103 ~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~--------------------~~l~~~~~i~~~Pt~ 162 (197)
+++++|.||++||++|+...|.++++++++.+++.++.+. +... +++.+.|++.++|+.
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 8999999999999999999999999998886667666552 2111 156778888888988
Q ss_pred EEEc-CCeEE
Q 029191 163 QLWK-DGKKQ 171 (197)
Q Consensus 163 ~~~~-~G~~v 171 (197)
++++ +|+.+
T Consensus 100 ~vid~~G~v~ 109 (114)
T cd02967 100 VLLDEAGVIA 109 (114)
T ss_pred EEECCCCeEE
Confidence 8885 66554
No 101
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.33 E-value=2.6e-11 Score=90.30 Aligned_cols=79 Identities=29% Similarity=0.465 Sum_probs=67.5
Q ss_pred cCCCeEEEEEecC-CCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCChH--------------------HHHHHcCCC-
Q 029191 101 QLDESVIIVWMAS-WCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVPH--------------------KLVARAGVM- 157 (197)
Q Consensus 101 ~~~~~vvV~F~a~-wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~~--------------------~l~~~~~i~- 157 (197)
-.+++++|.||++ ||++|+...|.+.++.+.|+ .++.++.|..+.++. .+.+.|++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 3599999999999 99999999999999999874 558888888765531 689999998
Q ss_pred --------CCCEEEEE-cCCeEEEEEeCCCC
Q 029191 158 --------KMPTIQLW-KDGKKQAEVIGGHK 179 (197)
Q Consensus 158 --------~~Pt~~~~-~~G~~v~~~~G~~~ 179 (197)
++|+++++ ++|+.+....|...
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 99998888 68999888888777
No 102
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.29 E-value=3.1e-11 Score=88.01 Aligned_cols=76 Identities=18% Similarity=0.235 Sum_probs=62.9
Q ss_pred CCCeEEEEEecCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCC-----Ch---------------------HHHHHHc
Q 029191 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNA-----VP---------------------HKLVARA 154 (197)
Q Consensus 102 ~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~-----~~---------------------~~l~~~~ 154 (197)
.+++++|+||++||++|+...|.+.++.++|+ .++.++.|+.+. .. ..+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 47999999999999999999999999999995 458888776521 11 1577889
Q ss_pred CCCCCCEEEEE-cCCeEEEEEeCC
Q 029191 155 GVMKMPTIQLW-KDGKKQAEVIGG 177 (197)
Q Consensus 155 ~i~~~Pt~~~~-~~G~~v~~~~G~ 177 (197)
++.++|+.+++ ++|+.+..+.|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 99999999999 589888888774
No 103
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.23 E-value=1.2e-10 Score=90.30 Aligned_cols=88 Identities=8% Similarity=0.017 Sum_probs=66.7
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEE------EEEECCCCh---------------------------
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRF------YNVDVNAVP--------------------------- 147 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~------~~vd~~~~~--------------------------- 147 (197)
-.+|.++|+|||.||++|+..+|.+++++++ ++.+ .-||.++..
T Consensus 57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~ 133 (184)
T TIGR01626 57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD 133 (184)
T ss_pred cCCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence 5699999999999999999999999999764 2333 445555321
Q ss_pred -HHHHHHcCCCCCCEE-EEE-cCCeEEEEEeCCCChHHHHHHHHHHhh
Q 029191 148 -HKLVARAGVMKMPTI-QLW-KDGKKQAEVIGGHKSYLVINEVREMIG 192 (197)
Q Consensus 148 -~~l~~~~~i~~~Pt~-~~~-~~G~~v~~~~G~~~~~~l~~~i~~~l~ 192 (197)
+.+...|++.++|+. +++ ++|+.+.++.|..+.+++.+ +..+|+
T Consensus 134 ~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~-~~~li~ 180 (184)
T TIGR01626 134 KGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT-VISLVN 180 (184)
T ss_pred cchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH-HHHHHH
Confidence 146779999999866 566 68999999999988866655 444443
No 104
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.23 E-value=1.7e-10 Score=90.87 Aligned_cols=93 Identities=14% Similarity=0.153 Sum_probs=70.5
Q ss_pred CCCeEEEEEecCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCC-------ChH---HHHHHcCC--------------
Q 029191 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNA-------VPH---KLVARAGV-------------- 156 (197)
Q Consensus 102 ~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~-------~~~---~l~~~~~i-------------- 156 (197)
.+++|||.|||+||++|+...|.+.++.++|+ .++.++.|+++. ... ..++++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~ 117 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN 117 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence 48999999999999999999999999999995 458889998742 111 23344332
Q ss_pred ----------------------CCCC---EEEEE-cCCeEEEEEeCCCChHHHHHHHHHHhhcc
Q 029191 157 ----------------------MKMP---TIQLW-KDGKKQAEVIGGHKSYLVINEVREMIGNE 194 (197)
Q Consensus 157 ----------------------~~~P---t~~~~-~~G~~v~~~~G~~~~~~l~~~i~~~l~~~ 194 (197)
.++| +.+++ ++|+.+.++.|..+.+.+.+.|++++++.
T Consensus 118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~~ 181 (199)
T PTZ00056 118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGVK 181 (199)
T ss_pred cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 1223 45555 79999999999888888888888887653
No 105
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.23 E-value=7.3e-11 Score=82.30 Aligned_cols=86 Identities=33% Similarity=0.595 Sum_probs=70.6
Q ss_pred CCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECC-CChHHHHHHcC--CCCCCEEEEEcCCeEEEEEeC--C
Q 029191 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN-AVPHKLVARAG--VMKMPTIQLWKDGKKQAEVIG--G 177 (197)
Q Consensus 103 ~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~-~~~~~l~~~~~--i~~~Pt~~~~~~G~~v~~~~G--~ 177 (197)
++++++.||++||++|+.+.|.+.++++++...+.+..+|+. ... ++...|+ +..+|+++++.+|..+....| .
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 110 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENP-DLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKV 110 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCCh-HHHHHHhhhhccCCeEEEEeCcchhhhhhhccc
Confidence 889999999999999999999999999999557999999997 666 6899999 999999999988877655555 4
Q ss_pred CChHHHHHHHHH
Q 029191 178 HKSYLVINEVRE 189 (197)
Q Consensus 178 ~~~~~l~~~i~~ 189 (197)
.....+++....
T Consensus 111 ~~~~~~~~~~~~ 122 (127)
T COG0526 111 LPKEALIDALGE 122 (127)
T ss_pred CCHHHHHHHhcc
Confidence 555444444433
No 106
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.20 E-value=3.5e-10 Score=91.08 Aligned_cols=91 Identities=15% Similarity=0.175 Sum_probs=70.5
Q ss_pred CCCeEEEEEecCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCC-------ChH---HHH-HHcC--------------
Q 029191 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNA-------VPH---KLV-ARAG-------------- 155 (197)
Q Consensus 102 ~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~-------~~~---~l~-~~~~-------------- 155 (197)
.++++||.|||+||++|+...|.+.++.++|+ .++.++.|+++. ... ..+ ++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 47999999999999999999999999999995 458888888742 111 121 2211
Q ss_pred --------------------CCCCCEEEEE-cCCeEEEEEeCCCChHHHHHHHHHHhh
Q 029191 156 --------------------VMKMPTIQLW-KDGKKQAEVIGGHKSYLVINEVREMIG 192 (197)
Q Consensus 156 --------------------i~~~Pt~~~~-~~G~~v~~~~G~~~~~~l~~~i~~~l~ 192 (197)
|...|+.+++ ++|+.+.++.|..+.+++.+.|+++|+
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 2235888888 699999999999999888888888774
No 107
>PLN02412 probable glutathione peroxidase
Probab=99.19 E-value=1.9e-10 Score=88.10 Aligned_cols=92 Identities=17% Similarity=0.184 Sum_probs=71.9
Q ss_pred CCCeEEEEEecCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCC-------ChHHH----HHH----------------
Q 029191 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNA-------VPHKL----VAR---------------- 153 (197)
Q Consensus 102 ~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~-------~~~~l----~~~---------------- 153 (197)
.++++||.|||+||++|+...|.+.++.++|+ .++.++-|+++. ...++ +++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 47999999999999999999999999999995 458888888742 11111 111
Q ss_pred -----cC-------------CCCCCEEEEE-cCCeEEEEEeCCCChHHHHHHHHHHhhc
Q 029191 154 -----AG-------------VMKMPTIQLW-KDGKKQAEVIGGHKSYLVINEVREMIGN 193 (197)
Q Consensus 154 -----~~-------------i~~~Pt~~~~-~~G~~v~~~~G~~~~~~l~~~i~~~l~~ 193 (197)
|+ |...|+.+++ ++|+.+.++.|..+.+.+...|+++|++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 11 4446888888 6899999999999998888888888865
No 108
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.17 E-value=1.5e-10 Score=94.63 Aligned_cols=113 Identities=17% Similarity=0.271 Sum_probs=85.3
Q ss_pred CccCeeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCC
Q 029191 79 VSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMK 158 (197)
Q Consensus 79 ~~~~v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~ 158 (197)
.-..|.+|.+.+.|-+++..+ ..+..|||.||-+.++.|..+...|..||.+| +.++|++|.++..+ +...|.+..
T Consensus 123 ~fG~v~ei~~~e~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~ky-p~vKFvkI~a~~~~--~~~~f~~~~ 198 (265)
T PF02114_consen 123 RFGEVYEIDSGEEFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCLECLARKY-PEVKFVKIRASKCP--ASENFPDKN 198 (265)
T ss_dssp ---SEEE--SHHHHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH--TTSEEEEEEECGCC--TTTTS-TTC
T ss_pred cCceEEEccChhhHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEEehhccC--cccCCcccC
Confidence 445688898888999888532 34668999999999999999999999999999 99999999998764 567899999
Q ss_pred CCEEEEEcCCeEEEEEeCCCC---hHHHHHHHHHHhhccC
Q 029191 159 MPTIQLWKDGKKQAEVIGGHK---SYLVINEVREMIGNEN 195 (197)
Q Consensus 159 ~Pt~~~~~~G~~v~~~~G~~~---~~~l~~~i~~~l~~~~ 195 (197)
+||+++|++|..+..++|... .+.....|+.+|.++.
T Consensus 199 LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G 238 (265)
T PF02114_consen 199 LPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYG 238 (265)
T ss_dssp -SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred CCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence 999999999999999887432 3455677888887763
No 109
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.15 E-value=5.5e-10 Score=87.20 Aligned_cols=73 Identities=21% Similarity=0.284 Sum_probs=53.7
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEE-------------CCC----ChHHHHHHcCCCCCCEEE
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD-------------VNA----VPHKLVARAGVMKMPTIQ 163 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd-------------~~~----~~~~l~~~~~i~~~Pt~~ 163 (197)
..+++++|+|||+||++|+...|.+.++.++++.++.++..| .+. ..+++.+.|++.++|+.+
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 468999999999999999999999999888764344443311 000 012678899999999888
Q ss_pred EEc-CCeEEEE
Q 029191 164 LWK-DGKKQAE 173 (197)
Q Consensus 164 ~~~-~G~~v~~ 173 (197)
++. +|+...+
T Consensus 152 lID~~G~I~~~ 162 (189)
T TIGR02661 152 LLDQDGKIRAK 162 (189)
T ss_pred EECCCCeEEEc
Confidence 884 7766543
No 110
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.11 E-value=1.9e-09 Score=82.64 Aligned_cols=93 Identities=14% Similarity=0.300 Sum_probs=73.2
Q ss_pred CCCeEEEEEecCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCC-------h---------------------HHHHH
Q 029191 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV-------P---------------------HKLVA 152 (197)
Q Consensus 102 ~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~-------~---------------------~~l~~ 152 (197)
.++++||+||++||+.|....+.+.++.++|. .++.++.|..+.. . ..+.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 58999999999999999999999999999994 4799999987642 1 14678
Q ss_pred HcCCCCCCEEEEEc-CCeEEEEEe---------CCCChHHHHHHHHHHhhcc
Q 029191 153 RAGVMKMPTIQLWK-DGKKQAEVI---------GGHKSYLVINEVREMIGNE 194 (197)
Q Consensus 153 ~~~i~~~Pt~~~~~-~G~~v~~~~---------G~~~~~~l~~~i~~~l~~~ 194 (197)
.|++...|+++++. +|+.+.... +..+...+.+.|++++...
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 155 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGK 155 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCC
Confidence 99999999999995 777654321 2234577888888888765
No 111
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.7e-10 Score=90.08 Aligned_cols=91 Identities=22% Similarity=0.440 Sum_probs=77.6
Q ss_pred cCeeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCChHHHHHHcCCC--
Q 029191 81 IPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVPHKLVARAGVM-- 157 (197)
Q Consensus 81 ~~v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~~~l~~~~~i~-- 157 (197)
..++-.++.+.++..+.. +..+.++|.|+|-|.+.|+.+.|.+.+|..+|. +..+|.+||+..-+ +.+.+|+|.
T Consensus 124 e~ikyf~~~q~~deel~r--nk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfp-d~a~kfris~s 200 (265)
T KOG0914|consen 124 ETIKYFTNMQLEDEELDR--NKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFP-DVAAKFRISLS 200 (265)
T ss_pred hheeeecchhhHHHHhcc--CCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCc-ChHHheeeccC
Confidence 345566566777776644 778899999999999999999999999999994 67999999999998 799999885
Q ss_pred ----CCCEEEEEcCCeEEEEE
Q 029191 158 ----KMPTIQLWKDGKKQAEV 174 (197)
Q Consensus 158 ----~~Pt~~~~~~G~~v~~~ 174 (197)
.+||+++|.+|+++.|.
T Consensus 201 ~~srQLPT~ilFq~gkE~~Rr 221 (265)
T KOG0914|consen 201 PGSRQLPTYILFQKGKEVSRR 221 (265)
T ss_pred cccccCCeEEEEccchhhhcC
Confidence 38999999999987653
No 112
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.10 E-value=4.4e-10 Score=86.24 Aligned_cols=95 Identities=25% Similarity=0.362 Sum_probs=87.8
Q ss_pred CccCeeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCC
Q 029191 79 VSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMK 158 (197)
Q Consensus 79 ~~~~v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~ 158 (197)
+.+...+|.+..+|-... .++..||+.||-|.-..|+-+...++.||+.+ -...|++||+...| -++.+++|+.
T Consensus 64 GhG~y~ev~~Ekdf~~~~----~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h-~eTrFikvnae~~P-Flv~kL~IkV 137 (211)
T KOG1672|consen 64 GHGEYEEVASEKDFFEEV----KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRH-VETRFIKVNAEKAP-FLVTKLNIKV 137 (211)
T ss_pred CCceEEEeccHHHHHHHh----hcCceEEEEEEcCCCcceehHHHHHHHHHHhc-ccceEEEEecccCc-eeeeeeeeeE
Confidence 456788999999998888 67999999999999999999999999999998 88999999999999 8999999999
Q ss_pred CCEEEEEcCCeEEEEEeCCCC
Q 029191 159 MPTIQLWKDGKKQAEVIGGHK 179 (197)
Q Consensus 159 ~Pt~~~~~~G~~v~~~~G~~~ 179 (197)
+|++.+|++|+.+.+++|...
T Consensus 138 LP~v~l~k~g~~~D~iVGF~d 158 (211)
T KOG1672|consen 138 LPTVALFKNGKTVDYVVGFTD 158 (211)
T ss_pred eeeEEEEEcCEEEEEEeeHhh
Confidence 999999999999999998543
No 113
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.07 E-value=5.4e-09 Score=75.36 Aligned_cols=104 Identities=11% Similarity=0.107 Sum_probs=81.0
Q ss_pred hHHHHHHHHHhcCCCeEEEEEecC----CCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChH-HHHHHcCCCCCCEEEE
Q 029191 90 SQFDRVIAEAQQLDESVIIVWMAS----WCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH-KLVARAGVMKMPTIQL 164 (197)
Q Consensus 90 ~~f~~~~~~a~~~~~~vvV~F~a~----wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~-~l~~~~~i~~~Pt~~~ 164 (197)
..|++++..++.+.|.++|++|++ ||..|+..... +++.+-++.++.+...|++..++ .++..+++.++|++.+
T Consensus 4 gs~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~ 82 (116)
T cd02991 4 GTYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAM 82 (116)
T ss_pred CcHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEE
Confidence 357777777778999999999999 99999653210 23333334568999999987763 6888999999999999
Q ss_pred Ec--C--CeEEEEEeCCCChHHHHHHHHHHhhcc
Q 029191 165 WK--D--GKKQAEVIGGHKSYLVINEVREMIGNE 194 (197)
Q Consensus 165 ~~--~--G~~v~~~~G~~~~~~l~~~i~~~l~~~ 194 (197)
+. + .+.+.+..|..+++++...|+.+++++
T Consensus 83 l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~~ 116 (116)
T cd02991 83 IMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDAN 116 (116)
T ss_pred EEecCCceEEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 92 3 345789999999999999999888764
No 114
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.04 E-value=2.1e-09 Score=70.03 Aligned_cols=69 Identities=20% Similarity=0.441 Sum_probs=52.7
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCCCCCEEEEEcCCeEEEEEeCCCChHHH
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYLV 183 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~~~l 183 (197)
+..|+++||++|+.+.+.+++ .++.+..+|++.++. ++.+.+++.++|++++. |+. +.|. +.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~-~~--- 66 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGF-DP--- 66 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeC-CH---
Confidence 568999999999999998865 457889999988762 35677999999999984 654 4664 44
Q ss_pred HHHHHHHh
Q 029191 184 INEVREMI 191 (197)
Q Consensus 184 ~~~i~~~l 191 (197)
+.|+++|
T Consensus 67 -~~i~~~i 73 (74)
T TIGR02196 67 -EKLDQLL 73 (74)
T ss_pred -HHHHHHh
Confidence 4555554
No 115
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.02 E-value=1.9e-09 Score=81.09 Aligned_cols=82 Identities=20% Similarity=0.138 Sum_probs=60.7
Q ss_pred CCCeEEEEEecCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCC--------Ch--HHHHH------------------
Q 029191 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNA--------VP--HKLVA------------------ 152 (197)
Q Consensus 102 ~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~--------~~--~~l~~------------------ 152 (197)
.+++|+|.|||+||+ |+...|.+.++.++|+ .++.++.|.++. .. .+.++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~ 99 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE 99 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence 489999999999999 9999999999999995 468888887642 11 02222
Q ss_pred ----HcC--CCCCC-----------EEEEE-cCCeEEEEEeCCCChHHHH
Q 029191 153 ----RAG--VMKMP-----------TIQLW-KDGKKQAEVIGGHKSYLVI 184 (197)
Q Consensus 153 ----~~~--i~~~P-----------t~~~~-~~G~~v~~~~G~~~~~~l~ 184 (197)
.|+ +.++| |.+++ ++|+.+.++.|..+.+++.
T Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~ 149 (152)
T cd00340 100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELE 149 (152)
T ss_pred CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHH
Confidence 122 24466 56666 7999999999988875443
No 116
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.00 E-value=2.9e-09 Score=80.17 Aligned_cols=91 Identities=15% Similarity=0.087 Sum_probs=67.4
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECC-------CChH---HHHH-----------------
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVN-------AVPH---KLVA----------------- 152 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~-------~~~~---~l~~----------------- 152 (197)
-.++++||.|||+||++|+...|.+.++.++|+ .++.++.|+++ +... +.++
T Consensus 20 ~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~ 99 (153)
T TIGR02540 20 YRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILG 99 (153)
T ss_pred hCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCC
Confidence 348899999999999999999999999999995 46889888862 1111 1221
Q ss_pred -------HcCC---CCCCE----EEEE-cCCeEEEEEeCCCChHHHHHHHHHHh
Q 029191 153 -------RAGV---MKMPT----IQLW-KDGKKQAEVIGGHKSYLVINEVREMI 191 (197)
Q Consensus 153 -------~~~i---~~~Pt----~~~~-~~G~~v~~~~G~~~~~~l~~~i~~~l 191 (197)
.|.+ .++|+ .+++ ++|+.+.++.|..+.+++...|+++|
T Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 100 SEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred CCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 1211 24785 5555 78999999999999987777777654
No 117
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.96 E-value=6.1e-09 Score=68.81 Aligned_cols=57 Identities=32% Similarity=0.563 Sum_probs=43.5
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHH-----cCCCCCCEEEEEcCCeEE
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVAR-----AGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~-----~~i~~~Pt~~~~~~G~~v 171 (197)
++.||++||++|+.+++.+.++. +.+-.+|+++++ +.... +++.++|++ ++.+|..+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~-~~~~~~~~~~~~~~~vP~i-~~~~g~~l 63 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDE-GAADRVVSVNNGNMTVPTV-KFADGSFL 63 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCH-hHHHHHHHHhCCCceeCEE-EECCCeEe
Confidence 67899999999999999987653 445578888776 34444 389999997 57788654
No 118
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.94 E-value=3.4e-09 Score=79.34 Aligned_cols=71 Identities=21% Similarity=0.390 Sum_probs=59.3
Q ss_pred CCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCC---eEEEEEECCCChH------------------------HHHHHc
Q 029191 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPR---LRFYNVDVNAVPH------------------------KLVARA 154 (197)
Q Consensus 102 ~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~vd~~~~~~------------------------~l~~~~ 154 (197)
.+|.|.++|.|.||++|+.+-|.+.++.++...+ +.++.|+.|.... .+..+|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 5799999999999999999999999998887443 7777787775542 578899
Q ss_pred CCCCCCEEEEEc-CCeEEE
Q 029191 155 GVMKMPTIQLWK-DGKKQA 172 (197)
Q Consensus 155 ~i~~~Pt~~~~~-~G~~v~ 172 (197)
+|.++|++.+.+ +|..+.
T Consensus 112 ~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVT 130 (157)
T ss_pred ccCcCceeEEecCCCCEeh
Confidence 999999999995 786663
No 119
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.93 E-value=1.2e-08 Score=75.12 Aligned_cols=83 Identities=16% Similarity=0.085 Sum_probs=67.0
Q ss_pred CCCeEEEEEe-cCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCCh--------------------HHHHHHcCCCCC
Q 029191 102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP--------------------HKLVARAGVMKM 159 (197)
Q Consensus 102 ~~~~vvV~F~-a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~--------------------~~l~~~~~i~~~ 159 (197)
.+++++|.|| +.||+.|....+.+.++.+++. .++.++.|..+... ..+.+.|++...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 3889999999 5899999999999999998884 46788887765332 158889999998
Q ss_pred ---------CEEEEEc-CCeEEEEEeCCCChHHHH
Q 029191 160 ---------PTIQLWK-DGKKQAEVIGGHKSYLVI 184 (197)
Q Consensus 160 ---------Pt~~~~~-~G~~v~~~~G~~~~~~l~ 184 (197)
|+.+++. +|+.+..+.|......+.
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~ 136 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAE 136 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchHH
Confidence 8999995 799888999988764333
No 120
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.92 E-value=7.6e-09 Score=64.16 Aligned_cols=60 Identities=35% Similarity=0.677 Sum_probs=51.5
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHH---HHcCCCCCCEEEEEcCC
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLV---ARAGVMKMPTIQLWKDG 168 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~---~~~~i~~~Pt~~~~~~G 168 (197)
++.||++||++|+.+.+.+.++ +....++.+..+|++... ... ..+++.++|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDP-ALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCCh-HHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998 444478999999999887 343 37899999999999877
No 121
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.92 E-value=9.3e-09 Score=74.20 Aligned_cols=83 Identities=20% Similarity=0.532 Sum_probs=57.4
Q ss_pred ChhHHHHHHHHHhcCCCeEEEEEecC-------CCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh------HHHHH--
Q 029191 88 SESQFDRVIAEAQQLDESVIIVWMAS-------WCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP------HKLVA-- 152 (197)
Q Consensus 88 s~~~f~~~~~~a~~~~~~vvV~F~a~-------wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~------~~l~~-- 152 (197)
+-++|.+.+.....++++++|.|+++ |||.|....|.+++.-+....+..++.|.+...+ +....
T Consensus 4 gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p 83 (119)
T PF06110_consen 4 GYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDP 83 (119)
T ss_dssp CHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--
T ss_pred CHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcc
Confidence 45778887765336789999999964 9999999999999988776567899988884322 13554
Q ss_pred HcCCCCCCEEEEEcCCeE
Q 029191 153 RAGVMKMPTIQLWKDGKK 170 (197)
Q Consensus 153 ~~~i~~~Pt~~~~~~G~~ 170 (197)
+++++++||++-+..++.
T Consensus 84 ~~~l~~IPTLi~~~~~~r 101 (119)
T PF06110_consen 84 DLKLKGIPTLIRWETGER 101 (119)
T ss_dssp CC---SSSEEEECTSS-E
T ss_pred eeeeeecceEEEECCCCc
Confidence 599999999999988744
No 122
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.91 E-value=2.2e-10 Score=90.34 Aligned_cols=97 Identities=30% Similarity=0.422 Sum_probs=81.7
Q ss_pred eeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHh-CCCeEEEEEECCCChHHHHHHcCCCCCCE
Q 029191 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVNAVPHKLVARAGVMKMPT 161 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~-~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt 161 (197)
++.++ .+++...+ ..-++++|+||||+.|+.+.|.|+.++.-- +-.|.+++||++.++ .+.-+|-+.++||
T Consensus 26 ~~~~~-eenw~~~l------~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~np-gLsGRF~vtaLpt 97 (248)
T KOG0913|consen 26 LTRID-EENWKELL------TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNP-GLSGRFLVTALPT 97 (248)
T ss_pred eEEec-ccchhhhh------chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEecc-ccceeeEEEecce
Confidence 44444 68899988 667799999999999999999999988764 347999999999999 6899999999999
Q ss_pred EEEEcCCeEEEEEeCCCChHHHHHHHH
Q 029191 162 IQLWKDGKKQAEVIGGHKSYLVINEVR 188 (197)
Q Consensus 162 ~~~~~~G~~v~~~~G~~~~~~l~~~i~ 188 (197)
|.-.++|. ..+|.|.++...++.++.
T Consensus 98 IYHvkDGe-FrrysgaRdk~dfisf~~ 123 (248)
T KOG0913|consen 98 IYHVKDGE-FRRYSGARDKNDFISFEE 123 (248)
T ss_pred EEEeeccc-cccccCcccchhHHHHHH
Confidence 99999995 469999999965555543
No 123
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.88 E-value=3.7e-08 Score=70.61 Aligned_cols=87 Identities=23% Similarity=0.377 Sum_probs=77.2
Q ss_pred CeeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCE
Q 029191 82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPT 161 (197)
Q Consensus 82 ~v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt 161 (197)
.+.+++|..+.+.++.. ...+.|+|.|...|.+.|..+...|.++++....-+.++-+|+++.+ ++.+.|++...||
T Consensus 4 lLp~L~s~~~VdqaI~~--t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~-~~~~~~~l~~p~t 80 (142)
T KOG3414|consen 4 LLPTLHSGWEVDQAILS--TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVP-DFVKMYELYDPPT 80 (142)
T ss_pred eccccccHHHHHHHHhc--ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhh-hhhhhhcccCCce
Confidence 35677888889888876 67999999999999999999999999999998666899999999998 7999999999999
Q ss_pred EEEEcCCeEE
Q 029191 162 IQLWKDGKKQ 171 (197)
Q Consensus 162 ~~~~~~G~~v 171 (197)
++||-+++.+
T Consensus 81 vmfFfn~kHm 90 (142)
T KOG3414|consen 81 VMFFFNNKHM 90 (142)
T ss_pred EEEEEcCceE
Confidence 9999777654
No 124
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.88 E-value=2e-08 Score=76.17 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=51.3
Q ss_pred HHhcCCCeEEEEEecCCCHhHHHhhHH-H--HHHHHHhCCCeEEEEEECCCChHHHHHHc--------CCCCCCEEEEE-
Q 029191 98 EAQQLDESVIIVWMASWCRKCIYLKPK-L--EKLAADYHPRLRFYNVDVNAVPHKLVARA--------GVMKMPTIQLW- 165 (197)
Q Consensus 98 ~a~~~~~~vvV~F~a~wC~~C~~~~p~-l--~~la~~~~~~v~~~~vd~~~~~~~l~~~~--------~i~~~Pt~~~~- 165 (197)
.|+..+|+++|.++++||+.|+.|... + .++++.++.++.-++||.++.+ ++...| +..|+|+.+|+
T Consensus 32 ~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~P-did~~y~~~~~~~~~~gGwPl~vflt 110 (163)
T PF03190_consen 32 KAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERP-DIDKIYMNAVQAMSGSGGWPLTVFLT 110 (163)
T ss_dssp HHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-H-HHHHHHHHHHHHHHS---SSEEEEE-
T ss_pred HHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCc-cHHHHHHHHHHHhcCCCCCCceEEEC
Confidence 333789999999999999999998863 3 4566666556888999999998 677777 78899998888
Q ss_pred cCCeEEEE
Q 029191 166 KDGKKQAE 173 (197)
Q Consensus 166 ~~G~~v~~ 173 (197)
.+|+.+..
T Consensus 111 Pdg~p~~~ 118 (163)
T PF03190_consen 111 PDGKPFFG 118 (163)
T ss_dssp TTS-EEEE
T ss_pred CCCCeeee
Confidence 58888643
No 125
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=3.6e-08 Score=73.37 Aligned_cols=88 Identities=17% Similarity=0.323 Sum_probs=73.5
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHH---HHHHHHhCCCeEEEEEECCCCh---------------HHHHHHcCCCCCCEE
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVP---------------HKLVARAGVMKMPTI 162 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~---------------~~l~~~~~i~~~Pt~ 162 (197)
..++..++.|-++.|+.|.+++..+ +++.+-+.+.+.++.++++... .++++.|+|+++||+
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtf 119 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTF 119 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceE
Confidence 7799999999999999999999887 4555656677889999886443 279999999999999
Q ss_pred EEEc-CCeEEEEEeCCCChHHHHHHHH
Q 029191 163 QLWK-DGKKQAEVIGGHKSYLVINEVR 188 (197)
Q Consensus 163 ~~~~-~G~~v~~~~G~~~~~~l~~~i~ 188 (197)
+||+ +|+.+...-|..+++++...++
T Consensus 120 vFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 120 VFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred EEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 9995 7899999999999976655443
No 126
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.86 E-value=2.4e-08 Score=77.54 Aligned_cols=91 Identities=15% Similarity=0.159 Sum_probs=65.9
Q ss_pred CCCeE-EEEEecCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCC-------ChH---HH-HHH---------------
Q 029191 102 LDESV-IIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNA-------VPH---KL-VAR--------------- 153 (197)
Q Consensus 102 ~~~~v-vV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~-------~~~---~l-~~~--------------- 153 (197)
.++++ ++.+||+||++|+...|.+.++.++|. .++.++.|+++. ... .. .++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g 118 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG 118 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence 47754 456699999999999999999999995 358888887641 000 00 111
Q ss_pred ---------------------cCCCCCCE---EEEE-cCCeEEEEEeCCCChHHHHHHHHHHhh
Q 029191 154 ---------------------AGVMKMPT---IQLW-KDGKKQAEVIGGHKSYLVINEVREMIG 192 (197)
Q Consensus 154 ---------------------~~i~~~Pt---~~~~-~~G~~v~~~~G~~~~~~l~~~i~~~l~ 192 (197)
+++.++|+ .+++ ++|+.+.++.|..+.+.+.+.|.++++
T Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 119 ENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 13457794 3444 799999999999888888888887764
No 127
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.84 E-value=5.2e-08 Score=64.86 Aligned_cols=71 Identities=20% Similarity=0.331 Sum_probs=52.6
Q ss_pred EEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEEEEEeC-CCChHHHHHH
Q 029191 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIG-GHKSYLVINE 186 (197)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v~~~~G-~~~~~~l~~~ 186 (197)
|.+++++|+.|..+...++++++++ + +.+-.+|+...+ ++ .+|||.++|++++ ||+. ++.| ..+.+++.++
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~-~-i~~ei~~~~~~~-~~-~~ygv~~vPalvI--ng~~--~~~G~~p~~~el~~~ 74 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEEL-G-IEVEIIDIEDFE-EI-EKYGVMSVPALVI--NGKV--VFVGRVPSKEELKEL 74 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHT-T-EEEEEEETTTHH-HH-HHTT-SSSSEEEE--TTEE--EEESS--HHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhc-C-CeEEEEEccCHH-HH-HHcCCCCCCEEEE--CCEE--EEEecCCCHHHHHHH
Confidence 4447889999999999999999998 4 777777775554 56 9999999999977 7864 4688 6666444333
No 128
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.83 E-value=5.2e-08 Score=74.57 Aligned_cols=74 Identities=12% Similarity=0.083 Sum_probs=60.4
Q ss_pred CCCeEEEEEecCC-CHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh----------------------HHHHHHcCCCC
Q 029191 102 LDESVIIVWMASW-CRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP----------------------HKLVARAGVMK 158 (197)
Q Consensus 102 ~~~~vvV~F~a~w-C~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~----------------------~~l~~~~~i~~ 158 (197)
.+++++|.||+.| |++|....|.+.++++++ .++.++.|..|... ..+++.||+..
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~-~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~ 121 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL-DNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAI 121 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc-CCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCee
Confidence 4889999999999 999999999999999998 57888888776321 15788999988
Q ss_pred CC---------EEEEEc-CCeEEEEEeC
Q 029191 159 MP---------TIQLWK-DGKKQAEVIG 176 (197)
Q Consensus 159 ~P---------t~~~~~-~G~~v~~~~G 176 (197)
.| +.+++. +|+.+....+
T Consensus 122 ~~~~~~g~~~r~tfvId~~G~I~~~~~~ 149 (167)
T PRK00522 122 AEGPLKGLLARAVFVLDENNKVVYSELV 149 (167)
T ss_pred cccccCCceeeEEEEECCCCeEEEEEEC
Confidence 87 888885 8888777654
No 129
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.82 E-value=4.5e-08 Score=70.43 Aligned_cols=70 Identities=21% Similarity=0.501 Sum_probs=59.2
Q ss_pred CCCeEEEEEecC-CCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCChH--------------------HHHHHcCCC--
Q 029191 102 LDESVIIVWMAS-WCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVPH--------------------KLVARAGVM-- 157 (197)
Q Consensus 102 ~~~~vvV~F~a~-wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~~--------------------~l~~~~~i~-- 157 (197)
.+++++|.||+. ||++|+...+.+.++.++++ .++.++.|..+.... .+.+.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 379999999999 99999999999999999984 479999998875431 688999999
Q ss_pred ----CCCEEEEEc-CCeEE
Q 029191 158 ----KMPTIQLWK-DGKKQ 171 (197)
Q Consensus 158 ----~~Pt~~~~~-~G~~v 171 (197)
.+|+++++. +|+.+
T Consensus 104 ~~~~~~p~~~lid~~g~I~ 122 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIR 122 (124)
T ss_dssp TTSEESEEEEEEETTSBEE
T ss_pred cCCceEeEEEEECCCCEEE
Confidence 999999995 55544
No 130
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.81 E-value=1e-07 Score=75.94 Aligned_cols=85 Identities=18% Similarity=0.198 Sum_probs=66.6
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCC----------hHHHHHHcCCCCCCEEEEEc-CC-
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV----------PHKLVARAGVMKMPTIQLWK-DG- 168 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~----------~~~l~~~~~i~~~Pt~~~~~-~G- 168 (197)
-.++.-|+.||.+.|+.|+.+.|++..++++|+ +.+..|++|.. +.+++++++|..+|+++++. ++
T Consensus 118 la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~ 195 (215)
T PF13728_consen 118 LAQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTK 195 (215)
T ss_pred HhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCC
Confidence 447888999999999999999999999999984 55555666532 12689999999999999995 44
Q ss_pred eEEEEEeCCCChHHHHHHH
Q 029191 169 KKQAEVIGGHKSYLVINEV 187 (197)
Q Consensus 169 ~~v~~~~G~~~~~~l~~~i 187 (197)
+...--.|..+.++|.+.|
T Consensus 196 ~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 196 KWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred eEEEEeeecCCHHHHHHhh
Confidence 3445567989987666554
No 131
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.79 E-value=2.3e-07 Score=67.29 Aligned_cols=90 Identities=23% Similarity=0.342 Sum_probs=73.1
Q ss_pred eeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCC-E
Q 029191 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMP-T 161 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~P-t 161 (197)
+..+++..+.++++.. ..++.|++.|..+|-+.|+++...+.+++++.+.-..++.||+++.+ ++.+.|++. -| |
T Consensus 2 L~~L~s~~~VDqAI~~--e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vp-dfn~~yel~-dP~t 77 (133)
T PF02966_consen 2 LPHLHSGWHVDQAILS--EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVP-DFNQMYELY-DPCT 77 (133)
T ss_dssp SEEE-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTH-CCHHHTTS--SSEE
T ss_pred CcccCccchHHHHHhc--cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccch-hhhcccccC-CCeE
Confidence 3567788899988877 77999999999999999999999999999999777999999999998 799999999 77 6
Q ss_pred EEEEcCCeEEEEEeC
Q 029191 162 IQLWKDGKKQAEVIG 176 (197)
Q Consensus 162 ~~~~~~G~~v~~~~G 176 (197)
++||-+++.+.--.|
T Consensus 78 vmFF~rnkhm~vD~G 92 (133)
T PF02966_consen 78 VMFFFRNKHMMVDFG 92 (133)
T ss_dssp EEEEETTEEEEEESS
T ss_pred EEEEecCeEEEEEec
Confidence 777767776543333
No 132
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=4.3e-09 Score=82.69 Aligned_cols=90 Identities=17% Similarity=0.293 Sum_probs=81.3
Q ss_pred eeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEE
Q 029191 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~ 162 (197)
++.+...++| .. ..++.+++.|||+||.+|+++..+++.+++.. .++.+++++++..+ +++..+.+.++|++
T Consensus 3 v~~i~~~~~f--~~----~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~-eis~~~~v~~vp~~ 74 (227)
T KOG0911|consen 3 VQFIVFQEQF--LD----QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFP-EISNLIAVEAVPYF 74 (227)
T ss_pred ceeehhHHHH--HH----hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhh-HHHHHHHHhcCcee
Confidence 5566667788 34 57999999999999999999999999999998 89999999999999 89999999999999
Q ss_pred EEEcCCeEEEEEeCCCCh
Q 029191 163 QLWKDGKKQAEVIGGHKS 180 (197)
Q Consensus 163 ~~~~~G~~v~~~~G~~~~ 180 (197)
.++..|+.+.+..|....
T Consensus 75 ~~~~~~~~v~~l~~~~~~ 92 (227)
T KOG0911|consen 75 VFFFLGEKVDRLSGADPP 92 (227)
T ss_pred eeeecchhhhhhhccCcH
Confidence 999999999888887765
No 133
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.79 E-value=6.2e-08 Score=74.43 Aligned_cols=89 Identities=8% Similarity=0.110 Sum_probs=66.4
Q ss_pred CCCeEEEEEe-cCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCCh---------------------------HHHHH
Q 029191 102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP---------------------------HKLVA 152 (197)
Q Consensus 102 ~~~~vvV~F~-a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~---------------------------~~l~~ 152 (197)
.++++||.|| +.||++|....+.+.+++++|. .++.++.|.+|... ..+.+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 3789999999 8999999999999999999984 45777777665321 15778
Q ss_pred HcCCC------CCCEEEEEc-CCeEEEEEeCCC----ChHHHHHHHHHH
Q 029191 153 RAGVM------KMPTIQLWK-DGKKQAEVIGGH----KSYLVINEVREM 190 (197)
Q Consensus 153 ~~~i~------~~Pt~~~~~-~G~~v~~~~G~~----~~~~l~~~i~~~ 190 (197)
.|++. ..|+.+++. +|+.+..+.+.. +.+++.+.|+.+
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 89987 578898885 888877776543 344555666443
No 134
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.78 E-value=3.3e-08 Score=66.43 Aligned_cols=61 Identities=26% Similarity=0.395 Sum_probs=47.1
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChH----HHHHHcCCCCCCEEEEEcCCeEE
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH----KLVARAGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~----~l~~~~~i~~~Pt~~~~~~G~~v 171 (197)
++.|+++||++|+.+.+.++++. ..+.+.++.+|.+.+.. .+.+.+++.++|++++ +|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 57899999999999999999876 32447788888775542 2566679999999854 77665
No 135
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.78 E-value=3.3e-08 Score=72.56 Aligned_cols=85 Identities=25% Similarity=0.429 Sum_probs=52.6
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHc---CCCCCCEEEEEc-CCeEEEEEeC
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARA---GVMKMPTIQLWK-DGKKQAEVIG 176 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~---~i~~~Pt~~~~~-~G~~v~~~~G 176 (197)
...+.-++.|..+|||.|+..-|.+.++++.. +++.+-.+..|++. ++..+| |..++|+++++. +|+++.++ |
T Consensus 39 ~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~-p~i~~~~i~rd~~~-el~~~~lt~g~~~IP~~I~~d~~~~~lg~w-g 115 (129)
T PF14595_consen 39 IQKPYNILVITETWCGDCARNVPVLAKIAEAN-PNIEVRIILRDENK-ELMDQYLTNGGRSIPTFIFLDKDGKELGRW-G 115 (129)
T ss_dssp --S-EEEEEE--TT-HHHHHHHHHHHHHHHH--TTEEEEEE-HHHHH-HHTTTTTT-SS--SSEEEEE-TT--EEEEE-E
T ss_pred cCCCcEEEEEECCCchhHHHHHHHHHHHHHhC-CCCeEEEEEecCCh-hHHHHHHhCCCeecCEEEEEcCCCCEeEEE-c
Confidence 44667888899999999999999999999987 78888888777776 455544 788999999995 67777675 5
Q ss_pred CCChHHHHHHHHHHhhc
Q 029191 177 GHKSYLVINEVREMIGN 193 (197)
Q Consensus 177 ~~~~~~l~~~i~~~l~~ 193 (197)
.+.. .+.+++++
T Consensus 116 erP~-----~~~~~~~~ 127 (129)
T PF14595_consen 116 ERPK-----EVQELVDE 127 (129)
T ss_dssp SS-H-----HHH-----
T ss_pred CCCH-----HHhhcccc
Confidence 4553 44444443
No 136
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.75 E-value=1.5e-07 Score=70.70 Aligned_cols=81 Identities=14% Similarity=0.127 Sum_probs=63.0
Q ss_pred CCCeEEEEEecC-CCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCCh--------------------HHHHHHcCCCCC
Q 029191 102 LDESVIIVWMAS-WCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP--------------------HKLVARAGVMKM 159 (197)
Q Consensus 102 ~~~~vvV~F~a~-wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~--------------------~~l~~~~~i~~~ 159 (197)
.+++++|.||+. ||+.|....+.+.++.++++ .++.++.|..+... +.+.+.|++...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 478999999976 68889999999999999884 46888888776332 157889998764
Q ss_pred ------------CEEEEE-cCCeEEEEEeCCCChHH
Q 029191 160 ------------PTIQLW-KDGKKQAEVIGGHKSYL 182 (197)
Q Consensus 160 ------------Pt~~~~-~~G~~v~~~~G~~~~~~ 182 (197)
|+.+++ ++|+.+..+.|....+.
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~ 144 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNH 144 (154)
T ss_pred cccccccccCcceEEEEECCCCEEEEEEcCCCcchh
Confidence 666777 59998889998766643
No 137
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.75 E-value=9e-08 Score=74.57 Aligned_cols=86 Identities=15% Similarity=0.167 Sum_probs=63.0
Q ss_pred CCCeEEEEEe-cCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCC------------------------hHHHHHHcC
Q 029191 102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV------------------------PHKLVARAG 155 (197)
Q Consensus 102 ~~~~vvV~F~-a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~------------------------~~~l~~~~~ 155 (197)
.++++||.|| +.||+.|....|.+.++.+++. .++.++.|.+|.. ...+++.|+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 4789999999 9999999999999999998883 4566777765531 116788999
Q ss_pred CC------CCCEEEEE-cCCeEEEEEeCC----CChHHHHHHH
Q 029191 156 VM------KMPTIQLW-KDGKKQAEVIGG----HKSYLVINEV 187 (197)
Q Consensus 156 i~------~~Pt~~~~-~~G~~v~~~~G~----~~~~~l~~~i 187 (197)
+. ..|+.+++ ++|+....+.+. +..+++.+.|
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l 152 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKI 152 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 86 46988888 588876665442 2444444444
No 138
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.75 E-value=1.6e-07 Score=69.63 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=35.5
Q ss_pred CCeEEEEEecCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCC
Q 029191 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV 146 (197)
Q Consensus 103 ~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~ 146 (197)
+..+|+.|++.||+.|+...|.+.++.+++. .++.++.|..+..
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~ 68 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP 68 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence 4455555569999999999999999999984 5688888887644
No 139
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.73 E-value=1.8e-07 Score=69.55 Aligned_cols=75 Identities=12% Similarity=0.229 Sum_probs=58.2
Q ss_pred CeEEEEEe-cCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCCh----------------------HHHHHHcCCCC-
Q 029191 104 ESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP----------------------HKLVARAGVMK- 158 (197)
Q Consensus 104 ~~vvV~F~-a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~----------------------~~l~~~~~i~~- 158 (197)
++++|.|| ++||+.|....|.+.++.+++. .++.++.|..+... ..+.+.|++..
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence 88888887 9999999999999999999984 46778777765311 24778888873
Q ss_pred ---CC--EEEEE-cCCeEEEEEeCCC
Q 029191 159 ---MP--TIQLW-KDGKKQAEVIGGH 178 (197)
Q Consensus 159 ---~P--t~~~~-~~G~~v~~~~G~~ 178 (197)
+| +.+++ ++|+.+..+.|..
T Consensus 109 ~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 109 DLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred cCCCccceEEEECCCCEEEEEEecCC
Confidence 33 77777 4898888888865
No 140
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.73 E-value=9.6e-08 Score=64.83 Aligned_cols=63 Identities=25% Similarity=0.419 Sum_probs=51.2
Q ss_pred EEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh---HHHHHHcC--CCCCCEEEEEcCCeEE
Q 029191 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP---HKLVARAG--VMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 106 vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~---~~l~~~~~--i~~~Pt~~~~~~G~~v 171 (197)
-++.|+.+||++|++....|+++..++ .++.+..+|++.+. +++....+ +..+|++++ +|+.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~-~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~i 69 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER-DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHI 69 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc-cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEE
Confidence 378899999999999999999999887 78999999998763 24555555 488999875 88765
No 141
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.73 E-value=1.4e-07 Score=69.82 Aligned_cols=75 Identities=15% Similarity=0.121 Sum_probs=60.9
Q ss_pred CCCeEEEEEecCC-CHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh----------------------HHHHHHcCCCC
Q 029191 102 LDESVIIVWMASW-CRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP----------------------HKLVARAGVMK 158 (197)
Q Consensus 102 ~~~~vvV~F~a~w-C~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~----------------------~~l~~~~~i~~ 158 (197)
.++++||.||+.| |++|+...|.+.++.+++ .++.++.|+++... ..+.+.|++..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKL-DNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc-CCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence 4789999999998 699999999999999998 68888888886321 25677888864
Q ss_pred ------CCEEEEEc-CCeEEEEEeCC
Q 029191 159 ------MPTIQLWK-DGKKQAEVIGG 177 (197)
Q Consensus 159 ------~Pt~~~~~-~G~~v~~~~G~ 177 (197)
.|+.+++. +|+.+....|.
T Consensus 104 ~~~~~~~~~~~iid~~G~I~~~~~~~ 129 (143)
T cd03014 104 KDLGLLARAVFVIDENGKVIYVELVP 129 (143)
T ss_pred ccCCccceEEEEEcCCCeEEEEEECC
Confidence 68888885 89888777764
No 142
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=9.2e-08 Score=68.06 Aligned_cols=79 Identities=19% Similarity=0.545 Sum_probs=64.8
Q ss_pred ChhHHHHHHHHHhcCCCeEEEEEec--------CCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh------HHHHHH
Q 029191 88 SESQFDRVIAEAQQLDESVIIVWMA--------SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP------HKLVAR 153 (197)
Q Consensus 88 s~~~f~~~~~~a~~~~~~vvV~F~a--------~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~------~~l~~~ 153 (197)
..++|++.+.+. .+++.++|.|++ +|||.|.+..|.+.+.-+....++.|+.|++..-+ +.+...
T Consensus 11 g~e~~~~~~~~~-~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d 89 (128)
T KOG3425|consen 11 GYESFEETLKNV-ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKD 89 (128)
T ss_pred hHHHHHHHHHHH-hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccC
Confidence 367888888764 346669999997 59999999999999988877788999999996543 256777
Q ss_pred cCC-CCCCEEEEEcC
Q 029191 154 AGV-MKMPTIQLWKD 167 (197)
Q Consensus 154 ~~i-~~~Pt~~~~~~ 167 (197)
.++ .++||++-+++
T Consensus 90 ~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 90 PGILTAVPTLLRWKR 104 (128)
T ss_pred CCceeecceeeEEcC
Confidence 777 99999999985
No 143
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.69 E-value=3.6e-07 Score=64.29 Aligned_cols=89 Identities=21% Similarity=0.355 Sum_probs=66.5
Q ss_pred eecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh---HHHHHHcCCCC-C
Q 029191 84 TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP---HKLVARAGVMK-M 159 (197)
Q Consensus 84 ~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~---~~l~~~~~i~~-~ 159 (197)
..+++.++|++++.. +..++++|+=.+++||-.......+++......+++.++.+|+-+.. +.++.+|||+. -
T Consensus 2 ~~L~t~eql~~i~~~--S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeS 79 (105)
T PF11009_consen 2 KPLTTEEQLEEILEE--SKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHES 79 (105)
T ss_dssp -E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----S
T ss_pred CccCCHHHHHHHHHh--cccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCC
Confidence 467889999999976 55999999999999999999999999999988445999999998776 37899999985 9
Q ss_pred CEEEEEcCCeEEEEE
Q 029191 160 PTIQLWKDGKKQAEV 174 (197)
Q Consensus 160 Pt~~~~~~G~~v~~~ 174 (197)
|.++++++|+.+..-
T Consensus 80 PQ~ili~~g~~v~~a 94 (105)
T PF11009_consen 80 PQVILIKNGKVVWHA 94 (105)
T ss_dssp SEEEEEETTEEEEEE
T ss_pred CcEEEEECCEEEEEC
Confidence 999999999987543
No 144
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.59 E-value=6.9e-07 Score=69.42 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=36.7
Q ss_pred CCCeEEEEEecCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECC
Q 029191 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVN 144 (197)
Q Consensus 102 ~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~ 144 (197)
.++++||.|||+||+.|+. .|.|+++.++|+ .++.++.+.++
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 4899999999999999975 889999999995 46888888885
No 145
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.55 E-value=8.5e-07 Score=57.40 Aligned_cols=62 Identities=23% Similarity=0.382 Sum_probs=43.9
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCCCCCEEEEEcCCeEEEEEeCCCC
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMKMPTIQLWKDGKKQAEVIGGHK 179 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~ 179 (197)
++.|+++||++|+.+...+.+ .++.+..+|++.+.. ++.+..++.++|++++ +|+ ...|...
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~------~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g~~~ 66 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE------RGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSGFRP 66 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH------CCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEecCCH
Confidence 578999999999999888866 346777788877652 2223337899999976 553 3356443
No 146
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.54 E-value=9.3e-07 Score=64.91 Aligned_cols=78 Identities=14% Similarity=0.173 Sum_probs=62.3
Q ss_pred CCCeEEEEEe-cCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCCh---------------------HHHHHHcCCCC
Q 029191 102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP---------------------HKLVARAGVMK 158 (197)
Q Consensus 102 ~~~~vvV~F~-a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~---------------------~~l~~~~~i~~ 158 (197)
.+++++|.|| +.||+.|....|.+.++.+++. .++.++.|..+... ..+.+.|++..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 4899999999 7899999999999999999883 56888888775321 15778899887
Q ss_pred CC---------EEEEEc-CCeEEEEEeCCCC
Q 029191 159 MP---------TIQLWK-DGKKQAEVIGGHK 179 (197)
Q Consensus 159 ~P---------t~~~~~-~G~~v~~~~G~~~ 179 (197)
.| +++++. +|+.+..+.|...
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 76 677775 6888888888665
No 147
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.54 E-value=3.5e-07 Score=67.39 Aligned_cols=44 Identities=11% Similarity=0.252 Sum_probs=38.3
Q ss_pred CCCeEEEEEecCCCHh-HHHhhHHHHHHHHHhCC----CeEEEEEECCC
Q 029191 102 LDESVIIVWMASWCRK-CIYLKPKLEKLAADYHP----RLRFYNVDVNA 145 (197)
Q Consensus 102 ~~~~vvV~F~a~wC~~-C~~~~p~l~~la~~~~~----~v~~~~vd~~~ 145 (197)
.+++++|.||++||++ |....+.+.++.++++. ++.++.|..|.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 4789999999999998 99999999999999843 48888888753
No 148
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.52 E-value=1.9e-06 Score=67.15 Aligned_cols=89 Identities=10% Similarity=0.101 Sum_probs=65.9
Q ss_pred CCCeEEEEEe-cCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCCh------------------------HHHHHHcC
Q 029191 102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP------------------------HKLVARAG 155 (197)
Q Consensus 102 ~~~~vvV~F~-a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~------------------------~~l~~~~~ 155 (197)
.+++++|.|| +.||+.|....+.+.++.+++. .++.++-|..|... ..+++.|+
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 4789999999 9999999999999999999983 45777777765321 26889999
Q ss_pred C----CCC--CEEEEEc-CCeEEEEEeC----CCChHHHHHHHHHH
Q 029191 156 V----MKM--PTIQLWK-DGKKQAEVIG----GHKSYLVINEVREM 190 (197)
Q Consensus 156 i----~~~--Pt~~~~~-~G~~v~~~~G----~~~~~~l~~~i~~~ 190 (197)
+ .++ |+.+++. +|+....+.. .++.+++.+.|+++
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 8 356 9999995 8877554433 24666666666543
No 149
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.51 E-value=2.2e-06 Score=69.74 Aligned_cols=91 Identities=11% Similarity=0.133 Sum_probs=72.6
Q ss_pred CCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh----------HHHHHHcCCCCCCEEEEEc-C-Ce
Q 029191 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP----------HKLVARAGVMKMPTIQLWK-D-GK 169 (197)
Q Consensus 102 ~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~----------~~l~~~~~i~~~Pt~~~~~-~-G~ 169 (197)
.++.-++.||.+.|+.|+++.|++..++++|+ +.+.-|++|... ...+++++|..+|++++.. + ++
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~ 226 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQK 226 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCc
Confidence 36688999999999999999999999999995 555556555441 2578999999999999995 4 34
Q ss_pred EEEEEeCCCChHHHHHHHHHHhhcc
Q 029191 170 KQAEVIGGHKSYLVINEVREMIGNE 194 (197)
Q Consensus 170 ~v~~~~G~~~~~~l~~~i~~~l~~~ 194 (197)
...--.|..+.++|.+.|...+..+
T Consensus 227 ~~pv~~G~iS~deL~~Ri~~v~~~f 251 (256)
T TIGR02739 227 MSPLAYGFISQDELKERILNVLTQF 251 (256)
T ss_pred EEEEeeccCCHHHHHHHHHHHHhcc
Confidence 4445679999999988888877654
No 150
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.51 E-value=5.2e-07 Score=61.47 Aligned_cols=78 Identities=22% Similarity=0.400 Sum_probs=55.9
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh---HHHHHHcCC--CCCCEEEEEcCCeEEEEEeCCCChH
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP---HKLVARAGV--MKMPTIQLWKDGKKQAEVIGGHKSY 181 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~---~~l~~~~~i--~~~Pt~~~~~~G~~v~~~~G~~~~~ 181 (197)
++.|+.+||++|.+.+..|.++..++ +.+.+..+|++... .++....+- .++|++++ +|+.+ .| .
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~-~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i---gG-~--- 71 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER-ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV---GG-C--- 71 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc-CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe---cC-H---
Confidence 67889999999999999999987765 56888888887543 246666664 79999965 77654 23 2
Q ss_pred HHHHHHHHHhhccCCC
Q 029191 182 LVINEVREMIGNENNV 197 (197)
Q Consensus 182 ~l~~~i~~~l~~~~~~ 197 (197)
+.|.+++.++.+|
T Consensus 72 ---~dl~~~~~~~~~~ 84 (86)
T TIGR02183 72 ---TDFEQLVKENFDI 84 (86)
T ss_pred ---HHHHHHHHhcccc
Confidence 3455566655543
No 151
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.49 E-value=1.8e-06 Score=68.07 Aligned_cols=89 Identities=9% Similarity=0.152 Sum_probs=64.4
Q ss_pred CCeEEE-EEecCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCC--------------------------hHHHHHHc
Q 029191 103 DESVII-VWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV--------------------------PHKLVARA 154 (197)
Q Consensus 103 ~~~vvV-~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~--------------------------~~~l~~~~ 154 (197)
++.++| .||+.||+.|....+.+.++.+++. .++.++.|.+|.. ...+++.|
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~y 106 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREY 106 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHc
Confidence 666655 6899999999999999999999884 4577777766521 02688899
Q ss_pred CCC------CCCEEEEEc-CCeEEEEE----eCCCChHHHHHHHHHHh
Q 029191 155 GVM------KMPTIQLWK-DGKKQAEV----IGGHKSYLVINEVREMI 191 (197)
Q Consensus 155 ~i~------~~Pt~~~~~-~G~~v~~~----~G~~~~~~l~~~i~~~l 191 (197)
|+. .+|+++++. +|+..... .+.++.+++...|..+.
T Consensus 107 gv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 107 NLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred CCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 984 589999995 77665433 33467777776666554
No 152
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.46 E-value=3.1e-06 Score=68.59 Aligned_cols=91 Identities=13% Similarity=0.079 Sum_probs=69.9
Q ss_pred CCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh--------HHHHHHcCCCCCCEEEEEc-C-CeEEE
Q 029191 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP--------HKLVARAGVMKMPTIQLWK-D-GKKQA 172 (197)
Q Consensus 103 ~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~--------~~l~~~~~i~~~Pt~~~~~-~-G~~v~ 172 (197)
++.-|++||.+.|+.|+.+.|++..++++|+-.|..+.+|-...+ ...+.+++|..+|+++++. + ++...
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~p 222 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRP 222 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEE
Confidence 568899999999999999999999999999544555555532221 1467899999999999995 3 34455
Q ss_pred EEeCCCChHHHHHHHHHHhhc
Q 029191 173 EVIGGHKSYLVINEVREMIGN 193 (197)
Q Consensus 173 ~~~G~~~~~~l~~~i~~~l~~ 193 (197)
--.|..+.++|.+.|......
T Consensus 223 v~~G~iS~deL~~Ri~~v~t~ 243 (248)
T PRK13703 223 LSYGFITQDDLAKRFLNVSTD 243 (248)
T ss_pred EeeccCCHHHHHHHHHHHHhc
Confidence 667999998888888776544
No 153
>PRK15000 peroxidase; Provisional
Probab=98.45 E-value=2.1e-06 Score=67.66 Aligned_cols=89 Identities=9% Similarity=0.165 Sum_probs=67.3
Q ss_pred CCCeEEEEEec-CCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCCh---------------------------HHHHH
Q 029191 102 LDESVIIVWMA-SWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP---------------------------HKLVA 152 (197)
Q Consensus 102 ~~~~vvV~F~a-~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~---------------------------~~l~~ 152 (197)
.+++++|.||+ .||+.|....+.+.++.+++. .++.++.|.+|... ..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 48899999999 599999999999999999984 45777777776221 15778
Q ss_pred HcCCC------CCCEEEEEc-CCeEEEEEeCC----CChHHHHHHHHHH
Q 029191 153 RAGVM------KMPTIQLWK-DGKKQAEVIGG----HKSYLVINEVREM 190 (197)
Q Consensus 153 ~~~i~------~~Pt~~~~~-~G~~v~~~~G~----~~~~~l~~~i~~~ 190 (197)
.|++. ++|+.+++. +|+....+.|. ++.+++.+.++++
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 89987 799999996 88876665552 4555666655543
No 154
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.43 E-value=2.7e-06 Score=53.70 Aligned_cols=56 Identities=27% Similarity=0.476 Sum_probs=45.3
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh---HHHHHHcCCCCCCEEEEEcCCeE
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP---HKLVARAGVMKMPTIQLWKDGKK 170 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~---~~l~~~~~i~~~Pt~~~~~~G~~ 170 (197)
++.|+.+||++|+..+..|++ .++.+-.+|++.++ +++.+..+..++|++++ +|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~------~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE------KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH------TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH------cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 578999999999999999954 55888999998885 24455559999999997 7764
No 155
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.38 E-value=1.7e-06 Score=61.16 Aligned_cols=93 Identities=17% Similarity=0.233 Sum_probs=72.6
Q ss_pred eeecCChhHHHHHHHHHhcCCCeEEEEEecCC--CHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCC
Q 029191 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASW--CRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMP 160 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~w--C~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~P 160 (197)
+..++ .+++++.+ ..+...++.|.... |+.|....-++.+|.+.+.+.+..+.++-+... ++..+|++..+|
T Consensus 11 ~~~vd-~~~ld~~l----~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~-~L~~r~gv~~~P 84 (107)
T PF07449_consen 11 WPRVD-ADTLDAFL----AAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAER-ALAARFGVRRWP 84 (107)
T ss_dssp EEEE--CCCHHHHH----HCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHH-HHHHHHT-TSSS
T ss_pred Ceeec-hhhHHHHH----hCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHH-HHHHHhCCccCC
Confidence 44555 57788888 56777777766543 566777777999999999777888888844444 799999999999
Q ss_pred EEEEEcCCeEEEEEeCCCChH
Q 029191 161 TIQLWKDGKKQAEVIGGHKSY 181 (197)
Q Consensus 161 t~~~~~~G~~v~~~~G~~~~~ 181 (197)
+++||++|+.+....|.++.+
T Consensus 85 aLvf~R~g~~lG~i~gi~dW~ 105 (107)
T PF07449_consen 85 ALVFFRDGRYLGAIEGIRDWA 105 (107)
T ss_dssp EEEEEETTEEEEEEESSSTHH
T ss_pred eEEEEECCEEEEEecCeeccc
Confidence 999999999999999998874
No 156
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.37 E-value=1.1e-05 Score=67.60 Aligned_cols=106 Identities=18% Similarity=0.265 Sum_probs=74.8
Q ss_pred cCeeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHH-----hhHHHHHHHHHh--CCCeEEEEEECCCChHHHHHH
Q 029191 81 IPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIY-----LKPKLEKLAADY--HPRLRFYNVDVNAVPHKLVAR 153 (197)
Q Consensus 81 ~~v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~-----~~p~l~~la~~~--~~~v~~~~vd~~~~~~~l~~~ 153 (197)
-.+..++ ..||.+++ ++...++|+||.|--..--. +....-+|+.+. ..++.|+.||..++. .++++
T Consensus 34 DRVi~Ln-eKNfk~~l----Kkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~-klAKK 107 (383)
T PF01216_consen 34 DRVIDLN-EKNFKRAL----KKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDA-KLAKK 107 (383)
T ss_dssp --CEEE--TTTHHHHH----HH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTH-HHHHH
T ss_pred cceEEcc-hhHHHHHH----HhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHH-HHHHh
Confidence 3455555 59999999 66889999999886322222 123234555554 467999999999998 79999
Q ss_pred cCCCCCCEEEEEcCCeEEEEEeCCCChHHHHHHHHHHhhc
Q 029191 154 AGVMKMPTIQLWKDGKKQAEVIGGHKSYLVINEVREMIGN 193 (197)
Q Consensus 154 ~~i~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~~~l~~ 193 (197)
+|+...+++.+|++|+.+ .|.|.++++.|.++|-.+++.
T Consensus 108 Lgv~E~~SiyVfkd~~~I-EydG~~saDtLVeFl~dl~ed 146 (383)
T PF01216_consen 108 LGVEEEGSIYVFKDGEVI-EYDGERSADTLVEFLLDLLED 146 (383)
T ss_dssp HT--STTEEEEEETTEEE-EE-S--SHHHHHHHHHHHHSS
T ss_pred cCccccCcEEEEECCcEE-EecCccCHHHHHHHHHHhccc
Confidence 999999999999999887 889999999999999888864
No 157
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.36 E-value=4.5e-06 Score=75.31 Aligned_cols=78 Identities=21% Similarity=0.313 Sum_probs=65.8
Q ss_pred CCeEEEE-EecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEEEEEeCCCChH
Q 029191 103 DESVIIV-WMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSY 181 (197)
Q Consensus 103 ~~~vvV~-F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~~ 181 (197)
++++-|. |.++||++|......+.+++.+. +++..-.+|++..+ +++++|+|.++|++++ ||+.+ +.|..+.+
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~-~~i~~~~i~~~~~~-~~~~~~~v~~vP~~~i--~~~~~--~~G~~~~~ 548 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLN-PNVEAEMIDVSHFP-DLKDEYGIMSVPAIVV--DDQQV--YFGKKTIE 548 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhC-CCceEEEEECcccH-HHHHhCCceecCEEEE--CCEEE--EeeCCCHH
Confidence 5676555 57999999999999999999997 79999999999998 8999999999999999 77754 45877875
Q ss_pred HHHHH
Q 029191 182 LVINE 186 (197)
Q Consensus 182 ~l~~~ 186 (197)
++.++
T Consensus 549 ~~~~~ 553 (555)
T TIGR03143 549 EMLEL 553 (555)
T ss_pred HHHHh
Confidence 55444
No 158
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.36 E-value=7.6e-06 Score=60.62 Aligned_cols=41 Identities=27% Similarity=0.449 Sum_probs=33.2
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEE
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd 142 (197)
...+.+|+.|+.++||+|+.+.|.+.++..++ +++.+...+
T Consensus 3 ~~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~-~~~~~~~~~ 43 (154)
T cd03023 3 PNGDVTIVEFFDYNCGYCKKLAPELEKLLKED-PDVRVVFKE 43 (154)
T ss_pred CCCCEEEEEEECCCChhHHHhhHHHHHHHHHC-CCceEEEEe
Confidence 34778899999999999999999999988777 555555444
No 159
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.33 E-value=2.6e-06 Score=56.88 Aligned_cols=59 Identities=22% Similarity=0.339 Sum_probs=44.5
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh----HHHHHHcCCCCCCEEEEEcCCeEE
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP----HKLVARAGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~----~~l~~~~~i~~~Pt~~~~~~G~~v 171 (197)
++.|+++|||+|+.+.+.+.++... ..++.++.+.+. ..+.+..++.++|+++ .+|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~--~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK----PAVVELDQHEDGSEIQDYLQELTGQRTVPNVF--IGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC----cEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEEE
Confidence 5789999999999999999886553 467777777652 1345566899999974 477664
No 160
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.33 E-value=1.4e-06 Score=68.10 Aligned_cols=114 Identities=16% Similarity=0.277 Sum_probs=90.8
Q ss_pred CCCccCeeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCC
Q 029191 77 APVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGV 156 (197)
Q Consensus 77 ~~~~~~v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i 156 (197)
+|....|.++++.++|-+.+... .+...++|..|-+.-.-|..+...+.=||.+| +.++|+++..+.-. ...+|..
T Consensus 134 gp~~~~V~El~~gkqfld~idke-~ks~~i~VhIYEdgi~gcealn~~~~cLAAey-P~vKFckikss~~g--as~~F~~ 209 (273)
T KOG3171|consen 134 GPRYGFVYELETGKQFLDTIDKE-LKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY-PIVKFCKIKSSNTG--ASDRFSL 209 (273)
T ss_pred CCccceEEEeccchhHHHHHhcc-cceEEEEEEEecCCCchHHHHhhhHHHhhccC-CceeEEEeeecccc--chhhhcc
Confidence 56677899999999999999653 25678999999999999999999999999999 99999999987764 6889999
Q ss_pred CCCCEEEEEcCCeEEEEEeC---CCChHHHHHHHHHHhhcc
Q 029191 157 MKMPTIQLWKDGKKQAEVIG---GHKSYLVINEVREMIGNE 194 (197)
Q Consensus 157 ~~~Pt~~~~~~G~~v~~~~G---~~~~~~l~~~i~~~l~~~ 194 (197)
.++||+++|++|+.+..++. ....+.+-..+..||+.+
T Consensus 210 n~lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 210 NVLPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred cCCceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 99999999999988644332 111222334566666654
No 161
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.25 E-value=1.1e-05 Score=72.17 Aligned_cols=81 Identities=17% Similarity=0.275 Sum_probs=68.1
Q ss_pred CCeE-EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEEEEEeCCCChH
Q 029191 103 DESV-IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSY 181 (197)
Q Consensus 103 ~~~v-vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~~ 181 (197)
++++ +..|++++|++|......+.+++... +++..-.+|....+ +++.+|+|.++|++++ +|+.+ +.|..+.+
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~-~~i~~~~id~~~~~-~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~ 188 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLN-PNITHTMIDGALFQ-DEVEARNIMAVPTVFL--NGEEF--GQGRMTLE 188 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC-CCceEEEEEchhCH-hHHHhcCCcccCEEEE--CCcEE--EecCCCHH
Confidence 4454 88899999999999999999999976 89999999999998 8999999999999976 66643 56888886
Q ss_pred HHHHHHHH
Q 029191 182 LVINEVRE 189 (197)
Q Consensus 182 ~l~~~i~~ 189 (197)
++.+.+.+
T Consensus 189 ~~~~~~~~ 196 (517)
T PRK15317 189 EILAKLDT 196 (517)
T ss_pred HHHHHHhc
Confidence 66666543
No 162
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.24 E-value=1.6e-05 Score=63.37 Aligned_cols=88 Identities=13% Similarity=0.223 Sum_probs=64.0
Q ss_pred CCe-EEEEEecCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCCh--------------------------HHHHHHc
Q 029191 103 DES-VIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP--------------------------HKLVARA 154 (197)
Q Consensus 103 ~~~-vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~--------------------------~~l~~~~ 154 (197)
++. ||+.|++.||+.|....+.+.++.++|. .++.++.|.+|... ..+++.|
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~y 107 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQL 107 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHc
Confidence 555 4678999999999999999999999983 46778888776421 1578889
Q ss_pred CCC-------CCCEEEEEc-CCeEEEEEeC----CCChHHHHHHHHHH
Q 029191 155 GVM-------KMPTIQLWK-DGKKQAEVIG----GHKSYLVINEVREM 190 (197)
Q Consensus 155 ~i~-------~~Pt~~~~~-~G~~v~~~~G----~~~~~~l~~~i~~~ 190 (197)
|+. .+|+++++. +|+....+.. .+..+++.+.|.++
T Consensus 108 g~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 108 GMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred CCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 873 689999995 7876544432 24555666666543
No 163
>PRK13189 peroxiredoxin; Provisional
Probab=98.22 E-value=1.4e-05 Score=63.92 Aligned_cols=89 Identities=10% Similarity=0.186 Sum_probs=62.5
Q ss_pred CCCeE-EEEEecCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCCh--------------------------HHHHHH
Q 029191 102 LDESV-IIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP--------------------------HKLVAR 153 (197)
Q Consensus 102 ~~~~v-vV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~--------------------------~~l~~~ 153 (197)
.++.+ |+.|++.||+.|....+.+.++++++. .++.++.|.+|... ..+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 36644 557789999999999999999999983 45777777665321 157889
Q ss_pred cCCC-------CCCEEEEEc-CCeEEEEEe----CCCChHHHHHHHHHH
Q 029191 154 AGVM-------KMPTIQLWK-DGKKQAEVI----GGHKSYLVINEVREM 190 (197)
Q Consensus 154 ~~i~-------~~Pt~~~~~-~G~~v~~~~----G~~~~~~l~~~i~~~ 190 (197)
||+. .+|+.+++. +|+...... ..+..+++...|.++
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 9975 478888885 787655544 234555555555543
No 164
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.20 E-value=2.6e-05 Score=63.82 Aligned_cols=89 Identities=11% Similarity=0.168 Sum_probs=65.0
Q ss_pred CCCeEEEEEe-cCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCC-----------------h----------HHHHH
Q 029191 102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV-----------------P----------HKLVA 152 (197)
Q Consensus 102 ~~~~vvV~F~-a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~-----------------~----------~~l~~ 152 (197)
.++++|+.|| +.||+.|....+.+.++.+++. .++.++-|.+|.. . ..+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 4677888888 8999999999999999999984 4577777776642 0 16889
Q ss_pred HcCCC-----CCCEEEEEc-CCeEEEEEe----CCCChHHHHHHHHHH
Q 029191 153 RAGVM-----KMPTIQLWK-DGKKQAEVI----GGHKSYLVINEVREM 190 (197)
Q Consensus 153 ~~~i~-----~~Pt~~~~~-~G~~v~~~~----G~~~~~~l~~~i~~~ 190 (197)
.||+. ..|+.++++ +|+...... ..++.+++.+.|..+
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 99985 589999996 787765442 234566666555544
No 165
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.18 E-value=5.7e-05 Score=57.78 Aligned_cols=100 Identities=16% Similarity=0.367 Sum_probs=77.7
Q ss_pred eeecCChhHHHHHHHHHhcCCCe-EEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCC--CC
Q 029191 83 LTPIGSESQFDRVIAEAQQLDES-VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM--KM 159 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a~~~~~~-vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~--~~ 159 (197)
+.+++ .+++..+. ..+.+ +++.|+..-......+...+.++++++.+++.|+.+|++..+ .++..+++. .+
T Consensus 79 v~~~t-~~n~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~-~~~~~~~i~~~~~ 152 (184)
T PF13848_consen 79 VPELT-PENFEKLF----SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFP-RLLKYFGIDEDDL 152 (184)
T ss_dssp CEEES-TTHHHHHH----STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTH-HHHHHTTTTTSSS
T ss_pred ccccc-hhhHHHHh----cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhH-HHHHHcCCCCccC
Confidence 44444 57888888 67766 888887778888999999999999999888999999999887 689999998 89
Q ss_pred CEEEEEc--CCeEEEEEeCCCChHHHHHHHHHHhh
Q 029191 160 PTIQLWK--DGKKQAEVIGGHKSYLVINEVREMIG 192 (197)
Q Consensus 160 Pt~~~~~--~G~~v~~~~G~~~~~~l~~~i~~~l~ 192 (197)
|+++++. +++......|..+. +.|.+|++
T Consensus 153 P~~vi~~~~~~~~~~~~~~~~~~----~~i~~Fl~ 183 (184)
T PF13848_consen 153 PALVIFDSNKGKYYYLPEGEITP----ESIEKFLN 183 (184)
T ss_dssp SEEEEEETTTSEEEE--SSCGCH----HHHHHHHH
T ss_pred CEEEEEECCCCcEEcCCCCCCCH----HHHHHHhc
Confidence 9999997 44432233676776 55555554
No 166
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.17 E-value=1.6e-05 Score=62.31 Aligned_cols=74 Identities=23% Similarity=0.245 Sum_probs=53.1
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEEC-------------------------------------
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV------------------------------------- 143 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~------------------------------------- 143 (197)
...+..++.|+.+.|++|+++.+.+.+ ..+++.+..+-.
T Consensus 75 ~~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~ 150 (197)
T cd03020 75 GNGKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPP 150 (197)
T ss_pred CCCCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCC
Confidence 346899999999999999999999876 113333333221
Q ss_pred --------CCChHHHHHHcCCCCCCEEEEEcCCeEEEEEeCCCChHHH
Q 029191 144 --------NAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYLV 183 (197)
Q Consensus 144 --------~~~~~~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~~~l 183 (197)
+++. .+++++||.++||++ |.+|+.+ .|..+.+.+
T Consensus 151 ~~~~~~~i~~~~-~l~~~~gi~gtPtii-~~~G~~~---~G~~~~~~l 193 (197)
T cd03020 151 AASCDNPVAANL-ALGRQLGVNGTPTIV-LADGRVV---PGAPPAAQL 193 (197)
T ss_pred ccccCchHHHHH-HHHHHcCCCcccEEE-ECCCeEe---cCCCCHHHH
Confidence 1111 688999999999997 7888775 788877433
No 167
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.17 E-value=3.1e-05 Score=52.12 Aligned_cols=72 Identities=17% Similarity=0.319 Sum_probs=51.5
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChH--HHHHHcCCCCCCEEEEEcCCeEEEEEeCCCChHHHH
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH--KLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYLVI 184 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~--~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~~~l~ 184 (197)
+..|..+||++|+..+..|++ .++.|-.+|+++++. +.....+...+|++++ ++.. ..|...
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~~---~~Gf~~----- 66 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDLS---WSGFRP----- 66 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCEE---EecCCH-----
Confidence 667889999999999999865 568888999998762 1223457789999966 5533 356555
Q ss_pred HHHHHHhhcc
Q 029191 185 NEVREMIGNE 194 (197)
Q Consensus 185 ~~i~~~l~~~ 194 (197)
+.|.+++..+
T Consensus 67 ~~l~~~~~~~ 76 (81)
T PRK10329 67 DMINRLHPAP 76 (81)
T ss_pred HHHHHHHHhh
Confidence 3666666543
No 168
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.16 E-value=2.4e-05 Score=50.17 Aligned_cols=57 Identities=26% Similarity=0.422 Sum_probs=43.8
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCCCCCEEEEEcCCeEE
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~~~~~G~~v 171 (197)
++.|+++||++|+.+...|.+.. +.+..+|++.++. ++.+..+...+|++++ +|+.+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~~i 61 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIFI--NGEFI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 57889999999999999998743 6778889987762 3444557788998754 77666
No 169
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.16 E-value=3.7e-05 Score=52.95 Aligned_cols=92 Identities=13% Similarity=0.181 Sum_probs=68.8
Q ss_pred eecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEE
Q 029191 84 TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQ 163 (197)
Q Consensus 84 ~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~ 163 (197)
..|.+.++++..+ ..++.++|-|+.++|+ .....+.++|+.+.+.+.|+.+. +. ++.+++++.. |+++
T Consensus 2 ~~i~s~~~l~~~~----~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~-~~~~~~~~~~-~~i~ 69 (97)
T cd02981 2 KELTSKEELEKFL----DKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DK-EVAKKLKVKP-GSVV 69 (97)
T ss_pred eecCCHHHHHHHh----ccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hH-HHHHHcCCCC-CceE
Confidence 4567778888877 7899999999999998 57788889999886678887654 33 5777887754 8999
Q ss_pred EEcCC-eEEEEEeCCCChHHHHHHH
Q 029191 164 LWKDG-KKQAEVIGGHKSYLVINEV 187 (197)
Q Consensus 164 ~~~~G-~~v~~~~G~~~~~~l~~~i 187 (197)
+|+.. .....|.|..+.+.|.++|
T Consensus 70 l~~~~~~~~~~y~g~~~~~~l~~fi 94 (97)
T cd02981 70 LFKPFEEEPVEYDGEFTEESLVEFI 94 (97)
T ss_pred EeCCcccCCccCCCCCCHHHHHHHH
Confidence 99764 4445688877764444444
No 170
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.15 E-value=1.9e-05 Score=63.65 Aligned_cols=80 Identities=18% Similarity=0.176 Sum_probs=57.6
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECC------------------------------------
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN------------------------------------ 144 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~------------------------------------ 144 (197)
..++.+++.|.-+.||+|+++++.+.++.+. ++.+..+..-
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~---~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~ 181 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNAL---GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSP 181 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhcC---CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCc
Confidence 3578889999999999999999999887542 2333332111
Q ss_pred --------CChHHHHHHcCCCCCCEEEEEcCCeEEEEEeCCCChHHHHHHHH
Q 029191 145 --------AVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYLVINEVR 188 (197)
Q Consensus 145 --------~~~~~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~ 188 (197)
++. ++++++||+++||++ +.+|+.+ .|..+.+.|.+.|.
T Consensus 182 ~~c~~~v~~~~-~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~ 228 (232)
T PRK10877 182 ASCDVDIADHY-ALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLD 228 (232)
T ss_pred ccccchHHHhH-HHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHH
Confidence 111 689999999999999 6888776 89888854444433
No 171
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.14 E-value=1.3e-05 Score=56.14 Aligned_cols=57 Identities=19% Similarity=0.291 Sum_probs=40.5
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChH------HHHHHcCCCCCCEEEEEcCCeEE
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH------KLVARAGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~------~l~~~~~i~~~Pt~~~~~~G~~v 171 (197)
++.|..+|||+|++.+..|.+. ++.+..+|++..+. .+.+..|...+|.+++ +|+.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~i 72 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKLV 72 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEEE
Confidence 7788999999999999988763 34455667765541 2333447789999854 78666
No 172
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.14 E-value=2.7e-05 Score=61.17 Aligned_cols=75 Identities=7% Similarity=0.137 Sum_probs=57.4
Q ss_pred CCCeEEEEEec-CCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCCh---------------------------HHHHH
Q 029191 102 LDESVIIVWMA-SWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP---------------------------HKLVA 152 (197)
Q Consensus 102 ~~~~vvV~F~a-~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~---------------------------~~l~~ 152 (197)
.++.++|.||+ .||+.|....+.+.++++++. .++.++.|.+|... .++++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 37899999995 889999998899999999984 46788888776321 25788
Q ss_pred HcCCC------CCCEEEEEc-CCeEEEEEeC
Q 029191 153 RAGVM------KMPTIQLWK-DGKKQAEVIG 176 (197)
Q Consensus 153 ~~~i~------~~Pt~~~~~-~G~~v~~~~G 176 (197)
.||+. .+|+.+++. +|+......+
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~ 145 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVN 145 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEec
Confidence 89986 368888885 7776655544
No 173
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.14 E-value=4.3e-05 Score=60.29 Aligned_cols=86 Identities=14% Similarity=0.262 Sum_probs=60.8
Q ss_pred eEEEEEecCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCCh--------------------------HHHHHHcCCC
Q 029191 105 SVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP--------------------------HKLVARAGVM 157 (197)
Q Consensus 105 ~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~--------------------------~~l~~~~~i~ 157 (197)
.+|+.||+.||+.|....+.+.++.+++. .++.++.|.+|... ..+++.||+.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 45568999999999999999999999984 46788888776421 2578889986
Q ss_pred ----C----CCEEEEE-cCCeEEEEEeC----CCChHHHHHHHHHH
Q 029191 158 ----K----MPTIQLW-KDGKKQAEVIG----GHKSYLVINEVREM 190 (197)
Q Consensus 158 ----~----~Pt~~~~-~~G~~v~~~~G----~~~~~~l~~~i~~~ 190 (197)
+ .|+.+++ ++|+......+ .+..+++.+.|.++
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 2 3457777 47777656555 34455565555544
No 174
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.13 E-value=2.6e-05 Score=62.10 Aligned_cols=88 Identities=9% Similarity=0.184 Sum_probs=62.7
Q ss_pred CCeEEE-EEecCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCCh--------------------------HHHHHHc
Q 029191 103 DESVII-VWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP--------------------------HKLVARA 154 (197)
Q Consensus 103 ~~~vvV-~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~--------------------------~~l~~~~ 154 (197)
+++++| .|+++||+.|....+.+.++++++. .++.++-|.+|... ..+++.|
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~y 112 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRL 112 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHc
Confidence 565554 7889999999999999999999983 56777777776332 1567788
Q ss_pred CCC-------CCCEEEEEc-CCeEEEEEeC----CCChHHHHHHHHHH
Q 029191 155 GVM-------KMPTIQLWK-DGKKQAEVIG----GHKSYLVINEVREM 190 (197)
Q Consensus 155 ~i~-------~~Pt~~~~~-~G~~v~~~~G----~~~~~~l~~~i~~~ 190 (197)
|+. ..|+.+++. +|+......+ .++.+++...|.++
T Consensus 113 gv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 113 GMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred CCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 873 378888885 7776554433 24566666666554
No 175
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.12 E-value=2.3e-05 Score=51.31 Aligned_cols=54 Identities=26% Similarity=0.543 Sum_probs=41.3
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHH---cCCCCCCEEEEEcCCe
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVAR---AGVMKMPTIQLWKDGK 169 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~---~~i~~~Pt~~~~~~G~ 169 (197)
+..|..++|+.|+..+..|++ .++.+-.+|+++++ +.... .|..++|++++ +|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~-~~~~~~~~~g~~~vP~v~~--~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQP-EAIDYVKAQGFRQVPVIVA--DGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCH-HHHHHHHHcCCcccCEEEE--CCC
Confidence 356889999999999999975 46778888998876 33333 48889999865 554
No 176
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.11 E-value=2.3e-05 Score=52.38 Aligned_cols=62 Identities=19% Similarity=0.343 Sum_probs=46.6
Q ss_pred CCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh--HHHHHHcCCCCCCEEEEEcCCeEE
Q 029191 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP--HKLVARAGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 102 ~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~--~~l~~~~~i~~~Pt~~~~~~G~~v 171 (197)
+.+.-|+.|+.+||++|++.+..|++ -++.+-.+|++.+. .++....+...+|.+++ +|+.+
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~------~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 68 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKE------KGYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLI 68 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHH------cCCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEE
Confidence 34555788999999999999999975 34666677887664 24555668899999965 77665
No 177
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.09 E-value=0.00014 Score=54.53 Aligned_cols=82 Identities=21% Similarity=0.319 Sum_probs=62.8
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHh--CCCeEEEEEECCCChH------------------------------
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADY--HPRLRFYNVDVNAVPH------------------------------ 148 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~--~~~v~~~~vd~~~~~~------------------------------ 148 (197)
...+++|+.|+..-|++|..+.+.+.++.+++ .+++.+...++-....
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQ 89 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 44678899999999999999999999999998 6789888887631100
Q ss_pred -------------------------------------HHHHHcCCCCCCEEEEEcCCeEEEEEeCCCChHHHHHHH
Q 029191 149 -------------------------------------KLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYLVINEV 187 (197)
Q Consensus 149 -------------------------------------~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~i 187 (197)
..+++++|.++||+++ ||+.+ .|..+.+++.+.|
T Consensus 90 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~~---~~~~~~~~l~~~I 160 (162)
T PF13462_consen 90 ENFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKYV---VGPYTIEELKELI 160 (162)
T ss_dssp HSTSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCEE---ETTTSHHHHHHHH
T ss_pred hccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEEe---CCCCCHHHHHHHH
Confidence 3567889999999999 99886 7888884444433
No 178
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.09 E-value=2.1e-05 Score=52.27 Aligned_cols=57 Identities=19% Similarity=0.465 Sum_probs=42.5
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCCCCCEEEEEcCCeEE
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~~~~~G~~v 171 (197)
++.|+.+||+.|...+..|++ .++.+-.+|++.++. ++.+..+..++|++++ +|+.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~------~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 60 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSS------KGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVHV 60 (79)
T ss_pred CEEEecCCChhHHHHHHHHHH------cCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 467889999999999999976 346667778877752 3444458889999855 77655
No 179
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.08 E-value=4.5e-05 Score=49.94 Aligned_cols=57 Identities=21% Similarity=0.473 Sum_probs=42.9
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCC-CCCEEEEEcCCeEE
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVM-KMPTIQLWKDGKKQ 171 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~---~l~~~~~i~-~~Pt~~~~~~G~~v 171 (197)
++.|+.+||+.|...+..|.+ .++.+..+|++.+++ ++.+..+.. ++|++++ +|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~------~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK------KGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH------CCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEEE
Confidence 567889999999999999976 356777888887652 334445776 8998865 77665
No 180
>PHA03050 glutaredoxin; Provisional
Probab=98.08 E-value=3.1e-05 Score=55.09 Aligned_cols=60 Identities=15% Similarity=0.207 Sum_probs=43.0
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCC---h---HHHHHHcCCCCCCEEEEEcCCeEE
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV---P---HKLVARAGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~---~---~~l~~~~~i~~~Pt~~~~~~G~~v 171 (197)
|+.|..+|||+|++.+..|.+..-+. + .+-.+|+++. . +++.+..|...+|++++ +|+.+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~-~--~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~i 80 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR-G--AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSI 80 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc-C--CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEE
Confidence 77899999999999999997754432 2 3445566542 1 24566678889999966 78766
No 181
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.07 E-value=0.00017 Score=52.97 Aligned_cols=106 Identities=17% Similarity=0.221 Sum_probs=77.6
Q ss_pred CeeecCChhHHHHHHHHHhcCCCeEEEEEecCC---CHh-H-HHhhHHHHHHHHHhCCC-eEEEEEECCCChHHHHHHcC
Q 029191 82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASW---CRK-C-IYLKPKLEKLAADYHPR-LRFYNVDVNAVPHKLVARAG 155 (197)
Q Consensus 82 ~v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~w---C~~-C-~~~~p~l~~la~~~~~~-v~~~~vd~~~~~~~l~~~~~ 155 (197)
.+.++++.+.++..- ..++.-+|-| -|. |.. + ..+...+.++|++|.++ +.|+.+|.++.. .+.+.||
T Consensus 3 ~~~~l~~~~~~~~~C----~~~~~C~i~~-l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~-~~~~~fg 76 (130)
T cd02983 3 EIIELTSEDVFEETC----EEKQLCIIAF-LPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQL-DLEEALN 76 (130)
T ss_pred ceEEecCHHHHHhhc----cCCCeEEEEE-cCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccH-HHHHHcC
Confidence 577888877777666 3445555555 443 222 3 45788999999999888 999999999998 5999999
Q ss_pred CCC--CCEEEEEcCCe-EEEEEeCCCChHHHHHHHHHHhhc
Q 029191 156 VMK--MPTIQLWKDGK-KQAEVIGGHKSYLVINEVREMIGN 193 (197)
Q Consensus 156 i~~--~Pt~~~~~~G~-~v~~~~G~~~~~~l~~~i~~~l~~ 193 (197)
|.+ +|+++++...+ +...+.|..+.+.+.+++..+++-
T Consensus 77 l~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~G 117 (130)
T cd02983 77 IGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYG 117 (130)
T ss_pred CCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcC
Confidence 964 99999996433 322266888887777777777654
No 182
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.03 E-value=5.5e-05 Score=57.65 Aligned_cols=41 Identities=20% Similarity=0.404 Sum_probs=34.0
Q ss_pred CCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEE
Q 029191 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142 (197)
Q Consensus 102 ~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd 142 (197)
..++.|+.|+.+.||+|+.+.+.+.++.+++.+++.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcC
Confidence 57889999999999999999999999998875555554443
No 183
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.01 E-value=5.9e-05 Score=49.41 Aligned_cols=57 Identities=19% Similarity=0.447 Sum_probs=44.9
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCCCCCEEEEEcCCeEE
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~~~~~G~~v 171 (197)
++.|+.+||+.|++....|++ .++.+-.+|++.++. ++.+..+-..+|++++ +|+.+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~------~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~i 62 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE------KGLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLV 62 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 678889999999999999986 456777889987762 4555667788999966 77665
No 184
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.01 E-value=7e-05 Score=67.02 Aligned_cols=82 Identities=16% Similarity=0.276 Sum_probs=68.8
Q ss_pred CCe-EEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEEEEEeCCCChH
Q 029191 103 DES-VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSY 181 (197)
Q Consensus 103 ~~~-vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~~ 181 (197)
+++ -+-.|+++.|++|......+.+++... ++|..-.+|....+ ++..+|+|.++|++++ +|+.+ +.|..+.+
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-p~i~~~~id~~~~~-~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~ 189 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLN-PNISHTMIDGALFQ-DEVEALGIQGVPAVFL--NGEEF--HNGRMDLA 189 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-CCceEEEEEchhCH-HHHHhcCCcccCEEEE--CCcEE--EecCCCHH
Confidence 444 488899999999999999999999987 89999999999998 8999999999999987 66643 56888887
Q ss_pred HHHHHHHHH
Q 029191 182 LVINEVREM 190 (197)
Q Consensus 182 ~l~~~i~~~ 190 (197)
++.+.+.+.
T Consensus 190 ~~~~~l~~~ 198 (515)
T TIGR03140 190 ELLEKLEET 198 (515)
T ss_pred HHHHHHhhc
Confidence 666666544
No 185
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.97 E-value=0.00013 Score=50.76 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=43.4
Q ss_pred CCeEEEEEe----cCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCCCCCEEEEEcCCeEE
Q 029191 103 DESVIIVWM----ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 103 ~~~vvV~F~----a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~~~~~G~~v 171 (197)
+.+|+|+-. +||||+|++.+..|.+. ++.+..+|+++++. ++.+..|...+|.+++ +|+.+
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g~~i 78 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KGEFV 78 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--CCEEE
Confidence 345555543 39999999999999773 45677888877662 3445567789999865 77665
No 186
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.96 E-value=8.5e-05 Score=58.73 Aligned_cols=41 Identities=10% Similarity=0.347 Sum_probs=33.0
Q ss_pred CCeEEEEEecCCCHhHHHhhHHH---HHHHHHhCCCeEEEEEEC
Q 029191 103 DESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDV 143 (197)
Q Consensus 103 ~~~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~ 143 (197)
+++.||+|+.-.|+||..+.+.+ +.+.+.+.+++.+.++.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 56779999999999999999976 778888866666665543
No 187
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.90 E-value=5.4e-05 Score=58.83 Aligned_cols=90 Identities=18% Similarity=0.356 Sum_probs=74.0
Q ss_pred ccCeeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCC
Q 029191 80 SIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKM 159 (197)
Q Consensus 80 ~~~v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~ 159 (197)
-+.|.+|+ ..+|..-+.+| +.+-.|||..|...-+.|.-+.-.+.+++..| +.++|+++-.+..- ..|-=.-.
T Consensus 90 fG~V~~IS-g~dyv~EVT~A-s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kf-p~iKFVki~at~cI----pNYPe~nl 162 (240)
T KOG3170|consen 90 FGEVFPIS-GPDYVKEVTKA-SEGVWVVVHLYKQGVPLCALLSHHLQSLACKF-PQIKFVKIPATTCI----PNYPESNL 162 (240)
T ss_pred ccceeecc-chHHHHHHHhc-cCccEEEEEeeccccHHHHHHHHHHHHHhhcC-CcceEEeccccccc----CCCcccCC
Confidence 44677777 47788777777 67899999999999999999999999999999 99999999887653 25666779
Q ss_pred CEEEEEcCCeEEEEEeC
Q 029191 160 PTIQLWKDGKKQAEVIG 176 (197)
Q Consensus 160 Pt~~~~~~G~~v~~~~G 176 (197)
||+++|..|.....+.|
T Consensus 163 PTl~VY~~G~lk~q~ig 179 (240)
T KOG3170|consen 163 PTLLVYHHGALKKQMIG 179 (240)
T ss_pred CeEEEeecchHHhheeh
Confidence 99999998876544443
No 188
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.88 E-value=0.00021 Score=58.23 Aligned_cols=83 Identities=14% Similarity=0.240 Sum_probs=57.2
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECC----------------C-------------------
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN----------------A------------------- 145 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~----------------~------------------- 145 (197)
...+.+|+.|.-+.||+|+++.+.+.++.+. ++|.+..+..- .
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~ 192 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLK 192 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCC
Confidence 3467789999999999999999998876654 34444444310 0
Q ss_pred C----h----------HHHHHHcCCCCCCEEEEEcCCeEEEEEeCCCChHHHHH
Q 029191 146 V----P----------HKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYLVIN 185 (197)
Q Consensus 146 ~----~----------~~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~ 185 (197)
. . ..+.+++||+++||+++-.+...+....|..+.++|.+
T Consensus 193 ~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~ 246 (251)
T PRK11657 193 PPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAE 246 (251)
T ss_pred ccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHH
Confidence 0 0 04778899999999999863224446689988844433
No 189
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00019 Score=48.19 Aligned_cols=63 Identities=22% Similarity=0.425 Sum_probs=46.0
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh----HHHHHHc-CCCCCCEEEEEcCCeEEEEEeCCCCh
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP----HKLVARA-GVMKMPTIQLWKDGKKQAEVIGGHKS 180 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~----~~l~~~~-~i~~~Pt~~~~~~G~~v~~~~G~~~~ 180 (197)
++.|..+|||+|++.+..|.+ .++.+..+|++..+ .+..++. |...+|.+++ +|+.+ .|....
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~i---gg~~d~ 70 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKHV---GGCDDL 70 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEEE---eCcccH
Confidence 677889999999999999984 55677777777665 2344444 7899999988 77644 444555
No 190
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.86 E-value=0.00015 Score=49.70 Aligned_cols=61 Identities=15% Similarity=0.230 Sum_probs=43.3
Q ss_pred CCeEEEEEec----CCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCCCCCEEEEEcCCeEE
Q 029191 103 DESVIIVWMA----SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 103 ~~~vvV~F~a----~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~~~~~G~~v 171 (197)
+.+|+|.-.+ |||++|+..+..|.+. ++.+..+|++.++. ++.+..|-..+|++++ +|+.+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~~i 74 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGELV 74 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCEEE
Confidence 4555555443 7999999999999773 36677788877652 3445568889999844 77654
No 191
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.84 E-value=0.00017 Score=46.98 Aligned_cols=57 Identities=19% Similarity=0.380 Sum_probs=42.6
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChH--HHHHHcCCCCCCEEEEEcCCeEE
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH--KLVARAGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~--~l~~~~~i~~~Pt~~~~~~G~~v 171 (197)
++.|..+||+.|.+.+..|.+ .++.+-.+|++.+.. .+....+...+|.+++ +|+.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~------~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi--~g~~i 61 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE------NGISYEEIPLGKDITGRSLRAVTGAMTVPQVFI--DGELI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH------cCCCcEEEECCCChhHHHHHHHhCCCCcCeEEE--CCEEE
Confidence 678899999999999988875 356677778876652 2444458899999854 77665
No 192
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.75 E-value=0.00051 Score=62.11 Aligned_cols=101 Identities=15% Similarity=0.177 Sum_probs=79.3
Q ss_pred hHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEc-CC
Q 029191 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWK-DG 168 (197)
Q Consensus 90 ~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~-~G 168 (197)
++++..+.+ -.+...++.|+.+.|..|..+...++++++.. +++.+...|...+. +++++|+|...|++.+++ +|
T Consensus 355 ~~l~~~~~~--l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s-~~i~~~~~~~~~~~-~~~~~~~v~~~P~~~i~~~~~ 430 (555)
T TIGR03143 355 QQLVGIFGR--LENPVTLLLFLDGSNEKSAELQSFLGEFASLS-EKLNSEAVNRGEEP-ESETLPKITKLPTVALLDDDG 430 (555)
T ss_pred HHHHHHHHh--cCCCEEEEEEECCCchhhHHHHHHHHHHHhcC-CcEEEEEeccccch-hhHhhcCCCcCCEEEEEeCCC
Confidence 345555542 33444677888889999999999999999665 88999888988877 789999999999999995 66
Q ss_pred eEE-EEEeCCCChHHHHHHHHHHhhcc
Q 029191 169 KKQ-AEVIGGHKSYLVINEVREMIGNE 194 (197)
Q Consensus 169 ~~v-~~~~G~~~~~~l~~~i~~~l~~~ 194 (197)
+.. .+|.|.....++...|..+++-.
T Consensus 431 ~~~~i~f~g~P~G~Ef~s~i~~i~~~~ 457 (555)
T TIGR03143 431 NYTGLKFHGVPSGHELNSFILALYNAA 457 (555)
T ss_pred cccceEEEecCccHhHHHHHHHHHHhc
Confidence 543 69999999988777777776543
No 193
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.74 E-value=0.00017 Score=48.73 Aligned_cols=60 Identities=23% Similarity=0.347 Sum_probs=46.0
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh-------------------------------HHHHHHcC
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP-------------------------------HKLVARAG 155 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-------------------------------~~l~~~~~ 155 (197)
++.|+.+.|++|..+.+.+.++.....+++.+....+.-.. .....++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 46899999999999999999998666667776666542211 13567889
Q ss_pred CCCCCEEEEEc
Q 029191 156 VMKMPTIQLWK 166 (197)
Q Consensus 156 i~~~Pt~~~~~ 166 (197)
+.++||+++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999999944
No 194
>PRK10638 glutaredoxin 3; Provisional
Probab=97.72 E-value=0.00032 Score=47.15 Aligned_cols=57 Identities=18% Similarity=0.414 Sum_probs=43.0
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCCCCCEEEEEcCCeEE
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~~~~~G~~v 171 (197)
++.|..+||++|++....|++ .++.+..+|++.++. ++.+..+...+|++++ +|+.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~------~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~i 63 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS------KGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHI 63 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH------cCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 567788999999999999986 346677788877652 3455568888998855 77665
No 195
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.68 E-value=0.00053 Score=48.90 Aligned_cols=97 Identities=10% Similarity=-0.007 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHH---hCCCeEEEEEECCCChHHHHHHcCCCC--CCEEE
Q 029191 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAAD---YHPRLRFYNVDVNAVPHKLVARAGVMK--MPTIQ 163 (197)
Q Consensus 89 ~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~---~~~~v~~~~vd~~~~~~~l~~~~~i~~--~Pt~~ 163 (197)
.++++.+. .++.+..+.|+ .-..-..+.+.+.++|++ +.+++.|+.+|.+... ...+.||+.. +|.+.
T Consensus 6 ~e~~~~~~----~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~-~~~~~fgl~~~~~P~i~ 78 (111)
T cd03072 6 FENAEELT----EEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFR-HPLLHLGKTPADLPVIA 78 (111)
T ss_pred cccHHHHh----cCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhh-hHHHHcCCCHhHCCEEE
Confidence 46677777 67777777777 222347789999999999 8889999999999987 4889999997 99999
Q ss_pred EEcCCe-EEEE-EeCCCChHHHHHHHHHHhh
Q 029191 164 LWKDGK-KQAE-VIGGHKSYLVINEVREMIG 192 (197)
Q Consensus 164 ~~~~G~-~v~~-~~G~~~~~~l~~~i~~~l~ 192 (197)
+..... .... +.+..+.+.+.+++..+++
T Consensus 79 i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 79 IDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 986432 1112 4466677666666665554
No 196
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.62 E-value=0.00082 Score=45.06 Aligned_cols=77 Identities=21% Similarity=0.305 Sum_probs=55.6
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCC--eEEEEEeCCCChHHHH
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDG--KKQAEVIGGHKSYLVI 184 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G--~~v~~~~G~~~~~~l~ 184 (197)
++.|..+.|+-|......+.++... ..+.+-.||+++++ ++..+|+. .+|.+.+-..+ .......+..+.+.+.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~--~~~~l~~vDI~~d~-~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~ 77 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE--FPFELEEVDIDEDP-ELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLR 77 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT--STCEEEEEETTTTH-HHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh--cCceEEEEECCCCH-HHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHH
Confidence 6789999999999999999987665 34899999999988 79999995 79987763211 1122346777775554
Q ss_pred HHH
Q 029191 185 NEV 187 (197)
Q Consensus 185 ~~i 187 (197)
++|
T Consensus 78 ~~L 80 (81)
T PF05768_consen 78 AWL 80 (81)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
No 197
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.60 E-value=0.0018 Score=46.69 Aligned_cols=98 Identities=17% Similarity=0.254 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHH-HHh--CCCeEEEEEECCCCh----HHHHHHcCC--CCC
Q 029191 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLA-ADY--HPRLRFYNVDVNAVP----HKLVARAGV--MKM 159 (197)
Q Consensus 89 ~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la-~~~--~~~v~~~~vd~~~~~----~~l~~~~~i--~~~ 159 (197)
.-+|+.++ .+.+.++|.|=... |-=.-+..+.+++ +.. .+++.++.|-+.+.. .+++++|+| ..+
T Consensus 11 ~~tFdKvi----~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~f 84 (126)
T PF07912_consen 11 ELTFDKVI----PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDF 84 (126)
T ss_dssp TTHHHHHG----GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-
T ss_pred ceehhhee----ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccC
Confidence 46899999 88999999996443 4445566777888 433 378999999885322 389999999 569
Q ss_pred CEEEEEcCC-eEEEEE--eCCCChHHHHHHHHHHhhccCC
Q 029191 160 PTIQLWKDG-KKQAEV--IGGHKSYLVINEVREMIGNENN 196 (197)
Q Consensus 160 Pt~~~~~~G-~~v~~~--~G~~~~~~l~~~i~~~l~~~~~ 196 (197)
|.+++|..| ....++ .|.-+. +.|++++..+..
T Consensus 85 Pv~~LF~~~~~~pv~~p~~~~~t~----~~l~~fvk~~t~ 120 (126)
T PF07912_consen 85 PVIYLFVGDKEEPVRYPFDGDVTA----DNLQRFVKSNTG 120 (126)
T ss_dssp SEEEEEESSTTSEEEE-TCS-S-H----HHHHHHHHHTSS
T ss_pred CEEEEecCCCCCCccCCccCCccH----HHHHHHHHhCCC
Confidence 999999843 456677 677777 677787777654
No 198
>PTZ00062 glutaredoxin; Provisional
Probab=97.55 E-value=0.00095 Score=52.75 Aligned_cols=52 Identities=13% Similarity=0.259 Sum_probs=38.5
Q ss_pred cCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCCCCCEEEEEcCCeEE
Q 029191 112 ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 112 a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~~~~~G~~v 171 (197)
+|||+.|+++...|.+ .++.+..+|+++++. .+.+..+...+|.+++ +|+.+
T Consensus 125 ~p~C~~C~~~k~~L~~------~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~~I 179 (204)
T PTZ00062 125 FPFCRFSNAVVNMLNS------SGVKYETYNIFEDPDLREELKVYSNWPTYPQLYV--NGELI 179 (204)
T ss_pred CCCChhHHHHHHHHHH------cCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 4799999999999876 356677888887762 2334447778898887 78766
No 199
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.54 E-value=0.00083 Score=47.94 Aligned_cols=75 Identities=15% Similarity=0.222 Sum_probs=54.1
Q ss_pred CCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCChHHHHHHcCCCC----CCEEEEEcCCeEEEEEeCCC-ChHHHHHHH
Q 029191 114 WCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVPHKLVARAGVMK----MPTIQLWKDGKKQAEVIGGH-KSYLVINEV 187 (197)
Q Consensus 114 wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~~~l~~~~~i~~----~Pt~~~~~~G~~v~~~~G~~-~~~~l~~~i 187 (197)
.-..-..+...+.++|++++ +++.|+.+|.++.. .+.+.||+.. +|++.++..........+.. +. +.|
T Consensus 29 ~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~-~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~----e~i 103 (111)
T cd03073 29 NPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFS-HELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDV----DAL 103 (111)
T ss_pred ChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHH-HHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCH----HHH
Confidence 33455778999999999998 69999999999887 4888999985 99999986322211234444 55 455
Q ss_pred HHHhhc
Q 029191 188 REMIGN 193 (197)
Q Consensus 188 ~~~l~~ 193 (197)
+++++.
T Consensus 104 ~~F~~~ 109 (111)
T cd03073 104 EEFLED 109 (111)
T ss_pred HHHHHH
Confidence 555544
No 200
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0011 Score=60.29 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHH---HHHHHHhCCCeEEEEEECCCChH------HHHHHcC-CCC
Q 029191 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVPH------KLVARAG-VMK 158 (197)
Q Consensus 89 ~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~~------~l~~~~~-i~~ 158 (197)
.+.|..+- ..+|||+|-...+||..|+.|...= .++|+-++..++-+|||-++-|. .+++... --|
T Consensus 33 ~eAf~~A~----~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GG 108 (667)
T COG1331 33 EEAFAKAK----EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGG 108 (667)
T ss_pred HHHHHHHH----HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCC
Confidence 46677766 7899999999999999999987643 56677666678999999998882 2344443 446
Q ss_pred CCEEEEE-cCCeEE
Q 029191 159 MPTIQLW-KDGKKQ 171 (197)
Q Consensus 159 ~Pt~~~~-~~G~~v 171 (197)
.|-.+|. ++|++.
T Consensus 109 WPLtVfLTPd~kPF 122 (667)
T COG1331 109 WPLTVFLTPDGKPF 122 (667)
T ss_pred CceeEEECCCCcee
Confidence 9955555 788875
No 201
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0016 Score=53.92 Aligned_cols=81 Identities=17% Similarity=0.454 Sum_probs=66.8
Q ss_pred eeecCChhHHHHHHHHHhcCCCeEEEEEecC----CCHhHHHhhHHHHHHHHHhC------C--CeEEEEEECCCChHHH
Q 029191 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMAS----WCRKCIYLKPKLEKLAADYH------P--RLRFYNVDVNAVPHKL 150 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~----wC~~C~~~~p~l~~la~~~~------~--~v~~~~vd~~~~~~~l 150 (197)
+..++ ++.|...+.. .-.+-.++|.|.|- .|.-|+....++.-+++.+. + ++-|..||.++.+ ++
T Consensus 42 VI~~n-~d~~~~~v~~-~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p-~~ 118 (331)
T KOG2603|consen 42 VIRMN-DDKFSKFVRP-PPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP-QV 118 (331)
T ss_pred eEEec-CcchhhhccC-CCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH-HH
Confidence 55555 4889988862 24566789999975 59999999999999998761 2 6789999999998 79
Q ss_pred HHHcCCCCCCEEEEEc
Q 029191 151 VARAGVMKMPTIQLWK 166 (197)
Q Consensus 151 ~~~~~i~~~Pt~~~~~ 166 (197)
.+.+++..+|++++|.
T Consensus 119 Fq~l~ln~~P~l~~f~ 134 (331)
T KOG2603|consen 119 FQQLNLNNVPHLVLFS 134 (331)
T ss_pred HHHhcccCCCeEEEeC
Confidence 9999999999999994
No 202
>PRK10824 glutaredoxin-4; Provisional
Probab=97.35 E-value=0.0014 Score=47.09 Aligned_cols=68 Identities=21% Similarity=0.293 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCCeEEEEEec----CCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCCCCCEEE
Q 029191 91 QFDRVIAEAQQLDESVIIVWMA----SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMKMPTIQ 163 (197)
Q Consensus 91 ~f~~~~~~a~~~~~~vvV~F~a----~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~ 163 (197)
..++.+ + +.+|+|.--. ||||.|++....|.++. +.+..+|++.++. .+.+.-|...+|.++
T Consensus 7 ~v~~~I----~-~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIF 75 (115)
T PRK10824 7 KIQRQI----A-ENPILLYMKGSPKLPSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQLW 75 (115)
T ss_pred HHHHHH----h-cCCEEEEECCCCCCCCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeEE
Confidence 345555 3 3445554443 69999999999997753 4445567776651 334445778899988
Q ss_pred EEcCCeEE
Q 029191 164 LWKDGKKQ 171 (197)
Q Consensus 164 ~~~~G~~v 171 (197)
+ +|+-+
T Consensus 76 I--~G~~I 81 (115)
T PRK10824 76 V--DGELV 81 (115)
T ss_pred E--CCEEE
Confidence 8 88776
No 203
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.20 E-value=0.0016 Score=56.73 Aligned_cols=57 Identities=12% Similarity=0.258 Sum_probs=43.1
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChH--HHHHH---------cCCCCCCEEEEEcCCeEE
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH--KLVAR---------AGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~--~l~~~---------~~i~~~Pt~~~~~~G~~v 171 (197)
|+.|..+|||+|++.+..|.+ .++.+-.+|+++.+. ++.++ .|..++|++++ +|+.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~------~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i 71 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA------NDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI 71 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH------CCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence 778999999999999999877 457888899987652 12222 36788999977 67655
No 204
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0037 Score=44.04 Aligned_cols=59 Identities=17% Similarity=0.291 Sum_probs=43.3
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHH----HcCCCCCCEEEEEcCCeEE
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVA----RAGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~----~~~i~~~Pt~~~~~~G~~v 171 (197)
+|.|..+||+.|++++..|.+ ++....++.+|-+.+..++-+ --+-..+|.+++ +|+-+
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~i 78 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFI 78 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEE
Confidence 566889999999998888877 445667777777766533333 335668999888 88776
No 205
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.12 E-value=0.013 Score=40.90 Aligned_cols=96 Identities=16% Similarity=0.271 Sum_probs=66.2
Q ss_pred eeecCChhHHHHHHHHHhc-CCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCE
Q 029191 83 LTPIGSESQFDRVIAEAQQ-LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPT 161 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a~~-~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt 161 (197)
++.|.+.++++..+ . .+..++|-|+..--+ .....+.++|+.+.++..|+. +.+. ++...+++. .|+
T Consensus 2 v~~i~~~~~~e~~~----~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~---~~~~-~~~~~~~~~-~~~ 69 (102)
T cd03066 2 VEIINSERELQAFE----NIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFA---TFDS-KVAKKLGLK-MNE 69 (102)
T ss_pred ceEcCCHHHHHHHh----cccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEE---ECcH-HHHHHcCCC-CCc
Confidence 56777888999999 6 677777777766444 456678888988877888864 3333 577777765 699
Q ss_pred EEEEcC-CeEEEEE-eCCCChHHHHHHHHHHhhcc
Q 029191 162 IQLWKD-GKKQAEV-IGGHKSYLVINEVREMIGNE 194 (197)
Q Consensus 162 ~~~~~~-G~~v~~~-~G~~~~~~l~~~i~~~l~~~ 194 (197)
++++++ ......| .|..+.+ .|.++|..+
T Consensus 70 i~l~~~~~e~~~~y~~g~~~~~----~l~~fi~~~ 100 (102)
T cd03066 70 VDFYEPFMEEPVTIPDKPYSEE----ELVDFVEEH 100 (102)
T ss_pred EEEeCCCCCCCcccCCCCCCHH----HHHHHHHHh
Confidence 999976 4333456 6666774 555555443
No 206
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.99 E-value=0.011 Score=41.22 Aligned_cols=93 Identities=17% Similarity=0.208 Sum_probs=70.0
Q ss_pred eecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh-HHHHHHcCCC----C
Q 029191 84 TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP-HKLVARAGVM----K 158 (197)
Q Consensus 84 ~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~l~~~~~i~----~ 158 (197)
..|.+..+|...+ .....|+|.|..+--..-..+ ..+.++|+...+.-.++.|||...+ .-+|+++.|. -
T Consensus 4 e~i~d~KdfKKLL----RTr~NVLvLy~ks~k~a~~~L-k~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp 78 (112)
T cd03067 4 EDISDHKDFKKLL----RTRNNVLVLYSKSAKSAEALL-KLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKP 78 (112)
T ss_pred ccccchHHHHHHH----hhcCcEEEEEecchhhHHHHH-HHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCC
Confidence 3566678999999 668888888877654444444 4788888888888999999998743 3699999998 4
Q ss_pred CC-EEEEEcCCeEEEEEeCCCChH
Q 029191 159 MP-TIQLWKDGKKQAEVIGGHKSY 181 (197)
Q Consensus 159 ~P-t~~~~~~G~~v~~~~G~~~~~ 181 (197)
-| ++.-|++|.-...|....+..
T Consensus 79 ~~~~LkHYKdG~fHkdYdR~~t~k 102 (112)
T cd03067 79 KPVELKHYKDGDFHTEYNRQLTFK 102 (112)
T ss_pred CcchhhcccCCCccccccchhhHH
Confidence 45 566678998877777777763
No 207
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.58 E-value=0.039 Score=38.59 Aligned_cols=94 Identities=15% Similarity=0.265 Sum_probs=63.1
Q ss_pred eeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEE
Q 029191 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~ 162 (197)
+.+|.+.+++++.+ ..++.++|-|+..--. .....+.++|+.+.++..|+. +... ++...+++ .|++
T Consensus 2 ~~~i~s~~~l~~f~----~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~---~~~~-~~~~~~~~--~~~i 68 (104)
T cd03069 2 SVELRTEAEFEKFL----SDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAH---TSDK-QLLEKYGY--GEGV 68 (104)
T ss_pred ccccCCHHHHHHHh----ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEE---EChH-HHHHhcCC--CCce
Confidence 45677788899988 6677777777765443 467788888988877888865 3333 57888888 6888
Q ss_pred EEEcC------C-eEEEEEeCCCChHHHHHHHHHHhhc
Q 029191 163 QLWKD------G-KKQAEVIGGHKSYLVINEVREMIGN 193 (197)
Q Consensus 163 ~~~~~------G-~~v~~~~G~~~~~~l~~~i~~~l~~ 193 (197)
++|+. - .....|.|..+.+ .|.++|..
T Consensus 69 vl~~p~~~~~k~de~~~~y~g~~~~~----~l~~fi~~ 102 (104)
T cd03069 69 VLFRPPRLSNKFEDSSVKFDGDLDSS----KIKKFIRE 102 (104)
T ss_pred EEEechhhhcccCcccccccCcCCHH----HHHHHHHh
Confidence 88832 1 1223578876664 55555543
No 208
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=96.57 E-value=0.014 Score=45.06 Aligned_cols=34 Identities=24% Similarity=0.605 Sum_probs=26.5
Q ss_pred EEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEE
Q 029191 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142 (197)
Q Consensus 109 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd 142 (197)
.|.-|+|+.|-.+.|.|.++..+|+.++.+-.|-
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~ 35 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIP 35 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEE
Confidence 5889999999999999999999997667665553
No 209
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=96.56 E-value=0.026 Score=45.42 Aligned_cols=57 Identities=9% Similarity=0.207 Sum_probs=43.8
Q ss_pred eeecCChh--HHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEEC
Q 029191 83 LTPIGSES--QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV 143 (197)
Q Consensus 83 v~~v~s~~--~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~ 143 (197)
|+.++... .+-+.. +.++|+||+|.+-.||+=+.-.+.+.+++++|.+.+.|+.|-+
T Consensus 84 vv~l~g~~~~~ildf~----~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI 142 (237)
T PF00837_consen 84 VVTLDGQRSCRILDFA----KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYI 142 (237)
T ss_pred eEeeCCCcceeHHHhc----cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhH
Confidence 55555433 344555 7899999999999999999999999999999955455655544
No 210
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.065 Score=40.56 Aligned_cols=76 Identities=11% Similarity=0.133 Sum_probs=56.8
Q ss_pred cCCCeEEEEEe-cCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCCh--------------------HHHHHHcCCCC
Q 029191 101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP--------------------HKLVARAGVMK 158 (197)
Q Consensus 101 ~~~~~vvV~F~-a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~--------------------~~l~~~~~i~~ 158 (197)
-.+++||++|| ..|++-|-...-.+.+...++. -++.++-|..|... ..+++.||+..
T Consensus 28 ~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~ 107 (157)
T COG1225 28 LRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWG 107 (157)
T ss_pred hcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCccc
Confidence 45889999999 7899999999999999888883 46777777776433 16899999844
Q ss_pred ------------CCEEEEE-cCCeEEEEEeC
Q 029191 159 ------------MPTIQLW-KDGKKQAEVIG 176 (197)
Q Consensus 159 ------------~Pt~~~~-~~G~~v~~~~G 176 (197)
.++.+++ ++|+....+..
T Consensus 108 ~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~ 138 (157)
T COG1225 108 EKKMYGKEYMGIERSTFVIDPDGKIRYVWRK 138 (157)
T ss_pred ccccCccccccccceEEEECCCCeEEEEecC
Confidence 4566666 56877655544
No 211
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=96.49 E-value=0.024 Score=42.48 Aligned_cols=57 Identities=23% Similarity=0.425 Sum_probs=42.2
Q ss_pred EEEEecC------CCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCC----CCCCEEEEEcCCeEE
Q 029191 107 IIVWMAS------WCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGV----MKMPTIQLWKDGKKQ 171 (197)
Q Consensus 107 vV~F~a~------wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~---~l~~~~~i----~~~Pt~~~~~~G~~v 171 (197)
||.|+++ ||++|++++.+|+. -+|.+-.+|++.++. ++.+.++- ..+|.+++ +|+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~------~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~I 71 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILES------FRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYL 71 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHH------CCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEE
Confidence 4556677 99999999999976 357788899987752 45555554 67998887 77665
No 212
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=96.46 E-value=0.2 Score=36.97 Aligned_cols=102 Identities=10% Similarity=0.090 Sum_probs=71.3
Q ss_pred HHHHHHHHH----hcCCCeEEEEEecCCCHhHHHhhHHH---HHHHHHhCCCeEEEEEECCCChH---------------
Q 029191 91 QFDRVIAEA----QQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVPH--------------- 148 (197)
Q Consensus 91 ~f~~~~~~a----~~~~~~vvV~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~~--------------- 148 (197)
.|++++..| +...|+++|+.++|--..+..+-..+ +++.+-++.++.+.--|++..++
T Consensus 5 s~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~ 84 (136)
T cd02990 5 SLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSV 84 (136)
T ss_pred cHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHH
Confidence 355566555 67899999999998765444433322 23333334678888899887631
Q ss_pred --HHHHHcCCCCCCEEEEEc-C-C--eEEEEEeCCCChHHHHHHHHHHhh
Q 029191 149 --KLVARAGVMKMPTIQLWK-D-G--KKQAEVIGGHKSYLVINEVREMIG 192 (197)
Q Consensus 149 --~l~~~~~i~~~Pt~~~~~-~-G--~~v~~~~G~~~~~~l~~~i~~~l~ 192 (197)
...+.++...+|.+.++- . + ..+.+..|..+++++++.+...++
T Consensus 85 a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve 134 (136)
T cd02990 85 AAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAME 134 (136)
T ss_pred HHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHh
Confidence 245567899999998883 2 2 457899999999998888887765
No 213
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=96.39 E-value=0.031 Score=42.10 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=30.3
Q ss_pred CCeEEEEEe-cCCCHhHHHh-hHHHHHHHHHhC-CCe-EEEEEECC
Q 029191 103 DESVIIVWM-ASWCRKCIYL-KPKLEKLAADYH-PRL-RFYNVDVN 144 (197)
Q Consensus 103 ~~~vvV~F~-a~wC~~C~~~-~p~l~~la~~~~-~~v-~~~~vd~~ 144 (197)
+++++|.|| +.||+.|... .+.+.+..+++. .++ .++.|..|
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D 74 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN 74 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC
Confidence 455555555 8999999998 898988888873 344 46666655
No 214
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.35 E-value=0.037 Score=42.03 Aligned_cols=65 Identities=18% Similarity=0.168 Sum_probs=49.5
Q ss_pred HhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCC-eEEEEEeCC-CChHHHHHHHHH
Q 029191 120 YLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDG-KKQAEVIGG-HKSYLVINEVRE 189 (197)
Q Consensus 120 ~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G-~~v~~~~G~-~~~~~l~~~i~~ 189 (197)
.....+.++|+.+.+.+.|+.+. ++ ++++.+++.. |++++|+++ +....|.|. .+.+.|.++|..
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~~-~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~ 73 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---NE-ELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKK 73 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE----H-HHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---HH-HHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHH
Confidence 35667889999997789999876 44 6899999999 999999874 345688887 677555555543
No 215
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=95.75 E-value=0.39 Score=33.10 Aligned_cols=83 Identities=14% Similarity=0.189 Sum_probs=55.0
Q ss_pred hHHHHHHHHHhcCCCeE-EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCC
Q 029191 90 SQFDRVIAEAQQLDESV-IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDG 168 (197)
Q Consensus 90 ~~f~~~~~~a~~~~~~v-vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G 168 (197)
+++..+.. .=.++| ++.|..+. ..|..+...++++++-. +++.+-..+... ..|++.+..+|
T Consensus 8 ~qL~~~f~---~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS-dkI~~~~~~~~~------------~~P~~~i~~~~ 70 (94)
T cd02974 8 QQLKAYLE---RLENPVELVASLDDS-EKSAELLELLEEIASLS-DKITLEEDNDDE------------RKPSFSINRPG 70 (94)
T ss_pred HHHHHHHH---hCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhC-CceEEEEecCCC------------CCCEEEEecCC
Confidence 44455553 234555 44555544 99999999999999876 777664432211 47999999887
Q ss_pred eE-EEEEeCCCChHHHHHHHHH
Q 029191 169 KK-QAEVIGGHKSYLVINEVRE 189 (197)
Q Consensus 169 ~~-v~~~~G~~~~~~l~~~i~~ 189 (197)
+. -.+|.|.+...++...|..
T Consensus 71 ~~~gIrF~GiP~GhEf~Slila 92 (94)
T cd02974 71 EDTGIRFAGIPMGHEFTSLVLA 92 (94)
T ss_pred CcccEEEEecCCchhHHHHHHH
Confidence 44 2589999998655555443
No 216
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=95.52 E-value=0.064 Score=34.44 Aligned_cols=59 Identities=15% Similarity=0.271 Sum_probs=39.0
Q ss_pred EEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEE
Q 029191 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v 171 (197)
+.|+.+||+.|++.+-.+++..- .+.+..+|....+.++.+......+|++.. .+|..+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl----~~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~l 60 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI----TVELREVELKNKPAEMLAASPKGTVPVLVL-GNGTVI 60 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC----CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcEE
Confidence 45789999999999887766433 345556665443335666667778999864 346543
No 217
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=95.52 E-value=0.24 Score=37.83 Aligned_cols=26 Identities=35% Similarity=0.676 Sum_probs=24.1
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHh
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADY 132 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~ 132 (197)
|..|+..-||.|-...+.+.++.+++
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~ 27 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEY 27 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 67888999999999999999999998
No 218
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=95.46 E-value=0.57 Score=32.95 Aligned_cols=97 Identities=9% Similarity=0.080 Sum_probs=62.3
Q ss_pred eeecCChhHHHHHHHHHhcCC-CeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCE
Q 029191 83 LTPIGSESQFDRVIAEAQQLD-ESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPT 161 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a~~~~-~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt 161 (197)
++.|.+.++++..+ ... ..++|-|+..--+ .....+.++|+.+.++..|+. +.+. ++..++++. .|.
T Consensus 2 v~~i~s~~ele~f~----~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~---t~~~-~~~~~~~~~-~~~ 69 (107)
T cd03068 2 SKQLQTLKQVQEFL----RDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHH---TFDS-EIFKSLKVS-PGQ 69 (107)
T ss_pred ceEcCCHHHHHHHH----hcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEE---EChH-HHHHhcCCC-CCc
Confidence 56788889999988 444 6666666655433 466778889998878888864 3333 577888876 466
Q ss_pred EEEEcCC-------eEEEEEeCC-CChHHHHHHHHHHhhcc
Q 029191 162 IQLWKDG-------KKQAEVIGG-HKSYLVINEVREMIGNE 194 (197)
Q Consensus 162 ~~~~~~G-------~~v~~~~G~-~~~~~l~~~i~~~l~~~ 194 (197)
+++|+.- .....|.|. .+.+ +.|.+++.+|
T Consensus 70 vvl~rp~~~~~k~e~~~~~~~~~~~~~~---~~~~~f~~~~ 107 (107)
T cd03068 70 LVVFQPEKFQSKYEPKSHVLNKKDSTSE---DELKDFFKEH 107 (107)
T ss_pred eEEECcHHHhhhcCcceeeeeccccchH---HHHHHHHhcC
Confidence 7777321 123456666 3442 3477777653
No 219
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=95.19 E-value=0.015 Score=40.73 Aligned_cols=53 Identities=15% Similarity=0.193 Sum_probs=34.6
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh---HHHHHHcCCCCCCEEEEE
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP---HKLVARAGVMKMPTIQLW 165 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~---~~l~~~~~i~~~Pt~~~~ 165 (197)
+..|+.++|+.|+.....+++ .++.+-.+|+.+.+ .++.+-.+-.+.+.--++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li 56 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEE------HGIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLF 56 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHH------cCCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHH
Confidence 356889999999999888876 45667777776543 234444444444444444
No 220
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=95.12 E-value=0.016 Score=41.19 Aligned_cols=53 Identities=15% Similarity=0.293 Sum_probs=36.6
Q ss_pred EEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh---HHHHHHcCCCCCCEEEEEc
Q 029191 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP---HKLVARAGVMKMPTIQLWK 166 (197)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~---~~l~~~~~i~~~Pt~~~~~ 166 (197)
..|+.++|+.|++....|++ .++.|-.+|+.+++ .++..-++-.+.|.--+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~ 57 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE------HGVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFN 57 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH------cCCceEEecccCCcccHHHHHHHHHHcCCCHHHHHh
Confidence 46889999999999988876 46777778876655 2344444455566555554
No 221
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=95.11 E-value=0.0065 Score=50.40 Aligned_cols=89 Identities=15% Similarity=0.306 Sum_probs=64.9
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEEEEEeCCCCh
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKS 180 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~ 180 (197)
++..+|-+.||+.||+..+..+|.+.-....| ..+...-++-......+..+|++.+.|++.+...- -..++.|.+..
T Consensus 74 n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~-~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t-~~~~~~~~r~l 151 (319)
T KOG2640|consen 74 NKNDYVSLLFYASWCPFSRAVRPEFDVRSSLF-SSIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQT-CPASYRGERDL 151 (319)
T ss_pred ccCCcccccchhcccCcccccCcccchhhhhc-cccccccHHHHhhcccchhccccccCCcceeeccc-cchhhcccccH
Confidence 55789999999999999999999998777777 43333333222222257889999999999987543 33478899988
Q ss_pred HHHHHHHHHHh
Q 029191 181 YLVINEVREMI 191 (197)
Q Consensus 181 ~~l~~~i~~~l 191 (197)
..+++...+.+
T Consensus 152 ~sLv~fy~~i~ 162 (319)
T KOG2640|consen 152 ASLVNFYTEIT 162 (319)
T ss_pred HHHHHHHHhhc
Confidence 77777666554
No 222
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=94.95 E-value=0.43 Score=35.28 Aligned_cols=77 Identities=13% Similarity=0.241 Sum_probs=54.1
Q ss_pred CeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCC----CCEEEEEcCCeEEEEEeCCCC
Q 029191 104 ESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMK----MPTIQLWKDGKKQAEVIGGHK 179 (197)
Q Consensus 104 ~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~----~Pt~~~~~~G~~v~~~~G~~~ 179 (197)
..-++.|++|.||-|......++. ..+.+-.+..+.-. .+.++++|.. -=|.++ +|..+ .|--.
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~------~Gf~Vk~~~~~d~~-alK~~~gIp~e~~SCHT~VI--~Gy~v---EGHVP 92 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKA------NGFEVKVVETDDFL-ALKRRLGIPYEMQSCHTAVI--NGYYV---EGHVP 92 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHh------CCcEEEEeecCcHH-HHHHhcCCChhhccccEEEE--cCEEE---eccCC
Confidence 345788999999999988877763 45666666666665 6778888853 345555 77776 56556
Q ss_pred hHHHHHHHHHHhhccCC
Q 029191 180 SYLVINEVREMIGNENN 196 (197)
Q Consensus 180 ~~~l~~~i~~~l~~~~~ 196 (197)
. +.|+++|++..+
T Consensus 93 a----~aI~~ll~~~pd 105 (149)
T COG3019 93 A----EAIARLLAEKPD 105 (149)
T ss_pred H----HHHHHHHhCCCC
Confidence 5 688888877653
No 223
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=94.49 E-value=0.19 Score=32.88 Aligned_cols=60 Identities=17% Similarity=0.223 Sum_probs=49.7
Q ss_pred EEEEEecCCCHhHHHhhHHHHHHHHHh-CCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEc
Q 029191 106 VIIVWMASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWK 166 (197)
Q Consensus 106 vvV~F~a~wC~~C~~~~p~l~~la~~~-~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~ 166 (197)
++..|-+...+..++....+.++.+++ ++.+.+=.||+.+++ ++++.++|-++||++=..
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P-~lAe~~~ivAtPtLvk~~ 63 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQP-QLAEEDKIVATPTLVKVL 63 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCH-hHHhhCCEEEechhhhcC
Confidence 455566666688888888888888877 678999999999999 799999999999977543
No 224
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=94.21 E-value=0.9 Score=39.57 Aligned_cols=100 Identities=12% Similarity=0.133 Sum_probs=71.4
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCHhHHHhh-HHHH-HHHH-HhCCCeEEEEEECCCCh-HHHHHHcCCCCCCEEEEE-
Q 029191 91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLK-PKLE-KLAA-DYHPRLRFYNVDVNAVP-HKLVARAGVMKMPTIQLW- 165 (197)
Q Consensus 91 ~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~-p~l~-~la~-~~~~~v~~~~vd~~~~~-~~l~~~~~i~~~Pt~~~~- 165 (197)
++-.+|..+ ..++-++|.|-+--......|. -.|. .... .+...++-++|+..... ..+..-|.+..+|+++|+
T Consensus 7 nipeAIa~a-K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg 85 (506)
T KOG2507|consen 7 NIPEAIAEA-KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIG 85 (506)
T ss_pred chHHHHHHh-hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeec
Confidence 444556555 5677788888888888887777 2333 2222 22345667777765443 247777899999999999
Q ss_pred cCCeEEEEEeCCCChHHHHHHHHHHh
Q 029191 166 KDGKKQAEVIGGHKSYLVINEVREMI 191 (197)
Q Consensus 166 ~~G~~v~~~~G~~~~~~l~~~i~~~l 191 (197)
..|..+....|.-..++|...|.+..
T Consensus 86 ~sGtpLevitg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 86 FSGTPLEVITGFVTADELASSIEKVW 111 (506)
T ss_pred CCCceeEEeeccccHHHHHHHHHHHH
Confidence 68999999999999999888887764
No 225
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.58 Score=37.49 Aligned_cols=36 Identities=31% Similarity=0.293 Sum_probs=25.8
Q ss_pred HHHHHcCCCCCCEEEEEcCCeEEEEEeCCCChHHHHHHHHH
Q 029191 149 KLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYLVINEVRE 189 (197)
Q Consensus 149 ~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~~ 189 (197)
.++..+||.++||+++ +|+ .+.|....+++.+.|..
T Consensus 206 ~~a~~~gv~gTPt~~v--~~~---~~~g~~~~~~l~~~i~~ 241 (244)
T COG1651 206 KLAQQLGVNGTPTFIV--NGK---LVPGLPDLDELKAIIDE 241 (244)
T ss_pred HHHHhcCCCcCCeEEE--CCe---eecCCCCHHHHHHHHHH
Confidence 4778899999999999 555 45787777555444443
No 226
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.95 E-value=0.89 Score=40.80 Aligned_cols=87 Identities=15% Similarity=0.194 Sum_probs=62.9
Q ss_pred hHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCe
Q 029191 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGK 169 (197)
Q Consensus 90 ~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~ 169 (197)
+++..++. .-.++|-+.++.+-|..|..+...++++++.. +++.+-..+.+ ...|++.+..+|+
T Consensus 8 ~~l~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~~~------------~~~p~~~~~~~~~ 71 (517)
T PRK15317 8 TQLKQYLE---LLERPIELVASLDDSEKSAELKELLEEIASLS-DKITVEEDSLD------------VRKPSFSITRPGE 71 (517)
T ss_pred HHHHHHHH---hCCCCEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEccCC------------CCCCEEEEEcCCc
Confidence 44555554 44667766666668999999999999999886 77776432211 2479999988776
Q ss_pred E-EEEEeCCCChHHHHHHHHHHhh
Q 029191 170 K-QAEVIGGHKSYLVINEVREMIG 192 (197)
Q Consensus 170 ~-v~~~~G~~~~~~l~~~i~~~l~ 192 (197)
. -.+|.|.....++...|..+++
T Consensus 72 ~~~i~f~g~P~g~Ef~s~i~~i~~ 95 (517)
T PRK15317 72 DTGVRFAGIPMGHEFTSLVLALLQ 95 (517)
T ss_pred cceEEEEecCccHHHHHHHHHHHH
Confidence 5 3699999999777777776655
No 227
>PRK12559 transcriptional regulator Spx; Provisional
Probab=93.76 E-value=0.052 Score=39.84 Aligned_cols=35 Identities=14% Similarity=0.414 Sum_probs=26.3
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~ 147 (197)
+..|+.|+|+.|+.....|++ .++.+-.+|+.+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~------~gi~~~~~di~~~~ 36 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE------NQIDYTEKNIVSNS 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH------cCCCeEEEEeeCCc
Confidence 567889999999998887766 45666666766554
No 228
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=93.69 E-value=1.1 Score=40.30 Aligned_cols=89 Identities=17% Similarity=0.229 Sum_probs=62.5
Q ss_pred hHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCe
Q 029191 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGK 169 (197)
Q Consensus 90 ~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~ 169 (197)
+++...+. .-.++|-+.++..-|..|..+...++++++.. +++.+..-+.+. ...|++.+..+|+
T Consensus 8 ~~l~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~~~-----------~~~p~~~~~~~~~ 72 (515)
T TIGR03140 8 AQLKSYLA---SLENPVTLVLSAGSHEKSKELLELLDEIASLS-DKISLTQNTADT-----------LRKPSFTILRDGA 72 (515)
T ss_pred HHHHHHHH---hcCCCEEEEEEeCCCchhHHHHHHHHHHHHhC-CCeEEEEecCCc-----------CCCCeEEEecCCc
Confidence 44555554 34566656555557999999999999999886 887775433221 2469999988876
Q ss_pred E-EEEEeCCCChHHHHHHHHHHhhc
Q 029191 170 K-QAEVIGGHKSYLVINEVREMIGN 193 (197)
Q Consensus 170 ~-v~~~~G~~~~~~l~~~i~~~l~~ 193 (197)
. -.+|.|.+...++...|..+++-
T Consensus 73 ~~~i~f~g~P~g~Ef~s~i~~i~~~ 97 (515)
T TIGR03140 73 DTGIRFAGIPGGHEFTSLVLAILQV 97 (515)
T ss_pred ccceEEEecCCcHHHHHHHHHHHHh
Confidence 4 35899999997777777666543
No 229
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=93.27 E-value=1 Score=33.01 Aligned_cols=90 Identities=16% Similarity=0.219 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCC
Q 029191 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDG 168 (197)
Q Consensus 89 ~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G 168 (197)
.+.+.+.+.++...+.++++.=.-.. .=+.....+.++...- +. ..+.-+| .+.++|+|+.+|++++.+++
T Consensus 11 ~~~Lk~l~~~a~~~g~~~VlRG~~~~--~~~~T~~~i~~L~~~~-~~-----~~v~IdP-~lF~~f~I~~VPa~V~~~~~ 81 (130)
T TIGR02742 11 EPLLKQLLDQAEALGAPLVIRGLLDN--GFKATATRIQSLIKDG-GK-----SGVQIDP-QWFKQFDITAVPAFVVVKDG 81 (130)
T ss_pred HHHHHHHHHHHHHhCCeEEEeCCCCC--CHHHHHHHHHHHHhcC-CC-----CcEEECh-HHHhhcCceEcCEEEEECCC
Confidence 46677777665455555554422222 1233333333433332 22 2233345 68999999999999999877
Q ss_pred e-----------EEEEEeCCCChHHHHHHH
Q 029191 169 K-----------KQAEVIGGHKSYLVINEV 187 (197)
Q Consensus 169 ~-----------~v~~~~G~~~~~~l~~~i 187 (197)
. ......|.-+.+...+.|
T Consensus 82 ~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~i 111 (130)
T TIGR02742 82 LACLPEQPCPESDYDVVYGNVSLKGALEKM 111 (130)
T ss_pred CcccccCCCCCCCeeEEEecccHHHHHHHH
Confidence 4 356778888775444433
No 230
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.12 E-value=0.32 Score=32.01 Aligned_cols=57 Identities=21% Similarity=0.376 Sum_probs=39.1
Q ss_pred EEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChH---------------HHHHHcCCCCCCEEEEEcCCeEE
Q 029191 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---------------KLVARAGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~---------------~l~~~~~i~~~Pt~~~~~~G~~v 171 (197)
+.|+|-.||.|..+...++++. +.+-.|+++..-. +-.+..|--|+|.+++ .+|+.+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~------v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vV 76 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN------VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVV 76 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC------CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEE
Confidence 6899999999998888777644 3444455543321 2356678889998876 666665
No 231
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=93.08 E-value=0.056 Score=39.63 Aligned_cols=35 Identities=20% Similarity=0.438 Sum_probs=27.3
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~ 147 (197)
+..|+.+||+.|++....|++ .++.+-.+|+.+.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~------~gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE------HDIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH------cCCCcEEeeccCCh
Confidence 457889999999998888866 46677777776655
No 232
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.92 E-value=0.28 Score=39.26 Aligned_cols=42 Identities=12% Similarity=0.274 Sum_probs=34.4
Q ss_pred HHHHHcCCCCCCEEEEEcCCeEEEEEeCCCChHHHHHHHHHHhhcc
Q 029191 149 KLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYLVINEVREMIGNE 194 (197)
Q Consensus 149 ~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~~~l~~~ 194 (197)
..++++||+++||++| .+|-.+ .|..+.+.+.+.|++++...
T Consensus 175 ~~A~e~gI~gVP~fv~-d~~~~V---~Gaq~~~v~~~al~~~~~~~ 216 (225)
T COG2761 175 AAAQEMGIRGVPTFVF-DGKYAV---SGAQPYDVLEDALRQLLAEK 216 (225)
T ss_pred HHHHHCCCccCceEEE-cCcEee---cCCCCHHHHHHHHHHHHhcc
Confidence 4678899999999999 333334 89999999999999988765
No 233
>PRK09301 circadian clock protein KaiB; Provisional
Probab=92.92 E-value=0.45 Score=33.33 Aligned_cols=77 Identities=13% Similarity=0.183 Sum_probs=61.9
Q ss_pred CCCeEEEEEecCCCHhHHHhhHHHHHHHHHh-CCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEEEEEeCCCCh
Q 029191 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKS 180 (197)
Q Consensus 102 ~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~-~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~ 180 (197)
+...++=.|.|..-+..+..-..+.++.+++ .+.+.+=.||+.+++ ++++.++|-++||++=... .+..+..|..+.
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qP-elAE~~~IvATPTLIK~~P-~P~rriiGDlsd 81 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNP-QLAEEDKILATPTLAKILP-PPVRKIIGDLSD 81 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCH-hHHhHCCeEEecHHhhcCC-CCcceeeccccc
Confidence 3566777788999999999888898888876 566899999999999 7999999999999765543 356677886653
No 234
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=92.84 E-value=0.49 Score=32.17 Aligned_cols=75 Identities=15% Similarity=0.197 Sum_probs=59.4
Q ss_pred CeEEEEEecCCCHhHHHhhHHHHHHHHHh-CCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEEEEEeCCCCh
Q 029191 104 ESVIIVWMASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKS 180 (197)
Q Consensus 104 ~~vvV~F~a~wC~~C~~~~p~l~~la~~~-~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~ 180 (197)
..++=.|.|..-+.++..-..+.++.+++ .+.+.+=.||+.+++ ++++.++|-++||++=...+ +..+..|..+.
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP-~lAE~~~IvATPtLIK~~P~-P~rriiGdls~ 78 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNP-QLAEEDKILATPTLSKILPP-PVRKIIGDLSD 78 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCH-hHHhHCCEEEecHHhhcCCC-Ccceeeccccc
Confidence 44566677888888988888888888776 566899999999999 79999999999997765433 55677886653
No 235
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=92.71 E-value=1.5 Score=31.15 Aligned_cols=85 Identities=14% Similarity=0.162 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCC
Q 029191 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDG 168 (197)
Q Consensus 89 ~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G 168 (197)
.+.+.+.+.++...+-++++. .---+ .+.+....+.+-....-.. ..+.-+| .+.++|+|+.+||+++-+++
T Consensus 10 ~~~L~~l~~~a~~~~~~~V~R--G~~~g---~~~~t~~~~~~l~~~~~~~--~~v~IdP-~~F~~y~I~~VPa~V~~~~~ 81 (113)
T PF09673_consen 10 DASLRNLLKQAERAGVVVVFR--GFPDG---SFKPTAKAIQELLRKDDPC--PGVQIDP-RLFRQYNITAVPAFVVVKDR 81 (113)
T ss_pred HHHHHHHHHHHHhCCcEEEEE--CCCCC---CHHHHHHHHHHHhhccCCC--cceeECh-hHHhhCCceEcCEEEEEcCc
Confidence 567777777654443333332 22222 5555554444443111111 3333445 68999999999999998871
Q ss_pred ------------eEEEEEeCCCChH
Q 029191 169 ------------KKQAEVIGGHKSY 181 (197)
Q Consensus 169 ------------~~v~~~~G~~~~~ 181 (197)
.......|.-+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~Gdvsl~ 106 (113)
T PF09673_consen 82 VCVCLSCGCCSPEDYDVVYGDVSLD 106 (113)
T ss_pred ccccccCCcCCCCcceEEEccccHH
Confidence 2335566766654
No 236
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=92.49 E-value=0.32 Score=31.00 Aligned_cols=56 Identities=13% Similarity=0.116 Sum_probs=35.9
Q ss_pred EEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCe
Q 029191 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGK 169 (197)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~ 169 (197)
..|+.++|+.|++.+-.+++..-. .....+|......++.+......+|++. .+|.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~----~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~ 57 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS----VEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDL 57 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc----cEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCE
Confidence 467889999999998887654333 3444455544433555655667899774 3553
No 237
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=92.38 E-value=0.24 Score=34.83 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=27.4
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~ 147 (197)
+..|+.|||+.|+.....|++ .++.+-.+|+.+.+
T Consensus 1 i~iy~~~~C~~crka~~~L~~------~~i~~~~~di~~~p 35 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEA------RGVAYTFHDYRKDG 35 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHH------cCCCeEEEecccCC
Confidence 356889999999999988876 46677777776655
No 238
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=92.30 E-value=0.11 Score=37.11 Aligned_cols=35 Identities=23% Similarity=0.411 Sum_probs=26.8
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~ 147 (197)
+..|+.++|+.|++....|++ .++.+-.+|+.+++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~------~gi~~~~idi~~~~ 36 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEE------HQIPFEERNLFKQP 36 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHH------CCCceEEEecCCCc
Confidence 446778999999999888876 45667777776654
No 239
>PHA03075 glutaredoxin-like protein; Provisional
Probab=92.24 E-value=0.25 Score=35.31 Aligned_cols=29 Identities=21% Similarity=0.557 Sum_probs=26.0
Q ss_pred CeEEEEEecCCCHhHHHhhHHHHHHHHHh
Q 029191 104 ESVIIVWMASWCRKCIYLKPKLEKLAADY 132 (197)
Q Consensus 104 ~~vvV~F~a~wC~~C~~~~p~l~~la~~~ 132 (197)
|.+++.|.-|-|+-|+.....+.++..+|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 56899999999999999999998877776
No 240
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=91.85 E-value=1.7 Score=27.98 Aligned_cols=57 Identities=14% Similarity=0.117 Sum_probs=39.6
Q ss_pred EEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEE
Q 029191 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 109 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v 171 (197)
.|+.++|+.|++..=.++...- .+.+..++..+...++.+...-..+|++. .+|..+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i----~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l 57 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI----PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL 57 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE----EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE
T ss_pred CCCcCCChHHHHHHHHHHHcCC----eEEEeccCcccchhHHHhhcccccceEEE--ECCEEE
Confidence 3788999999998877755222 34556666655544566776777899997 467755
No 241
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=91.81 E-value=0.64 Score=28.46 Aligned_cols=58 Identities=14% Similarity=0.183 Sum_probs=36.4
Q ss_pred EEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChH-HHHHHcCCCCCCEEEEEcCCeEE
Q 029191 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH-KLVARAGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~-~l~~~~~i~~~Pt~~~~~~G~~v 171 (197)
..|+.++|+.|++..-.++...- .+....++...... ++.+..+-..+|++.. +|..+
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~~~ 60 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGL----PYELVPVDLGEGEQEEFLALNPLGKVPVLED--GGLVL 60 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC----CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCEEE
Confidence 35778999999998888866432 23444455443321 2455567778998865 46543
No 242
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=91.63 E-value=0.36 Score=30.62 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=36.4
Q ss_pred EEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCC---ChHHHHHHcCCCCCCEEEEEcCCeE
Q 029191 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA---VPHKLVARAGVMKMPTIQLWKDGKK 170 (197)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~---~~~~l~~~~~i~~~Pt~~~~~~G~~ 170 (197)
..|+.++|+.|++.+-.+....-. .....++... ...++.+...-..+|++.. .+|..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~----~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~ 62 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID----VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL-DDGTV 62 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC----ceEEEeecccCccCCHHHHhhCCCCCCCEEEe-CCCCE
Confidence 357789999999999888765333 3344455422 1224555556667999975 34433
No 243
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=91.16 E-value=2 Score=27.89 Aligned_cols=52 Identities=13% Similarity=0.204 Sum_probs=32.3
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh---HHHHHHcCCCCCCEEEE
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP---HKLVARAGVMKMPTIQL 164 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~---~~l~~~~~i~~~Pt~~~ 164 (197)
+..|+.++|+.|++.+-.+.+.. +.+-.++++... .++.+.-+-..+|+++.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~g------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~ 56 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELE------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD 56 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcC------CcEEEEECCCChHHHHHHHHhCCCCcccEEEe
Confidence 34677889999999888876633 333334554332 23444445567998854
No 244
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=91.13 E-value=0.19 Score=36.89 Aligned_cols=35 Identities=23% Similarity=0.427 Sum_probs=26.8
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~ 147 (197)
+..|+.|+|+.|+.....|++ .++.+-.+|+.+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~------~~i~~~~~d~~~~~ 36 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA------HQLSYKEQNLGKEP 36 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH------cCCCeEEEECCCCC
Confidence 456788999999998877765 56777777876554
No 245
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=90.93 E-value=6.5 Score=31.04 Aligned_cols=93 Identities=14% Similarity=0.203 Sum_probs=62.7
Q ss_pred cCCCeEEEEEecCCCH-hHHHhhHHHHHHHHHhC----CCe--EEEEEECCCChH-------------------------
Q 029191 101 QLDESVIIVWMASWCR-KCIYLKPKLEKLAADYH----PRL--RFYNVDVNAVPH------------------------- 148 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~-~C~~~~p~l~~la~~~~----~~v--~~~~vd~~~~~~------------------------- 148 (197)
-.+++++|.|.=..|+ -|-.....+..+.++.. .++ .++.+|-+.+.+
T Consensus 65 l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ltg~~~~~ 144 (207)
T COG1999 65 LKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLTGTPEQI 144 (207)
T ss_pred cCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeeeeCCHHHH
Confidence 5699999999977776 58777777777776663 344 455555432211
Q ss_pred -HHHHHcCCCC---------------CCEEEEE-cCCeEEEEEeCCCChHHHHHHHHHHhhc
Q 029191 149 -KLVARAGVMK---------------MPTIQLW-KDGKKQAEVIGGHKSYLVINEVREMIGN 193 (197)
Q Consensus 149 -~l~~~~~i~~---------------~Pt~~~~-~~G~~v~~~~G~~~~~~l~~~i~~~l~~ 193 (197)
++++.|+|.. -..++++ .+|+....+.+....+++.+.+++++++
T Consensus 145 ~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~~ 206 (207)
T COG1999 145 EEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLKE 206 (207)
T ss_pred HHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhhc
Confidence 4666776663 2234444 4888887877777788888888888764
No 246
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=90.46 E-value=0.68 Score=32.98 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=27.6
Q ss_pred EEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh
Q 029191 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147 (197)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~ 147 (197)
..|+.++|+.|+.....+++ .++.+-.+|+.+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA------NGIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH------cCCceEEEecCCCh
Confidence 46789999999999988877 46777888887665
No 247
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=90.41 E-value=1.2 Score=36.26 Aligned_cols=58 Identities=10% Similarity=0.021 Sum_probs=39.8
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEc
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWK 166 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~ 166 (197)
..+|+.+++..+.||+.|-..+=.+-....+| +++.+...-.+..+ .-..+||+.|..
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrf-Gn~~l~~~~S~~~d-------~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRF-GNFSLEYHYSDPYD-------NYPNTPTLIFNN 113 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhc-CCeeeEEeecCccc-------CCCCCCeEEEec
Confidence 77999999999999999987665555556667 66644433322211 234589998874
No 248
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=90.29 E-value=2.3 Score=27.37 Aligned_cols=52 Identities=19% Similarity=0.371 Sum_probs=32.0
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh-HHHHHHcCCCCCCEEEEE
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP-HKLVARAGVMKMPTIQLW 165 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~l~~~~~i~~~Pt~~~~ 165 (197)
+..|+.++|+.|++.+-.+.+.. +.+-.++++... .++ +.-+-..+|++..=
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~g------i~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~ 54 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHG------IPYEVVEVNPVSRKEI-KWSSYKKVPILRVE 54 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCC------CceEEEECCchhHHHH-HHhCCCccCEEEEC
Confidence 45678899999999997776633 333333443221 133 33455679988763
No 249
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=89.93 E-value=0.76 Score=29.20 Aligned_cols=56 Identities=11% Similarity=0.213 Sum_probs=32.2
Q ss_pred EEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeE
Q 029191 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKK 170 (197)
Q Consensus 109 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~ 170 (197)
.|+.++|+.|++.+-.+....-. +....++..... ...+..+-..+|++.. .+|..
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~----~~~~~~~~~~~~-~~~~~~~~~~vP~L~~-~~~~~ 58 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIP----VEQIILQNDDEA-TPIRMIGAKQVPILEK-DDGSF 58 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCC----eEEEECCCCchH-HHHHhcCCCccCEEEe-CCCeE
Confidence 57789999999988888663222 233334433222 2333444556898743 33544
No 250
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=87.32 E-value=0.76 Score=29.30 Aligned_cols=57 Identities=12% Similarity=0.113 Sum_probs=36.4
Q ss_pred EEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCC---hHHHHHHcCCCCCCEEEEEcCCeE
Q 029191 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV---PHKLVARAGVMKMPTIQLWKDGKK 170 (197)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~---~~~l~~~~~i~~~Pt~~~~~~G~~ 170 (197)
..|+.++|+.|++.+-.+++..- .+....+|.... .+++.+......+|++.. +|..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi----~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~ 61 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL----ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD--NGFV 61 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC----CCEEEEecCccCCcCCHHHHhhCcCCCCCEEEE--CCEE
Confidence 46789999999988887766433 345555554322 125666556668999963 4543
No 251
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=87.19 E-value=2.1 Score=28.71 Aligned_cols=54 Identities=13% Similarity=0.268 Sum_probs=35.4
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEE
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQL 164 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~ 164 (197)
+..|+.+.|+.|++.+-.+....- .+.+..++......++.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl----~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI----PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC----CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 455678889999988777765332 345555665443324556556778999875
No 252
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=85.57 E-value=0.29 Score=32.94 Aligned_cols=54 Identities=20% Similarity=0.315 Sum_probs=44.9
Q ss_pred EecCCCHhHHHhhHHHHHHHHHh-CCCeEEEEEECCCChHHHHHHcCCCCCCEEEE
Q 029191 110 WMASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVNAVPHKLVARAGVMKMPTIQL 164 (197)
Q Consensus 110 F~a~wC~~C~~~~p~l~~la~~~-~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~ 164 (197)
|-+..-+........+..+.+.+ +..+.+-.||+.+++ ++++.++|-++||++-
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P-~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQP-ELAEEDRIVATPTLIK 57 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSH-SHHTTTEEECHHHHHT
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCH-hHHhHCCeeecceEee
Confidence 44555566788888888888876 678999999999999 7999999999999764
No 253
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=83.65 E-value=1.8 Score=33.01 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=25.1
Q ss_pred HHHHHcCCCCCCEEEEEcCCeEEEEEeCCCChHHHHHH
Q 029191 149 KLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYLVINE 186 (197)
Q Consensus 149 ~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~ 186 (197)
..+.++||.++||+++ +|+.+ .|....+.+.+.
T Consensus 158 ~~a~~~gi~gvPtfvv--~g~~~---~G~~~l~~~~~~ 190 (192)
T cd03022 158 EEAIARGVFGVPTFVV--DGEMF---WGQDRLDMLEEA 190 (192)
T ss_pred HHHHHcCCCcCCeEEE--CCeee---cccccHHHHHHH
Confidence 4667889999999999 77644 788888554444
No 254
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=83.29 E-value=2.5 Score=36.09 Aligned_cols=79 Identities=13% Similarity=0.140 Sum_probs=48.1
Q ss_pred CCCHhHHH-hhHHHHHHHHHhC---CCeEEEEEECCCC--hHHHHHHcCCCC-CCEEEEEcCCeEEEEEeCCCChHHHHH
Q 029191 113 SWCRKCIY-LKPKLEKLAADYH---PRLRFYNVDVNAV--PHKLVARAGVMK-MPTIQLWKDGKKQAEVIGGHKSYLVIN 185 (197)
Q Consensus 113 ~wC~~C~~-~~p~l~~la~~~~---~~v~~~~vd~~~~--~~~l~~~~~i~~-~Pt~~~~~~G~~v~~~~G~~~~~~l~~ 185 (197)
|.|+.|+. +.....++-+.|. ..++++.+-|--| ...-...+||.+ -+-.++|.+|+.+.+..+..-.+.|.+
T Consensus 272 PgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l~~ 351 (360)
T PRK00366 272 PTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEELEA 351 (360)
T ss_pred CCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHHHH
Confidence 44555543 4444455555552 2377777777422 223356788876 557888899999887766655655555
Q ss_pred HHHHHh
Q 029191 186 EVREMI 191 (197)
Q Consensus 186 ~i~~~l 191 (197)
.|.++.
T Consensus 352 ~i~~~~ 357 (360)
T PRK00366 352 EIEAYA 357 (360)
T ss_pred HHHHHH
Confidence 555544
No 255
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=82.55 E-value=3 Score=32.74 Aligned_cols=44 Identities=18% Similarity=0.257 Sum_probs=32.0
Q ss_pred HHHHHcCCCCCCEEEEEcCCeEEEEEeC--CCChHHHHHHHHHHhh
Q 029191 149 KLVARAGVMKMPTIQLWKDGKKQAEVIG--GHKSYLVINEVREMIG 192 (197)
Q Consensus 149 ~l~~~~~i~~~Pt~~~~~~G~~v~~~~G--~~~~~~l~~~i~~~l~ 192 (197)
.++++.++.++||+++-+||+...--.| ..+.+.+...+.+.+.
T Consensus 165 ~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 165 RLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHHh
Confidence 4788999999999999999987544344 4455666666666554
No 256
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=82.18 E-value=15 Score=26.02 Aligned_cols=89 Identities=18% Similarity=0.181 Sum_probs=64.9
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHh--CCCeEEEEEECCCChHHHH----HHcCCC-CCCEEEEEc---CCeE
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADY--HPRLRFYNVDVNAVPHKLV----ARAGVM-KMPTIQLWK---DGKK 170 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~--~~~v~~~~vd~~~~~~~l~----~~~~i~-~~Pt~~~~~---~G~~ 170 (197)
.-++..+|-|--+-.+.-.++.+++.++|+.+ +++..|+-||-|..+ -+. +.|+|. .-|.+-+.. +...
T Consensus 18 d~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FP-llv~yWektF~IDl~~PqIGVV~vtdadSv 96 (120)
T cd03074 18 DLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFP-LLVPYWEKTFGIDLFRPQIGVVNVTDADSV 96 (120)
T ss_pred ccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCc-hhhHHHHhhcCcccCCCceeeEecccccce
Confidence 33677889999999999999999999999998 478999999999998 232 345664 358888874 2223
Q ss_pred EEEEeCC---CChHHHHHHHHHH
Q 029191 171 QAEVIGG---HKSYLVINEVREM 190 (197)
Q Consensus 171 v~~~~G~---~~~~~l~~~i~~~ 190 (197)
--+..+. .+.++|.++|+..
T Consensus 97 W~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 97 WMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred eEecccccccCcHHHHHHHHHhh
Confidence 3333343 5677777777654
No 257
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=81.20 E-value=3.4 Score=25.95 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=35.6
Q ss_pred EEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCC---ChHHHHHHcCCCCCCEEEEEcCCeEE
Q 029191 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA---VPHKLVARAGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~---~~~~l~~~~~i~~~Pt~~~~~~G~~v 171 (197)
..|+.++|+.|++.+-.++...-. +....+|... ...++.+...-..+|++.. +|..+
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~----~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~i 62 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIP----YEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRVL 62 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC----cEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEEE
Confidence 357789999999888777664333 3444555432 1124455445567999975 45443
No 258
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=81.06 E-value=15 Score=30.10 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=58.0
Q ss_pred cCCCeEEEEEecCCCHh-HHHhhHHH----HHHHHHhCCC--eEEEEEECCCChH-------------------------
Q 029191 101 QLDESVIIVWMASWCRK-CIYLKPKL----EKLAADYHPR--LRFYNVDVNAVPH------------------------- 148 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~-C~~~~p~l----~~la~~~~~~--v~~~~vd~~~~~~------------------------- 148 (197)
-.++.++++|.-+.||. |=.....+ .++.+..+.. -.|+.||-..+..
T Consensus 137 f~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk 216 (280)
T KOG2792|consen 137 FLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVK 216 (280)
T ss_pred cccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHH
Confidence 34999999999999974 54433333 3333333212 2677777643321
Q ss_pred HHHHHcCCCCCC-------------EEEEE---cCCeEEEEEeCCCChHHHHHHHHHHhhcc
Q 029191 149 KLVARAGVMKMP-------------TIQLW---KDGKKQAEVIGGHKSYLVINEVREMIGNE 194 (197)
Q Consensus 149 ~l~~~~~i~~~P-------------t~~~~---~~G~~v~~~~G~~~~~~l~~~i~~~l~~~ 194 (197)
.+|++|.|.--+ |+++| .+|+-++-|--+.+.+++.+.|.+-+..+
T Consensus 217 ~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~~y 278 (280)
T KOG2792|consen 217 QVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVASY 278 (280)
T ss_pred HHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHHhc
Confidence 578888875433 34555 47776655444677878888887766654
No 259
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=79.29 E-value=4.4 Score=31.10 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=24.7
Q ss_pred HHHHHcCCCCCCEEEEEcCCeEEEEEeCCCChHHHHH
Q 029191 149 KLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYLVIN 185 (197)
Q Consensus 149 ~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~ 185 (197)
..+.+.||.++||+++ +|+. ...|..+.+.+.+
T Consensus 166 ~~a~~~gv~G~Pt~vv--~g~~--~~~G~~~~~~~~~ 198 (201)
T cd03024 166 ARARQLGISGVPFFVF--NGKY--AVSGAQPPEVFLQ 198 (201)
T ss_pred HHHHHCCCCcCCEEEE--CCeE--eecCCCCHHHHHH
Confidence 4677889999999999 6653 3578888854443
No 260
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=78.99 E-value=24 Score=26.69 Aligned_cols=32 Identities=9% Similarity=0.095 Sum_probs=25.3
Q ss_pred EEEEcCCeEEEEEeCCCChHHHHHHHHHHhhc
Q 029191 162 IQLWKDGKKQAEVIGGHKSYLVINEVREMIGN 193 (197)
Q Consensus 162 ~~~~~~G~~v~~~~G~~~~~~l~~~i~~~l~~ 193 (197)
+++=++|+++.|+.-...++++...|+++|++
T Consensus 131 FLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~~ 162 (162)
T COG0386 131 FLVDRDGNVVKRFSPKTKPEDIELAIEKLLAE 162 (162)
T ss_pred EEEcCCCcEEEeeCCCCChhhHHHHHHHHhcC
Confidence 34447999999998888888888888888753
No 261
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=78.41 E-value=9.1 Score=24.52 Aligned_cols=58 Identities=7% Similarity=0.055 Sum_probs=36.2
Q ss_pred EEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCC---hHHHHHHcCCCCCCEEEEEcCCeEE
Q 029191 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV---PHKLVARAGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~---~~~l~~~~~i~~~Pt~~~~~~G~~v 171 (197)
..|+.+.|+.|++.+-.+++..- .+.+..+|.... ..++.+--.-..+|++. .+|..+
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl----~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~l 62 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL----RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNII 62 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC----CCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEEE
Confidence 46788899999888766555333 345666665321 22455555566799996 366543
No 262
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=78.10 E-value=3.4 Score=31.47 Aligned_cols=30 Identities=27% Similarity=0.586 Sum_probs=25.6
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCe
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRL 136 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v 136 (197)
|..|+-+.|+.|-...+.++++.++++.++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~ 32 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGGGI 32 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCCCc
Confidence 567889999999999999999999984333
No 263
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=78.06 E-value=13 Score=32.17 Aligned_cols=79 Identities=16% Similarity=0.291 Sum_probs=56.8
Q ss_pred CCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEEEEEeCCCChH
Q 029191 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSY 181 (197)
Q Consensus 102 ~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~~ 181 (197)
.+..-+=.|++-.|..|-..-..+.-++-- ++++.-..||-.-.. +-.+.-+|.++||+++ ||+... .|..+.+
T Consensus 115 ~g~~~FETy~SltC~nCPDVVQALN~msvl-Np~I~H~~IdGa~Fq-~Evear~IMaVPtvfl--nGe~fg--~GRmtle 188 (520)
T COG3634 115 DGDFHFETYFSLTCHNCPDVVQALNLMSVL-NPRIKHTAIDGALFQ-DEVEARNIMAVPTVFL--NGEEFG--QGRMTLE 188 (520)
T ss_pred CCceeEEEEEEeeccCChHHHHHHHHHHhc-CCCceeEEecchhhH-hHHHhccceecceEEE--cchhhc--ccceeHH
Confidence 456667778899999999888888765554 489999999886655 3344458999999987 887642 4566664
Q ss_pred HHHHH
Q 029191 182 LVINE 186 (197)
Q Consensus 182 ~l~~~ 186 (197)
++...
T Consensus 189 eilak 193 (520)
T COG3634 189 EILAK 193 (520)
T ss_pred HHHHH
Confidence 44433
No 264
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=75.30 E-value=6.1 Score=28.06 Aligned_cols=35 Identities=23% Similarity=0.205 Sum_probs=26.1
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~ 147 (197)
+..|+.|.|..|+.....|++ .++.+-.+|+-+.+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~------~gi~~~~~d~~~~p 36 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEA------AGHEVEVRDLLTEP 36 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHH------cCCCcEEeehhcCC
Confidence 457889999999998887766 45666667765544
No 265
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=75.12 E-value=14 Score=28.04 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=32.6
Q ss_pred cCCCeEEEEEecCCC-HhHHHhhHHHHHHHHHh---CCCeEEEEEECC
Q 029191 101 QLDESVIIVWMASWC-RKCIYLKPKLEKLAADY---HPRLRFYNVDVN 144 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC-~~C~~~~p~l~~la~~~---~~~v~~~~vd~~ 144 (197)
-.+++++|.|.-..| ..|-.....+.++.+.+ +.++.++.|.+|
T Consensus 50 ~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 50 LKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp GTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred hCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 459999999998888 57887777777777665 246777777776
No 266
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=74.97 E-value=44 Score=27.15 Aligned_cols=58 Identities=21% Similarity=0.258 Sum_probs=35.7
Q ss_pred cCCCeEEEEEecCCCHh--HHHhhHHHHHHHHHh----CCCeEEEEEECCCChH---HHHHHcCCCC
Q 029191 101 QLDESVIIVWMASWCRK--CIYLKPKLEKLAADY----HPRLRFYNVDVNAVPH---KLVARAGVMK 158 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~--C~~~~p~l~~la~~~----~~~v~~~~vd~~~~~~---~l~~~~~i~~ 158 (197)
+-+++|-|.+|.+---+ =....+.+.++.++| ++++.+-.+|.+.++. +.+..+||+.
T Consensus 22 ~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~ 88 (271)
T PF09822_consen 22 SLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQP 88 (271)
T ss_pred hCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCc
Confidence 45778888888665211 233444444444444 3489999999987772 2334488877
No 267
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=74.11 E-value=6.4 Score=33.45 Aligned_cols=80 Identities=9% Similarity=0.053 Sum_probs=52.3
Q ss_pred CHhHHHhhH----HHHHHHHHh---CCCeEEEEEECCCChH--HHHHHcCCCC--CCEEEEEcCCeEEEEEeCCCChHHH
Q 029191 115 CRKCIYLKP----KLEKLAADY---HPRLRFYNVDVNAVPH--KLVARAGVMK--MPTIQLWKDGKKQAEVIGGHKSYLV 183 (197)
Q Consensus 115 C~~C~~~~p----~l~~la~~~---~~~v~~~~vd~~~~~~--~l~~~~~i~~--~Pt~~~~~~G~~v~~~~G~~~~~~l 183 (197)
||.|-+..- .+.++.+++ ...+.++.+-|--|.+ .--..+||.+ -|...+|.+|+.+.+..+..-.+++
T Consensus 264 CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~eel 343 (361)
T COG0821 264 CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEEL 343 (361)
T ss_pred CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHHH
Confidence 777755433 334444444 2235666666654431 2334677765 6899999999999888888888777
Q ss_pred HHHHHHHhhcc
Q 029191 184 INEVREMIGNE 194 (197)
Q Consensus 184 ~~~i~~~l~~~ 194 (197)
...+++..++.
T Consensus 344 ~~~i~~~~~~~ 354 (361)
T COG0821 344 EALIEAYAEER 354 (361)
T ss_pred HHHHHHHHHHh
Confidence 77777776654
No 268
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=72.91 E-value=35 Score=25.07 Aligned_cols=109 Identities=13% Similarity=0.166 Sum_probs=59.5
Q ss_pred CeeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhH-HHhhHHHHHHHHH-hCCCeEEEEEECCCChH--HHHHHcC--
Q 029191 82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKC-IYLKPKLEKLAAD-YHPRLRFYNVDVNAVPH--KLVARAG-- 155 (197)
Q Consensus 82 ~v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C-~~~~p~l~~la~~-~~~~v~~~~vd~~~~~~--~l~~~~~-- 155 (197)
.+.++.|.++.++.+. +..+..+|.. .+-||-- -..+|........ ..++ .++.|=+..+.. +-++.|=
T Consensus 17 Gf~eL~T~e~Vd~~~~---~~~GTtlVvV-NSVCGCAag~ARPa~~~al~~~kkPD-~lvTVFAGqDkEAt~~aR~yf~~ 91 (136)
T PF06491_consen 17 GFEELTTAEEVDEALK---NKEGTTLVVV-NSVCGCAAGNARPAAAMALQNDKKPD-HLVTVFAGQDKEATAKAREYFEP 91 (136)
T ss_dssp T-EE--SHHHHHHHHH---H--SEEEEEE-E-SSHHHHHTHHHHHHHHHHHSS--S-EEEEEETTTSHHHHHHHHHTSTT
T ss_pred CccccCCHHHHHHHHh---CCCCcEEEEE-eccccccccccCHHHHHHHhCCCCCC-ceEEeccCCCHHHHHHHHHhcCC
Confidence 4888889999999995 2455555544 5677633 2356655443332 2232 333343444331 2344442
Q ss_pred -CCCCCEEEEEcCCeEEEEEe----CCCChHHHHHHHHHHhhccC
Q 029191 156 -VMKMPTIQLWKDGKKQAEVI----GGHKSYLVINEVREMIGNEN 195 (197)
Q Consensus 156 -i~~~Pt~~~~~~G~~v~~~~----G~~~~~~l~~~i~~~l~~~~ 195 (197)
-.+-|++.+|++|+.+.... ..++.+++.+.|....++|+
T Consensus 92 ~pPSSPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~af~~~C 136 (136)
T PF06491_consen 92 YPPSSPSIALFKDGELVHFIERHHIEGRPAEEIAENLQDAFDEYC 136 (136)
T ss_dssp S---SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHHHHHH-
T ss_pred CCCCCchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHHHHhhC
Confidence 24688999999999875433 35777888888888888764
No 269
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=72.79 E-value=2.8 Score=29.73 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=26.5
Q ss_pred EEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh
Q 029191 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147 (197)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~ 147 (197)
..|+.|.|..|++....+++ .++.+-.+|+.+.+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~------~~i~~~~~di~~~p 35 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLED------KGIEPEVVKYLKNP 35 (114)
T ss_pred EEEECCCCHHHHHHHHHHHH------CCCCeEEEeccCCC
Confidence 46889999999999888876 45666677776655
No 270
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=72.36 E-value=7.8 Score=30.62 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=27.3
Q ss_pred ChHHHHHHcCCCCCCEEEEEcCCeEEEEEeCCCChHH
Q 029191 146 VPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYL 182 (197)
Q Consensus 146 ~~~~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~~~ 182 (197)
+| .+.++|+|+.+|++++... ...+...|..+...
T Consensus 151 DP-~lF~~F~I~~VPafVv~C~-~~yD~I~GNIsl~~ 185 (212)
T PRK13730 151 DP-TLFSQYGIRSVPALVVFCS-QGYDIIRGNLRVGQ 185 (212)
T ss_pred CH-HHHHhcCCccccEEEEEcC-CCCCEEEecccHHH
Confidence 44 6899999999999999743 34567789887754
No 271
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=72.01 E-value=7.8 Score=27.57 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=38.4
Q ss_pred CHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcC--CCCCCEEEEEc
Q 029191 115 CRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAG--VMKMPTIQLWK 166 (197)
Q Consensus 115 C~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~--i~~~Pt~~~~~ 166 (197)
|++|..+.-.+...-.- ...+.+.+|+......++....| =++.|++++=.
T Consensus 24 Cp~c~~iEGlLa~~P~l-~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDL-RERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred CCchHHHHhHHhhChhh-hhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCC
Confidence 99999988887554333 36788999999988766666664 47899888843
No 272
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=71.64 E-value=2.7 Score=29.66 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=25.7
Q ss_pred EEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh
Q 029191 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147 (197)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~ 147 (197)
..|+.|.|..|++....+++ .++.+-.+|+-+.+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~------~~i~~~~~di~~~~ 35 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEE------AGIEPEIVEYLKTP 35 (112)
T ss_pred EEEECCCCHHHHHHHHHHHH------CCCCeEEEecccCC
Confidence 46889999999998877765 45666677775554
No 273
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=71.00 E-value=30 Score=23.56 Aligned_cols=54 Identities=20% Similarity=0.173 Sum_probs=35.4
Q ss_pred cCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEE
Q 029191 112 ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 112 a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v 171 (197)
..+|+.|++..=.+.+.. -...+..+|....+.++.+..-...+|++. .+|..+
T Consensus 19 ~g~cpf~~rvrl~L~eKg----i~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~i 72 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKG----VVFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEVK 72 (91)
T ss_pred CCCChhHHHHHHHHHHCC----CceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEEe
Confidence 368999999888776632 234566677666564566656667799665 355444
No 274
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=70.60 E-value=33 Score=24.83 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=32.6
Q ss_pred CCeEEEEEECCCChH---------HHHHHcCCCCCCEEEEEcCCeEEEEEeCCCChHHHHHHHH
Q 029191 134 PRLRFYNVDVNAVPH---------KLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYLVINEVR 188 (197)
Q Consensus 134 ~~v~~~~vd~~~~~~---------~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~ 188 (197)
..+.+.+-+.+.++. ++.++-|..++|-+++ +|+.+ ..-...+.++|.+++.
T Consensus 39 ~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv-~~G~YPt~eEl~~~~~ 99 (123)
T PF06953_consen 39 QGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEIV-KTGRYPTNEELAEWLG 99 (123)
T ss_dssp TT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEE-EESS---HHHHHHHHT
T ss_pred CCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEE-EecCCCCHHHHHHHhC
Confidence 579999999998873 4566679999998888 88776 3344677755555543
No 275
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=68.77 E-value=27 Score=29.06 Aligned_cols=99 Identities=15% Similarity=0.164 Sum_probs=58.7
Q ss_pred ChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChH------HHHHHcCCCCCCE
Q 029191 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH------KLVARAGVMKMPT 161 (197)
Q Consensus 88 s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~------~l~~~~~i~~~Pt 161 (197)
+.+.|++++..-.+....+...++.++|..-..=.....+|+++. ++.++- .+.+.. ++|++++. |+
T Consensus 166 ~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~v--D~miVI--Gg~~SsNT~kL~eia~~~~~---~t 238 (281)
T PF02401_consen 166 SVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEV--DAMIVI--GGKNSSNTRKLAEIAKEHGK---PT 238 (281)
T ss_dssp -HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCS--SEEEEE--S-TT-HHHHHHHHHHHHCTT---CE
T ss_pred cHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhC--CEEEEe--cCCCCccHHHHHHHHHHhCC---CE
Confidence 356666655432244555555689999999888888888887764 333333 233331 56666544 66
Q ss_pred EEE----------EcCCeEEEEEeCCCChHHHHHHHHHHhhc
Q 029191 162 IQL----------WKDGKKQAEVIGGHKSYLVINEVREMIGN 193 (197)
Q Consensus 162 ~~~----------~~~G~~v~~~~G~~~~~~l~~~i~~~l~~ 193 (197)
+++ |++.+.+.-..|..+++.+++++.+.|++
T Consensus 239 ~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eVi~~l~~ 280 (281)
T PF02401_consen 239 YHIETADELDPEWLKGVKKVGITAGASTPDWIIEEVIDRLEE 280 (281)
T ss_dssp EEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHHHHHHH
T ss_pred EEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHHHHHHhc
Confidence 665 33445677788999999999999888764
No 276
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=68.12 E-value=5.8 Score=35.99 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHH-H--HHHHHHhCCCeEEEEEECCCChH-------HHHHHcCCCC
Q 029191 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPK-L--EKLAADYHPRLRFYNVDVNAVPH-------KLVARAGVMK 158 (197)
Q Consensus 89 ~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~-l--~~la~~~~~~v~~~~vd~~~~~~-------~l~~~~~i~~ 158 (197)
.+.|+.+- +.++|+++-..-+.|..|..+... | ++.++.+..+++-++||-++.++ .+....|--|
T Consensus 102 qeaf~kar----~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GG 177 (786)
T KOG2244|consen 102 QEAFNKAR----AENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGG 177 (786)
T ss_pred HHHHHHHH----hcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCC
Confidence 45666666 889999999999999999887653 2 44566554555666777766662 1223457778
Q ss_pred CCEEEEEc
Q 029191 159 MPTIQLWK 166 (197)
Q Consensus 159 ~Pt~~~~~ 166 (197)
.|.-++..
T Consensus 178 WPmsV~LT 185 (786)
T KOG2244|consen 178 WPMSVFLT 185 (786)
T ss_pred CceeEEeC
Confidence 99777763
No 277
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=67.24 E-value=32 Score=24.11 Aligned_cols=71 Identities=20% Similarity=0.203 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCCeEEEEEe---cCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCC-CCCCEE-EEE
Q 029191 91 QFDRVIAEAQQLDESVIIVWM---ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGV-MKMPTI-QLW 165 (197)
Q Consensus 91 ~f~~~~~~a~~~~~~vvV~F~---a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i-~~~Pt~-~~~ 165 (197)
-.++.+ +.+..|+..=. .|-||.+.+...+|.. + +-+.|..+|+-+++ ++.+...- ...||+ .+|
T Consensus 7 ~I~~~i----~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~----~-g~v~~~~vnVL~d~-eiR~~lk~~s~WPT~PQLy 76 (105)
T COG0278 7 RIQKQI----KENPVVLFMKGTPEFPQCGFSAQAVQILSA----C-GVVDFAYVDVLQDP-EIRQGLKEYSNWPTFPQLY 76 (105)
T ss_pred HHHHHh----hcCceEEEecCCCCCCCCCccHHHHHHHHH----c-CCcceeEEeeccCH-HHHhccHhhcCCCCCceee
Confidence 344555 44554444444 4567777777666644 2 22889999999887 67765532 235544 344
Q ss_pred cCCeEE
Q 029191 166 KDGKKQ 171 (197)
Q Consensus 166 ~~G~~v 171 (197)
-+|+-+
T Consensus 77 i~GEfv 82 (105)
T COG0278 77 VNGEFV 82 (105)
T ss_pred ECCEEe
Confidence 488765
No 278
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=66.28 E-value=20 Score=27.82 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=40.2
Q ss_pred CCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEE
Q 029191 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 103 ~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v 171 (197)
+...+-.|+.++|+.|++..=.+++.. -.+.+..+|....++++.+..--..+|++. .+|..+
T Consensus 7 ~~~~~~Ly~~~~s~~~~rv~~~L~e~g----l~~e~~~v~~~~~~~~~~~~nP~g~VPvL~--~~g~~l 69 (211)
T PRK09481 7 KRSVMTLFSGPTDIYSHQVRIVLAEKG----VSVEIEQVEKDNLPQDLIDLNPYQSVPTLV--DRELTL 69 (211)
T ss_pred CCCeeEEeCCCCChhHHHHHHHHHHCC----CCCEEEeCCcccCCHHHHHhCCCCCCCEEE--ECCEEe
Confidence 444566677789999999987776543 234556666654433455554556799996 356543
No 279
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=66.01 E-value=19 Score=22.71 Aligned_cols=58 Identities=17% Similarity=0.172 Sum_probs=35.1
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECC---CChHHHHHHcCCCCCCEEEEEcCCeE
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN---AVPHKLVARAGVMKMPTIQLWKDGKK 170 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~---~~~~~l~~~~~i~~~Pt~~~~~~G~~ 170 (197)
+..|+.+.|+.|++..-.++...-. +....++.. ....++.+......+|++.- +|..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~----~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~--~g~~ 62 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVD----YELVPVDLTKGEHKSPEHLARNPFGQIPALED--GDLK 62 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCC----cEEEEeCccccccCCHHHHhhCCCCCCCEEEE--CCEE
Confidence 4455577799999988877664333 344445542 11224566666777998753 5544
No 280
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=63.05 E-value=6.9 Score=33.54 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=41.8
Q ss_pred CHhHHHhhHHH----HHHHHHh---CCCeEEEEEECCCChHHH--HHHcCCC-CCC-EEEEEcCCeEEEEE-eCCCChHH
Q 029191 115 CRKCIYLKPKL----EKLAADY---HPRLRFYNVDVNAVPHKL--VARAGVM-KMP-TIQLWKDGKKQAEV-IGGHKSYL 182 (197)
Q Consensus 115 C~~C~~~~p~l----~~la~~~---~~~v~~~~vd~~~~~~~l--~~~~~i~-~~P-t~~~~~~G~~v~~~-~G~~~~~~ 182 (197)
||.|=+..--+ +++.+.. ...++++.+-|--|.+.- -..||+. +-| -..+|++|+.+.+. ....-.
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~v-- 348 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIV-- 348 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHH--
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHH--
Confidence 55554433333 3433333 247899999998776311 2357776 433 68999999999776 444444
Q ss_pred HHHHHHHHhhcc
Q 029191 183 VINEVREMIGNE 194 (197)
Q Consensus 183 l~~~i~~~l~~~ 194 (197)
+.+.+.|+++
T Consensus 349 --d~L~~~I~~~ 358 (359)
T PF04551_consen 349 --DELIELIEEH 358 (359)
T ss_dssp --HHHHHHHHHH
T ss_pred --HHHHHHHHhh
Confidence 5555555544
No 281
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=62.59 E-value=13 Score=28.15 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=17.9
Q ss_pred HHHHHcCCCCCCEEEEEcCCe
Q 029191 149 KLVARAGVMKMPTIQLWKDGK 169 (197)
Q Consensus 149 ~l~~~~~i~~~Pt~~~~~~G~ 169 (197)
..+.++||.++||+++..++.
T Consensus 160 ~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 160 KLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHcCCCccCEEEEEeCCe
Confidence 467788999999999998765
No 282
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=62.20 E-value=13 Score=31.77 Aligned_cols=76 Identities=13% Similarity=0.155 Sum_probs=45.6
Q ss_pred ecCCCHhHHH-hhHHHHHHHHHh---CCCeEEEEEECCCChH--HHHHHcCCCCC--CEEEEEcCCeEEEEEeCCCChHH
Q 029191 111 MASWCRKCIY-LKPKLEKLAADY---HPRLRFYNVDVNAVPH--KLVARAGVMKM--PTIQLWKDGKKQAEVIGGHKSYL 182 (197)
Q Consensus 111 ~a~wC~~C~~-~~p~l~~la~~~---~~~v~~~~vd~~~~~~--~l~~~~~i~~~--Pt~~~~~~G~~v~~~~G~~~~~~ 182 (197)
.=|.|+.|.- +....+++.+.+ ...+.++.+-|--|.+ .-...+||-+- -..++|++|+.+.+..+ ++
T Consensus 261 SCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~kv~~----~~ 336 (346)
T TIGR00612 261 ACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAKQPE----TD 336 (346)
T ss_pred ECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEecCH----HH
Confidence 4577777753 445555555554 3457888888866542 12345777653 47888999998765543 34
Q ss_pred HHHHHHHH
Q 029191 183 VINEVREM 190 (197)
Q Consensus 183 l~~~i~~~ 190 (197)
+.+.+.+.
T Consensus 337 ~~~~l~~~ 344 (346)
T TIGR00612 337 MADELIRL 344 (346)
T ss_pred HHHHHHHh
Confidence 44444443
No 283
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=61.85 E-value=67 Score=27.21 Aligned_cols=68 Identities=12% Similarity=0.213 Sum_probs=47.5
Q ss_pred hcCCCeEEEEEecC-----CCHhHHHhhHHHHHHHHHhC------CCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCC
Q 029191 100 QQLDESVIIVWMAS-----WCRKCIYLKPKLEKLAADYH------PRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDG 168 (197)
Q Consensus 100 ~~~~~~vvV~F~a~-----wC~~C~~~~p~l~~la~~~~------~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G 168 (197)
+.++|.|.+-.-.. ...+-++++.+.++.++.+. .++.|+.+|..+..+.+. +.--+.|++++|.-.
T Consensus 247 G~sGKLVaLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD~~nqil--M~als~P~l~i~Nts 324 (468)
T KOG4277|consen 247 GASGKLVALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGNDLANQIL--MAALSEPHLFIFNTS 324 (468)
T ss_pred CcCCceEEEEEeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhHHHHHHH--HHhhcCCeEEEEecC
Confidence 36788888776643 35677889999999998872 468899888765443222 234578999999644
Q ss_pred e
Q 029191 169 K 169 (197)
Q Consensus 169 ~ 169 (197)
.
T Consensus 325 n 325 (468)
T KOG4277|consen 325 N 325 (468)
T ss_pred c
Confidence 3
No 284
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=61.49 E-value=56 Score=23.21 Aligned_cols=88 Identities=8% Similarity=0.037 Sum_probs=51.2
Q ss_pred CCeEEEEEecCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCChH-----------HHHHHcCCCC--CCEEEEEcCC
Q 029191 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVPH-----------KLVARAGVMK--MPTIQLWKDG 168 (197)
Q Consensus 103 ~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~~-----------~l~~~~~i~~--~Pt~~~~~~G 168 (197)
++++||.==++-.+.-+.....+.+-...+. .++.++.+--+.... .+.+.|++.. +-.+++=++|
T Consensus 10 ~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG 89 (118)
T PF13778_consen 10 NRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDG 89 (118)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCC
Confidence 4444333223455566666666666444442 456666663332221 6888998653 3344444889
Q ss_pred eEEEEEeCCCChHHHHHHHHHH
Q 029191 169 KKQAEVIGGHKSYLVINEVREM 190 (197)
Q Consensus 169 ~~v~~~~G~~~~~~l~~~i~~~ 190 (197)
.+..++.+..+.+++.+.|.++
T Consensus 90 ~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 90 GVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred cEEEecCCCCCHHHHHHHHhCC
Confidence 8877888888886665555443
No 285
>PRK10026 arsenate reductase; Provisional
Probab=61.10 E-value=8.3 Score=28.64 Aligned_cols=35 Identities=9% Similarity=0.082 Sum_probs=25.6
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~ 147 (197)
+..|+.|.|..|+.....|++ .++.+-.+|.-+.+
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~------~gi~~~~~d~~~~p 38 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRN------SGTEPTIIHYLETP 38 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHH------CCCCcEEEeeeCCC
Confidence 556789999999999988876 35556666654443
No 286
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=59.82 E-value=80 Score=25.19 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=33.8
Q ss_pred CCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEE
Q 029191 114 WCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQL 164 (197)
Q Consensus 114 wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~ 164 (197)
-|+.|+++.-.+. .+. ....+-.||+...++.+..-..-..+|-+.+
T Consensus 20 dcpf~qr~~m~L~---~k~-~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~ 66 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKG-VPFKVTTVDLSRKPEWFLDISPGGKPPVLKF 66 (221)
T ss_pred CChhHHHHHHHHH---HcC-CCceEEEeecCCCcHHHHhhCCCCCCCeEEe
Confidence 4888887776665 232 4678889999988866666667777887666
No 287
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=58.86 E-value=22 Score=22.31 Aligned_cols=60 Identities=13% Similarity=0.125 Sum_probs=34.8
Q ss_pred EEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEE
Q 029191 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 109 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v 171 (197)
.|+.+.|+.|.+..-.++... .+-.+....+|......++.+...-..+|++.. .+|..+
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~--~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~g~~l 62 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETG--LGDDVELVLVNPWSDDESLLAVNPLGKIPALVL-DDGEAL 62 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhC--CCCCcEEEEcCcccCChHHHHhCCCCCCCEEEE-CCCCEE
Confidence 467888999998877665521 112345555554333324555556667997754 355443
No 288
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=58.39 E-value=7 Score=28.02 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=18.3
Q ss_pred EEEEecCCCHhHHHhhHHHHH
Q 029191 107 IIVWMASWCRKCIYLKPKLEK 127 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~ 127 (197)
+..|+.|-|..|+.....+++
T Consensus 3 itiy~~p~C~t~rka~~~L~~ 23 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEE 23 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 566889999999999998876
No 289
>PRK13669 hypothetical protein; Provisional
Probab=58.20 E-value=27 Score=23.16 Aligned_cols=57 Identities=12% Similarity=0.176 Sum_probs=37.9
Q ss_pred HHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEEEEEeCCCChHHHHHHHHHHhhcc
Q 029191 124 KLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYLVINEVREMIGNE 194 (197)
Q Consensus 124 ~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~~~l~~~ 194 (197)
.++.+ +++ +++.+...+|-..= .+|++ - .+.+-||+.+ -..+.+++.+.|.+.|+++
T Consensus 19 ~~~~L-e~d-P~~dVie~gCls~C-G~C~~-----~--~FAlVng~~V----~a~t~eeL~~kI~~~i~e~ 75 (78)
T PRK13669 19 AFEKL-EKD-PNLDVLEYGCLGYC-GICSE-----G--LFALVNGEVV----EGETPEELVENIYAHLEEN 75 (78)
T ss_pred HHHHH-HhC-CCceEEEcchhhhC-cCccc-----C--ceEEECCeEe----ecCCHHHHHHHHHHHHhhc
Confidence 34444 455 88888887775443 23332 2 3444588776 3478899999999999875
No 290
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=55.46 E-value=18 Score=28.19 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=24.6
Q ss_pred HHHHcCCCCCCEEEEEcCCeEEEEEeCCCChHHHHHH
Q 029191 150 LVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYLVINE 186 (197)
Q Consensus 150 l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~ 186 (197)
-+.+.||.|+|++++=.++..-..+-|....+.+.+.
T Consensus 171 ~A~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~~~~~~ 207 (209)
T cd03021 171 EALKYGAFGLPWIVVTNDKGKTEMFFGSDRFEQVADF 207 (209)
T ss_pred HHHHcCCCCCCEEEEEcCCCCccceecCCcHHHHHHH
Confidence 4566799999999995432222366888887554444
No 291
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=54.80 E-value=51 Score=20.62 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=32.9
Q ss_pred EEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCC-CCCCEEEEEcCCeE
Q 029191 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGV-MKMPTIQLWKDGKK 170 (197)
Q Consensus 109 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i-~~~Pt~~~~~~G~~ 170 (197)
.|+.+.|+.|.+..=.++...-. +....+|......++.+.... ..+|++.. +|..
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~----~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~--~~~~ 59 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVP----YEYVEEDLGNKSELLLASNPVHKKIPVLLH--NGKP 59 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCC----CEEEEeCcccCCHHHHHhCCCCCCCCEEEE--CCEE
Confidence 46678999999988877664332 344445544333233333333 57998863 5543
No 292
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=53.55 E-value=36 Score=27.51 Aligned_cols=46 Identities=17% Similarity=0.381 Sum_probs=37.4
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHh----CCCeEEEEEECCCC
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADY----HPRLRFYNVDVNAV 146 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~----~~~v~~~~vd~~~~ 146 (197)
..+..+||-+-..+|..|..-+..++.|..++ -.+|.|+.||--..
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~ 73 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGE 73 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCc
Confidence 55888889898899999999889898888665 25799999986433
No 293
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=53.25 E-value=1.1e+02 Score=25.67 Aligned_cols=100 Identities=15% Similarity=0.134 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh-H---HHHHHcCCCCCCEEEE
Q 029191 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP-H---KLVARAGVMKMPTIQL 164 (197)
Q Consensus 89 ~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~---~l~~~~~i~~~Pt~~~ 164 (197)
.+.|++++..-.+...-+.+.++.++|..-..=.....+|+++. ++.++.-+-...+ . ++|++++ .||+++
T Consensus 168 ~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~v--D~miVVGg~~SsNT~kL~~i~~~~~---~~t~~I 242 (298)
T PRK01045 168 VDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQA--DLVIVVGSKNSSNSNRLREVAEEAG---APAYLI 242 (298)
T ss_pred HHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhC--CEEEEECCCCCccHHHHHHHHHHHC---CCEEEE
Confidence 56666655432233344444558999999888888888888864 4444433333222 1 4666654 556654
Q ss_pred ----------EcCCeEEEEEeCCCChHHHHHHHHHHhhc
Q 029191 165 ----------WKDGKKQAEVIGGHKSYLVINEVREMIGN 193 (197)
Q Consensus 165 ----------~~~G~~v~~~~G~~~~~~l~~~i~~~l~~ 193 (197)
|++-+.+.-..|..+++.+++.+...|..
T Consensus 243 e~~~el~~~~l~~~~~VGitaGASTP~~li~eV~~~l~~ 281 (298)
T PRK01045 243 DDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVIARLKE 281 (298)
T ss_pred CChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 23334567778999999999998888765
No 294
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=52.38 E-value=67 Score=22.60 Aligned_cols=67 Identities=16% Similarity=0.128 Sum_probs=46.2
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCCh-------HHHHHHcCCCCCCEEEEEcCC
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP-------HKLVARAGVMKMPTIQLWKDG 168 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~-------~~l~~~~~i~~~Pt~~~~~~G 168 (197)
-++++++|.=.|+-|+.-. -...|++|.++|+ ..+.++..-|+.-. .++..-..-..-|++-+|...
T Consensus 19 y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~~~~~~~~F~vf~ki 93 (108)
T PF00255_consen 19 YKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFCKEKFGVTFPVFEKI 93 (108)
T ss_dssp GTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHHCHCHT-SSEEBS-B
T ss_pred cCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHHHhccCCcccceEEE
Confidence 4589999999999999999 7779999999995 46888888887542 133332222234566666543
No 295
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=51.92 E-value=33 Score=23.84 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=22.7
Q ss_pred EecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh
Q 029191 110 WMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147 (197)
Q Consensus 110 F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~ 147 (197)
|+.|.|..|+.....+++ .++.+-.+|..+.+
T Consensus 1 Y~~~~C~t~rka~~~L~~------~gi~~~~~d~~k~p 32 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE------NGIEYEFIDYKKEP 32 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH------TT--EEEEETTTS-
T ss_pred CcCCCCHHHHHHHHHHHH------cCCCeEeehhhhCC
Confidence 678999999999998876 56777788987755
No 296
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=51.19 E-value=26 Score=29.91 Aligned_cols=54 Identities=15% Similarity=0.176 Sum_probs=42.7
Q ss_pred EEECCCChHHHHHHcCCCCCCEEEEEc--CCeEEEEEeCCCChHHHHHHHHHHhhcc
Q 029191 140 NVDVNAVPHKLVARAGVMKMPTIQLWK--DGKKQAEVIGGHKSYLVINEVREMIGNE 194 (197)
Q Consensus 140 ~vd~~~~~~~l~~~~~i~~~Pt~~~~~--~G~~v~~~~G~~~~~~l~~~i~~~l~~~ 194 (197)
..|..+.. .+..-|.+..+|.+.++. -|+.+.+..|...++.+...+++||+..
T Consensus 137 ~~Dtseg~-~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~~~ 192 (356)
T KOG1364|consen 137 LDDTSEGQ-PFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFIDSC 192 (356)
T ss_pred eeccCCCC-chhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHhcC
Confidence 34444333 577788999999888884 6888888888888999999999999864
No 297
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=51.09 E-value=98 Score=23.74 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=26.6
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEEC
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDV 143 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~ 143 (197)
-.++.++|.=-|+-|+.-..-...+..|.++|+ ..+.++.--|
T Consensus 32 yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPC 75 (171)
T KOG1651|consen 32 YRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPC 75 (171)
T ss_pred hCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEecc
Confidence 447777777778888877765666666666653 2344444443
No 298
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=50.65 E-value=74 Score=25.87 Aligned_cols=85 Identities=20% Similarity=0.237 Sum_probs=56.0
Q ss_pred CeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCC-----------------hHHHHHHcCCCCCCEEEEEc
Q 029191 104 ESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV-----------------PHKLVARAGVMKMPTIQLWK 166 (197)
Q Consensus 104 ~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~-----------------~~~l~~~~~i~~~Pt~~~~~ 166 (197)
.-||=.|.+..|..|=-....+.+++.+ ++|.-+...+|-- .....+.|+-.+++|=..+-
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~--~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavv 119 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADD--PGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVV 119 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccC--CCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchhee
Confidence 3455557788999999999999888887 5555444444311 11577789999988888888
Q ss_pred CCeEEEEEeCCCChHHHHHHHHHHhhc
Q 029191 167 DGKKQAEVIGGHKSYLVINEVREMIGN 193 (197)
Q Consensus 167 ~G~~v~~~~G~~~~~~l~~~i~~~l~~ 193 (197)
+|+... .| .+..++.+.|..+-.+
T Consensus 120 nGr~~~--~G-ad~~~i~~~i~a~~~~ 143 (261)
T COG5429 120 NGRVHA--NG-ADPGAIEDAIAAMARR 143 (261)
T ss_pred echhhh--cC-CCHHHHHHHHHHhhcc
Confidence 997641 34 4454555555554433
No 299
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=46.66 E-value=57 Score=20.51 Aligned_cols=57 Identities=9% Similarity=-0.039 Sum_probs=35.3
Q ss_pred EEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCC---hHHHHHHcCCCCCCEEEEEcCCeE
Q 029191 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV---PHKLVARAGVMKMPTIQLWKDGKK 170 (197)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~---~~~l~~~~~i~~~Pt~~~~~~G~~ 170 (197)
..|+.+-|+.|+.+.-.++...-. +....+|.... ..++.+......+|++.. +|..
T Consensus 2 ~ly~~~~s~~~~~v~~~l~~~g~~----~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~ 61 (76)
T cd03050 2 KLYYDLMSQPSRAVYIFLKLNKIP----FEECPIDLRKGEQLTPEFKKINPFGKVPAIVD--GDFT 61 (76)
T ss_pred EEeeCCCChhHHHHHHHHHHcCCC----cEEEEecCCCCCcCCHHHHHhCcCCCCCEEEE--CCEE
Confidence 356778899999887777664433 34455554322 124555566778998863 5544
No 300
>PRK10853 putative reductase; Provisional
Probab=46.37 E-value=37 Score=24.17 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=26.3
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~ 147 (197)
+..|+-|.|..|+.....|++ .++.+-.+|.-+.+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~------~~i~~~~~d~~k~p 36 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEA------QGIDYRFHDYRVDG 36 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHH------cCCCcEEeehccCC
Confidence 456779999999999988876 45666677765544
No 301
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=45.30 E-value=50 Score=21.94 Aligned_cols=32 Identities=13% Similarity=0.296 Sum_probs=23.3
Q ss_pred CCEEEEEcCCeEEEEEeCCCChHHHHHHHHHHhh
Q 029191 159 MPTIQLWKDGKKQAEVIGGHKSYLVINEVREMIG 192 (197)
Q Consensus 159 ~Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~~~l~ 192 (197)
-.|+.+|..|+.+ ..|..+.+++.+.+++++.
T Consensus 49 ~~t~~IF~sGki~--itGaks~~~~~~a~~~i~~ 80 (86)
T PF00352_consen 49 KATVLIFSSGKIV--ITGAKSEEEAKKAIEKILP 80 (86)
T ss_dssp TEEEEEETTSEEE--EEEESSHHHHHHHHHHHHH
T ss_pred cEEEEEEcCCEEE--EEecCCHHHHHHHHHHHHH
Confidence 3589999999875 3688888777666666543
No 302
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=44.47 E-value=1.8e+02 Score=24.12 Aligned_cols=100 Identities=16% Similarity=0.168 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh-H---HHHHHcCCCCCCEEEE
Q 029191 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP-H---KLVARAGVMKMPTIQL 164 (197)
Q Consensus 89 ~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~---~l~~~~~i~~~Pt~~~ 164 (197)
.+.|+.++..-.+.....-+.++.++|..-+.=.....+|+++. ++.++.-+-...+ . ++|+..+ .||+++
T Consensus 166 ~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~v--D~miVVGg~nSsNT~rL~ei~~~~~---~~t~~I 240 (280)
T TIGR00216 166 QEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEV--DLMIVIGGKNSSNTTRLYEIAEEHG---PPSYLI 240 (280)
T ss_pred HHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhC--CEEEEECCCCCchHHHHHHHHHHhC---CCEEEE
Confidence 55666655431121211233456899999888888888888874 3443333332222 1 4666654 567765
Q ss_pred ----------EcCCeEEEEEeCCCChHHHHHHHHHHhhc
Q 029191 165 ----------WKDGKKQAEVIGGHKSYLVINEVREMIGN 193 (197)
Q Consensus 165 ----------~~~G~~v~~~~G~~~~~~l~~~i~~~l~~ 193 (197)
|++.+.+.-..|..+++.+++++.+.|++
T Consensus 241 e~~~el~~~~l~~~~~VGiTAGASTP~~li~eVi~~l~~ 279 (280)
T TIGR00216 241 ETAEELPEEWLKGVKVVGITAGASTPDWIIEEVIRKIKE 279 (280)
T ss_pred CChHHCCHHHhCCCCEEEEEecCCCCHHHHHHHHHHHHh
Confidence 33444577778999999999998888764
No 303
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=44.30 E-value=56 Score=24.65 Aligned_cols=43 Identities=12% Similarity=0.201 Sum_probs=36.2
Q ss_pred CCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCC-CeEEEEEECC
Q 029191 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN 144 (197)
Q Consensus 102 ~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~ 144 (197)
.++-+.+.++++.++-|.-+.-.++.+|+.|.+ +|.+-.+++.
T Consensus 126 ~~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~ 169 (171)
T PF07700_consen 126 DDNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECM 169 (171)
T ss_dssp ETTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred CCCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 356788999999999999999999999999966 6777766654
No 304
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=44.02 E-value=63 Score=23.28 Aligned_cols=59 Identities=15% Similarity=0.449 Sum_probs=41.2
Q ss_pred cCCCHhHHHhhHHHHHHHHH----h---CCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEEEEEeC
Q 029191 112 ASWCRKCIYLKPKLEKLAAD----Y---HPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIG 176 (197)
Q Consensus 112 a~wC~~C~~~~p~l~~la~~----~---~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v~~~~G 176 (197)
...|..|......+.++.++ + +-.+.+-++.++.. ++++.+ -.-|++.+ ||+.+....|
T Consensus 12 g~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~--~~~~~~--~~S~~I~i--nG~piE~~l~ 77 (120)
T PF10865_consen 12 GKTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE--EFARQP--LESPTIRI--NGRPIEDLLG 77 (120)
T ss_pred CCcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH--HHhhcc--cCCCeeeE--CCEehhHhhC
Confidence 34899998877777665554 3 23578888888776 477777 67788888 8887643333
No 305
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=43.20 E-value=28 Score=24.13 Aligned_cols=56 Identities=25% Similarity=0.369 Sum_probs=34.7
Q ss_pred EecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh-HHHHHHcCCC--CCCEEEE-EcCCe
Q 029191 110 WMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP-HKLVARAGVM--KMPTIQL-WKDGK 169 (197)
Q Consensus 110 F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~~l~~~~~i~--~~Pt~~~-~~~G~ 169 (197)
||-.+|+-|......+.+... .+.+.|+ ++...+ .++.+.+++. ..-+.+. ..+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~--~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR--GGRLRFV--DIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC--CCCEEEE--ECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 788899999999998877622 1445554 552222 1345667765 3554444 46776
No 306
>PF08348 PAS_6: YheO-like PAS domain; InterPro: IPR013559 This domain is found in various hypothetical bacterial proteins that are similar to the Escherichia coli protein YheO (P64624 from SWISSPROT). Their function is unknown, but a few members are annotated as being HTH-containing proteins and putative DNA-binding proteins.
Probab=41.95 E-value=1.3e+02 Score=21.49 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=43.2
Q ss_pred HhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEEEEEeCCCChHHHHHHHHH
Q 029191 120 YLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYLVINEVRE 189 (197)
Q Consensus 120 ~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~~ 189 (197)
.+.|..+-+++-+++...++--|.+..+. +++.+.||....|-.|....+...+.+++
T Consensus 4 ~y~~l~~~l~~~lG~~~EVVLHDl~~~~~------------sIv~I~Ng~vsgR~vGdp~t~~~l~~l~~ 61 (118)
T PF08348_consen 4 SYIPLVDFLAATLGPNCEVVLHDLSDPEH------------SIVAIANGHVSGRKVGDPITDLALELLKE 61 (118)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEECCCCCC------------EEEEEECCCccCCccCCchhHHHHHHHhc
Confidence 46778888889998888888888876542 67888899888888888777544444443
No 307
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=40.94 E-value=1.8e+02 Score=23.42 Aligned_cols=64 Identities=19% Similarity=0.304 Sum_probs=42.2
Q ss_pred EEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEEEEEeCCCChH
Q 029191 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSY 181 (197)
Q Consensus 109 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~~ 181 (197)
-|.-..|..|..+...++. +-+-++|+|. |+...+ .++-+-+|-++|.+++ +|+.+ +.+.-+++
T Consensus 15 I~~HktC~ssy~Lf~~L~n--kgll~~Vkii--~a~~p~-f~~~~~~V~SvP~Vf~--DGel~--~~dpVdp~ 78 (265)
T COG5494 15 IFTHKTCVSSYMLFEYLEN--KGLLGKVKII--DAELPP-FLAFEKGVISVPSVFI--DGELV--YADPVDPE 78 (265)
T ss_pred EEEecchHHHHHHHHHHHh--cCCCCCceEE--EcCCCh-HHHhhcceeecceEEE--cCeEE--EcCCCCHH
Confidence 3557789999888777654 1112667764 455555 5666668999999876 88775 34555563
No 308
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=40.37 E-value=26 Score=28.39 Aligned_cols=65 Identities=8% Similarity=0.049 Sum_probs=45.8
Q ss_pred ecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCC
Q 029191 85 PIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM 157 (197)
Q Consensus 85 ~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~ 157 (197)
.|.....+.+.. ..+++++ -|.|.|+.++.+...++++.+.. +......++.++.+ .+..+|||.
T Consensus 207 ~Ip~~~~v~~A~----~~g~pv~--~~~p~s~~a~~~~~la~ell~~~-~~~~~~~~~~~~~~-~~~~~~~~~ 271 (275)
T TIGR01287 207 FVPRSNIVQKAE----IRKMTVI--EYDPESEQANEYRELAKKIYENT-EFVIPTPLTMDELE-EILMKFGIM 271 (275)
T ss_pred ECCCChHHHHHH----HcCCceE--EeCCCCHHHHHHHHHHHHHHhcC-CCCCCCCCCHHHHH-HHHHHHHHh
Confidence 344444555555 6677775 35789999999999888887765 45666777777776 688888874
No 309
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=39.94 E-value=1.9e+02 Score=22.83 Aligned_cols=80 Identities=18% Similarity=0.285 Sum_probs=49.2
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh-----------------HHHHHHcCCCC--CCEEEEEcC
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP-----------------HKLVARAGVMK--MPTIQLWKD 167 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-----------------~~l~~~~~i~~--~Pt~~~~~~ 167 (197)
|=.|.+..|..|=.....|.+|+.+ ++|..+...+|--+ ....+.++..+ +|.+++ |
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~--~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV--n 77 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAAR--PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV--N 77 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHH--TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--T
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcC--CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--C
Confidence 3357788999999999999999998 57777767665221 14566676665 677776 9
Q ss_pred CeEEEEEeCCCChHHHHHHHHHHhhc
Q 029191 168 GKKQAEVIGGHKSYLVINEVREMIGN 193 (197)
Q Consensus 168 G~~v~~~~G~~~~~~l~~~i~~~l~~ 193 (197)
|... .+..+.+.+...|.+....
T Consensus 78 G~~~---~~g~~~~~~~~ai~~~~~~ 100 (202)
T PF06764_consen 78 GREH---RVGSDRAAVEAAIQAARAR 100 (202)
T ss_dssp TTEE---EETT-HHHHHHHHHHHHHT
T ss_pred Ceee---eeccCHHHHHHHHHHhhcc
Confidence 8774 3345555556666655443
No 310
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=39.72 E-value=55 Score=21.71 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=37.8
Q ss_pred hHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEEEEEeCCCChHHHHHHHHHHhhcc
Q 029191 122 KPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQAEVIGGHKSYLVINEVREMIGNE 194 (197)
Q Consensus 122 ~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~~~l~~~ 194 (197)
...+++|.+ . +++.+...+|-..= ..|. ..|-. +-||+.+ -..+.++|.+.|.+.|++.
T Consensus 17 ~~~~~~Le~-~-p~~~Vie~gCl~~C-g~C~-----~~pFA--lVnG~~V----~A~t~eeL~~kI~~~i~e~ 75 (78)
T PF07293_consen 17 DQVYEKLEK-D-PDIDVIEYGCLSYC-GPCA-----KKPFA--LVNGEIV----AAETAEELLEKIKEKIEEN 75 (78)
T ss_pred HHHHHHHhc-C-CCccEEEcChhhhC-cCCC-----CCccE--EECCEEE----ecCCHHHHHHHHHHHHhcc
Confidence 445666553 4 78888777775442 1222 23333 3478776 3478889999999999875
No 311
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=38.62 E-value=67 Score=23.19 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=24.5
Q ss_pred EEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCC
Q 029191 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV 146 (197)
Q Consensus 107 vV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~ 146 (197)
+..|+-|.|..|++....|++ .++.+-.+|.-+.
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~------~gi~~~~~d~~~~ 36 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKA------SGHDVEVQDILKE 36 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHH------CCCCcEEEeccCC
Confidence 456778999999999988876 3455555565443
No 312
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=38.36 E-value=2.1e+02 Score=23.07 Aligned_cols=67 Identities=9% Similarity=-0.005 Sum_probs=46.9
Q ss_pred CCCeEEEEEecCCCHhH-----------------HHhhHHHHHHHHHh-C--CCeEEEEEECCCCh-----HHHHHHcCC
Q 029191 102 LDESVIIVWMASWCRKC-----------------IYLKPKLEKLAADY-H--PRLRFYNVDVNAVP-----HKLVARAGV 156 (197)
Q Consensus 102 ~~~~vvV~F~a~wC~~C-----------------~~~~p~l~~la~~~-~--~~v~~~~vd~~~~~-----~~l~~~~~i 156 (197)
++.++.|..++|.|++. ..+...++++...| . ..+.++.+|+.... -.+++.+.-
T Consensus 111 s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~ 190 (240)
T smart00053 111 SPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP 190 (240)
T ss_pred cCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH
Confidence 46788999999988543 34555677777776 2 34888888875421 157788888
Q ss_pred CCCCEEEEEcCC
Q 029191 157 MKMPTIQLWKDG 168 (197)
Q Consensus 157 ~~~Pt~~~~~~G 168 (197)
.+.||+.++.+-
T Consensus 191 ~~~rti~ViTK~ 202 (240)
T smart00053 191 QGERTIGVITKL 202 (240)
T ss_pred cCCcEEEEEECC
Confidence 889999888543
No 313
>PHA00009 F capsid protein
Probab=36.85 E-value=13 Score=30.83 Aligned_cols=12 Identities=75% Similarity=0.974 Sum_probs=10.9
Q ss_pred CccceeeCcccc
Q 029191 1 MYGAIRLSPSLR 12 (197)
Q Consensus 1 ~~~~~~~~~~~~ 12 (197)
|+||||+||..|
T Consensus 46 ~vgairlsplrr 57 (427)
T PHA00009 46 MVGAIRLSPLRR 57 (427)
T ss_pred hhcceecchhhc
Confidence 899999999876
No 314
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.79 E-value=78 Score=25.45 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=25.8
Q ss_pred CCeEEEEEec-CCCHhHHHhhHHHHHHHHHhCCCe
Q 029191 103 DESVIIVWMA-SWCRKCIYLKPKLEKLAADYHPRL 136 (197)
Q Consensus 103 ~~~vvV~F~a-~wC~~C~~~~p~l~~la~~~~~~v 136 (197)
...+-|++|+ +-||.|-..++.|+++..++.+.+
T Consensus 3 ~~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~ 37 (225)
T COG2761 3 PMKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEV 37 (225)
T ss_pred CceEEEEEEeCCcCchhhcCHHHHHHHHHhcCcce
Confidence 3445555554 579999999999999999984343
No 315
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.70 E-value=1.6e+02 Score=23.67 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=38.2
Q ss_pred CCeEEEEEe----cCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHc----CCCCCCEEEEEcCCeEE
Q 029191 103 DESVIIVWM----ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARA----GVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 103 ~~~vvV~F~----a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~----~i~~~Pt~~~~~~G~~v 171 (197)
.++|++..= .|-||-.+++..++.. -+|.+...|+-.++ ++.+.. +...+|.+++ +|+-+
T Consensus 138 a~~v~lFmKG~p~~P~CGFS~~~v~iL~~------~nV~~~~fdIL~De-elRqglK~fSdWPTfPQlyI--~GEFi 205 (227)
T KOG0911|consen 138 AKPVMLFMKGTPEEPKCGFSRQLVGILQS------HNVNYTIFDVLTDE-ELRQGLKEFSDWPTFPQLYV--KGEFI 205 (227)
T ss_pred cCeEEEEecCCCCcccccccHHHHHHHHH------cCCCeeEEeccCCH-HHHHHhhhhcCCCCccceeE--CCEec
Confidence 445554432 5678888888877755 45668888998887 565544 3334555444 88654
No 316
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=34.33 E-value=1.1e+02 Score=21.88 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=21.4
Q ss_pred HHHcCCCCCCEEEEEcCCeEEEEEeCCCChHHHHHH
Q 029191 151 VARAGVMKMPTIQLWKDGKKQAEVIGGHKSYLVINE 186 (197)
Q Consensus 151 ~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~ 186 (197)
+-.+||+.+|.++| +++.+ ..|..+...-...
T Consensus 76 Aw~lgi~k~PAVVf--D~~~V--VYG~tDV~~A~~~ 107 (114)
T PF07511_consen 76 AWSLGITKYPAVVF--DDRYV--VYGETDVARALAR 107 (114)
T ss_pred HHHhCccccCEEEE--cCCeE--EecccHHHHHHHH
Confidence 45789999999998 44432 2787776433333
No 317
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=32.88 E-value=1.5e+02 Score=23.88 Aligned_cols=49 Identities=18% Similarity=0.193 Sum_probs=36.1
Q ss_pred CHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEEE
Q 029191 115 CRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQA 172 (197)
Q Consensus 115 C~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v~ 172 (197)
-.||..+...+++++++++..+.++--|+.-.. .|. =.++.+++|+.+.
T Consensus 168 mkHsv~iMk~Lrrla~el~KtiviVlHDINfAS-----~Ys----D~IVAlK~G~vv~ 216 (252)
T COG4604 168 MKHSVQIMKILRRLADELGKTIVVVLHDINFAS-----CYS----DHIVALKNGKVVK 216 (252)
T ss_pred hHHHHHHHHHHHHHHHHhCCeEEEEEecccHHH-----hhh----hheeeecCCEEEe
Confidence 479999999999999999666777766765443 221 1477889998863
No 318
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=32.55 E-value=93 Score=24.07 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=24.7
Q ss_pred EEEEEcCCeEEEEEeCCCChHHHHHHHHHHhhc
Q 029191 161 TIQLWKDGKKQAEVIGGHKSYLVINEVREMIGN 193 (197)
Q Consensus 161 t~~~~~~G~~v~~~~G~~~~~~l~~~i~~~l~~ 193 (197)
++++|+.|+.+ .+|..+.+.+...++++++.
T Consensus 55 a~LIF~SGK~V--cTGaKs~ed~~~av~~~~~~ 85 (185)
T COG2101 55 AALIFRSGKVV--CTGAKSVEDVHRAVKKLAKK 85 (185)
T ss_pred eEEEEecCcEE--EeccCcHHHHHHHHHHHHHH
Confidence 78888999875 47999998888888777653
No 319
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=31.63 E-value=1.2e+02 Score=18.97 Aligned_cols=58 Identities=7% Similarity=-0.055 Sum_probs=31.0
Q ss_pred EEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeEE
Q 029191 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~v 171 (197)
..+|.+-|+.|+...-.+++..-. .....++.+...+++...-.-..+|++.. +|..+
T Consensus 3 ~Ly~~~~~~~~~~v~~~L~~~~i~----~e~~~v~~~~~~~~~~~~~p~~~vP~l~~--~~~~l 60 (73)
T cd03076 3 TLTYFPVRGRAEAIRLLLADQGIS----WEEERVTYEEWQESLKPKMLFGQLPCFKD--GDLTL 60 (73)
T ss_pred EEEEeCCcchHHHHHHHHHHcCCC----CEEEEecHHHhhhhhhccCCCCCCCEEEE--CCEEE
Confidence 345667799999777777654332 34445554322212222222345898853 55443
No 320
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=30.73 E-value=1.7e+02 Score=19.75 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=23.1
Q ss_pred CCeEEEEEECCCChH---HHHHHcC----CCCCCEEEEEcCCeEE
Q 029191 134 PRLRFYNVDVNAVPH---KLVARAG----VMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 134 ~~v~~~~vd~~~~~~---~l~~~~~----i~~~Pt~~~~~~G~~v 171 (197)
.+|.|-.+|++.++. ++.+..+ -..+|.+++ +|+.+
T Consensus 29 k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi--~~~~i 71 (92)
T cd03030 29 KKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFN--GDEYC 71 (92)
T ss_pred CCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEE--CCEEe
Confidence 578999999988762 2333322 356777765 66655
No 321
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=30.50 E-value=1.3e+02 Score=18.81 Aligned_cols=58 Identities=7% Similarity=0.064 Sum_probs=34.9
Q ss_pred EEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCC--ChHHHHHHcCCCCCCEEEEEcCCeEE
Q 029191 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA--VPHKLVARAGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 109 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~--~~~~l~~~~~i~~~Pt~~~~~~G~~v 171 (197)
.|+.+-|+.|.+..-.++... -.+.+..+|... ...++.+..-...+|++.. .+|..+
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~g----i~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~-~~g~~l 62 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYNG----LDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEG-ADGFCL 62 (75)
T ss_pred EecCCCCccHHHHHHHHHHcC----CceEEEecccccccCCHHHHHhCCCCCCCEEEc-CCCCEE
Confidence 466778898988877776532 234555666542 1224555555667999865 345443
No 322
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=30.37 E-value=1.2e+02 Score=23.99 Aligned_cols=39 Identities=15% Similarity=0.359 Sum_probs=26.7
Q ss_pred HHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeE
Q 029191 125 LEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKK 170 (197)
Q Consensus 125 l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~ 170 (197)
+.++.+.+ +.-.++ |... .+.++|+|+.+|+++. .+|+.
T Consensus 158 ~~~l~~~l-~~~vYf----dQ~g-~Lt~rF~I~~VPavV~-q~g~~ 196 (202)
T TIGR02743 158 VNELEKRL-DSRIYF----DQHG-KLTQKFGIKHVPARVS-QEGLR 196 (202)
T ss_pred HHHHHHHh-CCceEE----cCCc-hHhhccCceeeceEEE-ecCCE
Confidence 45667776 332222 5555 6899999999999986 56654
No 323
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=29.85 E-value=1.4e+02 Score=21.26 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=19.6
Q ss_pred HHHcCCCCCCEEEEEcCCeEEEEEeCCCChH
Q 029191 151 VARAGVMKMPTIQLWKDGKKQAEVIGGHKSY 181 (197)
Q Consensus 151 ~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~~ 181 (197)
+-.+||+.+|.++| +++.+ .+|..+..
T Consensus 77 Aw~lGi~k~PAVV~--D~~~V--VYG~~DV~ 103 (113)
T TIGR03757 77 AWQLGVTKIPAVVV--DRRYV--VYGETDVA 103 (113)
T ss_pred HHHcCCccCCEEEE--cCCeE--EecCccHH
Confidence 45789999999998 44432 36877764
No 324
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=29.70 E-value=3.1e+02 Score=24.67 Aligned_cols=77 Identities=18% Similarity=0.332 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCC-HhHHHhhHHHHHHHHHh-CCCeEEEEEECCCChHHHHHHcCCCCCC--EEEEEc
Q 029191 91 QFDRVIAEAQQLDESVIIVWMASWC-RKCIYLKPKLEKLAADY-HPRLRFYNVDVNAVPHKLVARAGVMKMP--TIQLWK 166 (197)
Q Consensus 91 ~f~~~~~~a~~~~~~vvV~F~a~wC-~~C~~~~p~l~~la~~~-~~~v~~~~vd~~~~~~~l~~~~~i~~~P--t~~~~~ 166 (197)
+|++...+.++.-..+||.||.+-- ..=..++..+.++.++| ..++.++.+.-.......+-+.++...| +++||-
T Consensus 269 ~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~Ld~g~~~~~~d~L~f~~ 348 (499)
T PF05679_consen 269 NFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKTGEFSRGAALDVGAKKFPPDSLLFFC 348 (499)
T ss_pred HHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecCCCccHHHHHHhhcccCCCCcEEEEE
Confidence 4444433333455678888988543 32334566777777777 2356666666222222344455666554 555554
Q ss_pred C
Q 029191 167 D 167 (197)
Q Consensus 167 ~ 167 (197)
+
T Consensus 349 D 349 (499)
T PF05679_consen 349 D 349 (499)
T ss_pred e
Confidence 3
No 325
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=29.50 E-value=1.1e+02 Score=22.26 Aligned_cols=26 Identities=23% Similarity=0.577 Sum_probs=19.5
Q ss_pred cCCCHhHHHhhHHHHHHHHHhCCCeEEEEE
Q 029191 112 ASWCRKCIYLKPKLEKLAADYHPRLRFYNV 141 (197)
Q Consensus 112 a~wC~~C~~~~p~l~~la~~~~~~v~~~~v 141 (197)
-+-|..|.. +++++.+.| +++.+..+
T Consensus 105 ~~pC~SC~~---vi~qF~~~~-pni~~~v~ 130 (133)
T PF14424_consen 105 LPPCESCSN---VIEQFKKDF-PNIKVNVV 130 (133)
T ss_pred CCcChhHHH---HHHHHHHHC-CCcEEEEe
Confidence 566999985 777888899 87776554
No 326
>KOG0324 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.05 E-value=57 Score=25.93 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=41.3
Q ss_pred EecCCCHhHHHhhHHHHHHHHHhC-CCeEEEEEECCCChHHHHHHcCCCCCCEEE
Q 029191 110 WMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVPHKLVARAGVMKMPTIQ 163 (197)
Q Consensus 110 F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~ 163 (197)
.....| ++..+..++++|+++|. ....++.=||....+++|..+..+.+|..+
T Consensus 80 lG~Td~-~~~~v~~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP~wi 133 (214)
T KOG0324|consen 80 LGSTDL-TEDDVRRILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIPSWV 133 (214)
T ss_pred ecCCCC-CHHHHHHHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCccHHH
Confidence 334443 78899999999999994 458888889988877888888888888543
No 327
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=27.64 E-value=92 Score=19.06 Aligned_cols=55 Identities=13% Similarity=0.076 Sum_probs=29.2
Q ss_pred EecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCC---ChHHHHHHcCCCCCCEEEEEcCCeE
Q 029191 110 WMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA---VPHKLVARAGVMKMPTIQLWKDGKK 170 (197)
Q Consensus 110 F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~---~~~~l~~~~~i~~~Pt~~~~~~G~~ 170 (197)
|+.+.|+.|.+.+-.++.. +-.+....+|... ...++.+......+|++.. +|..
T Consensus 4 ~~~~~~~~~~~~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~ 61 (73)
T cd03042 4 YSYFRSSASYRVRIALNLK----GLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVI--DGLV 61 (73)
T ss_pred ecCCCCcchHHHHHHHHHc----CCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEE--CCEE
Confidence 4455566666665544443 2334555566522 1124555556678998853 4543
No 328
>PRK10387 glutaredoxin 2; Provisional
Probab=26.70 E-value=1.4e+02 Score=22.73 Aligned_cols=56 Identities=13% Similarity=0.261 Sum_probs=30.7
Q ss_pred EEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeE
Q 029191 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKK 170 (197)
Q Consensus 109 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~ 170 (197)
.++.+.|+.|.+..=.++...-. +....++..... ...+......+|+++. .+|..
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~gi~----y~~~~~~~~~~~-~~~~~~p~~~VPvL~~-~~g~~ 58 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLKNIP----VELIVLANDDEA-TPIRMIGQKQVPILQK-DDGSY 58 (210)
T ss_pred EEeCCCCchHHHHHHHHHHcCCC----eEEEEcCCCchh-hHHHhcCCcccceEEe-cCCeE
Confidence 45678899999988777654332 333334433322 1122223456998854 35544
No 329
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=25.65 E-value=3.9e+02 Score=22.21 Aligned_cols=98 Identities=14% Similarity=0.179 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh-H---HHHHHcCCCCCCEEEE
Q 029191 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP-H---KLVARAGVMKMPTIQL 164 (197)
Q Consensus 89 ~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~---~l~~~~~i~~~Pt~~~ 164 (197)
.+.|..++..-.....-+ .++.++|..-..=.....+|+++. ++.++.-+-...+ . ++|++.+ .||+++
T Consensus 169 ~~~~~~iv~~l~~~~~~~--~v~~TIC~aT~~RQ~a~~~La~~v--D~miVVGg~~SsNT~rL~eia~~~~---~~t~~I 241 (281)
T PRK12360 169 PELWEDILNVIKLKSKEL--VFFNTICSATKKRQESAKELSKEV--DVMIVIGGKHSSNTQKLVKICEKNC---PNTFHI 241 (281)
T ss_pred HHHHHHHHHHHHHhCccc--ccCCCcchhhhhHHHHHHHHHHhC--CEEEEecCCCCccHHHHHHHHHHHC---CCEEEE
Confidence 556665554321222222 346899998888888888888774 4444433333322 1 5666654 456665
Q ss_pred E----------cCCeEEEEEeCCCChHHHHHHHHHHhhc
Q 029191 165 W----------KDGKKQAEVIGGHKSYLVINEVREMIGN 193 (197)
Q Consensus 165 ~----------~~G~~v~~~~G~~~~~~l~~~i~~~l~~ 193 (197)
= ++-+.+.-..|..+++.+++.+...|++
T Consensus 242 e~~~el~~~~~~~~~~VGitaGASTP~~li~eV~~~l~~ 280 (281)
T PRK12360 242 ETADELDLEMLKDYKIIGITAGASTPDWIIEEVIKKIKN 280 (281)
T ss_pred CChHHCCHHHhCCCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence 3 2334566778999999999988887764
No 330
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=25.51 E-value=1.4e+02 Score=22.82 Aligned_cols=30 Identities=17% Similarity=0.328 Sum_probs=23.8
Q ss_pred EEEEEcCCeEEEEEeCCCChHHHHHHHHHHhh
Q 029191 161 TIQLWKDGKKQAEVIGGHKSYLVINEVREMIG 192 (197)
Q Consensus 161 t~~~~~~G~~v~~~~G~~~~~~l~~~i~~~l~ 192 (197)
|+++|..|+.+ .+|..+.+++...++++..
T Consensus 140 ~~lIF~SGKvv--itGaks~~~~~~a~~~i~~ 169 (174)
T cd04518 140 VLLLFSSGKMV--ITGAKSEEDAKRAVEKLLS 169 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHHHH
Confidence 78889999875 4799999888877777654
No 331
>PRK00394 transcription factor; Reviewed
Probab=25.03 E-value=1.5e+02 Score=22.80 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=24.7
Q ss_pred CEEEEEcCCeEEEEEeCCCChHHHHHHHHHHhh
Q 029191 160 PTIQLWKDGKKQAEVIGGHKSYLVINEVREMIG 192 (197)
Q Consensus 160 Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~~~l~ 192 (197)
.|+.+|..|+.+ .+|..+.+++...++++++
T Consensus 47 ~t~lIf~sGKiv--~tGa~S~~~a~~a~~~~~~ 77 (179)
T PRK00394 47 IAALIFRSGKVV--CTGAKSVEDLHEAVKIIIK 77 (179)
T ss_pred eEEEEEcCCcEE--EEccCCHHHHHHHHHHHHH
Confidence 689999999875 4798999888777777654
No 332
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=24.93 E-value=1.3e+02 Score=22.46 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=23.4
Q ss_pred EEecCCCHhHHHhhHHHHHHHHHhCCCeEE
Q 029191 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRF 138 (197)
Q Consensus 109 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~ 138 (197)
.|+-.-||.|-...+.++++..+++-.+.+
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~ 32 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHGATVRY 32 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhCCeeEE
Confidence 455678999999999999999888433443
No 333
>PRK15113 glutathione S-transferase; Provisional
Probab=24.86 E-value=1.6e+02 Score=22.63 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=37.0
Q ss_pred CeEEEEEecC--CCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCC---hHHHHHHcCCCCCCEEEEEcCCeEE
Q 029191 104 ESVIIVWMAS--WCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV---PHKLVARAGVMKMPTIQLWKDGKKQ 171 (197)
Q Consensus 104 ~~vvV~F~a~--wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~---~~~l~~~~~i~~~Pt~~~~~~G~~v 171 (197)
++-+..|+.+ .|+.|++..-.+++..- .+.+..+|.... .+++.+..-...+|++.. +|..+
T Consensus 3 ~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi----~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~--~~~~l 69 (214)
T PRK15113 3 KPAITLYSDAHFFSPYVMSAFVALQEKGL----PFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQH--DDFEL 69 (214)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHcCC----CCeEEEeCCCCccccCHHHHhcCCCCCCCEEEE--CCEEE
Confidence 4556666755 59999888777766433 345556665432 124554444556999973 55443
No 334
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=24.61 E-value=1.7e+02 Score=22.39 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=23.3
Q ss_pred CEEEEEcCCeEEEEEeCCCChHHHHHHHHHHhh
Q 029191 160 PTIQLWKDGKKQAEVIGGHKSYLVINEVREMIG 192 (197)
Q Consensus 160 Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~~~l~ 192 (197)
.|+.+|..|+.+ .+|..+.+++...+++++.
T Consensus 48 ~t~lIf~sGKiv--itGaks~~~~~~a~~~~~~ 78 (174)
T cd00652 48 TTALIFSSGKMV--ITGAKSEEDAKLAARKYAR 78 (174)
T ss_pred EEEEEECCCEEE--EEecCCHHHHHHHHHHHHH
Confidence 489999999875 4688888777777666543
No 335
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=24.56 E-value=3.6e+02 Score=21.45 Aligned_cols=72 Identities=15% Similarity=0.131 Sum_probs=41.5
Q ss_pred cCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHH-HcCCCCCCEEEEEcCCeEEEEE
Q 029191 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVA-RAGVMKMPTIQLWKDGKKQAEV 174 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~-~~~i~~~Pt~~~~~~G~~v~~~ 174 (197)
..++.-+..=|||+.|--..|...-.++.++- -+|.+..+.....+ +... --++..+|...+..+|....++
T Consensus 2 ~rGrLkIflG~apGVGKTy~ML~ea~~l~~~G-~DVViG~vethgR~-et~~l~~gLe~iP~~~i~y~g~~~~E~ 74 (211)
T PF02702_consen 2 RRGRLKIFLGAAPGVGKTYAMLQEAHRLKEQG-VDVVIGYVETHGRP-ETEALLEGLEVIPRKKIEYRGRTLEEM 74 (211)
T ss_dssp ----EEEEEESSTTSSHHHHHHHHHHHHHHTT---EEEEE---TT-H-HHHHHHCTS-B---EEEEETTEEEEE-
T ss_pred CCccEEEEEecCCCCCHHHHHHHHHHHHHHCC-CCEEEEEecCCCcH-HHHHHHcCCCcCCCeeEeeCCEecccC
Confidence 34667777778999998887777666665553 78999998887776 3443 3488899998888888776443
No 336
>KOG2868 consensus Decapping enzyme complex component DCP1 [Transcription; RNA processing and modification]
Probab=24.02 E-value=1.3e+02 Score=25.49 Aligned_cols=42 Identities=14% Similarity=0.267 Sum_probs=26.5
Q ss_pred HHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEc
Q 029191 119 IYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWK 166 (197)
Q Consensus 119 ~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~ 166 (197)
++..|.++++.... +.+.+++.|...++ +.+.+|.| ||++|+
T Consensus 21 ~r~DP~ik~Ild~a-shva~Y~fd~~~~e---WnKtdiEG--tffvY~ 62 (335)
T KOG2868|consen 21 QRIDPYIKSILDVA-SHVALYTFDFGANE---WNKTDIEG--TFFVYK 62 (335)
T ss_pred hhhCHHHHHHHhhc-cceeEEEeccccch---hhhcccee--EEEEEE
Confidence 34456666666554 66777777777665 55666666 466664
No 337
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=23.85 E-value=1.8e+02 Score=22.33 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=24.0
Q ss_pred CEEEEEcCCeEEEEEeCCCChHHHHHHHHHHhh
Q 029191 160 PTIQLWKDGKKQAEVIGGHKSYLVINEVREMIG 192 (197)
Q Consensus 160 Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~~~l~ 192 (197)
.|+++|..|+.+ .+|..+.++....++++++
T Consensus 48 ~t~lIF~SGKiv--~tGaks~~~a~~a~~~~~~ 78 (174)
T cd04518 48 IAALIFRSGKMV--CTGAKSVEDLHRAVKEIIK 78 (174)
T ss_pred EEEEEECCCeEE--EEccCCHHHHHHHHHHHHH
Confidence 589999999875 4788888877777776644
No 338
>PRK00394 transcription factor; Reviewed
Probab=23.80 E-value=1.8e+02 Score=22.41 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=23.1
Q ss_pred CEEEEEcCCeEEEEEeCCCChHHHHHHHHHHh
Q 029191 160 PTIQLWKDGKKQAEVIGGHKSYLVINEVREMI 191 (197)
Q Consensus 160 Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~~~l 191 (197)
-|+++|..|+.+ .+|..+.+++.+.++.+.
T Consensus 140 ~~~lIF~SGKvv--itGaks~~~~~~a~~~i~ 169 (179)
T PRK00394 140 VVVLLFGSGKLV--ITGAKSEEDAEKAVEKIL 169 (179)
T ss_pred EEEEEEcCCEEE--EEecCCHHHHHHHHHHHH
Confidence 478899999875 479899887777776654
No 339
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=23.79 E-value=1.8e+02 Score=22.19 Aligned_cols=31 Identities=19% Similarity=0.346 Sum_probs=23.0
Q ss_pred CEEEEEcCCeEEEEEeCCCChHHHHHHHHHHhh
Q 029191 160 PTIQLWKDGKKQAEVIGGHKSYLVINEVREMIG 192 (197)
Q Consensus 160 Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~~~l~ 192 (197)
.|+.+|..|+.+ .+|..+.+++...++++++
T Consensus 48 ~t~lIF~sGKiv--iTGaks~~~~~~a~~~~~~ 78 (174)
T cd04517 48 ATASVWSSGKIT--ITGATSEEEAKQAARRAAR 78 (174)
T ss_pred EEEEEECCCeEE--EEccCCHHHHHHHHHHHHH
Confidence 378889999875 4788888777777666543
No 340
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=23.32 E-value=1.9e+02 Score=22.20 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=21.6
Q ss_pred EEEEEcCCeEEEEEeCCCChHHHHHHHHHHh
Q 029191 161 TIQLWKDGKKQAEVIGGHKSYLVINEVREMI 191 (197)
Q Consensus 161 t~~~~~~G~~v~~~~G~~~~~~l~~~i~~~l 191 (197)
|+++|..|+.+ .+|..+.++....+++++
T Consensus 49 t~lIF~SGKiv--iTGaks~e~a~~a~~~i~ 77 (174)
T cd04516 49 TALIFSSGKMV--CTGAKSEDDSKLAARKYA 77 (174)
T ss_pred EEEEECCCeEE--EEecCCHHHHHHHHHHHH
Confidence 68899999875 468888877666665554
No 341
>PHA02151 hypothetical protein
Probab=23.19 E-value=53 Score=24.99 Aligned_cols=16 Identities=13% Similarity=0.596 Sum_probs=12.8
Q ss_pred cCCCeEEEEEecCCCH
Q 029191 101 QLDESVIIVWMASWCR 116 (197)
Q Consensus 101 ~~~~~vvV~F~a~wC~ 116 (197)
+.+..-+|.||..||.
T Consensus 201 nr~h~~~v~fy~kwct 216 (217)
T PHA02151 201 NRNHDRYVHFYKKWCT 216 (217)
T ss_pred cccCceEEEEehhhcc
Confidence 4556678999999994
No 342
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=23.11 E-value=5.5e+02 Score=23.96 Aligned_cols=99 Identities=18% Similarity=0.222 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCCh-H---HHHHHcCCCCCCEEEE
Q 029191 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP-H---KLVARAGVMKMPTIQL 164 (197)
Q Consensus 89 ~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~---~l~~~~~i~~~Pt~~~ 164 (197)
.+.|.+++..-......+ .++.++|.+-..=.....+|+++. ++.++.-+-...+ . ++|+..+ .||+++
T Consensus 166 ~~~~~~~~~~l~~~~~~~--~~~~tiC~at~~Rq~a~~~la~~~--d~~~vvGg~~SsNt~~L~~i~~~~~---~~~~~i 238 (647)
T PRK00087 166 QENFEKVLKELKKKGKEV--KVFNTICNATEVRQEAAEKLAKKV--DVMIVVGGKNSSNTTKLYEICKSNC---TNTIHI 238 (647)
T ss_pred HHHHHHHHHHHHHhCCCc--ccCCCcchhhhhHHHHHHHHHhhC--CEEEEECCCCCccHHHHHHHHHHHC---CCEEEE
Confidence 556666554321223333 336899998888888888888764 4444433332222 1 4666654 567765
Q ss_pred ----------EcCCeEEEEEeCCCChHHHHHHHHHHhhcc
Q 029191 165 ----------WKDGKKQAEVIGGHKSYLVINEVREMIGNE 194 (197)
Q Consensus 165 ----------~~~G~~v~~~~G~~~~~~l~~~i~~~l~~~ 194 (197)
|++-+.+.-..|..+++.+++.+...|+..
T Consensus 239 e~~~el~~~~~~~~~~vgitagaStP~~~i~~v~~~l~~~ 278 (647)
T PRK00087 239 ENAGELPEEWFKGVKIIGVTAGASTPDWIIEEVIKKMSEL 278 (647)
T ss_pred CChHHCCHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHh
Confidence 333345777789999999999988888764
No 343
>PLN00062 TATA-box-binding protein; Provisional
Probab=22.91 E-value=1.8e+02 Score=22.37 Aligned_cols=30 Identities=17% Similarity=0.154 Sum_probs=22.4
Q ss_pred CEEEEEcCCeEEEEEeCCCChHHHHHHHHHHh
Q 029191 160 PTIQLWKDGKKQAEVIGGHKSYLVINEVREMI 191 (197)
Q Consensus 160 Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~~~l 191 (197)
.|+++|..|+.+ .+|..+.+++...+++++
T Consensus 48 ~t~lIF~SGKiv--iTGaks~e~a~~a~~~~~ 77 (179)
T PLN00062 48 TTALIFASGKMV--CTGAKSEHDSKLAARKYA 77 (179)
T ss_pred EEEEEECCCeEE--EEecCCHHHHHHHHHHHH
Confidence 388999999875 468888877766666554
No 344
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=22.75 E-value=5.1e+02 Score=22.50 Aligned_cols=99 Identities=15% Similarity=0.313 Sum_probs=59.3
Q ss_pred CeeecCChhHHHHHHHHHhcCCCeEEEEEecCC-CHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCC
Q 029191 82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASW-CRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMP 160 (197)
Q Consensus 82 ~v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~w-C~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~P 160 (197)
.|..|++..+++..-. -...+-+|-|+-+- ..+ ...+++.|+.|.+-+.|+. +-++ .++++++++ +=
T Consensus 147 PVeiIn~~~e~~~Fe~---ied~~klIGyFk~~~s~~----yk~FeeAAe~F~p~IkFfA---tfd~-~vAk~L~lK-~n 214 (383)
T PF01216_consen 147 PVEIINNKHELKAFER---IEDDIKLIGYFKSEDSEH----YKEFEEAAEHFQPYIKFFA---TFDK-KVAKKLGLK-LN 214 (383)
T ss_dssp SEEEE-SHHHHHHHHH-----SS-EEEEE-SSTTSHH----HHHHHHHHHHCTTTSEEEE---E-SH-HHHHHHT-S-TT
T ss_pred chhhhcChhhhhhhhh---cccceeEEEEeCCCCcHH----HHHHHHHHHhhcCceeEEE---Eecc-hhhhhcCcc-cc
Confidence 3777888777766543 23456677766654 443 3456788999988899885 5666 699999997 77
Q ss_pred EEEEEcC--CeEEEEEeCCCChHHHHHHHHHHhhccCC
Q 029191 161 TIQLWKD--GKKQAEVIGGHKSYLVINEVREMIGNENN 196 (197)
Q Consensus 161 t~~~~~~--G~~v~~~~G~~~~~~l~~~i~~~l~~~~~ 196 (197)
.+-||.. .+++ ..-|.... .+.|.+++++|..
T Consensus 215 ev~fyepF~~~pi-~ip~~p~~---e~e~~~fi~~h~r 248 (383)
T PF01216_consen 215 EVDFYEPFMDEPI-TIPGKPYT---EEELVEFIEEHKR 248 (383)
T ss_dssp -EEEE-TTSSSEE-EESSSS-----HHHHHHHHHHT-S
T ss_pred ceeeeccccCCCc-cCCCCCCC---HHHHHHHHHHhch
Confidence 8888864 3344 44454332 3677777777653
No 345
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=22.57 E-value=1.4e+02 Score=23.75 Aligned_cols=39 Identities=13% Similarity=0.217 Sum_probs=25.8
Q ss_pred HHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEE-cCCeE
Q 029191 126 EKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLW-KDGKK 170 (197)
Q Consensus 126 ~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~-~~G~~ 170 (197)
.++.+.+ +.-.++ |... .+.++|+|+.+|+++.= .+|+.
T Consensus 157 ~~~~~~l-~~~vYf----dQ~G-~Lt~rF~I~~VPAvV~~~q~G~~ 196 (209)
T PRK13738 157 PEMSKAL-DSRIYF----DQNG-VLCQRFGIDQVPARVSAVPGGRF 196 (209)
T ss_pred HHHHHHh-CCceEE----cCcc-hHHHhcCCeeeceEEEEcCCCCE
Confidence 4556666 222222 5554 58999999999999862 56665
No 346
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.52 E-value=76 Score=28.26 Aligned_cols=35 Identities=14% Similarity=0.387 Sum_probs=24.2
Q ss_pred CeeecCChhHHHHHHHHHhcCCCeEEEEEecCCCHhHHHhhHH
Q 029191 82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPK 124 (197)
Q Consensus 82 ~v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~~C~~~~p~ 124 (197)
.++.|++-++|..++ ++++.++ ||||+.-.-...+
T Consensus 466 ~~~~v~~~~eF~~aL----~~k~iil----aPwcg~~ecE~~I 500 (551)
T KOG4163|consen 466 HIVKVNTWEEFVKAL----DQKKIIL----APWCGEIECEKDI 500 (551)
T ss_pred heeeeeeHHHHHHHh----ccCCEEE----ccccCcHHHHHHH
Confidence 467777788888888 6666554 8999864443333
No 347
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=22.41 E-value=32 Score=25.53 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.3
Q ss_pred CCHhHHHhhHHHH
Q 029191 114 WCRKCIYLKPKLE 126 (197)
Q Consensus 114 wC~~C~~~~p~l~ 126 (197)
-|++|++..|.+.
T Consensus 11 ~CPhCRQ~ipALt 23 (163)
T TIGR02652 11 RCPHCRQNIPALT 23 (163)
T ss_pred cCchhhcccchhe
Confidence 5999999999873
No 348
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=22.37 E-value=31 Score=25.55 Aligned_cols=13 Identities=31% Similarity=0.605 Sum_probs=11.3
Q ss_pred CCHhHHHhhHHHH
Q 029191 114 WCRKCIYLKPKLE 126 (197)
Q Consensus 114 wC~~C~~~~p~l~ 126 (197)
-|++|++..|.+.
T Consensus 8 ~CPhCRq~ipALt 20 (161)
T PF09654_consen 8 QCPHCRQTIPALT 20 (161)
T ss_pred cCchhhcccchhe
Confidence 5999999999873
No 349
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=21.99 E-value=2e+02 Score=21.98 Aligned_cols=29 Identities=14% Similarity=0.302 Sum_probs=21.9
Q ss_pred EEEEEcCCeEEEEEeCCCChHHHHHHHHHHh
Q 029191 161 TIQLWKDGKKQAEVIGGHKSYLVINEVREMI 191 (197)
Q Consensus 161 t~~~~~~G~~v~~~~G~~~~~~l~~~i~~~l 191 (197)
|+++|..|+.+ ..|..+.+++.+.++.++
T Consensus 141 t~lIF~sGkvv--itGaks~~~~~~a~~~i~ 169 (174)
T cd00652 141 VLLIFVSGKIV--ITGAKSREDIYEAVEKIY 169 (174)
T ss_pred EEEEEcCCEEE--EEecCCHHHHHHHHHHHH
Confidence 67888999874 478899877777766654
No 350
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=21.22 E-value=98 Score=24.15 Aligned_cols=29 Identities=21% Similarity=0.558 Sum_probs=19.6
Q ss_pred eeecCChhHHHHHHHHHhcCCCeEEEEEecCCCH--hHH
Q 029191 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCR--KCI 119 (197)
Q Consensus 83 v~~v~s~~~f~~~~~~a~~~~~~vvV~F~a~wC~--~C~ 119 (197)
+..++|.++|.+.+ +.++.| .+|||+ .|-
T Consensus 128 ~~~~~~~~e~~~~~----~~~~~v----~~~wcg~~~~e 158 (202)
T cd00862 128 TRIVDTWEEFKEAL----NEKGIV----LAPWCGEEECE 158 (202)
T ss_pred eEeeCCHHHHHHHH----hcCCEE----EEEecCCHHHH
Confidence 55677788888888 445544 368997 554
No 351
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=21.00 E-value=2.1e+02 Score=22.11 Aligned_cols=55 Identities=13% Similarity=0.207 Sum_probs=29.1
Q ss_pred EecCCCHhHHHhhHHHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCCCCCEEEEEcCCeE
Q 029191 110 WMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQLWKDGKK 170 (197)
Q Consensus 110 F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~ 170 (197)
++.+.|+.|++.+=.+....-.| ....++..... ...+......+|++.. .+|..
T Consensus 3 y~~~~sp~~~kvr~~L~~~gl~~----e~~~~~~~~~~-~~~~~np~g~vP~l~~-~~g~~ 57 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLKNIPV----EKHVLLNDDEE-TPIRMIGAKQVPILQK-DDGRA 57 (209)
T ss_pred ecCCCCChHHHHHHHHHHcCCCe----EEEECCCCcch-hHHHhcCCCCcceEEe-eCCeE
Confidence 55778999998877776533222 22222222222 2223323467997753 45544
No 352
>PLN00062 TATA-box-binding protein; Provisional
Probab=20.98 E-value=2.1e+02 Score=22.07 Aligned_cols=29 Identities=10% Similarity=0.249 Sum_probs=20.8
Q ss_pred EEEEEcCCeEEEEEeCCCChHHHHHHHHHHh
Q 029191 161 TIQLWKDGKKQAEVIGGHKSYLVINEVREMI 191 (197)
Q Consensus 161 t~~~~~~G~~v~~~~G~~~~~~l~~~i~~~l 191 (197)
++++|..|+.+ ..|..+.+++.+.+..++
T Consensus 140 ~~liF~sGkvv--itGaks~~~~~~ai~~i~ 168 (179)
T PLN00062 140 VLLIFVSGKIV--ITGAKVREEIYTAFENIY 168 (179)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHHH
Confidence 67788888874 478888877766666543
No 353
>COG1582 FlgEa Uncharacterized protein, possibly involved in motility [Cell motility and secretion]
Probab=20.20 E-value=2.4e+02 Score=17.98 Aligned_cols=33 Identities=27% Similarity=0.278 Sum_probs=21.3
Q ss_pred CCCCCC-EEEEEcCCeEEEEEeCCCChHHHHHHHHHH
Q 029191 155 GVMKMP-TIQLWKDGKKQAEVIGGHKSYLVINEVREM 190 (197)
Q Consensus 155 ~i~~~P-t~~~~~~G~~v~~~~G~~~~~~l~~~i~~~ 190 (197)
.|..+| |.+..-+|++. .-..+.+++.+.|.++
T Consensus 21 ~ie~~PDttItLinGkky---vVkEsveEVi~kI~~y 54 (67)
T COG1582 21 TIEAFPDTTITLINGKKY---VVKESVEEVINKIIEY 54 (67)
T ss_pred hhhccCCcEEEEEcCcEE---EEcccHHHHHHHHHHH
Confidence 478899 66666788764 2335666666666654
No 354
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=20.07 E-value=2.3e+02 Score=21.74 Aligned_cols=29 Identities=10% Similarity=0.257 Sum_probs=21.2
Q ss_pred EEEEEcCCeEEEEEeCCCChHHHHHHHHHHh
Q 029191 161 TIQLWKDGKKQAEVIGGHKSYLVINEVREMI 191 (197)
Q Consensus 161 t~~~~~~G~~v~~~~G~~~~~~l~~~i~~~l 191 (197)
++++|..|+.+ ..|..+.+++.+.+..++
T Consensus 140 ~~liF~sGkvv--itGaks~~~~~~a~~~i~ 168 (174)
T cd04516 140 VLLIFVSGKIV--LTGAKSREEIYQAFENIY 168 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHHH
Confidence 46778888875 478888877777776654
Done!