BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029195
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FLC|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 58 NVQVIERPCPVPNIEPWEIPYVHYPKPKTYSRAECACNPVRYFAILSM---QRSGSGWFE 114
N++ +E P I +PY P R+EC C+ R+ L M Q + WFE
Sbjct: 277 NLKEMEEPFEKQQIGSSAMPYKRNPM-----RSECCCSLARHLMTLVMDPLQTASVQWFE 331
Query: 115 TLLNNHTN 122
L++ N
Sbjct: 332 RTLDDSAN 339
>pdb|3MXO|A Chain A, Crystal Structure Oh Human Phosphoglycerate Mutase Family
Member 5 (Pgam5)
pdb|3MXO|B Chain B, Crystal Structure Oh Human Phosphoglycerate Mutase Family
Member 5 (Pgam5)
pdb|3O0T|A Chain A, Crystal Structure Of Human Phosphoglycerate Mutase Family
Member 5 (Pgam5) In Complex With Phosphate
pdb|3O0T|B Chain B, Crystal Structure Of Human Phosphoglycerate Mutase Family
Member 5 (Pgam5) In Complex With Phosphate
Length = 202
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 92 CACNPVRYFAILSMQRSGSGWFETLLNN----HTNISSNGEV 129
C N +RY ++Q GW LNN H I NG V
Sbjct: 142 CHANVIRYIVCRALQFPPEGWLRLSLNNGSITHLVIRPNGRV 183
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 27.3 bits (59), Expect = 5.9, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 95 NPVRYFAILSMQRSGSGWFETLLNNHTNISSNGEVFSV 132
NP R + + SG+GW + N +N S + FS+
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236
>pdb|2EAD|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With Substrate
pdb|2EAD|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With Substrate
Length = 899
Score = 26.9 bits (58), Expect = 6.4, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 86 TYSRAECACNPVRYF-AILSMQRSGSGWFETLLNNHTNISSNGEVFSVK 133
TY+R A NP A L+ ++G F + +TN S GE +VK
Sbjct: 177 TYTREYFASNPDNVMVARLTASKAGKLNFNVSMPTNTNYSKTGETTTVK 225
>pdb|2EAB|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum (Apo Form)
pdb|2EAB|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum (Apo Form)
pdb|2EAC|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With
Deoxyfuconojirimycin
pdb|2EAC|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With
Deoxyfuconojirimycin
Length = 899
Score = 26.9 bits (58), Expect = 6.4, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 86 TYSRAECACNPVRYF-AILSMQRSGSGWFETLLNNHTNISSNGEVFSVK 133
TY+R A NP A L+ ++G F + +TN S GE +VK
Sbjct: 177 TYTREYFASNPDNVMVARLTASKAGKLNFNVSMPTNTNYSKTGETTTVK 225
>pdb|2EAE|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complexes With Products
Length = 898
Score = 26.9 bits (58), Expect = 6.5, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 86 TYSRAECACNPVRYF-AILSMQRSGSGWFETLLNNHTNISSNGEVFSVK 133
TY+R A NP A L+ ++G F + +TN S GE +VK
Sbjct: 176 TYTREYFASNPDNVMVARLTASKAGKLNFNVSMPTNTNYSKTGETTTVK 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,227,780
Number of Sequences: 62578
Number of extensions: 180231
Number of successful extensions: 344
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 342
Number of HSP's gapped (non-prelim): 9
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)