BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029195
         (197 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P06237|NOH4_RHIML Nodulation protein H OS=Rhizobium meliloti GN=nodH PE=4 SV=1
          Length = 247

 Score = 45.1 bits (105), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 27/37 (72%)

Query: 96  PVRYFAILSMQRSGSGWFETLLNNHTNISSNGEVFSV 132
           P R FAIL+M+R+G+ + E L+N H N+ SNGE+ + 
Sbjct: 7   PPRPFAILAMRRTGTHYLEELVNEHPNVLSNGELLNT 43


>sp|P06236|NODH_RHIME Nodulation protein H OS=Rhizobium meliloti (strain 1021) GN=nodH
           PE=4 SV=1
          Length = 247

 Score = 42.4 bits (98), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 26/37 (70%)

Query: 96  PVRYFAILSMQRSGSGWFETLLNNHTNISSNGEVFSV 132
           P + FAIL+M R+G+ + E L+N H N+ SNGE+ + 
Sbjct: 7   PPQPFAILAMPRTGTHYLEELVNEHPNVLSNGELLNT 43


>sp|P52994|NODH_RHITR Nodulation protein H OS=Rhizobium tropici GN=nodH PE=4 SV=1
          Length = 249

 Score = 42.4 bits (98), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 24/32 (75%)

Query: 100 FAILSMQRSGSGWFETLLNNHTNISSNGEVFS 131
           F IL+M R+G+ + E LLN+H NI SNGE+ +
Sbjct: 11  FVILAMPRTGTHYLEALLNDHPNILSNGELLN 42


>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4
          Length = 34350

 Score = 34.3 bits (77), Expect = 0.49,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 66/167 (39%), Gaps = 29/167 (17%)

Query: 7     SFTKDTFNLKSPKKSPLVLRMLVLVFVMVCGVYICSVCVKQIS--ARTKSEFLNVQVIER 64
             ++TKD  NLK+ + +        L+ +  C  Y     V  I   A  KS F+NV+V++ 
Sbjct: 21736 TWTKDNINLKN-RANIENTESFTLLIIPECNRYDTGKFVMTIENPAGKKSGFVNVRVLDT 21794

Query: 65    PCPVPNIEP-----------WEIPYV-------------HYPKPKTYSRAECACNPVRYF 100
             P PV N+ P           W++P +                  K+YS A   C+   Y 
Sbjct: 21795 PGPVLNLRPTDITKDSVTLHWDLPLIDGGSRITNYIVEKREATRKSYSTATTKCHKCTY- 21853

Query: 101   AILSMQRSGSGWFETLLNNHTNISSNGEVFSVKVRRSNASTIVETLD 147
              +  +      +F  +  N   I    E  +  V+ S A +  ++L+
Sbjct: 21854 KVTGLSEGCEYFFRVMAENEYGIGEPTET-TEPVKASEAPSPPDSLN 21899


>sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1
          Length = 35213

 Score = 33.1 bits (74), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 7     SFTKDTFNLKSPKKSPLVLRMLVLVFVMVCGVYICSVCVKQIS--ARTKSEFLNVQVIER 64
             ++TKD  NLK  + +        L+ +  C  Y     V  I   A  KS F+NV+V++ 
Sbjct: 22598 TWTKDNINLKH-RANIENTESFTLLIIPECNRYDTGKFVMTIENPAGKKSGFVNVRVLDT 22656

Query: 65    PCPVPNIEPWEI 76
             P PV N+ P +I
Sbjct: 22657 PGPVLNLRPTDI 22668


>sp|Q25490|APLP_MANSE Apolipophorins OS=Manduca sexta PE=2 SV=1
          Length = 3305

 Score = 32.3 bits (72), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 52   TKSEFLNVQVIERPCPVPNIEPWEIPYVHYPKPKTYSRAECACNPVRYFAIL 103
            ++SEF N   + R CP  N    +   +H P PK   R     +P+R  +++
Sbjct: 2884 SESEFGNSYRLSRSCPAANAPAHDHHQMHAPLPKPCERVFSGTSPLRPLSLM 2935


>sp|Q68FR2|BIN2_RAT Bridging integrator 2 OS=Rattus norvegicus GN=Bin2 PE=2 SV=1
          Length = 507

 Score = 30.0 bits (66), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 131 SVKVRRSNASTIVETLDKIYNLDW 154
           +VKV R ++  + ETL +IYN DW
Sbjct: 70  AVKVMRESSKRVSETLQEIYNSDW 93


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.134    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,625,614
Number of Sequences: 539616
Number of extensions: 2518282
Number of successful extensions: 6198
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6174
Number of HSP's gapped (non-prelim): 30
length of query: 197
length of database: 191,569,459
effective HSP length: 111
effective length of query: 86
effective length of database: 131,672,083
effective search space: 11323799138
effective search space used: 11323799138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)