Query 029195
Match_columns 197
No_of_seqs 59 out of 61
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 09:01:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029195.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029195hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09037 Sulphotransf: Stf0 su 99.6 5.9E-17 1.3E-21 137.4 -2.2 96 100-197 2-127 (245)
2 PF13469 Sulfotransfer_3: Sulf 97.3 0.0001 2.2E-09 54.1 1.8 34 98-131 1-35 (215)
3 PF00685 Sulfotransfer_1: Sulf 97.3 8.3E-05 1.8E-09 58.2 0.9 28 99-126 3-30 (267)
4 COG4424 Uncharacterized protei 94.4 0.014 3.1E-07 51.9 0.6 98 96-197 4-131 (250)
5 KOG3988 Protein-tyrosine sulfo 85.6 0.44 9.4E-06 44.7 1.6 40 86-131 65-104 (378)
6 KOG3703 Heparan sulfate N-deac 58.9 7 0.00015 39.9 2.4 36 92-127 590-625 (873)
7 PF09127 Leuk-A4-hydro_C: Leuk 57.8 8.3 0.00018 30.8 2.2 41 141-181 52-104 (143)
8 KOG1584 Sulfotransferase [Gene 56.8 7.4 0.00016 35.7 2.0 18 100-117 42-59 (297)
9 PLN02164 sulfotransferase 51.4 8.4 0.00018 35.2 1.5 18 100-117 82-99 (346)
10 KOG0417 Ubiquitin-protein liga 49.6 12 0.00025 31.6 1.9 25 119-143 74-103 (148)
11 KOG3491 Predicted membrane pro 47.6 15 0.00033 27.3 2.0 25 16-40 30-54 (65)
12 KOG0423 Ubiquitin-protein liga 40.1 12 0.00026 33.0 0.6 14 119-132 83-96 (223)
13 smart00212 UBCc Ubiquitin-conj 38.6 28 0.00061 26.9 2.4 40 119-158 72-117 (145)
14 PRK09913 putative fructose-lik 38.5 51 0.0011 25.1 3.8 80 64-146 63-142 (148)
15 PLN00172 ubiquitin conjugating 38.3 20 0.00044 28.6 1.6 31 119-149 74-109 (147)
16 COG3005 TorC Nitrate/TMAO redu 38.1 8.8 0.00019 33.5 -0.5 75 20-100 10-86 (190)
17 PF03931 Skp1_POZ: Skp1 family 36.6 16 0.00036 25.0 0.8 24 123-146 6-29 (62)
18 PF08027 Albumin_I: Albumin I; 35.5 20 0.00043 29.5 1.2 42 90-131 37-79 (120)
19 cd00195 UBCc Ubiquitin-conjuga 34.0 30 0.00065 26.6 1.9 32 119-150 72-109 (141)
20 PF06624 RAMP4: Ribosome assoc 32.7 21 0.00046 25.9 0.8 21 18-38 32-52 (63)
21 PF00179 UQ_con: Ubiquitin-con 30.6 61 0.0013 24.8 3.1 32 119-150 71-108 (140)
22 PTZ00390 ubiquitin-conjugating 28.6 43 0.00093 27.1 2.0 31 120-150 76-111 (152)
23 cd00211 PTS_IIA_fru PTS_IIA, P 26.4 65 0.0014 23.4 2.5 40 66-107 60-99 (136)
24 PF07156 Prenylcys_lyase: Pren 23.5 1.5E+02 0.0033 27.4 4.8 52 136-187 26-82 (368)
25 PHA02633 hypothetical protein; 23.2 90 0.0019 23.1 2.7 27 36-65 30-56 (63)
26 PF10188 Oscp1: Organic solute 22.2 65 0.0014 27.6 2.0 49 112-173 35-86 (173)
27 PRK09854 cmtB putative PTS sys 22.1 1E+02 0.0022 23.6 2.9 72 71-147 74-145 (147)
28 PF06364 DUF1068: Protein of u 22.1 62 0.0014 28.1 1.9 26 20-45 3-28 (176)
29 PF03128 CXCXC: CXCXC repeat; 21.1 48 0.001 17.7 0.7 12 84-95 1-12 (14)
30 smart00674 CENPB Putative DNA- 20.8 59 0.0013 21.7 1.3 22 105-126 45-66 (66)
31 TIGR02894 DNA_bind_RsfA transc 20.5 40 0.00087 28.8 0.5 11 161-171 41-51 (161)
No 1
>PF09037 Sulphotransf: Stf0 sulphotransferase; InterPro: IPR024628 Members of this family are essential for the biosynthesis of sulpholipid-1 in prokaryotes. They adopt a structure that belongs to the sulphotransferase superfamily, consisting of a single domain with a core four-stranded parallel beta-sheet flanked by alpha-helices []. ; PDB: 1TEX_B.
Probab=99.59 E-value=5.9e-17 Score=137.36 Aligned_cols=96 Identities=27% Similarity=0.263 Sum_probs=59.0
Q ss_pred eEEEEeeccCchhHHHhhccCCCcccCccccchhhhhhc-----HHHHHHHHHhhhccccccccccchhh--hhhhhHHH
Q 029195 100 FAILSMQRSGSGWFETLLNNHTNISSNGEVFSVKVRRSN-----ASTIVETLDKIYNLDWFSSASKNECT--AAVGLKWM 172 (197)
Q Consensus 100 FailsmqRSGs~wfetlLnsHpnIsSnGEif~~~~Rr~n-----issi~~tlD~vynlDW~sSAsKNect--aA~GfKWM 172 (197)
|+|+|+|||||+||.++|++|.++...+|.|+..+++.. +++...+.|..+..+|++.+.++.++ .++|||||
T Consensus 2 yii~~t~RSGStlL~~~L~~tg~~G~p~E~F~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ngv~G~KLm 81 (245)
T PF09037_consen 2 YIICSTQRSGSTLLCELLRATGVAGRPQEFFQSPQPREWFAGVGLPSDPGTPDKEDPDEWLDAALARGRTPNGVFGFKLM 81 (245)
T ss_dssp EEEEE-TTSSHHHHHHHHHHCTSS-----TT----HHHHTTT--------------HHHHHHHHHHHTB-TTS-EEEEEE
T ss_pred eEEEeCCCCcHHHHHHHHHhCcCCCCchHhcCCccHHHHHhhcCCcccccccccccHHHHHHHHHHhcCCCCCeEEEEec
Confidence 899999999999999999999999999999997776655 56777889999999999999998886 79999999
Q ss_pred HhhH-HH--------------------HHHhhcCce--EEEecCCCCC
Q 029195 173 LNQV-RL--------------------LYWKCSSIS--FSFQRPLVGS 197 (197)
Q Consensus 173 lnQG-~m--------------------~y~~~rgVs--fLfRrNlLr~ 197 (197)
.||- +. ++|.+ +. ||.|||+|+|
T Consensus 82 ~~q~~~~~~~~~~l~~~~~~d~~~~i~~~~~~--~~~I~L~R~d~l~Q 127 (245)
T PF09037_consen 82 WNQLPLLIRRLAHLYPGRSSDHLRFIEDLFGD--VKFIHLRRRDLLRQ 127 (245)
T ss_dssp GGGHHHHHHHHTTS-TT---SSHHHHHHHHTS---EEEEEE-S-HHHH
T ss_pred HhhhHHHHHHHhhhcccccccHHHHHHHHcCC--eEEEEEEeCCHHHH
Confidence 9982 11 33433 55 9999999975
No 2
>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A.
Probab=97.35 E-value=0.0001 Score=54.14 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=30.4
Q ss_pred eeeEEEEeeccCchhHH-HhhccCCCcccCccccc
Q 029195 98 RYFAILSMQRSGSGWFE-TLLNNHTNISSNGEVFS 131 (197)
Q Consensus 98 r~FailsmqRSGs~wfe-tlLnsHpnIsSnGEif~ 131 (197)
|+..|++++||||+++. .||++||.+..-+|.+.
T Consensus 1 ~pvfI~G~~RSGTTlL~~~Ll~~~~~~~~~~~~~~ 35 (215)
T PF13469_consen 1 RPVFIVGMPRSGTTLLSRRLLSQHPQIWGVHEPQM 35 (215)
T ss_dssp SCEEEECSTTSSHHHHH-HHHCTSTTEECGCHHCC
T ss_pred CeEEEECCCCCcHHHHHHHHHccCCCeeecCCccc
Confidence 46789999999999999 99999999988887774
No 3
>PF00685 Sulfotransfer_1: Sulfotransferase domain; InterPro: IPR000863 This family includes a range of sulphotransferase proteins including flavonyl 3-sulphotransferase, aryl sulphotransferase, alcohol sulphotransferase, oestrogen sulphotransferase and phenol-sulphating phenol sulphotransferase. These enzymes are responsible for the transfer of sulphate groups to specific compounds.; GO: 0008146 sulfotransferase activity; PDB: 3MGC_A 3MGB_A 3MG9_A 1G3M_B 1HY3_B 2QP4_A 3F3Y_C 1EFH_A 1OV4_A 1J99_A ....
Probab=97.29 E-value=8.3e-05 Score=58.22 Aligned_cols=28 Identities=39% Similarity=0.627 Sum_probs=26.3
Q ss_pred eeEEEEeeccCchhHHHhhccCCCcccC
Q 029195 99 YFAILSMQRSGSGWFETLLNNHTNISSN 126 (197)
Q Consensus 99 ~FailsmqRSGs~wfetlLnsHpnIsSn 126 (197)
.+.|+++|||||+|+..+|++||+|.+.
T Consensus 3 ~i~I~g~prSGTt~l~~lL~~h~~~~~~ 30 (267)
T PF00685_consen 3 PIFIVGAPRSGTTWLRELLNSHPDIFSF 30 (267)
T ss_dssp SEEEEESTTSSHHHHHHHHHHHHTTTET
T ss_pred CEEEECCCCCcHHHHHHHHHhCcccccc
Confidence 4679999999999999999999999988
No 4
>COG4424 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.36 E-value=0.014 Score=51.91 Aligned_cols=98 Identities=26% Similarity=0.269 Sum_probs=57.6
Q ss_pred CceeeEEEEeeccCchhHHHhhccCCCcccCccccchhhhhhcHHHHHHH----HHh-----hhccccccccc-c-chhh
Q 029195 96 PVRYFAILSMQRSGSGWFETLLNNHTNISSNGEVFSVKVRRSNASTIVET----LDK-----IYNLDWFSSAS-K-NECT 164 (197)
Q Consensus 96 Pvr~FailsmqRSGs~wfetlLnsHpnIsSnGEif~~~~Rr~nissi~~t----lD~-----vynlDW~sSAs-K-Nect 164 (197)
-+|.|+|++.|||||.|+-.||++--|-=--|+-|- |...|+-++. +|. ....-|+--|- | ..=+
T Consensus 4 ~fr~Ylilt~pRSGStlLckllaatG~sG~p~sff~----rp~~sEWla~~~~pld~g~pea~~~va~f~aai~kgstpn 79 (250)
T COG4424 4 AFRPYLILTTPRSGSTLLCKLLAATGCSGEPQSFFQ----RPQPSEWLAQLLDPLDPGTPEAATPVAWFEAAITKGSTPN 79 (250)
T ss_pred cccceeEecCCCCcchHHHHHHHhcCCCCCchhhhc----CCCHHHHHHhhccccCCCCcccccHHHHHHHHHHcCCCCC
Confidence 368999999999999999999998765433344443 4455544321 111 11122332211 1 1224
Q ss_pred hhhhhHHHHhh-----HHH-----------HHHhhcC-ce--EEEecCCCCC
Q 029195 165 AAVGLKWMLNQ-----VRL-----------LYWKCSS-IS--FSFQRPLVGS 197 (197)
Q Consensus 165 aA~GfKWMlnQ-----G~m-----------~y~~~rg-Vs--fLfRrNlLr~ 197 (197)
..+|.|-|-|| -+. .+-..-| +- ||-|+|.|+|
T Consensus 80 gvfGlkLmrn~d~l~q~lav~lp~~ssD~~r~e~afg~~lfvhl~R~dkv~Q 131 (250)
T COG4424 80 GVFGLKLMRNQDALLQQLAVQLPDRSSDGLRIEDAFGEPLFVHLHRPDKVSQ 131 (250)
T ss_pred ccchhhhccchHHHHHHHHHhCccccchHHHHHHHhCCeeEEEeecchHHHH
Confidence 67899999994 331 2223344 22 7888887764
No 5
>KOG3988 consensus Protein-tyrosine sulfotransferase TPST1/TPST2 [Posttranslational modification, protein turnover, chaperones]
Probab=85.60 E-value=0.44 Score=44.66 Aligned_cols=40 Identities=25% Similarity=0.446 Sum_probs=32.1
Q ss_pred ccCCCccccCCceeeEEEEeeccCchhHHHhhccCCCcccCccccc
Q 029195 86 TYSRAECACNPVRYFAILSMQRSGSGWFETLLNNHTNISSNGEVFS 131 (197)
Q Consensus 86 tysR~ECacnPvr~FailsmqRSGs~wfetlLnsHpnIsSnGEif~ 131 (197)
.|+|.+ | +--|=..|||||+..+.+|+.||.|-..||-..
T Consensus 65 ~y~~~m----p--lIFiGGVPRSGTTLMRAmLDAHPdVRCGeETrv 104 (378)
T KOG3988|consen 65 GYNRTM----P--LIFIGGVPRSGTTLMRAMLDAHPDVRCGEETRV 104 (378)
T ss_pred hhcccC----c--eEEEcCCCCCchHHHHHHHhcCCCcccCcccee
Confidence 466654 2 334568999999999999999999999999754
No 6
>KOG3703 consensus Heparan sulfate N-deacetylase/N-sulfotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=58.95 E-value=7 Score=39.89 Aligned_cols=36 Identities=31% Similarity=0.474 Sum_probs=32.5
Q ss_pred cccCCceeeEEEEeeccCchhHHHhhccCCCcccCc
Q 029195 92 CACNPVRYFAILSMQRSGSGWFETLLNNHTNISSNG 127 (197)
Q Consensus 92 CacnPvr~FailsmqRSGs~wfetlLnsHpnIsSnG 127 (197)
=.|.-.-.|.|+.-|++||+-+-..|.-||+|+||-
T Consensus 590 ktCd~lPkfLiIGPQKTGtTAly~FLsmHp~i~sn~ 625 (873)
T KOG3703|consen 590 KTCDRLPKFLIIGPQKTGTTALYLFLSMHPSISSNT 625 (873)
T ss_pred cCcccccceEEEcCcccchhHHHHHHhhCcchhcCC
Confidence 356667789999999999999999999999999995
No 7
>PF09127 Leuk-A4-hydro_C: Leukotriene A4 hydrolase, C-terminal; InterPro: IPR015211 This C-terminal domain is found in peptidases belonging to MEROPS peptidase family M1, particularly: aminopeptidase-1 of Caenorhabditis elegans, aminopeptidase O, aminopeptidase B and the bifunctional leukotriene A4 hydrolase/aminopeptidase. The domain adopts a structure consisting of two layers of parallel alpha-helices, five in the inner layer and four in the outer, arranged in an antiparallel manner, with perpendicular loops containing short helical segments on top. It is required for the formation of a deep cleft harbouring the catalytic Zn2+ site in leukotriene A4 hydrolase []. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0019370 leukotriene biosynthetic process; PDB: 3FUJ_A 3FU3_A 3FTX_A 3FTS_A 3B7R_L 2VJ8_A 3FTW_A 3FUF_A 3FU0_A 3CHO_A ....
Probab=57.83 E-value=8.3 Score=30.78 Aligned_cols=41 Identities=27% Similarity=0.444 Sum_probs=24.2
Q ss_pred HHHHHHHhhhccc----------cccccccchhhhh--hhhHHHHhhHHHHHH
Q 029195 141 TIVETLDKIYNLD----------WFSSASKNECTAA--VGLKWMLNQVRLLYW 181 (197)
Q Consensus 141 si~~tlD~vynlD----------W~sSAsKNectaA--~GfKWMlnQG~m~y~ 181 (197)
+.++.||++|++. |+.-|-||....+ .--+|+..||-|.|.
T Consensus 52 ~~l~~Ld~~y~l~~s~NaEI~~rW~~l~i~~~~~~~~~~v~~fL~~~GRmKfv 104 (143)
T PF09127_consen 52 EKLQALDKVYKLSNSKNAEIRFRWLRLAIKAKYEPALPQVEEFLGSQGRMKFV 104 (143)
T ss_dssp HHHHHHHHHHCHCT-SSHHHHHHHHHHHHHTT-GGGHHHHHHHHHHS--HHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCChhH
Confidence 5678899999872 5444444444322 335778888888664
No 8
>KOG1584 consensus Sulfotransferase [General function prediction only]
Probab=56.77 E-value=7.4 Score=35.68 Aligned_cols=18 Identities=28% Similarity=0.660 Sum_probs=15.8
Q ss_pred eEEEEeeccCchhHHHhh
Q 029195 100 FAILSMQRSGSGWFETLL 117 (197)
Q Consensus 100 FailsmqRSGs~wfetlL 117 (197)
.+|.|-|+|||+|+.+|.
T Consensus 42 iiiaTyPKsGTTWlkel~ 59 (297)
T KOG1584|consen 42 VIIATYPKSGTTWLQELT 59 (297)
T ss_pred EEEEecCCCchHHHHHHH
Confidence 689999999999998763
No 9
>PLN02164 sulfotransferase
Probab=51.41 E-value=8.4 Score=35.24 Aligned_cols=18 Identities=28% Similarity=0.761 Sum_probs=16.1
Q ss_pred eEEEEeeccCchhHHHhh
Q 029195 100 FAILSMQRSGSGWFETLL 117 (197)
Q Consensus 100 FailsmqRSGs~wfetlL 117 (197)
-+|.|.|+|||+|+.+++
T Consensus 82 V~laSyPKsGTTWlq~iv 99 (346)
T PLN02164 82 FLVCSYPKTGTTWLKALT 99 (346)
T ss_pred EEEEcCCCchhHHHHHHH
Confidence 478999999999999985
No 10
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.58 E-value=12 Score=31.59 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=18.5
Q ss_pred cCCCcccCccccch-----hhhhhcHHHHH
Q 029195 119 NHTNISSNGEVFSV-----KVRRSNASTIV 143 (197)
Q Consensus 119 sHpnIsSnGEif~~-----~~Rr~nissi~ 143 (197)
=||||.++|+|.-. +....+|++++
T Consensus 74 yHPNI~~~G~IclDILk~~WsPAl~i~~Vl 103 (148)
T KOG0417|consen 74 YHPNIDSNGRICLDILKDQWSPALTISKVL 103 (148)
T ss_pred ccCCcCccccchHHhhhccCChhhHHHHHH
Confidence 49999999999754 34666666654
No 11
>KOG3491 consensus Predicted membrane protein [Function unknown]
Probab=47.58 E-value=15 Score=27.33 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=21.4
Q ss_pred cCCCCCchHHHHHHHHHHHhheeeE
Q 029195 16 KSPKKSPLVLRMLVLVFVMVCGVYI 40 (197)
Q Consensus 16 K~~Kk~pl~lr~vvl~~~~~cGvyi 40 (197)
|+-||.|...+++-||+.+|||--+
T Consensus 30 ~~e~kypvgPwLlglFvFVVcGSa~ 54 (65)
T KOG3491|consen 30 KKEKKYPVGPWLLGLFVFVVCGSAL 54 (65)
T ss_pred CccccCCcchHHHHHHHHHhhcHHH
Confidence 6778899999999999999999544
No 12
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.05 E-value=12 Score=33.04 Aligned_cols=14 Identities=36% Similarity=0.601 Sum_probs=12.0
Q ss_pred cCCCcccCccccch
Q 029195 119 NHTNISSNGEVFSV 132 (197)
Q Consensus 119 sHpnIsSnGEif~~ 132 (197)
=||||-+||||-..
T Consensus 83 FHPNVaaNGEICVN 96 (223)
T KOG0423|consen 83 FHPNVAANGEICVN 96 (223)
T ss_pred ccCCcccCceehhh
Confidence 39999999999754
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=38.60 E-value=28 Score=26.87 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=26.5
Q ss_pred cCCCcccCccc----cc--hhhhhhcHHHHHHHHHhhhcccccccc
Q 029195 119 NHTNISSNGEV----FS--VKVRRSNASTIVETLDKIYNLDWFSSA 158 (197)
Q Consensus 119 sHpnIsSnGEi----f~--~~~Rr~nissi~~tlD~vynlDW~sSA 158 (197)
-||||..+|.+ +. .+....++++|++.+-.+..-.-..+.
T Consensus 72 ~Hp~i~~~G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~ 117 (145)
T smart00212 72 YHPNVDSSGEICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSP 117 (145)
T ss_pred eEeeECCCCCEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCc
Confidence 49999999987 33 455667788887776655543333343
No 14
>PRK09913 putative fructose-like phosphotransferase system subunit EIIA; Provisional
Probab=38.52 E-value=51 Score=25.07 Aligned_cols=80 Identities=6% Similarity=0.082 Sum_probs=45.6
Q ss_pred cCCCCCCCCCCCCCceeCCCCCccCCCccccCCceeeEEEEeeccCchhHHHhhccCCCcccCccccchhhhhhcHHHHH
Q 029195 64 RPCPVPNIEPWEIPYVHYPKPKTYSRAECACNPVRYFAILSMQRSGSGWFETLLNNHTNISSNGEVFSVKVRRSNASTIV 143 (197)
Q Consensus 64 ~~c~~~~i~~~e~~yvHyP~P~tysR~ECacnPvr~FailsmqRSGs~wfetlLnsHpnIsSnGEif~~~~Rr~nissi~ 143 (197)
.+|....+....+-+++.++|-.|+... -.||+.+..+.++.+.+.-.-.+|..=-.+.++.+....... .+..++.
T Consensus 63 PH~~~~~v~~~~i~i~~l~~pi~~~~~~--~~~V~~i~~l~~~~~~~~~~l~~l~~l~~~l~~~~~~~~L~~-~~~~ei~ 139 (148)
T PRK09913 63 PHGKSACVKQPFVLFARKAQAIDWQASD--GEDVNCWICLGVPQSGEEDQVKIIGTLCRKIIHQDFIHQLKQ-GDTDQVL 139 (148)
T ss_pred CcCCchhcCCCEEEEEEeCCCcCCCCCC--CCcccEEEEEEeCCcCcHHHHHHHHHHHHHHcCHHHHHHHHc-CCHHHHH
Confidence 3454444555566689999999997542 379998888888865444333344443444444443333322 3444444
Q ss_pred HHH
Q 029195 144 ETL 146 (197)
Q Consensus 144 ~tl 146 (197)
+-|
T Consensus 140 ~~l 142 (148)
T PRK09913 140 ALL 142 (148)
T ss_pred HHH
Confidence 433
No 15
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=38.29 E-value=20 Score=28.61 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=20.2
Q ss_pred cCCCcccCccccc-----hhhhhhcHHHHHHHHHhh
Q 029195 119 NHTNISSNGEVFS-----VKVRRSNASTIVETLDKI 149 (197)
Q Consensus 119 sHpnIsSnGEif~-----~~~Rr~nissi~~tlD~v 149 (197)
-||||.++|.+=. .+.--.++++|+..+-.+
T Consensus 74 ~HPNv~~~G~iCl~il~~~W~p~~ti~~il~~i~~l 109 (147)
T PLN00172 74 YHPNINSNGSICLDILRDQWSPALTVSKVLLSISSL 109 (147)
T ss_pred ccceECCCCEEEcccCcCCCCCcCcHHHHHHHHHHH
Confidence 4999999998843 234455666666555433
No 16
>COG3005 TorC Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit [Energy production and conversion]
Probab=38.12 E-value=8.8 Score=33.48 Aligned_cols=75 Identities=19% Similarity=0.161 Sum_probs=45.6
Q ss_pred CCchHHHHHHHHHHHhheeeEeeeEeeccccccccccceeeEeecCCCCCCCCCCCC-CceeCCCCCccCCCccc-cCCc
Q 029195 20 KSPLVLRMLVLVFVMVCGVYICSVCVKQISARTKSEFLNVQVIERPCPVPNIEPWEI-PYVHYPKPKTYSRAECA-CNPV 97 (197)
Q Consensus 20 k~pl~lr~vvl~~~~~cGvyic~i~~kqi~~~~~~~~~~~~v~e~~c~~~~i~~~e~-~yvHyP~P~tysR~ECa-cnPv 97 (197)
.+|..+-+.+|.++.+.|-|+.-..++-+.- ..+-+-+.-.|...+.+..|+ .+|||-.|+. =|.+|+ |.=+
T Consensus 10 ~~~~~~a~~~l~~~gfv~G~~~w~~~~~~~~-----~tnt~eFCvsCH~m~~vy~E~~~tvH~~n~sG-vrA~C~dCHiP 83 (190)
T COG3005 10 RSPSRWALGTLLLIGFVVGILFWGGFNVGLE-----LTNTEEFCVSCHEMNRVYEEYMGTVHFSNRSG-VRATCSDCHIP 83 (190)
T ss_pred cchHHHHHHHHHHHHHHHhheeecchhHHHH-----hcCCcHHHHHhhhhHHHHHHHhcccCcccCCc-ccccCCCcccC
Confidence 3455555546666666666665555544432 223334567787665444444 4999999998 899996 6655
Q ss_pred eee
Q 029195 98 RYF 100 (197)
Q Consensus 98 r~F 100 (197)
+-|
T Consensus 84 he~ 86 (190)
T COG3005 84 HEF 86 (190)
T ss_pred cch
Confidence 544
No 17
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=36.57 E-value=16 Score=24.98 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=20.4
Q ss_pred cccCccccchhhhhhcHHHHHHHH
Q 029195 123 ISSNGEVFSVKVRRSNASTIVETL 146 (197)
Q Consensus 123 IsSnGEif~~~~Rr~nissi~~tl 146 (197)
+||+|+.|.+..+-+..|..++.|
T Consensus 6 ~SsDg~~f~V~~~~a~~S~~i~~m 29 (62)
T PF03931_consen 6 VSSDGQEFEVSREAAKQSKTIKNM 29 (62)
T ss_dssp EETTSEEEEEEHHHHTTSHHHHHH
T ss_pred EcCCCCEEEeeHHHHHHhHHHHHH
Confidence 689999999999888888877654
No 18
>PF08027 Albumin_I: Albumin I; InterPro: IPR012512 The albumin I protein, a hormone-like peptide, stimulates kinase activity upon binding a membrane bound 43 kDa receptor. The structure of this region reveals a knottin like fold, comprise of three beta strands [].; GO: 0045735 nutrient reservoir activity, 0009405 pathogenesis; PDB: 1P8B_A 1JU8_A.
Probab=35.53 E-value=20 Score=29.47 Aligned_cols=42 Identities=21% Similarity=0.497 Sum_probs=14.3
Q ss_pred CccccCCceeeEEEEeeccCchhHHHhhccCCCcc-cCccccc
Q 029195 90 AECACNPVRYFAILSMQRSGSGWFETLLNNHTNIS-SNGEVFS 131 (197)
Q Consensus 90 ~ECacnPvr~FailsmqRSGs~wfetlLnsHpnIs-SnGEif~ 131 (197)
..|.|-|+-.|+=.=..++|..=+....+.|||.. ||.|-..
T Consensus 37 s~CrCiP~~l~~G~C~~p~~~~s~~k~v~ehpnLCqsh~dC~K 79 (120)
T PF08027_consen 37 SDCRCIPWGLFVGFCIYPSGLSSVAKMVEEHPNLCQSHDDCIK 79 (120)
T ss_dssp TTSEEEE-SSS-EEEE-TT------------------------
T ss_pred CCeeEEEeeecceEEECCCchHHHHHHHhhcchhhccHHHHHh
Confidence 57999999999988888898777888899999974 5555443
No 19
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=34.03 E-value=30 Score=26.62 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=20.1
Q ss_pred cCCCcccCccccch------hhhhhcHHHHHHHHHhhh
Q 029195 119 NHTNISSNGEVFSV------KVRRSNASTIVETLDKIY 150 (197)
Q Consensus 119 sHpnIsSnGEif~~------~~Rr~nissi~~tlD~vy 150 (197)
.||||.++|++=.. +.-..++.+|+..+-...
T Consensus 72 ~HpnV~~~G~icl~~l~~~~W~p~~~l~~il~~i~~~l 109 (141)
T cd00195 72 YHPNVDENGKICLSILKTHGWSPAYTLRTVLLSLQSLL 109 (141)
T ss_pred ccCCCCCCCCCchhhcCCCCcCCcCcHHHHHHHHHHHH
Confidence 49999999988332 333345777765554443
No 20
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=32.72 E-value=21 Score=25.94 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=17.1
Q ss_pred CCCCchHHHHHHHHHHHhhee
Q 029195 18 PKKSPLVLRMLVLVFVMVCGV 38 (197)
Q Consensus 18 ~Kk~pl~lr~vvl~~~~~cGv 38 (197)
-+|+|.-.+++.|++.+|||=
T Consensus 32 ~~k~pVgp~~L~l~iFVV~Gs 52 (63)
T PF06624_consen 32 EKKYPVGPWLLGLFIFVVCGS 52 (63)
T ss_pred cccCCcCHHHHhhhheeeEcH
Confidence 468999888888888888884
No 21
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=30.56 E-value=61 Score=24.81 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=18.7
Q ss_pred cCCCcccCccccch------hhhhhcHHHHHHHHHhhh
Q 029195 119 NHTNISSNGEVFSV------KVRRSNASTIVETLDKIY 150 (197)
Q Consensus 119 sHpnIsSnGEif~~------~~Rr~nissi~~tlD~vy 150 (197)
-||||..+|++=-. +..-.++++|+..+-.+.
T Consensus 71 ~HPni~~~G~icl~~l~~~~W~p~~~i~~il~~i~~ll 108 (140)
T PF00179_consen 71 FHPNIDENGRICLDILNPESWSPSYTIESILLSIQSLL 108 (140)
T ss_dssp SBTTB-TTSBBGHGGGTTTTC-TTSHHHHHHHHHHHHH
T ss_pred ccccccccccchhhhhhcccCCcccccccHHHHHHHHH
Confidence 49999999987431 333445666655554444
No 22
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=28.58 E-value=43 Score=27.06 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=19.6
Q ss_pred CCCcccCccccch-----hhhhhcHHHHHHHHHhhh
Q 029195 120 HTNISSNGEVFSV-----KVRRSNASTIVETLDKIY 150 (197)
Q Consensus 120 HpnIsSnGEif~~-----~~Rr~nissi~~tlD~vy 150 (197)
||||..+|++=.. +.--.++++|+..+-.+.
T Consensus 76 HPNV~~~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll 111 (152)
T PTZ00390 76 HPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALL 111 (152)
T ss_pred eceECCCCeEECccCcccCCCCCcHHHHHHHHHHHH
Confidence 9999999998432 233456666655544433
No 23
>cd00211 PTS_IIA_fru PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=26.40 E-value=65 Score=23.41 Aligned_cols=40 Identities=13% Similarity=0.257 Sum_probs=30.7
Q ss_pred CCCCCCCCCCCCceeCCCCCccCCCccccCCceeeEEEEeec
Q 029195 66 CPVPNIEPWEIPYVHYPKPKTYSRAECACNPVRYFAILSMQR 107 (197)
Q Consensus 66 c~~~~i~~~e~~yvHyP~P~tysR~ECacnPvr~FailsmqR 107 (197)
|....+....+-.++-++|-.|...+ -.||+....++.+.
T Consensus 60 ~~~~~~~~~~i~v~~l~~~i~~~~~~--~~~v~~v~~l~~~~ 99 (136)
T cd00211 60 AKSEAVKKPGIAVLRLKEPVDFGSLD--GQPVHLIFLLAAPD 99 (136)
T ss_pred CCchhhcccEEEEEEeCCCccCCCCC--CCceeEEEEEEcCC
Confidence 43333555566788999999998765 68999999999988
No 24
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=23.54 E-value=1.5e+02 Score=27.37 Aligned_cols=52 Identities=25% Similarity=0.280 Sum_probs=40.2
Q ss_pred hhcHHHHHHHHHhhhcc--ccccccccchhhhhhh---hHHHHhhHHHHHHhhcCce
Q 029195 136 RSNASTIVETLDKIYNL--DWFSSASKNECTAAVG---LKWMLNQVRLLYWKCSSIS 187 (197)
Q Consensus 136 r~nissi~~tlD~vynl--DW~sSAsKNectaA~G---fKWMlnQG~m~y~~~rgVs 187 (197)
+.-++++++.+.++|++ +-+.=.+-.+-..|+| |.=|+++-..||+++.|++
T Consensus 26 ~~~v~~~l~kFl~iY~~q~~~~~F~sv~~l~~~lg~~~~~~~t~~t~~e~L~~~gi~ 82 (368)
T PF07156_consen 26 QNLVKSTLDKFLKIYELQEPGFPFSSVEELLSALGGDDFLNLTKVTGEEYLKENGIS 82 (368)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCcCCHHHHHHHhCChHHHHHHHHHHHHHHHHCCCC
Confidence 55578899999999985 2222233467888999 7778988888999999988
No 25
>PHA02633 hypothetical protein; Provisional
Probab=23.25 E-value=90 Score=23.09 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=15.0
Q ss_pred heeeEeeeEeeccccccccccceeeEeecC
Q 029195 36 CGVYICSVCVKQISARTKSEFLNVQVIERP 65 (197)
Q Consensus 36 cGvyic~i~~kqi~~~~~~~~~~~~v~e~~ 65 (197)
-|+|||.+.=.+. .....++++|.++.
T Consensus 30 SGiYiC~~rn~t~---c~~~si~l~V~~~~ 56 (63)
T PHA02633 30 SGIYMCITKNETY---SDMMKFDLCICLRI 56 (63)
T ss_pred CcEEEEEEcCCCe---eEEEEEEEEEeecc
Confidence 5999999863332 23333445555443
No 26
>PF10188 Oscp1: Organic solute transport protein 1; InterPro: IPR019332 Organic solute carrier protein 1, or Oscp1, is a family of proteins conserved from plants to humans. It is called organic solute transport protein or oxido-red-nitro domain-containing protein 1, however no reference could be find to confirm the function of the protein.
Probab=22.16 E-value=65 Score=27.57 Aligned_cols=49 Identities=18% Similarity=0.437 Sum_probs=31.7
Q ss_pred hHHHhhccCCCcccCccccchhhhhhcHHHH---HHHHHhhhccccccccccchhhhhhhhHHHH
Q 029195 112 WFETLLNNHTNISSNGEVFSVKVRRSNASTI---VETLDKIYNLDWFSSASKNECTAAVGLKWML 173 (197)
Q Consensus 112 wfetlLnsHpnIsSnGEif~~~~Rr~nissi---~~tlD~vynlDW~sSAsKNectaA~GfKWMl 173 (197)
++++|..-+| +.|...+....+|-+.-|.. ...|||+|+| ...||||=+
T Consensus 35 fl~eLfkPq~-lys~~~~r~~f~~lah~SIMRLn~~SMdKL~DL------------M~M~~KyQl 86 (173)
T PF10188_consen 35 FLDELFKPQP-LYSKKALRTVFEKLAHSSIMRLNENSMDKLFDL------------MTMAFKYQL 86 (173)
T ss_pred HHHHHcCCcc-ccCHHHHHHHHHHHHhhhhhhcCHHHHHHHHHH------------HHHHHHHHH
Confidence 4566666666 66666777777765543322 1679999998 466777744
No 27
>PRK09854 cmtB putative PTS system mannitol-specific transporter subunit IIA; Provisional
Probab=22.11 E-value=1e+02 Score=23.59 Aligned_cols=72 Identities=8% Similarity=0.144 Sum_probs=47.0
Q ss_pred CCCCCCCceeCCCCCccCCCccccCCceeeEEEEeeccCchhHHHhhccCCCcccCccccchhhhhhcHHHHHHHHH
Q 029195 71 IEPWEIPYVHYPKPKTYSRAECACNPVRYFAILSMQRSGSGWFETLLNNHTNISSNGEVFSVKVRRSNASTIVETLD 147 (197)
Q Consensus 71 i~~~e~~yvHyP~P~tysR~ECacnPvr~FailsmqRSGs~wfetlLnsHpnIsSnGEif~~~~Rr~nissi~~tlD 147 (197)
+...-+-.+..++|-.|.-++ .||+.+..++......| -.+|..=..+..+.|......+-.+..++.+.+.
T Consensus 74 v~~~~i~v~~~~~~I~~~~~~---~~V~lvf~l~~~~~~~~--l~il~~l~~~~~~~~~~~~l~~~~~~~e~~~~l~ 145 (147)
T PRK09854 74 ALKTGMSLTLLEQGVYFPGND---EPIKLLIGLSAADADSH--IGAIQALSELLCEEEILEQLLTASSEKQLADIIS 145 (147)
T ss_pred ccccceEEEEeCCCEEcCCCC---CcEEEEEEEecCCcHHH--HHHHHHHHHHHcCHHHHHHHHhCCCHHHHHHHHh
Confidence 345556688899999996444 58998888877555444 3456655666666666655555566666655553
No 28
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=22.10 E-value=62 Score=28.15 Aligned_cols=26 Identities=23% Similarity=0.453 Sum_probs=22.3
Q ss_pred CCchHHHHHHHHHHHhheeeEeeeEe
Q 029195 20 KSPLVLRMLVLVFVMVCGVYICSVCV 45 (197)
Q Consensus 20 k~pl~lr~vvl~~~~~cGvyic~i~~ 45 (197)
++|-++|.+++++++.+.+||+-=-+
T Consensus 3 ~s~~~lr~~l~llal~~a~yivGP~L 28 (176)
T PF06364_consen 3 PSPAALRVVLVLLALCLAGYIVGPPL 28 (176)
T ss_pred CChhHHHHHHHHHHHHHHhheeCchH
Confidence 57889999999999999999986443
No 29
>PF03128 CXCXC: CXCXC repeat; InterPro: IPR004153 This repeat contains the conserved pattern CXCXC where X can be any amino acid. The repeat is found in up to five copies in Vascular endothelial growth factor C []. In the salivary glands of the dipteran Chironomus tentans, a specific messenger ribonucleoprotein (mRNP) particle, the Balbiani ring (BR) granule, can be visualized during its assembly on the gene and during its nucleocytoplasmic transport. This repeat is found over 70 copies in the balbiani ring protein 3 (Q03376 from SWISSPROT). It is also found in some silk proteins [].
Probab=21.14 E-value=48 Score=17.71 Aligned_cols=12 Identities=25% Similarity=1.030 Sum_probs=9.6
Q ss_pred CCccCCCccccC
Q 029195 84 PKTYSRAECACN 95 (197)
Q Consensus 84 P~tysR~ECacn 95 (197)
|+.|+.+.|.|.
T Consensus 1 ~q~wn~~tC~C~ 12 (14)
T PF03128_consen 1 PQVWNDDTCQCE 12 (14)
T ss_pred CceecCCCcCcc
Confidence 678888888884
No 30
>smart00674 CENPB Putative DNA-binding domain in centromere protein B, mouse jerky and transposases.
Probab=20.82 E-value=59 Score=21.71 Aligned_cols=22 Identities=14% Similarity=0.475 Sum_probs=18.1
Q ss_pred eeccCchhHHHhhccCCCcccC
Q 029195 105 MQRSGSGWFETLLNNHTNISSN 126 (197)
Q Consensus 105 mqRSGs~wfetlLnsHpnIsSn 126 (197)
..+.|.||+..+.+.||-+.++
T Consensus 45 ~f~~s~~Wl~rF~~Rh~~~~~~ 66 (66)
T smart00674 45 NFKASNGWLTRFKKRHNIVKRK 66 (66)
T ss_pred CCCCCHHHHHHHHHHcCCccCC
Confidence 4568999999999999977653
No 31
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=20.47 E-value=40 Score=28.76 Aligned_cols=11 Identities=45% Similarity=1.048 Sum_probs=9.8
Q ss_pred chhhhhhhhHH
Q 029195 161 NECTAAVGLKW 171 (197)
Q Consensus 161 NectaA~GfKW 171 (197)
|+=+||+||.|
T Consensus 41 ~RTsAACGFRW 51 (161)
T TIGR02894 41 NRTAAACGFRW 51 (161)
T ss_pred cccHHHhcchH
Confidence 67789999999
Done!