BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029196
         (197 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1FXK|C Chain C, Crystal Structure Of Archaeal Prefoldin (gimc)
          Length = 133

 Score = 32.7 bits (73), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 11/104 (10%)

Query: 51  SALAFLQERLQQYKLVEMKLLAQQRD-LQAKIPDIEKCLDIVATLQAKKEGGEALTADFE 109
           +ALA +  +L  Y+  +++L+ QQ + ++A I ++E     ++ +Q K +G E L     
Sbjct: 1   AALAEIVAQLNIYQ-SQVELIQQQMEAVRATISELEILEKTLSDIQGK-DGSETLVP--- 55

Query: 110 VSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEKNLENAKASLE 153
           V  G F +A ++DT  V + +GA V +     +KN E+A  S++
Sbjct: 56  VGAGSFIKAELKDTSEVIMSVGAGVAI-----KKNFEDAMESIK 94


>pdb|2BTV|A Chain A, Atomic Model For Bluetongue Virus (Btv) Core
 pdb|2BTV|B Chain B, Atomic Model For Bluetongue Virus (Btv) Core
          Length = 901

 Score = 27.7 bits (60), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 12/43 (27%), Positives = 26/43 (60%)

Query: 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK 98
          LQE +Q+ + V+   +   R++   +PD+++ LD +  L A++
Sbjct: 36 LQEIMQKVRQVQADYMTATREVDFTVPDVQQILDDIKALAAEQ 78


>pdb|3FBT|A Chain A, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
           Dehydrogenase Fusion Protein From Clostridium
           Acetobutylicum
 pdb|3FBT|B Chain B, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
           Dehydrogenase Fusion Protein From Clostridium
           Acetobutylicum
 pdb|3FBT|C Chain C, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
           Dehydrogenase Fusion Protein From Clostridium
           Acetobutylicum
 pdb|3FBT|D Chain D, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
           Dehydrogenase Fusion Protein From Clostridium
           Acetobutylicum
          Length = 282

 Score = 27.3 bits (59), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 91  VATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133
           V TL+  +EG      D+     + S+ R+E  +++C+ LG+ 
Sbjct: 89  VNTLKFSREGISGFNTDYIGFGKMLSKFRVEIKNNICVVLGSG 131


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,926,564
Number of Sequences: 62578
Number of extensions: 129664
Number of successful extensions: 379
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 367
Number of HSP's gapped (non-prelim): 22
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)