BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029196
(197 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P57741|PFD3_ARATH Probable prefoldin subunit 3 OS=Arabidopsis thaliana GN=At5g49510
PE=2 SV=1
Length = 195
Score = 293 bits (751), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 141/176 (80%), Positives = 157/176 (89%), Gaps = 6/176 (3%)
Query: 24 TERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPD 83
TERRGIPAA+F++DV+T+LSQ LD NSALAF QERLQQYK+VEMKLLAQQRDLQAKIPD
Sbjct: 14 TERRGIPAAKFIQDVETYLSQSGLDPNSALAFHQERLQQYKVVEMKLLAQQRDLQAKIPD 73
Query: 84 IEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE- 142
IEKCL++VATL+AKK GEAL ADFEVSEGI+SRA IEDTDSVCLWLGANVMLEYSC+E
Sbjct: 74 IEKCLEVVATLEAKKGTGEALLADFEVSEGIYSRACIEDTDSVCLWLGANVMLEYSCEEA 133
Query: 143 -----KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQAAAAA 193
NLENAKASLEVL+ADLQFLRDQVT+TQVT+ARVYNWDVHQRR++Q A
Sbjct: 134 SALLKNNLENAKASLEVLVADLQFLRDQVTVTQVTIARVYNWDVHQRRVKQVTPTA 189
>sp|P61759|PFD3_MOUSE Prefoldin subunit 3 OS=Mus musculus GN=Vbp1 PE=2 SV=2
Length = 196
Score = 151 bits (381), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 113/183 (61%), Gaps = 7/183 (3%)
Query: 9 ASSSSEIATAAASPTTERRGIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVE 67
A + TAA + GIP A FVEDV +F+ Q + ++ L L E+ Q+YK +E
Sbjct: 4 AKDGCGLETAAGNGRRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFME 63
Query: 68 MKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVC 127
+ L ++R L+ +IP+I++ L+I+ +Q KKE ++ F +++ ++ +A + TD VC
Sbjct: 64 LNLAQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKASVPPTDKVC 123
Query: 128 LWLGANVMLEYSCD------EKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDV 181
LWLGANVMLEY D EKNL A +L+ L DL FLRDQ T T+V +ARVYNWDV
Sbjct: 124 LWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDV 183
Query: 182 HQR 184
+R
Sbjct: 184 KRR 186
>sp|Q5RCG9|PFD3_PONAB Prefoldin subunit 3 OS=Pongo abelii GN=VBP1 PE=2 SV=1
Length = 197
Score = 150 bits (378), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 117/191 (61%), Gaps = 15/191 (7%)
Query: 4 ASAETASSSSEIATAAASPTTERR---GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQER 59
A+ + + E+AT RR GIP A FVEDV +F+ Q + ++ L L E+
Sbjct: 2 AAVKDSCGKGEMATGNG-----RRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQ 56
Query: 60 LQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRAR 119
Q+YK +E+ L ++R L+ +IP+I++ L+I+ +Q KKE ++ F +++ ++ +A
Sbjct: 57 YQKYKFMELNLAQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKAS 116
Query: 120 IEDTDSVCLWLGANVMLEYSCD------EKNLENAKASLEVLIADLQFLRDQVTITQVTV 173
+ TD VCLWLGANVMLEY D EKNL A +L+ L DL FLRDQ T T+V +
Sbjct: 117 VPPTDKVCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNM 176
Query: 174 ARVYNWDVHQR 184
ARVYNWDV +R
Sbjct: 177 ARVYNWDVKRR 187
>sp|P61758|PFD3_HUMAN Prefoldin subunit 3 OS=Homo sapiens GN=VBP1 PE=1 SV=3
Length = 197
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 15/191 (7%)
Query: 4 ASAETASSSSEIATAAASPTTERR---GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQER 59
A+ + + E+AT RR GIP A FVEDV +F+ Q + ++ L L E+
Sbjct: 2 AAVKDSCGKGEMATGNG-----RRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQ 56
Query: 60 LQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRAR 119
Q+YK +E+ L ++R L+ +IP+I++ L+I+ +Q KKE ++ F +++ ++ +A
Sbjct: 57 YQKYKFMELNLAQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKAS 116
Query: 120 IEDTDSVCLWLGANVMLEYSCD------EKNLENAKASLEVLIADLQFLRDQVTITQVTV 173
+ TD +CLWLGANVMLEY D EKNL A +L+ L DL FLRDQ T T+V +
Sbjct: 117 VPPTDKMCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNM 176
Query: 174 ARVYNWDVHQR 184
ARVYNWDV +R
Sbjct: 177 ARVYNWDVKRR 187
>sp|Q2TBX2|PFD3_BOVIN Prefoldin subunit 3 OS=Bos taurus GN=VBP1 PE=2 SV=1
Length = 197
Score = 144 bits (363), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 79/186 (42%), Positives = 111/186 (59%), Gaps = 10/186 (5%)
Query: 9 ASSSSEIATAAASPTTERR---GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYK 64
A+S + RR GIP A FVEDV +F+ Q + + L L E+ Q+YK
Sbjct: 2 AASKDGCGVGEVAAGNGRRLHLGIPEAVFVEDVDSFMKQPGNETADIVLKKLDEQYQKYK 61
Query: 65 LVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTD 124
+E+ L ++R L+ +IP+I++ L+I+ Q KKE +L F +++ ++ +A + TD
Sbjct: 62 FMELNLAQKKRRLKGQIPEIKQTLEILKYKQKKKESTSSLETRFLLADNLYCKASVPPTD 121
Query: 125 SVCLWLGANVMLEYSCD------EKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN 178
VCLWLGANVMLEY D EKNL A +L+ L DL FLRDQ T T+V +ARVYN
Sbjct: 122 KVCLWLGANVMLEYDIDEAQALLEKNLLTATKNLDSLEEDLDFLRDQFTTTEVNMARVYN 181
Query: 179 WDVHQR 184
WDV +R
Sbjct: 182 WDVKRR 187
>sp|O18054|PFD3_CAEEL Probable prefoldin subunit 3 OS=Caenorhabditis elegans GN=pfd-3
PE=3 SV=1
Length = 185
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 108/175 (61%), Gaps = 10/175 (5%)
Query: 27 RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
RGIP ++ +EDV+++L++ L + A L+E+ +YK VE +LAQ+ + KIP+ E
Sbjct: 11 RGIPKSELIEDVESWLTKEKLSIEEAEVVLREKYGKYKYVESSMLAQKVRMSEKIPEFEN 70
Query: 87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCD----- 141
L I+ TL AK+ E+ F +S+ ++++A ++ + V +WLGANVM+EY +
Sbjct: 71 SLSIIDTLIAKRAADESFETTFLLSDDVYTKATVQKPEKVSIWLGANVMVEYDLENARKL 130
Query: 142 -EKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQAAAAAAN 195
+KN + + ++ L +L +++DQ+T T+V ++ + N+ V++RR AA A N
Sbjct: 131 LDKNRGSVQKVVDELTNELSYIKDQITTTEVNMSHIVNFGVNKRR----AALAVN 181
>sp|Q54LS2|PFD3_DICDI Probable prefoldin subunit 3 OS=Dictyostelium discoideum GN=pfdn3
PE=3 SV=1
Length = 195
Score = 117 bits (293), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 95/164 (57%), Gaps = 10/164 (6%)
Query: 28 GIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKC 87
IP F+ +V+ F+ D DV + LQE Q+YK E KL L + +++
Sbjct: 23 NIPMVTFISNVEEFVK--DKDVENVFKQLQEAYQKYKFFESKLSNNISMLTQRSKQLQES 80
Query: 88 LDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE----- 142
LDIV ++ K E+ + +E+SEG++S A++ + S+ LWLGANVMLEYS +E
Sbjct: 81 LDIVDHVENK--SNESFSVQYELSEGVYSSAQVNEPKSIYLWLGANVMLEYSFEEAREVL 138
Query: 143 -KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR 185
KN + L I DL F++DQ+T T V V+RVYN+D+ Q+R
Sbjct: 139 RKNKDTVDRQLSESIQDLGFVKDQITTTDVNVSRVYNYDIIQKR 182
>sp|Q9VGP6|PFD3_DROME Probable prefoldin subunit 3 OS=Drosophila melanogaster GN=CG6719
PE=3 SV=2
Length = 185
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 103/165 (62%), Gaps = 10/165 (6%)
Query: 28 GIPAAQFVEDVQTFLSQL-DLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
GIP A F+E++ TF+SQ + + L L E+ +Y+ + L A++R L+++IPD+E+
Sbjct: 13 GIPEAVFLEEIDTFMSQPENENCEKVLQRLDEQHGKYRFMACNLEARRRKLKSQIPDLER 72
Query: 87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE---- 142
L++V L+ + E E F +S+ +F + + T +V LWLGA+VMLEY DE
Sbjct: 73 SLEMVNVLRKEDEERET---QFLLSDQVFIKTLVPPTKTVYLWLGASVMLEYPLDEAEAL 129
Query: 143 --KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR 185
+N+ +A +L+ + D FLRDQ+T T+V +ARVYNW V +R+
Sbjct: 130 LNQNITSAVGNLKSVEHDQDFLRDQITTTEVNMARVYNWGVKKRQ 174
>sp|P48363|PFD3_YEAST Prefoldin subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=PAC10 PE=1 SV=1
Length = 199
Score = 110 bits (274), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 104/185 (56%), Gaps = 17/185 (9%)
Query: 27 RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
RGIP A F+E+V + D QERL +YK ++ LA + L+ +IPD+E
Sbjct: 13 RGIPQAPFIENVNEIIKDPS-DFELCFNKFQERLSKYKFMQESKLATIKQLKTRIPDLEN 71
Query: 87 CLDIVATLQAKKEGG----EALTADFEVSEGIFSRARIEDTD-----SVCLWLGANVMLE 137
L I +L+ + G E + +++++ ++++A+++ + V LWLGA+VMLE
Sbjct: 72 TLKICQSLRNHSDEGDESDEPILLHYQLNDTLYTKAQVDIPEDRADLKVGLWLGADVMLE 131
Query: 138 YSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR-IRQAA 190
Y DE K L +++ SL V D++FLR+ +T +V AR+YNWDV +R+ ++QA
Sbjct: 132 YPIDEAIELLKKKLADSEQSLTVSTEDVEFLRENITTMEVNCARLYNWDVQRRQDLKQAQ 191
Query: 191 AAAAN 195
N
Sbjct: 192 EGTKN 196
>sp|Q10143|PFD3_SCHPO Probable prefoldin subunit 3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC3H8.07c PE=3 SV=1
Length = 169
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 97/166 (58%), Gaps = 14/166 (8%)
Query: 27 RGIPAAQFVEDVQTFLSQLDLD-VNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIE 85
RGIP AQF E +L ++ L QE + +YK +E ++ + L KIPDI
Sbjct: 7 RGIPPAQFFE-----FKELSMEEAQGHLEKFQEAIAKYKFMETSVVRRVASLDDKIPDIR 61
Query: 86 KCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE--- 142
K L V L+ ++ G++ T +E+++ + ++A +E D+V LWLGANVMLEY+ +E
Sbjct: 62 KTLQSVQFLKERQ--GDSFTVTYELNDTLNAKAEVEAKDNVYLWLGANVMLEYTVEEAEA 119
Query: 143 ---KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR 185
+ L +A+ +L+ DL+FLR QVT +V ARVYN+ V R+
Sbjct: 120 LLTQKLNSAEETLKACKEDLEFLRAQVTTMEVNTARVYNYTVLLRK 165
>sp|Q0W5H4|PFDA_UNCMA Prefoldin subunit alpha OS=Uncultured methanogenic archaeon RC-I
GN=pfdA PE=3 SV=1
Length = 138
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 59 RLQQYKLVEMKLLAQQRDL-QAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSR 117
++Q Y+ M+ L QQ +L QA I D++ L + +L+ EG E L + G F
Sbjct: 16 KMQAYQ-GRMEALQQQANLIQASINDVDSALKAITSLEGAGEGHELLVP---IGAGSFVH 71
Query: 118 ARIEDTDSVCLWLGANVMLEYSC 140
A I D V + LGA++ +E +
Sbjct: 72 ATIAKPDKVLVGLGADISVERTV 94
>sp|A8A8L9|PFDA_IGNH4 Prefoldin subunit alpha OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=pfdA PE=3 SV=1
Length = 160
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 81 IPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSC 140
I D+ L+++ L + +G L + G F +A+IEDT++V +G + LE
Sbjct: 59 IDDLYASLEVLDYLTKEGKGKVVLVP---IGAGNFIKAKIEDTNTVITSVGGRLSLEVPS 115
Query: 141 DEKNLENAKASLEVLIADLQFLR 163
DE AK ++E IA L+ +R
Sbjct: 116 DE-----AKKAIESRIAALEQVR 133
>sp|P12435|VP3_BTV10 Core protein VP3 OS=Bluetongue virus 10 (isolate USA) GN=S3 PE=3
SV=1
Length = 901
Score = 33.9 bits (76), Expect = 0.70, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK 98
LQE +Q+ + V+ + R++ +PD++K LD + TL A++
Sbjct: 36 LQEIMQKVRQVQADYMTATREVDFTVPDVQKILDDIKTLAAEQ 78
>sp|Q65750|VP3_BTV13 Core protein VP3 OS=Bluetongue virus 13 (isolate USA) GN=S3 PE=3
SV=1
Length = 901
Score = 33.9 bits (76), Expect = 0.70, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK 98
LQE +Q+ + V+ + R++ +PD++K LD + TL A++
Sbjct: 36 LQEIMQKVRQVQADYMTATREVDFTVPDVQKILDDIKTLAAEQ 78
>sp|Q65749|VP3_BTV11 Core protein VP3 OS=Bluetongue virus 11 (isolate USA) GN=S3 PE=3
SV=1
Length = 901
Score = 33.9 bits (76), Expect = 0.70, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK 98
LQE +Q+ + V+ + R++ +PD++K LD + TL A++
Sbjct: 36 LQEIMQKVRQVQADYMTATREVDFTVPDVQKILDDIKTLAAEQ 78
>sp|P03539|VP3_BTV17 Core protein VP3 OS=Bluetongue virus 17 (isolate USA) GN=S3 PE=3
SV=1
Length = 901
Score = 33.9 bits (76), Expect = 0.72, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK 98
LQE +Q+ + V+ + R++ +PD++K LD + TL A++
Sbjct: 36 LQEIMQKVRQVQADYMTATREVDFTVPDVQKILDDIKTLAAEQ 78
>sp|A1RXA9|PFDA_THEPD Prefoldin subunit alpha OS=Thermofilum pendens (strain Hrk 5)
GN=pfdA PE=3 SV=1
Length = 129
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 11/84 (13%)
Query: 67 EMKLLAQ-----QRDLQ---AKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRA 118
E +LAQ QR++Q I +++ + + + + ++G E L VS G++ RA
Sbjct: 11 EYSVLAQVAEELQREIQLAQTLIAEVDSAILALKNISSLEDGKEILVP---VSAGVYVRA 67
Query: 119 RIEDTDSVCLWLGANVMLEYSCDE 142
I+ + + +G+N+++E S DE
Sbjct: 68 SIKRQEKFLVAIGSNILVEKSLDE 91
>sp|A1T1A5|Y104_MYCVP Putative S-adenosyl-L-methionine-dependent methyltransferase
Mvan_0104 OS=Mycobacterium vanbaalenii (strain DSM 7251
/ PYR-1) GN=Mvan_0104 PE=3 SV=1
Length = 309
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 8/132 (6%)
Query: 9 ASSSSEIATAAASPTTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEM 68
A SS +A+ PT +RR +P +D T L+ D + A+L E L Y +
Sbjct: 140 AYKSSTLASHGVQPTADRREVP-IDLRQDWPTALTHAGFDADQPTAWLAEGLLMYLPADA 198
Query: 69 --KLLAQQRDLQAKIPDI-EKCLDIVA--TLQAKKEGGEALTADFEVSEGIFSRARIEDT 123
+L AQ +L A + + + I A + +E ++TA F+V + ED
Sbjct: 199 QDRLFAQITELSAPGSRVAAESMGIHAQDRRERMRERFASITAQFDVEPMDITELTYEDP 258
Query: 124 D--SVCLWLGAN 133
D V WL A+
Sbjct: 259 DRADVAQWLTAH 270
>sp|Q5JE63|PFDA2_PYRKO Prefoldin subunit alpha 2 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=pfdA2 PE=3 SV=1
Length = 142
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 92 ATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEKNLENAKAS 151
ATL KE G+ + G+ R +IE+ D V + +GA +++ + DE A+ +
Sbjct: 46 ATLAYLKEKGKGKEIYIPLGSGVAIRGKIENPDDVIMDVGAGILVGATVDE-----AREN 100
Query: 152 LEVLIADLQFLR 163
+E I L LR
Sbjct: 101 IEKRIKALMDLR 112
>sp|Q18EV0|PFDA_HALWD Prefoldin subunit alpha OS=Haloquadratum walsbyi (strain DSM 16790)
GN=pfdA PE=3 SV=1
Length = 154
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 17/96 (17%)
Query: 76 DLQAKIPDIEKCLDIVATLQAKKE-----GGEALTADFEVSEGIFSRARIEDTDSVCLWL 130
DLQ++ I++ +D + TL++ GG+A + RA I+D D + + L
Sbjct: 33 DLQSEQTSIDEAMDAIQTLESGATVQVPLGGDA-----------YVRAEIQDADEIIVGL 81
Query: 131 GANVMLEYSCDEKNLENAKASLEVLIADLQFLRDQV 166
GA+ E S D +E+ + L ++ LRD +
Sbjct: 82 GADFAAEQSAD-NAVESLSTKQDALDNRIESLRDDI 116
>sp|P20608|VP3_BTV1A Core protein VP3 OS=Bluetongue virus 1 (isolate Australia) GN=S3
PE=3 SV=1
Length = 901
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK 98
LQE +Q+ + V+ + R++ +PD++K LD + L A++
Sbjct: 36 LQEIMQKVRQVQADYMTATREVDFTVPDVQKILDDIKALAAEQ 78
>sp|O27646|PFDA_METTH Prefoldin subunit alpha OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=pfdA PE=1 SV=1
Length = 141
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 10/87 (11%)
Query: 67 EMKLLAQQRD-LQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDS 125
+++L+ QQ + ++A I ++E ++ +Q K +G E L V G F +A ++DT
Sbjct: 20 QVELIQQQMEAVRATISELEILEKTLSDIQGK-DGSETLVP---VGAGSFIKAELKDTSE 75
Query: 126 VCLWLGANVMLEYSCDEKNLENAKASL 152
V + +GA V + +KN E+A S+
Sbjct: 76 VIMSVGAGVAI-----KKNFEDAMESI 97
>sp|Q3ZWB2|DPO4_DEHSC DNA polymerase IV OS=Dehalococcoides sp. (strain CBDB1) GN=dinB
PE=3 SV=1
Length = 390
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
Query: 73 QQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRAR-IEDTDSVCLWLG 131
++R QA++ I+ TL +K G+ + + E+ + S I D+D + L
Sbjct: 277 RKRGKQARVVQIKIRFADFTTLTRQKHLGQPASGNREIFQTALSLMNGILDSDRQTVRLL 336
Query: 132 ANVMLEYSCDEKNLE--NAKASLEVLIADLQFLRDQVTITQVTVARVY 177
+ ++ EK LE AKA LE L A L +R + + V R Y
Sbjct: 337 GVGISDFCGPEKQLEIDPAKARLEKLDASLDKIRQKYGFSSVQTGRTY 384
>sp|Q12ZJ7|PFDA_METBU Prefoldin subunit alpha OS=Methanococcoides burtonii (strain DSM
6242) GN=pfdA PE=3 SV=1
Length = 138
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 69 KLLAQQRDLQAKIPD-----------IEKCLDIVATLQAKKEGGEALTADFEVSEGIFSR 117
L AQ R+LQ IE C + TL+ K A+ + G
Sbjct: 11 NLAAQHRELQQNAESVNQQLGMVQMSIEDCTRAILTLEELKSASGAINTMIPLGAGALIH 70
Query: 118 ARIEDTDSVCLWLGANVMLEYSCDE 142
A I D D + + +GA + +E + E
Sbjct: 71 ANIADVDKIVVSVGAGISVEKTPTE 95
>sp|Q9VCZ8|PFD5_DROME Probable prefoldin subunit 5 OS=Drosophila melanogaster GN=CG7048
PE=2 SV=1
Length = 168
Score = 30.4 bits (67), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/140 (19%), Positives = 62/140 (44%), Gaps = 16/140 (11%)
Query: 64 KLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFE-----------VSE 112
KL +L+ +++ + +I +++ L + QAK G + F+ ++
Sbjct: 18 KLSPEQLIQIKQEFEQEITNVQDSLSTLHGCQAKYAGSKEALGTFQPNWENRQILVPLTS 77
Query: 113 GIFSRARIEDTDSVCLWLGANVMLEYSCDEKNLENAKASLEVLIADLQFLRDQVTITQVT 172
++ R++D + + +G +E K+LE +K + + +Q +++ +
Sbjct: 78 SMYVPGRVKDLNRFVIDIGTGYYIE-----KDLEGSKDYFKRRVEYVQEQIEKIEKIHLQ 132
Query: 173 VARVYNWDVHQRRIRQAAAA 192
R YN + ++QAAAA
Sbjct: 133 KTRFYNSVMSVLEMKQAAAA 152
>sp|Q9VS48|SLX4_DROME Structure-specific endonuclease subunit SLX4 OS=Drosophila
melanogaster GN=mus312 PE=1 SV=2
Length = 1145
Score = 30.4 bits (67), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 20 ASPTTERRGIPAAQFVEDVQTFLSQLDLDVNSA 52
ASP T++R IP Q ED+ FL D N +
Sbjct: 731 ASPVTKKRAIPQFQTEEDLDAFLMDFSTDGNGS 763
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.126 0.339
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,526,168
Number of Sequences: 539616
Number of extensions: 1975505
Number of successful extensions: 7896
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 7838
Number of HSP's gapped (non-prelim): 90
length of query: 197
length of database: 191,569,459
effective HSP length: 111
effective length of query: 86
effective length of database: 131,672,083
effective search space: 11323799138
effective search space used: 11323799138
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)