Query 029196
Match_columns 197
No_of_seqs 118 out of 208
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 09:02:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029196.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029196hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3313 Molecular chaperone Pr 100.0 3.7E-73 8E-78 472.4 14.1 167 23-190 9-182 (187)
2 PRK03947 prefoldin subunit alp 99.8 2E-20 4.3E-25 148.4 12.3 124 49-175 4-133 (140)
3 TIGR00293 prefoldin, archaeal 99.8 5.5E-20 1.2E-24 143.1 10.4 113 54-170 2-120 (126)
4 cd00584 Prefoldin_alpha Prefol 99.8 2E-18 4.4E-23 134.7 11.2 122 54-178 2-129 (129)
5 PF02996 Prefoldin: Prefoldin 99.6 2.6E-15 5.7E-20 114.9 9.7 109 68-179 6-120 (120)
6 cd00890 Prefoldin Prefoldin is 99.6 5.1E-15 1.1E-19 113.9 10.6 122 54-178 2-129 (129)
7 COG1730 GIM5 Predicted prefold 98.1 0.0001 2.3E-09 60.5 12.4 112 53-167 8-125 (145)
8 PRK14011 prefoldin subunit alp 97.8 0.00073 1.6E-08 55.3 12.2 105 60-170 12-122 (144)
9 PRK01203 prefoldin subunit alp 97.4 0.0044 9.6E-08 50.2 11.7 95 67-166 16-110 (130)
10 KOG3047 Predicted transcriptio 92.8 0.76 1.6E-05 38.0 8.0 41 102-142 65-105 (157)
11 TIGR02338 gimC_beta prefoldin, 92.6 0.28 6E-06 37.7 5.1 83 68-177 20-108 (110)
12 cd00632 Prefoldin_beta Prefold 88.9 0.55 1.2E-05 35.7 3.6 90 57-173 5-100 (105)
13 PF01920 Prefoldin_2: Prefoldi 80.3 15 0.00032 26.9 7.8 91 52-173 3-99 (106)
14 KOG3048 Molecular chaperone Pr 74.9 46 0.001 27.9 9.8 78 84-172 46-123 (153)
15 PF06825 HSBP1: Heat shock fac 74.7 6.9 0.00015 27.4 4.3 37 54-90 10-46 (54)
16 KOG4117 Heat shock factor bind 60.9 23 0.0005 26.1 4.7 36 54-89 23-58 (73)
17 PF09177 Syntaxin-6_N: Syntaxi 60.4 24 0.00051 26.4 5.0 46 48-93 9-67 (97)
18 KOG4098 Molecular chaperone Pr 58.1 22 0.00048 29.4 4.7 79 54-159 18-102 (140)
19 PF02093 Gag_p30: Gag P30 core 53.3 2.7 5.9E-05 36.8 -1.3 85 28-117 119-208 (211)
20 PF00626 Gelsolin: Gelsolin re 42.7 13 0.00028 25.4 1.0 14 120-133 23-36 (76)
21 PRK09343 prefoldin subunit bet 40.7 80 0.0017 24.8 5.4 95 55-176 8-111 (121)
22 PF05308 Mito_fiss_reg: Mitoch 39.4 29 0.00064 30.9 3.0 22 147-168 119-140 (253)
23 PF08336 P4Ha_N: Prolyl 4-Hydr 39.3 1.1E+02 0.0025 23.8 6.0 58 37-95 51-116 (134)
24 PF09789 DUF2353: Uncharacteri 38.3 65 0.0014 29.9 5.1 89 53-172 18-115 (319)
25 PF04508 Pox_A_type_inc: Viral 37.0 28 0.0006 20.6 1.6 19 74-92 3-21 (23)
26 KOG1636 DNA polymerase delta p 35.6 25 0.00053 31.7 1.9 28 114-142 214-243 (260)
27 PF12983 DUF3867: Protein of u 33.0 1.6E+02 0.0036 25.4 6.3 57 29-85 37-93 (186)
28 PF15219 TEX12: Testis-express 32.7 87 0.0019 24.5 4.2 37 53-89 63-99 (100)
29 PF08418 Pol_alpha_B_N: DNA po 30.3 29 0.00064 29.8 1.5 34 56-89 202-235 (253)
30 PF08150 FerB: FerB (NUC096) d 29.6 22 0.00048 26.5 0.5 14 119-132 62-75 (76)
31 smart00262 GEL Gelsolin homolo 28.9 42 0.00091 23.9 1.9 15 120-134 31-45 (90)
32 PF07160 DUF1395: Protein of u 27.8 20 0.00043 31.6 0.0 48 22-70 119-175 (243)
33 KOG4514 Uncharacterized conser 27.6 1E+02 0.0022 27.0 4.3 22 73-94 200-221 (222)
34 COG2178 Predicted RNA-binding 25.0 1.2E+02 0.0025 26.7 4.2 72 25-97 104-180 (204)
35 PF11079 YqhG: Bacterial prote 24.7 35 0.00076 30.9 0.9 17 126-142 118-134 (260)
36 PF10157 DUF2365: Uncharacteri 24.3 1.5E+02 0.0033 24.5 4.6 23 72-94 126-148 (149)
37 PF07332 DUF1469: Protein of u 24.0 64 0.0014 24.4 2.2 20 146-165 102-121 (121)
38 PF11690 DUF3287: Protein of u 24.0 2.4E+02 0.0052 22.4 5.4 31 47-77 38-68 (109)
39 PF02520 DUF148: Domain of unk 23.1 2.2E+02 0.0048 21.4 5.1 60 27-91 14-73 (113)
40 PF09177 Syntaxin-6_N: Syntaxi 22.5 1.5E+02 0.0032 22.0 3.9 41 146-186 42-84 (97)
41 PF15272 BBP1_C: Spindle pole 22.4 1.7E+02 0.0037 25.4 4.7 38 50-88 61-98 (196)
42 PF12377 DuffyBP_N: Duffy bind 22.4 44 0.00095 24.2 0.9 18 125-142 13-32 (66)
43 smart00742 Hr1 Rho effector or 21.6 1.3E+02 0.0027 20.4 3.1 24 143-166 32-55 (57)
44 PRK13655 phosphoenolpyruvate c 21.0 43 0.00093 32.8 0.8 45 129-185 383-427 (494)
45 COG3189 Uncharacterized conser 20.5 1.5E+02 0.0033 23.9 3.7 20 24-45 26-45 (117)
No 1
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-73 Score=472.36 Aligned_cols=167 Identities=54% Similarity=0.872 Sum_probs=160.6
Q ss_pred CCCCCCCCcccccccHHHHhccCC-cCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCC
Q 029196 23 TTERRGIPAAQFVEDVQTFLSQLD-LDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGG 101 (197)
Q Consensus 23 ~~~~rgIP~A~FIedVe~f~~~~~-~~~e~~l~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~ 101 (197)
.+++||||+|+|||||++|+++|+ ...++ ++.|||+|+||||||.+|.+++++|+.|||||++||++|+.|+++++.+
T Consensus 9 ~k~~rGIPeA~fiedV~s~~~qp~~~~~~~-l~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~~ 87 (187)
T KOG3313|consen 9 SKNARGIPEAKFIEDVESYISQPELESLEA-LKKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDEG 87 (187)
T ss_pred hhccCCCChhHHHHHHHHHHcCcccccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCcccC
Confidence 689999999999999999999997 34444 9999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEecccceeeeeeCCCCeeEEeeccceeeeeccCc------cchHHHHHhHHHHHHHHHHHHhhhcceeehhhh
Q 029196 102 EALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTVAR 175 (197)
Q Consensus 102 e~~~t~F~LsD~lyakA~I~ptd~V~LWLGANVMlEY~ldE------~nl~~A~~~l~~~~eDL~fLRdQiTTtEVN~AR 175 (197)
+.++++|+|||+||+||+|||+++|||||||||||||+|+| +||.+|+++|..+++||+|||||||||||||||
T Consensus 88 ~s~~t~f~lsd~vy~ka~V~~~~kV~LWLGAnVMlEY~leEAeaLLkknl~sa~k~l~~~~~DldfLrdQvTTtEVN~Ar 167 (187)
T KOG3313|consen 88 ESFETTFLLSDGVYTKASVPPTDKVYLWLGANVMLEYDLEEAEALLKKNLTSAVKSLDVLEEDLDFLRDQVTTTEVNMAR 167 (187)
T ss_pred cceeEEEEecccceeeeecCCcCeEEEEecceeEEEecHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhceeeeeeeee
Confidence 99999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred hhhhhHHhhHHHHHH
Q 029196 176 VYNWDVHQRRIRQAA 190 (197)
Q Consensus 176 vyNwdV~rrr~~k~~ 190 (197)
||||||++||+.+..
T Consensus 168 vYNw~V~~R~~~~~t 182 (187)
T KOG3313|consen 168 VYNWDVKKRRAAKAT 182 (187)
T ss_pred eeechHHHHHHHhhc
Confidence 999999999987654
No 2
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=99.84 E-value=2e-20 Score=148.35 Aligned_cols=124 Identities=27% Similarity=0.327 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEE
Q 029196 49 VNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCL 128 (197)
Q Consensus 49 ~e~~l~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~L 128 (197)
.+.-++.++++|++|+....+|.+++..|...||+++.+++.|+.|..+. ++.++.|.|++++|++|.|+++++|++
T Consensus 4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~---~~~e~lvplg~~~yv~~~v~~~~kV~v 80 (140)
T PRK03947 4 SEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKG---EGKETLVPIGAGSFVKAKVKDKDKVIV 80 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC---CCCeEEEEcCCCcEEEEEecCCCeEEE
Confidence 45568999999999999999999999999999999999999999997653 568999999999999999999999999
Q ss_pred eeccceeeeeccCc------cchHHHHHhHHHHHHHHHHHHhhhcceeehhhh
Q 029196 129 WLGANVMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTVAR 175 (197)
Q Consensus 129 WLGANVMlEY~ldE------~nl~~A~~~l~~~~eDL~fLRdQiTTtEVN~AR 175 (197)
|||+|||+||+++| ++++.+.++++.+.++|.++++|+.-..=-+.+
T Consensus 81 ~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 81 SLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred EcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 899999999999999999999998765544444
No 3
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=99.82 E-value=5.5e-20 Score=143.06 Aligned_cols=113 Identities=26% Similarity=0.346 Sum_probs=106.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEeeccc
Q 029196 54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133 (197)
Q Consensus 54 ~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLGAN 133 (197)
+.+..++++|+..-..+.+++..|...||+++.++++|++|..+ +..++.++|++++|.+|.|+++++|++|||+|
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~----~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g 77 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGA----EGKETLVPVGAGSFVKAKVKDTDKVLVSIGSG 77 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----CCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCC
Confidence 56788999999999999999999999999999999999999654 45889999999999999999999999999999
Q ss_pred eeeeeccCc------cchHHHHHhHHHHHHHHHHHHhhhccee
Q 029196 134 VMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQ 170 (197)
Q Consensus 134 VMlEY~ldE------~nl~~A~~~l~~~~eDL~fLRdQiTTtE 170 (197)
||+|++++| ++++.+.++++.+.+++.|+++|++...
T Consensus 78 ~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~ 120 (126)
T TIGR00293 78 YYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLE 120 (126)
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999998753
No 4
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=99.78 E-value=2e-18 Score=134.74 Aligned_cols=122 Identities=24% Similarity=0.347 Sum_probs=115.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEeeccc
Q 029196 54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133 (197)
Q Consensus 54 ~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLGAN 133 (197)
..++.++++|+..-.+++++...|...|++...+++.|+.|... +.+.++.++|+.++|.+|.|+++++|++|||+|
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~---~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g 78 (129)
T cd00584 2 EQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKA---DEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTG 78 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCC
Confidence 46889999999999999999999999999999999999999764 357899999999999999999999999999999
Q ss_pred eeeeeccCc------cchHHHHHhHHHHHHHHHHHHhhhcceeehhhhhhh
Q 029196 134 VMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN 178 (197)
Q Consensus 134 VMlEY~ldE------~nl~~A~~~l~~~~eDL~fLRdQiTTtEVN~ARvyN 178 (197)
+|+|++++| ++++..+++++.+++++..+++|++.++.+++++|.
T Consensus 79 ~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~ 129 (129)
T cd00584 79 YYVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQELQQ 129 (129)
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999 999999999999999999999999999999999874
No 5
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=99.62 E-value=2.6e-15 Score=114.88 Aligned_cols=109 Identities=26% Similarity=0.367 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEeeccceeeeeccCc-----
Q 029196 68 MKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE----- 142 (197)
Q Consensus 68 ~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLGANVMlEY~ldE----- 142 (197)
.++.++...|...+.++..+++.|+.|.. .+.+.++.+.|..++|.+|.|+++++|++|||+|+++|.+++|
T Consensus 6 ~~l~~~~~~l~~~~~e~~~~~~~l~~l~~---~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~~l 82 (120)
T PF02996_consen 6 ENLQQQIEQLEEQIEEYEEAKETLEELKK---EKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIEFL 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHHHH
Confidence 57888999999999999999999999977 2467999999999999999999999999999999999999999
Q ss_pred -cchHHHHHhHHHHHHHHHHHHhhhcceeehhhhhhhh
Q 029196 143 -KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNW 179 (197)
Q Consensus 143 -~nl~~A~~~l~~~~eDL~fLRdQiTTtEVN~ARvyNw 179 (197)
+++...+..++.+.+.+..++++++.++-.++++|+|
T Consensus 83 ~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 120 (120)
T PF02996_consen 83 KKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQQ 120 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999997
No 6
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=99.61 E-value=5.1e-15 Score=113.95 Aligned_cols=122 Identities=30% Similarity=0.375 Sum_probs=110.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEeeccc
Q 029196 54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133 (197)
Q Consensus 54 ~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLGAN 133 (197)
..+...+++|+..-..+.+++..|...+++++.+++.|+.|....+ +.+..-.+..++|.+|.|+++++|++|+|+|
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~---~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~ 78 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEE---EKELLVPLGAGLFVKAEVKDDDKVLVDLGTG 78 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CCeEEEecCCceEEEEEECCCCEEEEEecCC
Confidence 4677889999999999999999999999999999999999976542 3334446699999999999999999999999
Q ss_pred eeeeeccCc------cchHHHHHhHHHHHHHHHHHHhhhcceeehhhhhhh
Q 029196 134 VMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN 178 (197)
Q Consensus 134 VMlEY~ldE------~nl~~A~~~l~~~~eDL~fLRdQiTTtEVN~ARvyN 178 (197)
+++|++++| ++++..+++++.+++++..++++++.++.+|.++|+
T Consensus 79 ~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~ 129 (129)
T cd00890 79 VYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQQ 129 (129)
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999 899999999999999999999999999999999874
No 7
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.0001 Score=60.47 Aligned_cols=112 Identities=27% Similarity=0.373 Sum_probs=89.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEeecc
Q 029196 53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA 132 (197)
Q Consensus 53 l~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLGA 132 (197)
+..+-..|+-|.--=..|+++...|..-|-++..+++.|+.|+...+ .-++.+.+.-++|.+|.|...++|-.=+|+
T Consensus 8 le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~---g~E~LVpvGag~fv~~kv~~~~kviV~iGs 84 (145)
T COG1730 8 LEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGE---GKEVLVPVGAGLFVKAKVKDMDKVIVSIGS 84 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceEEEEcCCCceEEEEeccCceEEEEcCC
Confidence 34555556666666677899999999999999999999999987643 238999999999999999999999999999
Q ss_pred ceeeeeccCc------cchHHHHHhHHHHHHHHHHHHhhhc
Q 029196 133 NVMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVT 167 (197)
Q Consensus 133 NVMlEY~ldE------~nl~~A~~~l~~~~eDL~fLRdQiT 167 (197)
++-+|=+++| ++++...+.+..+.+-|+=|-.+++
T Consensus 85 g~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~ 125 (145)
T COG1730 85 GYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIE 125 (145)
T ss_pred ceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 5555555555555555555555444
No 8
>PRK14011 prefoldin subunit alpha; Provisional
Probab=97.75 E-value=0.00073 Score=55.31 Aligned_cols=105 Identities=20% Similarity=0.277 Sum_probs=84.7
Q ss_pred HHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEeeccceeeeec
Q 029196 60 LQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYS 139 (197)
Q Consensus 60 ~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLGANVMlEY~ 139 (197)
+.-|+-==..|.++...|..-+-++..+++.++-+. .+-++.-+|..++|.+|.|.++++|.+=+|+++-+|-+
T Consensus 12 l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~------~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~VEk~ 85 (144)
T PRK14011 12 LEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLK------TSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYLEKD 85 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------CCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEEEec
Confidence 344444344566777777777777788888777443 35778899999999999999999999999999999999
Q ss_pred cCc------cchHHHHHhHHHHHHHHHHHHhhhccee
Q 029196 140 CDE------KNLENAKASLEVLIADLQFLRDQVTITQ 170 (197)
Q Consensus 140 ldE------~nl~~A~~~l~~~~eDL~fLRdQiTTtE 170 (197)
++| ++++...++++.+.+.|+=+++++...+
T Consensus 86 ~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~ 122 (144)
T PRK14011 86 VSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLR 122 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 7788888888888888888888876544
No 9
>PRK01203 prefoldin subunit alpha; Provisional
Probab=97.37 E-value=0.0044 Score=50.20 Aligned_cols=95 Identities=18% Similarity=0.296 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEeeccceeeeeccCccchH
Q 029196 67 EMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEKNLE 146 (197)
Q Consensus 67 E~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLGANVMlEY~ldE~nl~ 146 (197)
=..|.++...|+.-+-++..|++.++-+.. ++.-++.-+|..++|.+|.|.++++|-+=+|+++.+|=++++ .++
T Consensus 16 ~e~l~~ql~~L~~a~se~~~~ie~L~~~~~----~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VEK~~e~-kie 90 (130)
T PRK01203 16 ISSVDSQIDSLNKTLSEVQQTISFLSDNEL----DNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIAEERER-TIE 90 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccc----CCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEEecHHH-HHH
Confidence 345677778888888888888888877532 234778899999999999999999999999999999999998 444
Q ss_pred HHHHhHHHHHHHHHHHHhhh
Q 029196 147 NAKASLEVLIADLQFLRDQV 166 (197)
Q Consensus 147 ~A~~~l~~~~eDL~fLRdQi 166 (197)
..+++++.++.=+.=.+.+.
T Consensus 91 ~L~~~ie~Le~~i~~K~~~l 110 (130)
T PRK01203 91 RLKENLEDLKDSIQKLNDQR 110 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444443333333333
No 10
>KOG3047 consensus Predicted transcriptional regulator UXT [Transcription]
Probab=92.77 E-value=0.76 Score=37.99 Aligned_cols=41 Identities=17% Similarity=0.308 Sum_probs=36.9
Q ss_pred CceeEEEEecccceeeeeeCCCCeeEEeeccceeeeeccCc
Q 029196 102 EALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE 142 (197)
Q Consensus 102 e~~~t~F~LsD~lyakA~I~ptd~V~LWLGANVMlEY~ldE 142 (197)
.+++..-.|.-++|.--.||.|..|++-||-++.||..|.+
T Consensus 65 kel~~ktdLGcnfFmdi~VpDTk~i~VaL~~~fflElkLad 105 (157)
T KOG3047|consen 65 KELEGKTDLGCNFFMDIEVPDTKHIVVALCDDFFLELKLAD 105 (157)
T ss_pred hhhhccccccceeeEeeecCCcceEEEEeecceeeeehHHH
Confidence 45666677888999999999999999999999999999998
No 11
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=92.62 E-value=0.28 Score=37.74 Aligned_cols=83 Identities=20% Similarity=0.319 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEeeccceeeeeccCc-----
Q 029196 68 MKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE----- 142 (197)
Q Consensus 68 ~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLGANVMlEY~ldE----- 142 (197)
..+.+++..|...+-+.+.+++-+..|. |..+||-=+| +|+|+-+.+|
T Consensus 20 ~~l~~q~~~le~~~~E~~~v~~eL~~l~--------------------------~d~~vyk~VG-~vlv~~~~~e~~~~l 72 (110)
T TIGR02338 20 QAVATQKQQVEAQLKEAEKALEELERLP--------------------------DDTPVYKSVG-NLLVKTDKEEAIQEL 72 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------------------CcchhHHHhc-hhhheecHHHHHHHH
Confidence 4556677777777777777777666552 3334444455 4999999999
Q ss_pred -cchHHHHHhHHHHHHHHHHHHhhhcceeehhhhhh
Q 029196 143 -KNLENAKASLEVLIADLQFLRDQVTITQVTVARVY 177 (197)
Q Consensus 143 -~nl~~A~~~l~~~~eDL~fLRdQiTTtEVN~ARvy 177 (197)
++++.....++.++..+++|+.++.-++=++...+
T Consensus 73 ~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 73 KEKKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999999988777766554
No 12
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=88.89 E-value=0.55 Score=35.69 Aligned_cols=90 Identities=21% Similarity=0.308 Sum_probs=63.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEeeccceee
Q 029196 57 QERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVML 136 (197)
Q Consensus 57 qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLGANVMl 136 (197)
...|++|+-=-..+.+++..|...+-+.+.+++-+..|. |..+||.=+| +|++
T Consensus 5 ~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~--------------------------~d~~vy~~VG-~vfv 57 (105)
T cd00632 5 LAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLA--------------------------DDAEVYKLVG-NVLV 57 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------------------CcchHHHHhh-hHHh
Confidence 334444444344667778888888888888877776662 2334444444 4999
Q ss_pred eeccCc------cchHHHHHhHHHHHHHHHHHHhhhcceeehh
Q 029196 137 EYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTV 173 (197)
Q Consensus 137 EY~ldE------~nl~~A~~~l~~~~eDL~fLRdQiTTtEVN~ 173 (197)
+.|.+| ++++.....++.++..++.|..++.-.+.++
T Consensus 58 ~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 58 KQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 7788888888899999999998887555444
No 13
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=80.25 E-value=15 Score=26.90 Aligned_cols=91 Identities=20% Similarity=0.317 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEeec
Q 029196 52 ALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLG 131 (197)
Q Consensus 52 ~l~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLG 131 (197)
.+..|+.+.+.|.-+.. ++..|...+-+++.+++-+..| ||..+||.=+|
T Consensus 3 ~~~~~~~l~~~l~~~~~----q~~~l~~~~~~~~~~~~eL~~l--------------------------~~~~~~y~~vG 52 (106)
T PF01920_consen 3 LQNKFQELNQQLQQLEQ----QIQQLERQLRELELTLEELEKL--------------------------DDDRKVYKSVG 52 (106)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTS--------------------------STT-EEEEEET
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhC--------------------------CCcchhHHHHh
Confidence 45566666666655554 3444555555666666655544 23334444443
Q ss_pred cceeeeeccCc------cchHHHHHhHHHHHHHHHHHHhhhcceeehh
Q 029196 132 ANVMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTV 173 (197)
Q Consensus 132 ANVMlEY~ldE------~nl~~A~~~l~~~~eDL~fLRdQiTTtEVN~ 173 (197)
++.+..|.++ +.++.++..++.++.-+.++.+++.-++.++
T Consensus 53 -~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 53 -KMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp -TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888999998 7777777777788888888877776554443
No 14
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=74.89 E-value=46 Score=27.91 Aligned_cols=78 Identities=12% Similarity=0.250 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEeeccceeeeeccCccchHHHHHhHHHHHHHHHHHH
Q 029196 84 IEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEKNLENAKASLEVLIADLQFLR 163 (197)
Q Consensus 84 ikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLGANVMlEY~ldE~nl~~A~~~l~~~~eDL~fLR 163 (197)
...+++.+.-++.. .+.-+....|+..+|..+++...++|.+=.|-+--+|=+.+ ...+-+..-.+||.
T Consensus 46 ~~~~~~aln~~~~~---~eGk~~LVPLTsSlYVPGkl~d~~k~lVDIGTGYyVEK~~e--------~akdyfkRKve~l~ 114 (153)
T KOG3048|consen 46 YEESIAALNDVQAA---NEGKKLLVPLTSSLYVPGKLSDNSKFLVDIGTGYYVEKDAE--------DAKDYFKRKVEYLT 114 (153)
T ss_pred HHHHHHHHhhcccC---CCCCeEEEecccceeccceeccccceeEeccCceEEeechH--------HHHHHHHHHHHHHH
Confidence 34455555555443 34566778999999999999999999999999988886644 45567777788888
Q ss_pred hhhcceeeh
Q 029196 164 DQVTITQVT 172 (197)
Q Consensus 164 dQiTTtEVN 172 (197)
.||-..+=-
T Consensus 115 kq~e~i~~i 123 (153)
T KOG3048|consen 115 KQIEQIEGI 123 (153)
T ss_pred HHHHHHHHH
Confidence 887766543
No 15
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=74.73 E-value=6.9 Score=27.38 Aligned_cols=37 Identities=19% Similarity=0.427 Sum_probs=31.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHH
Q 029196 54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDI 90 (197)
Q Consensus 54 ~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~ 90 (197)
..|+++-.||.-|-.++..|...+-.+|.++++++.-
T Consensus 10 ~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~d 46 (54)
T PF06825_consen 10 NLLQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIAD 46 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3567777899999999999999999999999999863
No 16
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=60.93 E-value=23 Score=26.09 Aligned_cols=36 Identities=19% Similarity=0.485 Sum_probs=31.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHH
Q 029196 54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLD 89 (197)
Q Consensus 54 ~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~ 89 (197)
..||....||.-|-.++..|...+..+|.|++|++.
T Consensus 23 ~lLQq~QDkFQtMSDQII~RiDDM~~riDDLEKnIa 58 (73)
T KOG4117|consen 23 GLLQQTQDKFQTMSDQIIGRIDDMSSRIDDLEKNIA 58 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 356666679999999999999999999999999875
No 17
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=60.45 E-value=24 Score=26.36 Aligned_cols=46 Identities=20% Similarity=0.367 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHHhHHHH-------------HHHHHHHHHHHHhccccHHHHHHHHHH
Q 029196 48 DVNSALAFLQERLQQYKLV-------------EMKLLAQQRDLQAKIPDIEKCLDIVAT 93 (197)
Q Consensus 48 ~~e~~l~~~qe~~~KYkfm-------------E~~l~~~~~~L~~KIPdikktL~~V~~ 93 (197)
+++..+.+++.+|+.|..+ ...|......+...|-|+.+++.+|+.
T Consensus 9 ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~ 67 (97)
T PF09177_consen 9 EVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEK 67 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788888999999988886 567788888889999999999998764
No 18
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=58.12 E-value=22 Score=29.38 Aligned_cols=79 Identities=15% Similarity=0.252 Sum_probs=49.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEeeccc
Q 029196 54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133 (197)
Q Consensus 54 ~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLGAN 133 (197)
+.++..|..|+--..++.++...|.-..-+-+--+++++-| +|+-++ .-+=.+
T Consensus 18 ~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~--------------------------dp~RKC-fRmIgG 70 (140)
T KOG4098|consen 18 QAVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDL--------------------------DPTRKC-FRMIGG 70 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--------------------------ChhhHH-HHHhcc
Confidence 46677788888777777777777776666666655555444 233333 333458
Q ss_pred eeeeeccCc------cchHHHHHhHHHHHHHH
Q 029196 134 VMLEYSCDE------KNLENAKASLEVLIADL 159 (197)
Q Consensus 134 VMlEY~ldE------~nl~~A~~~l~~~~eDL 159 (197)
|.|||++.| .|.++.+.-+..+.++|
T Consensus 71 vLVErTVkeVlP~L~~nke~i~~~i~~l~~qL 102 (140)
T KOG4098|consen 71 VLVERTVKEVLPILQTNKENIEKVIKKLTDQL 102 (140)
T ss_pred chhhhhHHHHhHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999 44444444444444444
No 19
>PF02093 Gag_p30: Gag P30 core shell protein; InterPro: IPR003036 P30 is essential for viral assembly []. Cleavage of P70 in vitro can be accompanied by a shift from a concentrically coiled internal strand ("immature") to a collapsed ("mature") form of the virus core [].; GO: 0019068 virion assembly; PDB: 3BP9_U 1U7K_D 2Y4Z_A 1BM4_A.
Probab=53.33 E-value=2.7 Score=36.82 Aligned_cols=85 Identities=20% Similarity=0.242 Sum_probs=24.8
Q ss_pred CCCcccccccHHHHhccCCcCHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----H-hccccHHHHHHHHHHHHhhhcCCC
Q 029196 28 GIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDL----Q-AKIPDIEKCLDIVATLQAKKEGGE 102 (197)
Q Consensus 28 gIP~A~FIedVe~f~~~~~~~~e~~l~~~qe~~~KYkfmE~~l~~~~~~L----~-~KIPdikktL~~V~~L~~kk~~~e 102 (197)
+.|+..=+..|.+.+..++.+.-.-|.+|.|.|.||.=+.-.-...+..+ . .--|||++-|+-++-+...
T Consensus 119 aa~Kp~NlsKv~~v~Qg~~EsPs~FLeRL~ea~r~yTp~dP~~~~~~~~v~~~Fi~QsapDIrkKLq~~eg~~~~----- 193 (211)
T PF02093_consen 119 AARKPTNLSKVREVTQGPNESPSAFLERLREAYRKYTPFDPESPEGQASVAMSFITQSAPDIRKKLQKLEGLQGK----- 193 (211)
T ss_dssp HHHH-----S--TTTTTGGGHHHHHHHHHHHHHHHTS-------------------------------------------
T ss_pred cCCCCccHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHhccHHHHHHHHhhcCcccC-----
Confidence 45666677778888877756777889999999999988765544444443 2 3349999999988877543
Q ss_pred ceeEEEEecccceee
Q 029196 103 ALTADFEVSEGIFSR 117 (197)
Q Consensus 103 ~~~t~F~LsD~lyak 117 (197)
++.=.-.+++.||.+
T Consensus 194 ~l~~Ll~~A~kVf~~ 208 (211)
T PF02093_consen 194 TLSELLKEAEKVFNN 208 (211)
T ss_dssp ---------------
T ss_pred CHHHHHHHHHHHHhc
Confidence 455556666777643
No 20
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=42.67 E-value=13 Score=25.37 Aligned_cols=14 Identities=14% Similarity=0.612 Sum_probs=11.5
Q ss_pred eCCCCeeEEeeccc
Q 029196 120 IEDTDSVCLWLGAN 133 (197)
Q Consensus 120 I~ptd~V~LWLGAN 133 (197)
++....||+|+|.+
T Consensus 23 ld~~~~i~vW~G~~ 36 (76)
T PF00626_consen 23 LDCGYEIFVWVGKK 36 (76)
T ss_dssp EEESSEEEEEEHTT
T ss_pred EEeCCCcEEEEecc
Confidence 45566999999998
No 21
>PRK09343 prefoldin subunit beta; Provisional
Probab=40.75 E-value=80 Score=24.76 Aligned_cols=95 Identities=19% Similarity=0.303 Sum_probs=64.7
Q ss_pred HHHHHHHhHHHHHHH---HHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEeec
Q 029196 55 FLQERLQQYKLVEMK---LLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLG 131 (197)
Q Consensus 55 ~~qe~~~KYkfmE~~---l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLG 131 (197)
.+|..+.+|.-+... +.+++..|...+-+.+.+++=+..|. +..+||==+|
T Consensus 8 ~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~--------------------------~d~~VYk~VG 61 (121)
T PRK09343 8 EVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLP--------------------------DDTPIYKIVG 61 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------------------CcchhHHHhh
Confidence 455555555555443 34566777777777777777666662 2223333333
Q ss_pred cceeeeeccCc------cchHHHHHhHHHHHHHHHHHHhhhcceeehhhhh
Q 029196 132 ANVMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTVARV 176 (197)
Q Consensus 132 ANVMlEY~ldE------~nl~~A~~~l~~~~eDL~fLRdQiTTtEVN~ARv 176 (197)
.|+|-=|.+| ++++.....++.++...++|+.++.-.+-++..+
T Consensus 62 -~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 62 -NLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred -HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666668888 7888889999999999999999998877776554
No 22
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=39.40 E-value=29 Score=30.92 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=18.8
Q ss_pred HHHHhHHHHHHHHHHHHhhhcc
Q 029196 147 NAKASLEVLIADLQFLRDQVTI 168 (197)
Q Consensus 147 ~A~~~l~~~~eDL~fLRdQiTT 168 (197)
.|-+.+..++..|.+||.||-.
T Consensus 119 ~AlqKIsALEdELs~LRaQIA~ 140 (253)
T PF05308_consen 119 AALQKISALEDELSRLRAQIAK 140 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4667889999999999999863
No 23
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=39.28 E-value=1.1e+02 Score=23.84 Aligned_cols=58 Identities=28% Similarity=0.433 Sum_probs=33.3
Q ss_pred cHHHHhccCCcCHHHHHHHHHHHHHhH-HHHHHH----HHHHHHHHHhcccc---HHHHHHHHHHHH
Q 029196 37 DVQTFLSQLDLDVNSALAFLQERLQQY-KLVEMK----LLAQQRDLQAKIPD---IEKCLDIVATLQ 95 (197)
Q Consensus 37 dVe~f~~~~~~~~e~~l~~~qe~~~KY-kfmE~~----l~~~~~~L~~KIPd---ikktL~~V~~L~ 95 (197)
|.+.|+..| -++=.++++|..-..+. ++|+.. ..+....+..++|. +..+..-+..|+
T Consensus 51 d~e~yl~nP-lnaF~LIrRl~~dW~~~~~~~~~~~~~~~~~~~~~~~~~~Pt~~Dl~gA~~~l~RLQ 116 (134)
T PF08336_consen 51 DPEEYLSNP-LNAFSLIRRLHQDWPKWEKLMEQPVGQEQLQNLQELRSKLPTEEDLEGAAEGLLRLQ 116 (134)
T ss_pred chhhhhhcH-HHHHHHHHHHHHhhhhHHHHHHHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 667788665 34444566655554432 456655 44566667778995 445555554444
No 24
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=38.30 E-value=65 Score=29.90 Aligned_cols=89 Identities=24% Similarity=0.298 Sum_probs=56.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEeecc
Q 029196 53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA 132 (197)
Q Consensus 53 l~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLGA 132 (197)
|..+|.-..+||.|-.+|+.+...|+.+.-++.-.. . -|....++|.. -
T Consensus 18 Le~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~-------~-----------------~~~d~~~~~~~-------~ 66 (319)
T PF09789_consen 18 LEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEA-------A-----------------GFGDPSIPPEK-------E 66 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------c-----------------ccCCccCCccc-------c
Confidence 567888899999999999999998887764433100 0 02222233322 1
Q ss_pred ceeeeeccCc---------cchHHHHHhHHHHHHHHHHHHhhhcceeeh
Q 029196 133 NVMLEYSCDE---------KNLENAKASLEVLIADLQFLRDQVTITQVT 172 (197)
Q Consensus 133 NVMlEY~ldE---------~nl~~A~~~l~~~~eDL~fLRdQiTTtEVN 172 (197)
++-|.=-|-+ ..+...++.+..+..|..-||+++.-..|-
T Consensus 67 ~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~ 115 (319)
T PF09789_consen 67 NKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVG 115 (319)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhh
Confidence 1111111111 456678888899999999999998876553
No 25
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=37.00 E-value=28 Score=20.57 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=16.0
Q ss_pred HHHHHhccccHHHHHHHHH
Q 029196 74 QRDLQAKIPDIEKCLDIVA 92 (197)
Q Consensus 74 ~~~L~~KIPdikktL~~V~ 92 (197)
..+|+.+|-|+++-|..+.
T Consensus 3 ~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4688999999999998764
No 26
>KOG1636 consensus DNA polymerase delta processivity factor (proliferating cell nuclear antigen) [Replication, recombination and repair]
Probab=35.62 E-value=25 Score=31.71 Aligned_cols=28 Identities=32% Similarity=0.544 Sum_probs=23.4
Q ss_pred ceeeeeeCCCCeeEEeeccc--eeeeeccCc
Q 029196 114 IFSRARIEDTDSVCLWLGAN--VMLEYSCDE 142 (197)
Q Consensus 114 lyakA~I~ptd~V~LWLGAN--VMlEY~ldE 142 (197)
.|.||+ |=.++|.|.||+. |.+||++++
T Consensus 214 ~ftKat-pLs~rV~lsls~~~P~~vey~i~~ 243 (260)
T KOG1636|consen 214 QFTKAT-PLSDRVTLSLSSEVPVVVEYKIED 243 (260)
T ss_pred Hhhccc-cccceEEEEecCCCcEEEEEeccc
Confidence 467775 4489999999987 799999998
No 27
>PF12983 DUF3867: Protein of unknown function (DUF3867); InterPro: IPR024218 This entry represents a family of functionally uncharacterised proteins that are found in bacteria. Proteins in this family are approximately 190 amino acids in length.
Probab=32.96 E-value=1.6e+02 Score=25.43 Aligned_cols=57 Identities=9% Similarity=0.304 Sum_probs=46.8
Q ss_pred CCcccccccHHHHhccCCcCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHH
Q 029196 29 IPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIE 85 (197)
Q Consensus 29 IP~A~FIedVe~f~~~~~~~~e~~l~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdik 85 (197)
.--+.|..+|-+||.....+-+..+.-...++-+|.|=-..+..+..++---++.+.
T Consensus 37 lsm~dFsk~I~~YmeeNNISqeKf~niQkk~mERYGfd~~~iE~q~K~~Gid~~~~~ 93 (186)
T PF12983_consen 37 LSMADFSKKIMEYMEENNISQEKFLNIQKKFMERYGFDPSEIEKQMKSMGIDMSSLN 93 (186)
T ss_pred ccHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCccccc
Confidence 445789999999998876789999998888999999988899999888865544433
No 28
>PF15219 TEX12: Testis-expressed 12
Probab=32.67 E-value=87 Score=24.53 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=27.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHH
Q 029196 53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLD 89 (197)
Q Consensus 53 l~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~ 89 (197)
+..++.++.-=.-+|..|.+++..|.+++.=|..||.
T Consensus 63 i~eiD~lfkEA~~lEnfLkqkre~LrQrlt~isntL~ 99 (100)
T PF15219_consen 63 ITEIDGLFKEANALENFLKQKRECLRQRLTVISNTLQ 99 (100)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666777888888888888888777777663
No 29
>PF08418 Pol_alpha_B_N: DNA polymerase alpha subunit B N-terminal; InterPro: IPR013627 This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation []. ; PDB: 4E2I_9 2KEB_A 3FLO_G.
Probab=30.26 E-value=29 Score=29.77 Aligned_cols=34 Identities=15% Similarity=0.315 Sum_probs=18.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHH
Q 029196 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLD 89 (197)
Q Consensus 56 ~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~ 89 (197)
++-.--+||+|-+.|..+-.-|..+|-++-+.++
T Consensus 202 ~d~~k~~yr~M~~kL~e~sevLDdrId~f~~~iq 235 (253)
T PF08418_consen 202 FDPKKYKYRYMFQKLSERSEVLDDRIDEFAELIQ 235 (253)
T ss_dssp ----------S---HHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444569999999999999999999999887653
No 30
>PF08150 FerB: FerB (NUC096) domain; InterPro: IPR012561 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This is central domain B in proteins of the Ferlin family [].; GO: 0016021 integral to membrane
Probab=29.61 E-value=22 Score=26.51 Aligned_cols=14 Identities=43% Similarity=0.769 Sum_probs=10.9
Q ss_pred eeCCCCeeEEeecc
Q 029196 119 RIEDTDSVCLWLGA 132 (197)
Q Consensus 119 ~I~ptd~V~LWLGA 132 (197)
.||..=.||||||-
T Consensus 62 ~i~akl~v~lWlGl 75 (76)
T PF08150_consen 62 KIPAKLRVYLWLGL 75 (76)
T ss_pred cEeEEEEEEEEccc
Confidence 55556689999995
No 31
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=28.90 E-value=42 Score=23.88 Aligned_cols=15 Identities=13% Similarity=0.700 Sum_probs=11.8
Q ss_pred eCCCCeeEEeeccce
Q 029196 120 IEDTDSVCLWLGANV 134 (197)
Q Consensus 120 I~ptd~V~LWLGANV 134 (197)
++....+|+|+|.++
T Consensus 31 ld~~~~iyvW~G~~a 45 (90)
T smart00262 31 LDTGSEIYVWVGKKS 45 (90)
T ss_pred EECCCEEEEEECCCC
Confidence 345679999999875
No 32
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=27.78 E-value=20 Score=31.59 Aligned_cols=48 Identities=23% Similarity=0.461 Sum_probs=0.0
Q ss_pred CCCCCCCCCccccc-----ccHHHHhccCCcCHHHHHHHHHHH----HHhHHHHHHHH
Q 029196 22 PTTERRGIPAAQFV-----EDVQTFLSQLDLDVNSALAFLQER----LQQYKLVEMKL 70 (197)
Q Consensus 22 ~~~~~rgIP~A~FI-----edVe~f~~~~~~~~e~~l~~~qe~----~~KYkfmE~~l 70 (197)
....+++||...|| +.|-.||.+. -+.+.+-..++++ ..||++|-...
T Consensus 119 ~~kk~~~i~~~~~IT~eEF~sIPkYMrGR-LTleqlN~~i~ein~~~~~Ky~iL~~pk 175 (243)
T PF07160_consen 119 PPKKGRGIPPMWFITVEEFDSIPKYMRGR-LTLEQLNAAIDEINKAVEAKYKILAKPK 175 (243)
T ss_dssp ----------------------------------------------------------
T ss_pred CCccCCCCCccccccHHHHhcchHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 44566789999998 5788999765 3444443333433 58999997654
No 33
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.55 E-value=1e+02 Score=27.02 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=16.1
Q ss_pred HHHHHHhccccHHHHHHHHHHH
Q 029196 73 QQRDLQAKIPDIEKCLDIVATL 94 (197)
Q Consensus 73 ~~~~L~~KIPdikktL~~V~~L 94 (197)
-.+.|-.+|-+|++.++|++.|
T Consensus 200 pv~~La~qir~irRlve~lesl 221 (222)
T KOG4514|consen 200 PVEQLAQQIRQIRRLVEMLESL 221 (222)
T ss_pred hHHHHHHHHHHHHHHHHHHHhh
Confidence 4566777888888888877655
No 34
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=24.96 E-value=1.2e+02 Score=26.69 Aligned_cols=72 Identities=18% Similarity=0.308 Sum_probs=48.2
Q ss_pred CCCCCCcccccccHHHHhccCC-cCHHHHHH-HHHHHHHhHHHHHHHHHHHHHHH---HhccccHHHHHHHHHHHHhh
Q 029196 25 ERRGIPAAQFVEDVQTFLSQLD-LDVNSALA-FLQERLQQYKLVEMKLLAQQRDL---QAKIPDIEKCLDIVATLQAK 97 (197)
Q Consensus 25 ~~rgIP~A~FIedVe~f~~~~~-~~~e~~l~-~~qe~~~KYkfmE~~l~~~~~~L---~~KIPdikktL~~V~~L~~k 97 (197)
..-|||.+.||--|.++++.-. --.+.+.+ .|++.-+-|+|||. +-.....+ +.=.|.+++-+++.+-+..+
T Consensus 104 ~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~-lY~~Lm~fdyP~~l~~~LR~K~Dvar~~lek 180 (204)
T COG2178 104 EELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK-LYEELMEFDYPKALVPGLRQKQDVARSLLEK 180 (204)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HHHHHHhcCCchhhhhhHHHHHHHHHHHHHH
Confidence 3469999999999999986532 23444443 67888899999995 33333333 33445677777777777665
No 35
>PF11079 YqhG: Bacterial protein YqhG of unknown function; InterPro: IPR024562 This family of putative proteins appears to be restricted to Firmicutes. Their function is not known.
Probab=24.67 E-value=35 Score=30.88 Aligned_cols=17 Identities=47% Similarity=1.103 Sum_probs=14.9
Q ss_pred eEEeeccceeeeeccCc
Q 029196 126 VCLWLGANVMLEYSCDE 142 (197)
Q Consensus 126 V~LWLGANVMlEY~ldE 142 (197)
.+=|||-|+-++|..|=
T Consensus 118 L~PWL~vN~KVsy~cD~ 134 (260)
T PF11079_consen 118 LTPWLGVNVKVSYQCDR 134 (260)
T ss_pred ccceeEEeEEEEEeecc
Confidence 45699999999999886
No 36
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=24.30 E-value=1.5e+02 Score=24.46 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=18.6
Q ss_pred HHHHHHHhccccHHHHHHHHHHH
Q 029196 72 AQQRDLQAKIPDIEKCLDIVATL 94 (197)
Q Consensus 72 ~~~~~L~~KIPdikktL~~V~~L 94 (197)
+....|..||-+|+++|+.++-+
T Consensus 126 ~~v~~La~qIK~Ik~~lD~lE~~ 148 (149)
T PF10157_consen 126 KPVYKLAQQIKDIKKLLDLLESL 148 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45668899999999999987643
No 37
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=24.04 E-value=64 Score=24.40 Aligned_cols=20 Identities=15% Similarity=0.296 Sum_probs=16.2
Q ss_pred HHHHHhHHHHHHHHHHHHhh
Q 029196 146 ENAKASLEVLIADLQFLRDQ 165 (197)
Q Consensus 146 ~~A~~~l~~~~eDL~fLRdQ 165 (197)
..-.+..+++++|.++||+|
T Consensus 102 ~~~~~t~~~l~~d~~~lk~~ 121 (121)
T PF07332_consen 102 PPFEETIAELKEDIAALKER 121 (121)
T ss_pred CCHHHHHHHHHHHHHHhhcC
Confidence 44567788999999999986
No 38
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=24.02 E-value=2.4e+02 Score=22.42 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=27.1
Q ss_pred cCHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 029196 47 LDVNSALAFLQERLQQYKLVEMKLLAQQRDL 77 (197)
Q Consensus 47 ~~~e~~l~~~qe~~~KYkfmE~~l~~~~~~L 77 (197)
..+...++....+|++|.-+-..|..++++|
T Consensus 38 ~ea~~F~~kV~~qH~~~~~e~r~L~kKi~~l 68 (109)
T PF11690_consen 38 KEAYDFIDKVVDQHQRYCDERRKLRKKIQDL 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788999999999999998888888888
No 39
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=23.06 E-value=2.2e+02 Score=21.43 Aligned_cols=60 Identities=8% Similarity=0.132 Sum_probs=39.0
Q ss_pred CCCCcccccccHHHHhccCCcCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHH
Q 029196 27 RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIV 91 (197)
Q Consensus 27 rgIP~A~FIedVe~f~~~~~~~~e~~l~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V 91 (197)
.+++.+..-..|..|..+. ++...+..|.. +-.-....+.+......+++|+.-..|.-|
T Consensus 14 ~~lt~~e~~~~l~~Wa~~~--~v~~~~~~f~~---~~~~~~~~~~~~~~~vi~~L~~a~~~l~~I 73 (113)
T PF02520_consen 14 PNLTKAEIEEQLDEWAEKY--GVQDQYNEFKA---QVQAQKEEVRKNVTAVISNLSSAFAKLSAI 73 (113)
T ss_pred CCCCHHHHHHHHHHHHHHC--CcHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788889999999999876 34444444443 334445566666777777777555555443
No 40
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=22.46 E-value=1.5e+02 Score=21.99 Aligned_cols=41 Identities=20% Similarity=0.300 Sum_probs=31.7
Q ss_pred HHHHHhHHHHHHHHHHHHhhhcceeehhhhh--hhhhHHhhHH
Q 029196 146 ENAKASLEVLIADLQFLRDQVTITQVTVARV--YNWDVHQRRI 186 (197)
Q Consensus 146 ~~A~~~l~~~~eDL~fLRdQiTTtEVN~ARv--yNwdV~rrr~ 186 (197)
......+..+++||+-|..=|.+.|-|-+|. =.-.+.+||.
T Consensus 42 ~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr~ 84 (97)
T PF09177_consen 42 RELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRRQ 84 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHH
Confidence 4556778889999999999999999998884 2344555654
No 41
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=22.44 E-value=1.7e+02 Score=25.42 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHH
Q 029196 50 NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCL 88 (197)
Q Consensus 50 e~~l~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL 88 (197)
..+....=.+|+||+-+=. ...+...|..+|+.+++.|
T Consensus 61 KklydnYYkL~~KY~~LK~-~~~~~~~l~~~i~~le~~l 98 (196)
T PF15272_consen 61 KKLYDNYYKLYSKYQELKK-SSKQSEDLQSRISNLEKQL 98 (196)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhHhhHHHHHHHHHHHHHH
Confidence 3444555567899998876 6667788999999999888
No 42
>PF12377 DuffyBP_N: Duffy binding protein N terminal ; InterPro: IPR021032 This entry represents the N terminus of the Duffy-antigen binding protein and is thought to bind to the human erythrocytes Duffy blood group determinant. These domains are found in eukaryotic proteins and are approximately 70 amino acids in length [].
Probab=22.42 E-value=44 Score=24.16 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=14.3
Q ss_pred eeEEeeccc--eeeeeccCc
Q 029196 125 SVCLWLGAN--VMLEYSCDE 142 (197)
Q Consensus 125 ~V~LWLGAN--VMlEY~ldE 142 (197)
+-.=|=|+| |||-|.+.-
T Consensus 13 ktd~geg~~nlvmldyd~s~ 32 (66)
T PF12377_consen 13 KTDNGEGCNNLVMLDYDTSS 32 (66)
T ss_pred cccCcccccceEEEEeeccC
Confidence 455688998 999998876
No 43
>smart00742 Hr1 Rho effector or protein kinase C-related kinase homology region 1 homologues. Alpha-helical domain found in vertebrate PRK1 and yeast PKC1 protein kinases C. The HR1 in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Also called RBD - Rho-binding domain
Probab=21.61 E-value=1.3e+02 Score=20.45 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.8
Q ss_pred cchHHHHHhHHHHHHHHHHHHhhh
Q 029196 143 KNLENAKASLEVLIADLQFLRDQV 166 (197)
Q Consensus 143 ~nl~~A~~~l~~~~eDL~fLRdQi 166 (197)
+-+..|..++.....-|++|++++
T Consensus 32 k~~~~a~~~l~es~~ki~~L~~~L 55 (57)
T smart00742 32 KVLSEAQSMLRESNQKLDLLKEEL 55 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478899999999999999999986
No 44
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=20.96 E-value=43 Score=32.83 Aligned_cols=45 Identities=29% Similarity=0.436 Sum_probs=37.2
Q ss_pred eeccceeeeeccCccchHHHHHhHHHHHHHHHHHHhhhcceeehhhhhhhhhHHhhH
Q 029196 129 WLGANVMLEYSCDEKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR 185 (197)
Q Consensus 129 WLGANVMlEY~ldE~nl~~A~~~l~~~~eDL~fLRdQiTTtEVN~ARvyNwdV~rrr 185 (197)
|||++.-|+.-.+ ++|+...+..-.+.+||.|. +|.+|.++..+-
T Consensus 383 wlG~g~aL~~~~~-~~ld~l~~~yp~l~~dl~~a-----------~~y~n~~~~~~~ 427 (494)
T PRK13655 383 LIGAGRLLELAKE-DDLDILLENYPNLKKDLEFA-----------ARFFNPEVAEKL 427 (494)
T ss_pred HHhHHHHHHHHHH-hHHHHHHHHhhhHHHHHHHH-----------HHhcCHHHHHHh
Confidence 8999988887665 48888888888999999985 788888887765
No 45
>COG3189 Uncharacterized conserved protein [Function unknown]
Probab=20.54 E-value=1.5e+02 Score=23.89 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=16.3
Q ss_pred CCCCCCCcccccccHHHHhccC
Q 029196 24 TERRGIPAAQFVEDVQTFLSQL 45 (197)
Q Consensus 24 ~~~rgIP~A~FIedVe~f~~~~ 45 (197)
.-||||++..+ .++-+++.-
T Consensus 26 lWPRGi~Ke~~--~~D~W~Kdi 45 (117)
T COG3189 26 LWPRGIKKEDL--ALDLWLKDI 45 (117)
T ss_pred cCCCCCChhhh--hHHHHHhhc
Confidence 45999999998 778888763
Done!