Query 029196
Match_columns 197
No_of_seqs 118 out of 208
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 14:39:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fxk_C Protein (prefoldin); ar 99.9 1.2E-25 4.2E-30 175.4 11.9 121 53-177 3-129 (133)
2 2zdi_C Prefoldin subunit alpha 99.9 5.6E-25 1.9E-29 175.9 8.0 123 50-177 8-139 (151)
3 2zqm_A Prefoldin beta subunit 94.1 0.32 1.1E-05 35.8 8.5 96 50-176 9-110 (117)
4 1fxk_A Prefoldin; archaeal pro 93.4 0.55 1.9E-05 34.0 8.7 94 49-173 3-102 (107)
5 3ci9_A Heat shock factor-bindi 75.5 2.5 8.6E-05 27.9 3.2 34 55-88 14-47 (48)
6 2yy0_A C-MYC-binding protein; 46.5 30 0.001 22.8 4.3 44 35-78 4-50 (53)
7 3swf_A CGMP-gated cation chann 42.2 26 0.00089 25.1 3.6 46 37-82 4-49 (74)
8 3swy_A Cyclic nucleotide-gated 41.3 31 0.0011 22.5 3.6 43 38-80 3-45 (46)
9 4dnd_A Syntaxin-10, SYN10; str 40.9 42 0.0015 25.8 5.0 45 48-92 35-94 (130)
10 2q6q_A Spindle POLE BODY compo 30.8 70 0.0024 22.7 4.3 38 51-88 24-61 (74)
11 2xp1_A SPT6; transcription, IW 28.6 1E+02 0.0034 24.8 5.5 51 88-142 23-82 (178)
12 3hh0_A Transcriptional regulat 24.9 1.2E+02 0.004 23.1 5.1 29 70-98 85-113 (146)
13 4dnd_A Syntaxin-10, SYN10; str 23.6 51 0.0017 25.3 2.8 40 146-186 70-112 (130)
14 1urf_A Protein kinase C-like 1 23.0 70 0.0024 23.2 3.2 24 143-166 43-66 (81)
15 3hsq_A Acyl-[acyl-carrier-prot 21.0 68 0.0023 26.0 3.2 68 27-96 183-250 (259)
16 3vmx_A Voltage-gated hydrogen 20.9 1.9E+02 0.0064 19.0 5.3 41 57-97 3-43 (48)
17 1q08_A Zn(II)-responsive regul 20.7 2.1E+02 0.0071 19.5 5.9 33 65-97 39-71 (99)
18 3qf7_D MRE11; ABC-ATPase, ATPa 20.6 68 0.0023 21.0 2.4 37 29-65 4-40 (50)
No 1
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=99.93 E-value=1.2e-25 Score=175.38 Aligned_cols=121 Identities=18% Similarity=0.269 Sum_probs=113.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEeecc
Q 029196 53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA 132 (197)
Q Consensus 53 l~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLGA 132 (197)
++.|++++++|+++..++.+++..|..+||++++++++|+.|.. .++.++.|+|++++|++|.|+++++||+|||+
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~----~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~ 78 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG----KDGSETLVPVGAGSFIKAELKDTSEVIMSVGA 78 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----CTTCEEEEEEETTEEEEEECCSTTEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----CCCCeEEEEcCCCcEEEEEECCCCEEEEEcCC
Confidence 57899999999999999999999999999999999999999975 35799999999999999999999999999999
Q ss_pred ceeeeeccCc------cchHHHHHhHHHHHHHHHHHHhhhcceeehhhhhh
Q 029196 133 NVMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTVARVY 177 (197)
Q Consensus 133 NVMlEY~ldE------~nl~~A~~~l~~~~eDL~fLRdQiTTtEVN~ARvy 177 (197)
|+|+||+++| ++++.++.+++.+++++.|+|+||++++--+...+
T Consensus 79 g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 79 GVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 99999999999999999999999999887665543
No 2
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=99.91 E-value=5.6e-25 Score=175.86 Aligned_cols=123 Identities=19% Similarity=0.218 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH---HhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCee
Q 029196 50 NSALAFLQERLQQYKLVEMKLLAQQRDL---QAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSV 126 (197)
Q Consensus 50 e~~l~~~qe~~~KYkfmE~~l~~~~~~L---~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V 126 (197)
++-++.+.+.+++|+++..++.+++..| ..+|||++++|+.|+.|.. ++.++.|+|++++|++|.|+++++|
T Consensus 8 ~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~-----~~~~ilvplg~~~yv~g~i~~~~~V 82 (151)
T 2zdi_C 8 NKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEE-----EKPEILVPIGAGSFLKGVIVDKNNA 82 (151)
T ss_dssp TTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-----SSCEEEEECSSSCEEEEECSCTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CCceEEEEcCCCeEEEEEECCCCEE
Confidence 3447899999999999999999999999 9999999999999998853 5689999999999999999999999
Q ss_pred EEeeccceeeeeccCc------cchHHHHHhHHHHHHHHHHHHhhhcceeehhhhhh
Q 029196 127 CLWLGANVMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTVARVY 177 (197)
Q Consensus 127 ~LWLGANVMlEY~ldE------~nl~~A~~~l~~~~eDL~fLRdQiTTtEVN~ARvy 177 (197)
++||||||||||+++| ++++.+..+++.+++++.|+++||+++++++..++
T Consensus 83 ~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 83 IVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp EEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred EEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999999999999999999999876
No 3
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=94.07 E-value=0.32 Score=35.75 Aligned_cols=96 Identities=20% Similarity=0.328 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEEe
Q 029196 50 NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLW 129 (197)
Q Consensus 50 e~~l~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~LW 129 (197)
+..+..|+.+.+++.- +.+++..|...+-+++.+++-+..| |+..+||.=
T Consensus 9 Q~~i~~~~~l~~~~~~----l~~q~~~l~~~~~e~~~~~~eL~~l--------------------------~~d~~vy~~ 58 (117)
T 2zqm_A 9 QAMLGQLESYQQQLQL----VVQQKQKVQLELTEAKKALDEIESL--------------------------PDDAVVYKT 58 (117)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHTS--------------------------CTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHcC--------------------------CCCcHhHHH
Confidence 3344444444444443 3445555555555555555554444 233356666
Q ss_pred eccceeeeeccCc------cchHHHHHhHHHHHHHHHHHHhhhcceeehhhhh
Q 029196 130 LGANVMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTVARV 176 (197)
Q Consensus 130 LGANVMlEY~ldE------~nl~~A~~~l~~~~eDL~fLRdQiTTtEVN~ARv 176 (197)
+| +|.|+-+.++ ++++.....++.++..+++++.++.-.+.++...
T Consensus 59 iG-~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 59 VG-TLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp ET-TEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hh-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67 8999999999 7788888888889999999999988777666543
No 4
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=93.43 E-value=0.55 Score=34.00 Aligned_cols=94 Identities=21% Similarity=0.292 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEecccceeeeeeCCCCeeEE
Q 029196 49 VNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCL 128 (197)
Q Consensus 49 ~e~~l~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~kk~~~e~~~t~F~LsD~lyakA~I~ptd~V~L 128 (197)
++..+..|+.+.+++.-+. +++..+...+-+++.+++-+..| |+..+||-
T Consensus 3 ~Q~~i~~f~~lq~~~~~l~----~q~~~l~~~~~e~~~~~~EL~~l--------------------------~~d~~vy~ 52 (107)
T 1fxk_A 3 VQHQLAQFQQLQQQAQAIS----VQKQTVEMQINETQKALEELSRA--------------------------ADDAEVYK 52 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHS--------------------------CTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcC--------------------------CCCchHHH
Confidence 4455556666655555444 45555566666666666655554 22334555
Q ss_pred eeccceeeeeccCc------cchHHHHHhHHHHHHHHHHHHhhhcceeehh
Q 029196 129 WLGANVMLEYSCDE------KNLENAKASLEVLIADLQFLRDQVTITQVTV 173 (197)
Q Consensus 129 WLGANVMlEY~ldE------~nl~~A~~~l~~~~eDL~fLRdQiTTtEVN~ 173 (197)
=+| +|.|+-|.++ ++++.....++.++..++.+++++.-++.++
T Consensus 53 ~iG-~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 53 SSG-NILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp EET-TEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh-HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 8999999999 7778888888888888889888887666554
No 5
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=75.51 E-value=2.5 Score=27.95 Aligned_cols=34 Identities=21% Similarity=0.512 Sum_probs=28.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHH
Q 029196 55 FLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCL 88 (197)
Q Consensus 55 ~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL 88 (197)
.|+++-.||.-|-.++..|...+-.+|-|+++++
T Consensus 14 LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 14 LLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 5666778899999999999999999999999876
No 6
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=46.54 E-value=30 Score=22.83 Aligned_cols=44 Identities=11% Similarity=0.113 Sum_probs=25.5
Q ss_pred cccHHHHhc--cCC-cCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 029196 35 VEDVQTFLS--QLD-LDVNSALAFLQERLQQYKLVEMKLLAQQRDLQ 78 (197)
Q Consensus 35 IedVe~f~~--~~~-~~~e~~l~~~qe~~~KYkfmE~~l~~~~~~L~ 78 (197)
++-|..+++ .|. .+++.+....+++-+||.-+...+..-+.+|.
T Consensus 4 lefIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 4 LDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp ------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344567776 554 58898888999999998877776666555543
No 7
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=42.18 E-value=26 Score=25.05 Aligned_cols=46 Identities=11% Similarity=0.209 Sum_probs=28.9
Q ss_pred cHHHHhccCCcCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccc
Q 029196 37 DVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIP 82 (197)
Q Consensus 37 dVe~f~~~~~~~~e~~l~~~qe~~~KYkfmE~~l~~~~~~L~~KIP 82 (197)
|+++-+..-+++++..=.+|--++..|.-....|.+|...|..++-
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555554322455555556777777788888777777777766543
No 8
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=41.28 E-value=31 Score=22.48 Aligned_cols=43 Identities=16% Similarity=0.303 Sum_probs=27.6
Q ss_pred HHHHhccCCcCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Q 029196 38 VQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAK 80 (197)
Q Consensus 38 Ve~f~~~~~~~~e~~l~~~qe~~~KYkfmE~~l~~~~~~L~~K 80 (197)
+++-+..-+++++..=.+|--++..|.-....|.+|...|..+
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444433223455555577777788888888888888777654
No 9
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=40.89 E-value=42 Score=25.76 Aligned_cols=45 Identities=20% Similarity=0.292 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHhHHHH---------------HHHHHHHHHHHHhccccHHHHHHHHH
Q 029196 48 DVNSALAFLQERLQQYKLV---------------EMKLLAQQRDLQAKIPDIEKCLDIVA 92 (197)
Q Consensus 48 ~~e~~l~~~qe~~~KYkfm---------------E~~l~~~~~~L~~KIPdikktL~~V~ 92 (197)
+|...+.+++.+|++|.-+ -..|......+...|-|+.+++.+|+
T Consensus 35 EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE 94 (130)
T 4dnd_A 35 EVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVE 94 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888889888532 33467778888999999999999886
No 10
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=30.78 E-value=70 Score=22.73 Aligned_cols=38 Identities=37% Similarity=0.455 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHH
Q 029196 51 SALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCL 88 (197)
Q Consensus 51 ~~l~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL 88 (197)
.++..|+-.+-||.-|-..|+.+..+++.+|-++.|-+
T Consensus 24 vlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~ 61 (74)
T 2q6q_A 24 KIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKL 61 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhc
Confidence 45678889999999999999999999999998877643
No 11
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=28.55 E-value=1e+02 Score=24.77 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=38.0
Q ss_pred HHHHHHHHhhhc--------CCCceeEEEEecccceeeeeeCCCCeeEEeeccceeeee-ccCc
Q 029196 88 LDIVATLQAKKE--------GGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEY-SCDE 142 (197)
Q Consensus 88 L~~V~~L~~kk~--------~~e~~~t~F~LsD~lyakA~I~ptd~V~LWLGANVMlEY-~ldE 142 (197)
.++.++|+.+.+ +++.+...|.++|++|....|...++. ||+|-. +| +|||
T Consensus 23 ~qAe~~L~~~~G~~liRPSsk~~~ltit~Kv~d~~~~Hi~I~E~~k~-l~ig~~---~fedLDE 82 (178)
T 2xp1_A 23 TESENYLRSSTDDFLIRKGSRHGYCVLVIKFASDVFVHMKIEEHSEH-YTCSNK---HFEDIDE 82 (178)
T ss_dssp HHHHHHHHHSSCCEEEEECSSTTEEEEEEEEETTEEEEEEEEECSSC-EEETTE---EESSHHH
T ss_pred HHHHHHHhcCCCCEEEeecCCCCcEEEEEEECCCcEEEEEEEECCCE-EEECCc---EECCHHH
Confidence 456667766521 233599999999999999999887774 588875 77 6777
No 12
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=24.94 E-value=1.2e+02 Score=23.13 Aligned_cols=29 Identities=24% Similarity=0.193 Sum_probs=22.2
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhhh
Q 029196 70 LLAQQRDLQAKIPDIEKCLDIVATLQAKK 98 (197)
Q Consensus 70 l~~~~~~L~~KIPdikktL~~V~~L~~kk 98 (197)
|..++..|..+|-+++..++.++.+...-
T Consensus 85 L~~q~~~L~~~i~~l~~~l~~l~~~i~~~ 113 (146)
T 3hh0_A 85 MHFQREVLLAEQERIAKVLSHMDEMTKKF 113 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55667788888888888888888877653
No 13
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=23.61 E-value=51 Score=25.31 Aligned_cols=40 Identities=15% Similarity=0.341 Sum_probs=30.8
Q ss_pred HHHHHhHHHHHHHHHHHHhhhcceeehhhhhhhhh---HHhhHH
Q 029196 146 ENAKASLEVLIADLQFLRDQVTITQVTVARVYNWD---VHQRRI 186 (197)
Q Consensus 146 ~~A~~~l~~~~eDL~fLRdQiTTtEVN~ARvyNwd---V~rrr~ 186 (197)
...+..|..+++||+=|.+=|.+.|-|-+|. +-+ +.+||.
T Consensus 70 ~EL~~~l~sie~dLeDLe~sI~ivE~np~kF-~l~~~Ei~~Rr~ 112 (130)
T 4dnd_A 70 NELRNGLRSIEWDLEDLEETIGIVEANPGKF-KLPAGDLQERKV 112 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHhc-CCCHHHHHHHHH
Confidence 3456678889999999999999999888774 444 556654
No 14
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=23.01 E-value=70 Score=23.19 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=22.5
Q ss_pred cchHHHHHhHHHHHHHHHHHHhhh
Q 029196 143 KNLENAKASLEVLIADLQFLRDQV 166 (197)
Q Consensus 143 ~nl~~A~~~l~~~~eDL~fLRdQi 166 (197)
+=|+.|++-|..-..-++|||-||
T Consensus 43 KlLaeAQqmL~DSk~KIe~lRmqI 66 (81)
T 1urf_A 43 KLLLTAQQMLQDSKTKIDIIRMQL 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999998
No 15
>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*
Probab=21.00 E-value=68 Score=25.98 Aligned_cols=68 Identities=10% Similarity=0.036 Sum_probs=41.1
Q ss_pred CCCCcccccccHHHHhccCCcCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHh
Q 029196 27 RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQA 96 (197)
Q Consensus 27 rgIP~A~FIedVe~f~~~~~~~~e~~l~~~qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~ 96 (197)
.|.|.-..--++. -++..+-+. ..+..+++.|..+-.-...+.+.+..|++++|+....-.++.|+..
T Consensus 183 ~G~pa~~~~~~~~-g~~r~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 250 (259)
T 3hsq_A 183 DGNPSTVVGLNSV-GMKRAGFSP-EVRNAIKHAYKVIYHSGISTRKALDELEASGNLIEQVKYIIKFFRD 250 (259)
T ss_dssp ETTTTEEEEECHH-HHHHTTCCH-HHHHHHHHHHHHHHSSSSCHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred eccCcEEEeeccc-ceeeCCCCH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 4666433323332 333332232 2345555555555433456888899999999888888888999853
No 16
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=20.87 E-value=1.9e+02 Score=19.01 Aligned_cols=41 Identities=12% Similarity=0.282 Sum_probs=33.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh
Q 029196 57 QERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAK 97 (197)
Q Consensus 57 qe~~~KYkfmE~~l~~~~~~L~~KIPdikktL~~V~~L~~k 97 (197)
+..++|||-+-.+|.++...|...--+.+.-++-++.|-++
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 45689999999999999999998888888777777666554
No 17
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=20.74 E-value=2.1e+02 Score=19.51 Aligned_cols=33 Identities=9% Similarity=0.175 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh
Q 029196 65 LVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAK 97 (197)
Q Consensus 65 fmE~~l~~~~~~L~~KIPdikktL~~V~~L~~k 97 (197)
-+..-|..++..+..+|-+++..++.+..+...
T Consensus 39 ~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~ 71 (99)
T 1q08_A 39 ESKGIVQERLQEVEARIAELQSMQRSLQRLNDA 71 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888899999999999999999888765
No 18
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=20.63 E-value=68 Score=20.97 Aligned_cols=37 Identities=19% Similarity=0.304 Sum_probs=27.7
Q ss_pred CCcccccccHHHHhccCCcCHHHHHHHHHHHHHhHHH
Q 029196 29 IPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKL 65 (197)
Q Consensus 29 IP~A~FIedVe~f~~~~~~~~e~~l~~~qe~~~KYkf 65 (197)
|.+-.|.|=..+|++....+-+.+++.|+|++..-|-
T Consensus 4 ~~kld~felfkey~k~r~~~he~l~k~~~ell~evkk 40 (50)
T 3qf7_D 4 LDKLDYFELFKEYLKKREENHEKLLKILDELLDEVKK 40 (50)
T ss_dssp ---CCHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5566788888999988767899999999998865543
Done!