BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029197
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SPV|A Chain A, Crystal Structure Of The Putative Phosphatase Of
Escherichia Coli, Northeast Structural Genomoics Target
Er58
Length = 184
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 65/101 (64%), Gaps = 3/101 (2%)
Query: 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI 60
+ GGGG DGAI RAAGP LL+AC +V + CPTG A IT LPA V+HTVGP+
Sbjct: 28 LXGGGGVDGAIHRAAGPALLDACLKVRQQQG--DCPTGHAVITLAGDLPAKAVVHTVGPV 85
Query: 61 Y-GVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLY 100
+ G N + L+ AY NSL L AN+ +AFPAIS G+Y
Sbjct: 86 WRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVY 126
>pdb|2X47|A Chain A, Crystal Structure Of Human Macrod1
Length = 235
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 74/123 (60%), Gaps = 10/123 (8%)
Query: 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI 60
+LGGGG DG I RAAGP L + C + C TG+A+IT G++LPA +VIHTVGPI
Sbjct: 87 LLGGGGVDGCIHRAAGPLLTDECRTLQS------CKTGKAKITGGYRLPAKYVIHTVGPI 140
Query: 61 -YGV-TINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGL--YWCTLFCLQMISTIFGW 116
YG + + A LRS Y +SL L + ++ +AFP IS G+ Y C +++T+ W
Sbjct: 141 AYGEPSASQAAELRSCYLSSLDLLLEHRLRSVAFPCISTGVFGYPCEAAAEIVLATLREW 200
Query: 117 RRQ 119
Q
Sbjct: 201 LEQ 203
>pdb|3Q6Z|A Chain A, Human Parp14 (Artd8)-Macro Domain 1 In Complex With
Adenosine-5- Diphosphoribose
Length = 214
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Query: 5 GGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVT 64
GG A+ +AAGPEL C ++ V R G A I+ KLP HVIH VGP +
Sbjct: 66 GGLAAALSKAAGPELQADCDQI--VKREGRLLPGNATISKAGKLPYHHVIHAVGPRWSGY 123
Query: 65 INPEAS--LRSAYKNSLSLAKANNIQYIAFPAISCGLY-----WCTLFCLQMISTIFGWR 117
P LR A + SL LA+ + IA PAIS G++ C + I F ++
Sbjct: 124 EAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQFK 183
Query: 118 RQGNC 122
+ G+C
Sbjct: 184 KDGHC 188
>pdb|2DX6|A Chain A, Crystal Structure Of Conserved Hypothetical Protein,
Ttha0132 From Thermus Thermophilus Hb8
pdb|2DX6|B Chain B, Crystal Structure Of Conserved Hypothetical Protein,
Ttha0132 From Thermus Thermophilus Hb8
Length = 159
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 21/129 (16%)
Query: 4 GGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGV 63
G G GAI R GP + E C R+ ++ GEA +T LP +VIH + G
Sbjct: 30 GAGVAGAILRKGGPSIQEECDRIGKI------RVGEAAVTGAGNLPVRYVIHAA--VLGD 81
Query: 64 TINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS------------ 111
++R A K++L A ++ +AFP + G+ + + +
Sbjct: 82 EPASLETVRKATKSALEKAVELGLKTVAFPLLGTGVGGLPVEAVARVXLEEIKKAPDTLE 141
Query: 112 -TIFGWRRQ 119
T++G+R +
Sbjct: 142 VTLYGYREE 150
>pdb|1VHU|A Chain A, Crystal Structure Of A Putative Phosphoesterase
Length = 211
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 20/102 (19%)
Query: 38 GEARITPGFKLPA---SHVIHTVGPIYGVTINPE--ASLRSAYKNSLSLAKANNIQYIAF 92
GE +TP L +V HTVGPI + E L A+ L A+ ++ IAF
Sbjct: 87 GEVVVTPAXNLEERGIKYVFHTVGPICSGXWSEELKEKLYKAFLGPLEKAEEXGVESIAF 146
Query: 93 PAISCGLYWCTLFCLQMISTIFGWRRQGNCCLFHLEDVKNFE 134
PA+S G+Y C L +++ T LE VKNF+
Sbjct: 147 PAVSAGIYGCDL--EKVVETF-------------LEAVKNFK 173
>pdb|1HJZ|A Chain A, Crystal Structure Of Af1521 Protein Containing A Macroh2a
Domain
pdb|1HJZ|B Chain B, Crystal Structure Of Af1521 Protein Containing A Macroh2a
Domain
Length = 192
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 46/102 (45%), Gaps = 20/102 (19%)
Query: 38 GEARITPGFKLPA---SHVIHTVGPIYGVTINPE--ASLRSAYKNSLSLAKANNIQYIAF 92
GE +TP L +V HTVGPI + E L A+ L A+ ++ IAF
Sbjct: 78 GEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESIAF 137
Query: 93 PAISCGLYWCTLFCLQMISTIFGWRRQGNCCLFHLEDVKNFE 134
PA+S G+Y C L+ + F LE VKNF+
Sbjct: 138 PAVSAGIYGCD---LEKVVETF------------LEAVKNFK 164
>pdb|2BFR|A Chain A, The Macro Domain Is An Adp-Ribose Binding Module
pdb|2BFQ|A Chain A, Macro Domains Are Adp-Ribose Binding Molecules
Length = 192
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 20/102 (19%)
Query: 38 GEARITPGFKLPA---SHVIHTVGPIYGVTINPE--ASLRSAYKNSLSLAKANNIQYIAF 92
GE +TP L +V HTVGPI + E L A+ L A+ ++ IAF
Sbjct: 78 GEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESIAF 137
Query: 93 PAISCGLYWCTLFCLQMISTIFGWRRQGNCCLFHLEDVKNFE 134
PA+S G+Y C L +++ T LE VKNF+
Sbjct: 138 PAVSAGIYGCDL--EKVVETF-------------LEAVKNFK 164
>pdb|1YD9|A Chain A, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|B Chain B, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|C Chain C, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|D Chain D, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1
Length = 193
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 4 GGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGV 63
GG + + G E +EA + + + A ++ G LPA VIH P++G
Sbjct: 47 GGEVGSTLEKKGGKEFVEAVLELRKKNGPLEVAG--AAVSAGHGLPAKFVIHCNSPVWG- 103
Query: 64 TINPEASLRSAYKNSLSLAKANNIQYIAFPAISCG 98
+ E L KN L+LA ++ IAFP+I G
Sbjct: 104 SDKCEELLEKTVKNCLALADDRKLKSIAFPSIGSG 138
>pdb|1ZR3|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|C Chain C, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|D Chain D, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|2FXK|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form A)
pdb|2FXK|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form A)
pdb|3IID|A Chain A, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form A)
pdb|3IIF|A Chain A, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
pdb|3IIF|B Chain B, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
pdb|3IIF|C Chain C, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
Length = 211
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 4 GGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGV 63
GG + + G E +EA + + + A ++ G LPA VIH P++G
Sbjct: 65 GGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAG--AAVSAGHGLPAKFVIHCNSPVWGA 122
Query: 64 TINPEASLRSAYKNSLSLAKANNIQYIAFPAISCG 98
E L KN L+LA ++ IAFP+I G
Sbjct: 123 D-KCEELLEKTVKNCLALADDKKLKSIAFPSIGSG 156
>pdb|4GVW|A Chain A, Three-Dimensional Structure Of The De Novo Designed Serine
Hydrolase 2bfq_3, Northeast Structural Genomics
Consortium (Nesg) Target Or248
Length = 199
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 20/102 (19%)
Query: 38 GEARITPGFKLPA---SHVIHTVGPIYGVTINPE--ASLRSAYKNSLSLAKANNIQYIAF 92
GE +TP L +V HTVGPI + E L A+ L A+ ++ IAF
Sbjct: 78 GEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESIAF 137
Query: 93 PAISCGLYWCTLFCLQMISTIFGWRRQGNCCLFHLEDVKNFE 134
PA+S G+Y C +++ T LE VKNF+
Sbjct: 138 PAVSAGIYGCD--AEKVVET-------------SLEAVKNFK 164
>pdb|3V45|A Chain A, Crystal Structure Of De Novo Designed Serine Hydrolase
Osh55, Northeast Structural Genomics Consortium Target
Or130
Length = 167
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 4 GGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGV 63
G G GAI R GP + E C R+ ++ GEA +T LP +VIH + G
Sbjct: 30 GAGVAGAILRKGGPSIQEECDRIGKI------RVGEAAVTGAGNLPVRYVIHAA--VLGD 81
Query: 64 TINPEASLRSAYKNSLSLAKANNIQYIAFPAISC 97
++R A K++L A ++ +AF A+
Sbjct: 82 EPASLETVRKATKSALEKAVELGLKTVAFTALGA 115
>pdb|4ETJ|A Chain A, Crystal Structure Of E6h Variant Of De Novo Designed
Serine Hydrolase Osh55, Northeast Structural Genomics
Consortium (Nesg) Target Or185
Length = 167
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 4 GGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGV 63
G G GAI R GP + E C R+ ++ GEA +T LP +VIH + G
Sbjct: 30 GAGVAGAILRKGGPSIQEECDRIGKI------RVGEAAVTGAGNLPVRYVIHAA--VLGD 81
Query: 64 TINPEASLRSAYKNSLSLAKANNIQYIAFPAISC 97
++R A K++L A ++ +AF A+
Sbjct: 82 EPASLETVRKATKSALEKAVELGLKTVAFTALGA 115
>pdb|4ESS|A Chain A, Crystal Structure Of E6dL155R VARIANT OF DE NOVO DESIGNED
SERINE Hydrolase Osh55, Northeast Structural Genomics
Consortium (Nesg) Target Or187
Length = 167
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 4 GGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGV 63
G G GAI R GP + E C R+ ++ GEA +T LP +VIH + G
Sbjct: 30 GAGVAGAILRKGGPSIQEECDRIGKI------RVGEAAVTGAGNLPVRYVIHAA--VLGD 81
Query: 64 TINPEASLRSAYKNSLSLAKANNIQYIAFPAISC 97
++R A K++L A ++ +AF A+
Sbjct: 82 EPASLETVRKATKSALEKAVELGLKTVAFTALGA 115
>pdb|4GVV|A Chain A, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|B Chain B, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|C Chain C, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|D Chain D, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
Length = 167
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 4 GGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGV 63
G G GAI R GP + E C R+ ++ GEA +T LP +VIH + G
Sbjct: 30 GAGVAGAILRKGGPSIQEECDRIGKI------RVGEAAVTGAGNLPVRYVIHAA--VLGD 81
Query: 64 TINPEASLRSAYKNSLSLAKANNIQYIAFPAISC 97
++R A K++L A ++ +AF A+
Sbjct: 82 EPASLETVRKATKSALEKAVELGLKTVAFTALGA 115
>pdb|4ETK|A Chain A, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO
DESIGNED Serine Hydrolase, Northeast Structural Genomics
Consortium (Nesg) Target Or186
pdb|4ETK|B Chain B, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO
DESIGNED Serine Hydrolase, Northeast Structural Genomics
Consortium (Nesg) Target Or186
Length = 167
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 4 GGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGV 63
G G GAI R GP + E C R+ ++ GEA +T LP +VIH + G
Sbjct: 30 GAGVAGAILRKGGPSIQEECDRIGKI------RVGEAAVTGAGNLPVRYVIHAA--VLGD 81
Query: 64 TINPEASLRSAYKNSLSLAKANNIQYIAFPAISC 97
++R A K++L A ++ +AF A+
Sbjct: 82 EPASLETVRKATKSALEKAVELGLKTVAFTALGA 115
>pdb|1ZR5|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.2
pdb|1ZR5|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.2
Length = 214
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 11 IRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEAS 70
+ + G E +EA + + + A ++ G LPA VIH P++G E
Sbjct: 75 LEKKGGKEFVEAVLELRKKNGPLEVAG--AAVSAGHGLPAKFVIHCNSPVWGAD-KCEEL 131
Query: 71 LRSAYKNSLSLAKANNIQYIAFPAISCG 98
L KN L+LA ++ IAFP+I G
Sbjct: 132 LEKTVKNCLALADDKKLKSIAFPSIGSG 159
>pdb|3GQE|A Chain A, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus
pdb|3GQE|B Chain B, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus
pdb|3GQO|A Chain A, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|B Chain B, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|C Chain C, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|D Chain D, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
Length = 168
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 38 GEARITPGFKLPASHVIHTVGPIYGVT--INPEASLRSAYKNSLSLAKANNIQYIAFPAI 95
G+AR+ G A H+IH VGP + + + L AY++ + NN + +A P +
Sbjct: 55 GKARLVKG---AAKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLL 111
Query: 96 SCGLY 100
S G++
Sbjct: 112 STGIF 116
>pdb|3Q71|A Chain A, Human Parp14 (Artd8) - Macro Domain 2 In Complex With
Adenosine-5- Diphosphoribose
Length = 221
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 15/145 (10%)
Query: 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI 60
+L G ++ AGPEL E + VG G+ G T + L +V+H V P
Sbjct: 65 VLSRGPLSKSLLEKAGPELQE---ELDTVGQGVAVSMGTVLKTSSWNLDCRYVLHVVAPE 121
Query: 61 Y--GVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGL--YWCTLFCLQMISTIFGW 116
+ G T + + + + + + ++ +++ IAFPAI G + +F +IS +F +
Sbjct: 122 WRNGSTSSLKI-MEDIIRECMEITESLSLKSIAFPAIGTGNLGFPKNIFAELIISEVFKF 180
Query: 117 RRQGNC-------CLFHLEDVKNFE 134
+ L H D +N +
Sbjct: 181 SSKNQLKTLQEVHFLLHPSDHENIQ 205
>pdb|4GUA|A Chain A, Alphavirus P23pro-Zbd
pdb|4GUA|B Chain B, Alphavirus P23pro-Zbd
pdb|4GUA|C Chain C, Alphavirus P23pro-Zbd
Length = 670
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 37 TGEARITPGFKLPASHVIHTVGPIYGVTINPEAS----LRSAYKNSLSLAKANNIQYIAF 92
TG AR+T VIH VGP + +PEA L++AY L +NI+ +A
Sbjct: 394 TGTARMTVCL---GKKVIHAVGPDF--RKHPEAEALKLLQNAYHAVADLVNEHNIKSVAI 448
Query: 93 PAISCGLY 100
P +S G+Y
Sbjct: 449 PLLSTGIY 456
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 30.8 bits (68), Expect = 0.50, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 136 GTSSKLMS-FEQLVYQSLDQKIRGILQEIGLQNAQIMS 172
GT S L+S F LV QSLDQ+ G ++ GL++ +++S
Sbjct: 498 GTRSILLSPFNSLVGQSLDQQQLGFVRTKGLRDMRMLS 535
>pdb|4HAM|A Chain A, Crystal Structure Of Transcriptional Antiterminator From
Listeria Monocytogenes Egd-E
Length = 134
Score = 30.4 bits (67), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 133 FEVGTSSKLMSFEQLVYQSLDQKIRGILQEIGLQNAQIMSICRFS 177
F + T S+L +EQ+V + +Q ++G+LQE +I+SI F+
Sbjct: 5 FTINTKSQLPIYEQIVQKIKEQVVKGVLQE----GEKILSIREFA 45
>pdb|3EWO|A Chain A, Ibv Nsp3 Adrp Domain
pdb|3EWO|B Chain B, Ibv Nsp3 Adrp Domain
pdb|3EWP|A Chain A, Complex Of Substrate Adp-Ribose With Ibv Nsp3 Adrp Domain
pdb|3EWP|B Chain B, Complex Of Substrate Adp-Ribose With Ibv Nsp3 Adrp Domain
Length = 177
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 10/100 (10%)
Query: 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI 60
M GGG AI GP+ +E C + + + +TP F V + VGP
Sbjct: 48 MSHGGGVAKAIADFCGPDFVEYC-----ADYVKKHGPQQKLVTPSFVKGIQCVNNVVGPR 102
Query: 61 YGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLY 100
+G + N L +AYK+ L N + P +S G++
Sbjct: 103 HGDS-NLREKLVAAYKSVLVGGVVNYV----VPVLSSGIF 137
>pdb|1DAB|A Chain A, The Structure Of Bordetella Pertussis Virulence Factor
P.69 Pertactin
Length = 539
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 18 ELLEACYRVPEVGFGIRCPTGEARIT-PGFKLPASH--VIHTVG 58
EL ++ PE+G IR G AR+T PG L A H VI T G
Sbjct: 272 ELAQSIVEAPELGAAIRVGRG-ARVTVPGGSLSAPHGNVIETGG 314
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.141 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,675,409
Number of Sequences: 62578
Number of extensions: 212650
Number of successful extensions: 600
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 561
Number of HSP's gapped (non-prelim): 26
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)