Query 029197
Match_columns 197
No_of_seqs 124 out of 1290
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 09:03:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029197.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029197hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02904 Macro_H2A_like Macro d 100.0 1.7E-39 3.6E-44 266.2 16.1 139 1-153 45-185 (186)
2 cd02908 Macro_Appr_pase_like M 100.0 5.3E-36 1.1E-40 240.8 17.3 137 1-156 25-164 (165)
3 cd02907 Macro_Af1521_BAL_like 100.0 7.9E-36 1.7E-40 241.8 16.9 144 1-158 27-174 (175)
4 PRK00431 RNase III inhibitor; 100.0 1.6E-35 3.4E-40 240.3 16.8 145 1-160 28-175 (177)
5 PRK04143 hypothetical protein; 100.0 1.8E-35 3.9E-40 253.9 17.1 143 3-159 115-262 (264)
6 cd02905 Macro_GDAP2_like Macro 100.0 1.3E-34 2.7E-39 227.9 13.3 111 1-117 26-140 (140)
7 COG2110 Predicted phosphatase 100.0 4.2E-33 9.2E-38 226.8 15.3 146 1-160 28-176 (179)
8 cd02906 Macro_1 Macro domain, 100.0 2.9E-32 6.4E-37 215.9 12.9 110 3-113 32-146 (147)
9 cd02903 Macro_BAL_like Macro d 100.0 6.7E-31 1.4E-35 205.5 13.2 108 1-116 27-137 (137)
10 PF01661 Macro: Macro domain; 100.0 7E-28 1.5E-32 180.9 10.6 109 1-111 8-118 (118)
11 cd03330 Macro_2 Macro domain, 100.0 2.4E-27 5.1E-32 183.9 13.6 104 1-111 25-128 (133)
12 KOG2633 Hismacro and SEC14 dom 99.9 1.8E-27 3.8E-32 195.6 12.2 141 1-158 52-195 (200)
13 cd02900 Macro_Appr_pase Macro 99.9 1.1E-26 2.3E-31 190.6 13.1 116 1-116 54-185 (186)
14 smart00506 A1pp Appr-1"-p proc 99.9 1.9E-23 4.2E-28 160.1 12.6 107 1-111 25-133 (133)
15 cd02749 Macro Macro domain, a 99.9 3.2E-22 6.9E-27 156.2 13.0 108 1-111 26-142 (147)
16 PRK13341 recombination factor 99.9 3E-24 6.4E-29 206.3 0.2 149 1-163 504-709 (725)
17 cd02901 Macro_Poa1p_like Macro 99.7 5.5E-17 1.2E-21 126.4 12.1 104 1-111 26-133 (140)
18 PHA02595 tk.4 hypothetical pro 99.4 1.5E-12 3.3E-17 103.9 12.0 108 1-113 29-140 (154)
19 PF14519 Macro_2: Macro-like d 98.8 1.9E-08 4.2E-13 87.0 9.7 112 3-118 82-215 (280)
20 cd03331 Macro_Poa1p_like_SNF2 97.7 0.00065 1.4E-08 54.3 11.0 104 3-111 32-145 (152)
21 TIGR02452 conserved hypothetic 97.7 0.00021 4.5E-09 62.0 8.5 89 53-153 164-265 (266)
22 PF10154 DUF2362: Uncharacteri 96.7 0.019 4E-07 54.1 11.0 122 34-163 371-505 (510)
23 COG4295 Uncharacterized protei 95.8 0.077 1.7E-06 45.0 9.0 79 68-159 199-281 (285)
24 PRK14827 undecaprenyl pyrophos 79.4 5.8 0.00013 35.1 6.2 41 71-111 96-136 (296)
25 PF01255 Prenyltransf: Putativ 78.4 6.9 0.00015 32.9 6.2 46 73-118 25-71 (223)
26 cd00475 CIS_IPPS Cis (Z)-Isopr 77.6 7.3 0.00016 33.0 6.0 47 72-118 30-77 (221)
27 PRK14842 undecaprenyl pyrophos 77.4 7.4 0.00016 33.4 6.1 49 70-118 36-85 (241)
28 KOG1602 Cis-prenyltransferase 76.3 9.5 0.00021 33.2 6.4 40 72-111 66-105 (271)
29 PRK14840 undecaprenyl pyrophos 76.2 8 0.00017 33.4 6.0 47 72-118 52-99 (250)
30 PRK14837 undecaprenyl pyrophos 76.0 7.7 0.00017 33.1 5.8 49 70-118 34-83 (230)
31 PRK14833 undecaprenyl pyrophos 75.6 9.5 0.00021 32.5 6.3 47 72-118 34-81 (233)
32 TIGR00055 uppS undecaprenyl di 74.4 10 0.00022 32.2 6.1 47 72-118 29-76 (226)
33 PRK14829 undecaprenyl pyrophos 73.6 11 0.00024 32.4 6.2 41 71-111 43-83 (243)
34 PRK14839 undecaprenyl pyrophos 71.9 13 0.00027 32.0 6.1 48 71-118 38-86 (239)
35 PRK14841 undecaprenyl pyrophos 71.5 13 0.00027 31.8 6.0 47 70-116 31-78 (233)
36 PRK14838 undecaprenyl pyrophos 70.6 16 0.00034 31.4 6.4 49 70-118 38-87 (242)
37 PRK14834 undecaprenyl pyrophos 70.1 16 0.00034 31.5 6.4 48 71-118 43-91 (249)
38 PRK14831 undecaprenyl pyrophos 69.8 14 0.0003 31.9 5.9 42 70-111 48-89 (249)
39 PRK14832 undecaprenyl pyrophos 66.1 20 0.00044 31.0 6.2 49 70-118 46-95 (253)
40 PRK14835 undecaprenyl pyrophos 66.0 29 0.00062 30.4 7.2 48 71-118 70-118 (275)
41 PRK10240 undecaprenyl pyrophos 64.0 24 0.00051 30.1 6.2 47 72-118 23-70 (229)
42 PHA00684 hypothetical protein 62.5 25 0.00054 27.3 5.5 45 67-111 54-98 (128)
43 PTZ00349 dehydrodolichyl dipho 60.9 29 0.00062 31.1 6.4 42 70-111 47-88 (322)
44 PHA03033 hypothetical protein; 59.0 16 0.00035 28.5 3.9 50 1-62 30-80 (142)
45 PRK14828 undecaprenyl pyrophos 57.4 55 0.0012 28.3 7.4 47 72-118 57-104 (256)
46 PRK14836 undecaprenyl pyrophos 53.3 35 0.00076 29.5 5.5 49 68-116 40-89 (253)
47 KOG1502 Flavonol reductase/cin 47.0 41 0.0009 30.2 5.1 45 50-94 79-128 (327)
48 PLN02214 cinnamoyl-CoA reducta 46.2 37 0.00081 29.7 4.7 44 50-93 82-125 (342)
49 PRK14830 undecaprenyl pyrophos 45.7 66 0.0014 27.7 6.0 44 68-111 48-91 (251)
50 cd06155 eu_AANH_C_1 A group of 44.6 69 0.0015 23.0 5.3 49 106-163 27-76 (101)
51 PF01073 3Beta_HSD: 3-beta hyd 42.4 73 0.0016 27.3 5.9 43 50-92 67-113 (280)
52 KOG4506 Uncharacterized conser 37.1 42 0.00091 31.1 3.6 65 34-98 416-483 (598)
53 PRK06052 5-methyltetrahydropte 34.4 1.3E+02 0.0028 27.3 6.3 44 68-111 141-187 (344)
54 COG0020 UppS Undecaprenyl pyro 33.7 1.6E+02 0.0036 25.2 6.6 43 69-111 43-85 (245)
55 cd06154 YjgF_YER057c_UK114_lik 33.1 1.3E+02 0.0028 22.2 5.3 43 112-163 52-94 (119)
56 COG2388 Predicted acetyltransf 32.8 67 0.0015 23.8 3.6 41 51-94 40-80 (99)
57 PLN02657 3,8-divinyl protochlo 32.4 1.1E+02 0.0024 27.5 5.6 45 49-93 136-180 (390)
58 KOG3716 Carnitine O-acyltransf 32.2 88 0.0019 31.0 5.1 58 67-124 517-578 (764)
59 CHL00194 ycf39 Ycf39; Provisio 30.7 1.2E+02 0.0026 26.0 5.4 43 50-92 65-107 (317)
60 PTZ00325 malate dehydrogenase; 29.7 1.4E+02 0.003 26.5 5.7 43 50-92 77-122 (321)
61 PF13460 NAD_binding_10: NADH( 27.2 97 0.0021 23.8 3.9 36 49-92 60-95 (183)
62 PF02807 ATP-gua_PtransN: ATP: 26.7 60 0.0013 22.9 2.3 24 140-163 49-72 (76)
63 PLN02662 cinnamyl-alcohol dehy 25.2 2.2E+02 0.0048 24.0 6.0 44 50-93 77-125 (322)
64 TIGR03610 RutC pyrimidine util 24.3 1.9E+02 0.0042 21.7 5.0 37 126-165 66-102 (127)
65 TIGR02810 agaZ_gatZ D-tagatose 24.0 6E+02 0.013 23.7 10.8 105 58-167 89-211 (420)
66 cd06153 YjgF_YER057c_UK114_lik 23.9 2.4E+02 0.0052 20.9 5.3 24 140-163 68-91 (114)
67 PRK15181 Vi polysaccharide bio 23.5 1.3E+02 0.0028 26.2 4.4 45 50-94 91-140 (348)
68 PRK02866 cyanate hydratase; Va 22.4 1.5E+02 0.0032 23.6 4.0 32 80-111 23-54 (147)
69 PLN02986 cinnamyl-alcohol dehy 22.2 2.4E+02 0.0053 23.9 5.7 44 50-93 78-126 (322)
70 PF06437 ISN1: IMP-specific 5' 20.4 67 0.0014 29.7 1.9 66 46-111 25-110 (408)
71 COG1252 Ndh NADH dehydrogenase 20.2 5E+02 0.011 24.0 7.5 68 42-111 92-175 (405)
No 1
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=100.00 E-value=1.7e-39 Score=266.25 Aligned_cols=139 Identities=21% Similarity=0.255 Sum_probs=127.5
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCCCcHHHHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLS 80 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~~~~~~L~~~~~~~L~ 80 (197)
|.++|||++||+++||++|++||++..+. + +++++|++++|++|+||||||||+|+|.|+.+ .+++.|++||++||+
T Consensus 45 L~~ggGV~~AI~~aaG~~l~~ec~~~~~~-~-g~~~~G~~~iT~a~~Lp~k~VIHtVgP~~~~~-~~~~~L~~~~~~~L~ 121 (186)
T cd02904 45 IDLKGEVGNALEKKGGKEFVEAVKELRKS-N-GPLEIAGAAVSQAHGLPAKFVIHCHSPQWGSD-KCEEQLEKTVKNCLA 121 (186)
T ss_pred cCCCCcHhHHHHHHcCHHHHHHHHHHHHh-c-CCCCCCCEEEccCCCCCCCEEEEeCCCCCCCC-chHHHHHHHHHHHHH
Confidence 67999999999999999999999988632 3 49999999999999999999999999999764 457899999999999
Q ss_pred HHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHH
Q 029197 81 LAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLD 153 (197)
Q Consensus 81 ~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~ 153 (197)
.|++++++|||||+||||++|||++++|++| +|.+|+++ .+++++++| +||++|+++++.|.
T Consensus 122 ~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~l~~-----~~~~~l~~I------~fv~~~~~~~~~y~ 185 (186)
T cd02904 122 AAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSYFVS-----TMSSSIKQI------YFVLFDSESIGIYV 185 (186)
T ss_pred HHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHh-----cCCCCccEE------EEEECCHHHHHHhh
Confidence 9999999999999999999999999999988 99999984 246789999 99999999999985
No 2
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=100.00 E-value=5.3e-36 Score=240.84 Aligned_cols=137 Identities=45% Similarity=0.740 Sum_probs=128.1
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCC-CcHHHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTI-NPEASLRSAYKNSL 79 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~-~~~~~L~~~~~~~L 79 (197)
|.++|||++||+++||+++++||++.. ++++|++++|++|+|+|+||||+|+|.|.... ++.+.|+++|+++|
T Consensus 25 l~~~ggv~~ai~~~~G~~l~~e~~~~~------~~~~G~~v~T~~~~l~~~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L 98 (165)
T cd02908 25 LLGGGGVDGAIHRAAGPELLEECRELR------GCPTGEAVITSGYNLPAKYVIHTVGPVWRGGQHNEAELLASCYRNSL 98 (165)
T ss_pred ccCCCcHHHHHHHHhCHHHHHHHHHhC------CCCCCCEEEeeCCCCCCCEEEEEcCCcccCCCCcHHHHHHHHHHHHH
Confidence 579999999999999999999999986 67999999999999999999999999998753 46899999999999
Q ss_pred HHHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHHHHH
Q 029197 80 SLAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKI 156 (197)
Q Consensus 80 ~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~ 156 (197)
+.|++++++|||||+||||++|||++++|++| ++++|++ . .+.+++| +||++|+++++.|.+++
T Consensus 99 ~~a~~~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai~~fl~------~-~~~l~~V------~~v~~~~~~~~~f~~~l 164 (165)
T cd02908 99 ELARENGLRSIAFPAISTGVYGYPLDEAARIALKTVREFLE------E-HDAIERV------IFVCFSEEDYEIYEKAL 164 (165)
T ss_pred HHHHHcCCCEEEECceecCCCCCCHHHHHHHHHHHHHHHHh------c-CCCCCEE------EEEeCCHHHHHHHHHHh
Confidence 99999999999999999999999999999988 9999998 2 5679999 99999999999999875
No 3
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=100.00 E-value=7.9e-36 Score=241.76 Aligned_cols=144 Identities=28% Similarity=0.377 Sum_probs=132.9
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCC--CcHHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTI--NPEASLRSAYKNS 78 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~--~~~~~L~~~~~~~ 78 (197)
|.++||+++||++++|+++++||++..+. +| ++++|++++|++|+|+||||||+|+|.|.... ++.+.|+++|+++
T Consensus 27 ~~~~ggv~~ai~~~~G~~l~~e~~~~~~~-~g-~~~~G~~~~T~~~~L~~k~IiH~v~P~~~~~~~~~~~~~L~~~~~~~ 104 (175)
T cd02907 27 LKHGGGLALAIVKAGGPEIQEESDEYVRK-NG-PVPTGEVVVTSAGKLPCKYVIHAVGPRWSGGEAEECVEKLKKAILNS 104 (175)
T ss_pred cCCCCCHHHHHHHHHhHHHHHHHHHHHHh-cC-CCCCCcEEEecCCCCCCCEEEEeCCCcCCCCCCchHHHHHHHHHHHH
Confidence 57899999999999999999999988742 34 89999999999999999999999999998864 4578999999999
Q ss_pred HHHHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHHHHH
Q 029197 79 LSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKI 156 (197)
Q Consensus 79 L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~ 156 (197)
|+.|.+++++|||||+||||++|+|++++|++| ++.+|+++ +..++++| +||++|+++++.|++++
T Consensus 105 L~~a~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~~i~~fl~~------~~~~l~~I------~~v~~~~~~~~~~~~al 172 (175)
T cd02907 105 LRKAEELGLRSIAIPAISSGIFGFPLERCVETIVEAVKEFLET------KGSALKEI------YLVDYDEQTVEAFEKAL 172 (175)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHh------cCCCccEE------EEEECCHHHHHHHHHHH
Confidence 999999999999999999999999999999988 99999984 57789999 99999999999999987
Q ss_pred Hh
Q 029197 157 RG 158 (197)
Q Consensus 157 ~~ 158 (197)
..
T Consensus 173 ~~ 174 (175)
T cd02907 173 EV 174 (175)
T ss_pred hh
Confidence 64
No 4
>PRK00431 RNase III inhibitor; Provisional
Probab=100.00 E-value=1.6e-35 Score=240.28 Aligned_cols=145 Identities=40% Similarity=0.608 Sum_probs=133.1
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCCC-cHHHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTIN-PEASLRSAYKNSL 79 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~~-~~~~L~~~~~~~L 79 (197)
|.++|||++||++++|+++++||+++.+. + +++++|++++|++|+|+||||||+|+|.|+.... +.+.|+++|+++|
T Consensus 28 ~~~~ggva~aI~~~~G~~l~~e~~~~~~~-~-~~l~~G~~~~T~~~~l~~~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L 105 (177)
T PRK00431 28 LLGGGGVDGAIHRAAGPEILEECRELRQQ-Q-GPCPTGEAVITSAGRLPAKYVIHTVGPVWRGGEDNEAELLASAYRNSL 105 (177)
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHHHHh-c-CCCCCCeEEEecCCCCCCCEEEEecCCeecCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999999999742 2 4999999999999999999999999999987653 5789999999999
Q ss_pred HHHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHHHHHH
Q 029197 80 SLAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIR 157 (197)
Q Consensus 80 ~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~~ 157 (197)
+.|++++++|||||+||||++|+|++++|++| ++.+|++ ..+++++| +||++|+++|+.|.++|.
T Consensus 106 ~~a~~~~~~sIa~P~lgtG~~g~p~~~~A~~~~~~i~~f~~-------~~~~l~~I------~~v~~~~~~~~~f~~~l~ 172 (177)
T PRK00431 106 RLAAELGLRSIAFPAISTGVYGYPLEDAARIAVKTVREFLT-------RHKSPEEV------YFVCYDEEAYRLYERLLT 172 (177)
T ss_pred HHHHHcCCceEEECccccCccCCCHHHHHHHHHHHHHHHHh-------cCCCcCEE------EEEECCHHHHHHHHHHHH
Confidence 99999999999999999999999999999988 9999976 45689999 999999999999999998
Q ss_pred hhh
Q 029197 158 GIL 160 (197)
Q Consensus 158 ~~~ 160 (197)
...
T Consensus 173 ~~~ 175 (177)
T PRK00431 173 QQG 175 (177)
T ss_pred Hhh
Confidence 654
No 5
>PRK04143 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-35 Score=253.92 Aligned_cols=143 Identities=28% Similarity=0.376 Sum_probs=129.1
Q ss_pred CCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCC---CCcHHHHHHHHHHHH
Q 029197 3 GGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVT---INPEASLRSAYKNSL 79 (197)
Q Consensus 3 ~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~---~~~~~~L~~~~~~~L 79 (197)
++|||++||+++||++|++||++.++. +|+++++|++++|++|+||||||||+|||.|..+ ..+.+.|++||++||
T Consensus 115 ~~ggId~aI~~aAG~~L~~eC~~~~~~-~g~~~~~G~a~iT~~~nLp~kyVIHtVgP~~~~g~~~~~~~~~L~~cy~s~L 193 (264)
T PRK04143 115 NHDCIDNAIHTFAGVQLRLDCAEIMTE-QGRKEATGQAKITRAYNLPAKYVIHTVGPIIRKQPVSPIRADLLASCYRSCL 193 (264)
T ss_pred CCCcHHHHHHHHhChHHHHHHHHHHHH-cCCCCCCceEEEecCCCCCCCEEEEECCCcccCCCCCcchHHHHHHHHHHHH
Confidence 358999999999999999999998754 5668999999999999999999999999999873 245789999999999
Q ss_pred HHHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHHHHHH
Q 029197 80 SLAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIR 157 (197)
Q Consensus 80 ~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~~ 157 (197)
+.|.+++++|||||+||||++|||++++|++| ++.+|+++ ++.. .+| +|++++++.++.|.+.+.
T Consensus 194 ~~A~~~~~kSIAfP~IsTGi~gfP~~~aA~ia~~tv~~fl~~------~~~~-~~V------if~vf~~~d~~iy~~~l~ 260 (264)
T PRK04143 194 KLAEKAGLKSIAFCCISTGVFGFPKEEAAEIAIKTVLSWLKE------NPSK-LKV------VFNVFTDEDLELYQKALN 260 (264)
T ss_pred HHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHh------CCCC-CEE------EEEEcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 99999984 3433 678 999999999999999987
Q ss_pred hh
Q 029197 158 GI 159 (197)
Q Consensus 158 ~~ 159 (197)
.+
T Consensus 261 ~~ 262 (264)
T PRK04143 261 KE 262 (264)
T ss_pred Hh
Confidence 53
No 6
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=100.00 E-value=1.3e-34 Score=227.88 Aligned_cols=111 Identities=35% Similarity=0.462 Sum_probs=104.1
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCCC--cHHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTIN--PEASLRSAYKNS 78 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~~--~~~~L~~~~~~~ 78 (197)
|.++|||++||+++||+++++||++.. ++++|++++|++|+||||||||+|+|.|+.+.+ .++.|++||+++
T Consensus 26 l~~~ggv~~aI~~aaG~~l~~e~~~~~------~~~~G~~~~T~~~~L~~k~VIH~vgP~~~~~~~~~~~~~L~~~~~~~ 99 (140)
T cd02905 26 LTDKNPISDKIFARAGSELREEIQTLG------GCRTGEAKLTKGYNLPARFIIHTVGPKYNVKYRTAAENALYSCYRNV 99 (140)
T ss_pred cCCCCcHHHHHHHHhCHHHHHHHHHhC------CCCCCcEEEecCCCCCccEEEEecCCccCCCCCcHHHHHHHHHHHHH
Confidence 678999999999999999999999875 799999999999999999999999999998653 368999999999
Q ss_pred HHHHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhH
Q 029197 79 LSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWR 117 (197)
Q Consensus 79 L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~ 117 (197)
|+.|++++++|||||+||||++|||++++|++| +|++|+
T Consensus 100 L~~a~~~~~~SIAfPai~tG~~gfP~~~aa~i~l~~v~~~l 140 (140)
T cd02905 100 LQLAKELGLESIALCVISSEKRNYPPEAAAHIALRTVRRFL 140 (140)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999988 888874
No 7
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]
Probab=100.00 E-value=4.2e-33 Score=226.84 Aligned_cols=146 Identities=36% Similarity=0.542 Sum_probs=134.0
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCC-CcHHHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTI-NPEASLRSAYKNSL 79 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~-~~~~~L~~~~~~~L 79 (197)
|+|||||+.||++++|++++++|++......|.+.++|++++|++|+|+.+||||+|+|.|..+. .+.+.|+.+|+++|
T Consensus 28 l~~gGGVd~AI~~~~g~~l~~~~~~~~~~~~~~~~~~G~Avit~~~~l~a~~ViH~vgp~~~~g~~~~~e~l~~a~~~~l 107 (179)
T COG2110 28 LLGGGGVAGAIHRAAGPQLEEECAEIAPKRGGGRIPVGEAVITEAGRLPAKYVIHTVGPSWRGGSKDEAELLAAAYRAAL 107 (179)
T ss_pred CCCCCcHHHHHHHHhhHHHHHHHHHHhhhhcCCCCCceEEEEccCcCCCCCEEEecCCCcccCCChhHHHHHHHHHHHHH
Confidence 68999999999999999999999999865566689999999999999999999999999998865 35689999999999
Q ss_pred HHHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHHHHHH
Q 029197 80 SLAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIR 157 (197)
Q Consensus 80 ~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~~ 157 (197)
++|.+++++|||||+||||++|+|++++++++ ++.+|+. . .++++| .||++++++++.|...+.
T Consensus 108 ~~a~~~g~~SiAfPaistGv~G~p~~~aa~i~~~~v~~~~~-------~-~~~~~v------~~v~~~~e~~~~~~~~~~ 173 (179)
T COG2110 108 RLAKEAGVRSVAFPAISTGVYGFPLEEAARIAVEAVKDFLP-------E-ASIETV------IFVVYGEETARVYEELLS 173 (179)
T ss_pred HHHHHcCCceeecccccCcccCCCHHHHHHHHHHHHHHhcc-------c-ccccEE------EEEecCchhHHHHHHHHh
Confidence 99999999999999999999999999999998 8888876 3 578889 999999999999999887
Q ss_pred hhh
Q 029197 158 GIL 160 (197)
Q Consensus 158 ~~~ 160 (197)
+..
T Consensus 174 ~~~ 176 (179)
T COG2110 174 THL 176 (179)
T ss_pred hhc
Confidence 654
No 8
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=99.98 E-value=2.9e-32 Score=215.91 Aligned_cols=110 Identities=38% Similarity=0.543 Sum_probs=101.8
Q ss_pred CCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCC---CcHHHHHHHHHHHH
Q 029197 3 GGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTI---NPEASLRSAYKNSL 79 (197)
Q Consensus 3 ~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~---~~~~~L~~~~~~~L 79 (197)
|+|||++||+++||++|++||+++.+ ++|+++++|++++|++|+|+|+||||+|+|.|..+. ++.+.|++||+++|
T Consensus 32 ~~ggv~~aI~~~aG~~l~~e~~~~~~-~~g~~~~~G~a~~T~~~~L~~k~VIHavgP~~~~~~~~~~~~~~L~~~~~~~L 110 (147)
T cd02906 32 LHRCIDNIIHTFAGPQLRQACFELMT-KQGREEPTGQAKITPGYNLPAKYVIHTVGPIIERGLTTPIHRDLLAKCYLSCL 110 (147)
T ss_pred CCCcHHHHHHHHhCHHHHHHHHHHHH-hcCCCCCCCeEEEEeCCCCCCCEEEEECCCcccCCCCCccHHHHHHHHHHHHH
Confidence 56999999999999999999999875 356689999999999999999999999999998764 35789999999999
Q ss_pred HHHHHcCCceEeecccccCCCCccHHHHHHHH--HH
Q 029197 80 SLAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TI 113 (197)
Q Consensus 80 ~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i 113 (197)
+.|.+++++|||||+||||++|||++++|+++ +|
T Consensus 111 ~~a~~~~~~sIA~P~i~tG~~g~p~~~aA~i~~~~v 146 (147)
T cd02906 111 DLAEKAGLKSIAFCCISTGLFGFPQEEAAQIAIKTV 146 (147)
T ss_pred HHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999988 55
No 9
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=99.97 E-value=6.7e-31 Score=205.53 Aligned_cols=108 Identities=28% Similarity=0.336 Sum_probs=99.6
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccC-CCcEEEeecCCCCCCeEEEecCCccCCCCCcHHHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCP-TGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSL 79 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~-~G~vvvT~ag~L~~k~IIH~v~P~~~~~~~~~~~L~~~~~~~L 79 (197)
+.++||++++|++++|+++++||++.. .++ +|++++|++|+|+||||||+++|+|..+ +.+.|+++|+++|
T Consensus 27 ~~~~ggv~~aI~~~~G~~l~~~~~~~~------~~~~~G~~~vT~~~~L~~k~IiH~~~p~~~~~--~~~~l~~~~~~~L 98 (137)
T cd02903 27 FLLKGGVSKAILRKAGPELQKELDKAK------LGQTVGSVIVTKGGNLPCKYVYHVVLPNWSNG--ALKILKDIVSECL 98 (137)
T ss_pred CCCCCCHHHHHHHhccHHHHHHHHHHc------CCCCCCeEEEecCCCCCCCEEEEecCCCCCCc--hHHHHHHHHHHHH
Confidence 468899999999999999999999987 333 6999999999999999999999999865 5789999999999
Q ss_pred HHHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHh
Q 029197 80 SLAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGW 116 (197)
Q Consensus 80 ~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f 116 (197)
+.|++++++|||||+||||++|||++++|++| ++.+|
T Consensus 99 ~~a~~~~~~SIAfP~igtG~~g~p~~~~A~~~~~~i~~f 137 (137)
T cd02903 99 EKCEELSYTSISFPAIGTGNLGFPKDVVAKIMFDEVFKF 137 (137)
T ss_pred HHHHHCCCcEEEECCCcCcCCCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999988 77655
No 10
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=99.95 E-value=7e-28 Score=180.86 Aligned_cols=109 Identities=41% Similarity=0.603 Sum_probs=100.3
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCC--CCcHHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVT--INPEASLRSAYKNS 78 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~--~~~~~~L~~~~~~~ 78 (197)
|.|+|||+++|++++|+++++++++.++ +++++++|++++|++++|+++||||+|+|.|... .++.+.|+++|+++
T Consensus 8 ~~~g~Gva~ai~~~~g~~~~~~~~~~~~--~~~~~~~G~~~~t~~~~l~~~~Iih~v~P~~~~~~~~~~~~~L~~~~~~~ 85 (118)
T PF01661_consen 8 LSMGGGVAKAIFKAAGPALQEECKEIKK--KGGELPVGEVIVTPGGNLPCKYIIHAVGPTYNSPGEKNSYEALESAYRNA 85 (118)
T ss_dssp SSBSSHHHHHHHHHHTHHHHHHHHHHHH--HHHSSSTTSEEEEEETTSSSSEEEEEEEEETTTSTSTTHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHhchHHHHHHHHHhhc--ccCcccCCCeeeecCCCccccceEEEecceeccccccccHHHHHHHHHHH
Confidence 5789999999999999999999998863 2237999999999999999999999999999743 35689999999999
Q ss_pred HHHHHHcCCceEeecccccCCCCccHHHHHHHH
Q 029197 79 LSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS 111 (197)
Q Consensus 79 L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~ 111 (197)
|+.|++++++||+||+||||++|+|+++++++|
T Consensus 86 l~~a~~~~~~sIa~P~ig~G~~g~~~~~~a~i~ 118 (118)
T PF01661_consen 86 LQKAEENGIKSIAFPAIGTGIGGFPWDEVAEIM 118 (118)
T ss_dssp HHHHHHTTTSEEEEESTTSSTTSBTHHHHHHHH
T ss_pred HHHHHHcCCcccccCcccCCCCCCCHHHHHhhC
Confidence 999999999999999999999999999999986
No 11
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=99.95 E-value=2.4e-27 Score=183.89 Aligned_cols=104 Identities=34% Similarity=0.390 Sum_probs=97.0
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCCCcHHHHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLS 80 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~~~~~~L~~~~~~~L~ 80 (197)
|.|+||++++|++++|++++++|++.. ++++|++++|++++|+||||||+++|.+.. ..+.+.|+++|+++|+
T Consensus 25 ~~~g~Gva~ai~~~~G~~~~~~~~~~~------~~~~G~~~~t~~~~l~~k~Iih~~~~~~~~-~~~~~~l~~~~~~~l~ 97 (133)
T cd03330 25 LRMGGGVAGAIKRAGGSVIEREAVRKA------PIPVGEAVITGAGDLPARYVIHAATMEEPG-RSSEESVRKATRAALA 97 (133)
T ss_pred CCCCCcHHHHHHHHhCHHHHHHHHHcC------CCCCCeEEEEeCCCCCCCEEEEeCCCCCCC-CCHHHHHHHHHHHHHH
Confidence 578999999999999999999998764 889999999999999999999999997655 4567899999999999
Q ss_pred HHHHcCCceEeecccccCCCCccHHHHHHHH
Q 029197 81 LAKANNIQYIAFPAISCGLYWCTLFCLQMIS 111 (197)
Q Consensus 81 ~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~ 111 (197)
.|++++++|||||+||||++|+|+++++++|
T Consensus 98 ~a~~~~~~sIA~P~igtG~~g~~~~~~a~i~ 128 (133)
T cd03330 98 LADELGIESVAFPAMGTGVGGLPKEDVARLM 128 (133)
T ss_pred HHHHcCCCEEEECcccccCCCCCHHHHHHHH
Confidence 9999999999999999999999999999998
No 12
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=1.8e-27 Score=195.62 Aligned_cols=141 Identities=35% Similarity=0.476 Sum_probs=128.2
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCCCcH-HHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPE-ASLRSAYKNSL 79 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~~~~-~~L~~~~~~~L 79 (197)
|.+|+|++.+|++++||++..||.+.. .+++|.+++|.+++||+|+|||+|+|.|..+..++ ..|..||+++|
T Consensus 52 l~~g~~~~~ai~~aagp~l~~e~~~~~------~c~tG~ak~t~~~~Lpak~vIHtvgP~~~~d~~~~~~~L~~~~rs~L 125 (200)
T KOG2633|consen 52 LLGGKGVDEAIHRAAGPELPLECAYLH------GCRTGAAKSTGGYGLPAKRVIHTVGPRWKEDKLQECYFLHSCYRSCL 125 (200)
T ss_pred eccCcchhHHHHHhcCCcchHHHHhhc------CCCCCeeEecCCCCCceeEEEEecCchhhccchHHHHHHHHHHHHHH
Confidence 678999999999999999999999986 69999999999999999999999999999877433 36999999999
Q ss_pred HHHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHHHHHH
Q 029197 80 SLAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIR 157 (197)
Q Consensus 80 ~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~~ 157 (197)
..|.++.++|||||+|++|.+|||.+.+|++. +|+.|.++ +....++.+ .|+++|+++|..|..++.
T Consensus 126 ~la~~~~ls~iAf~~I~sg~~gyP~e~aa~~~l~ti~~~f~~-----~~d~~l~~~------~f~~~d~e~~~~~l~~~~ 194 (200)
T KOG2633|consen 126 DLAIEKLLSSIAFPKISSGRVGYPWEDAAKIELETIRVFFVK-----NKDSSLKTV------PFLDYDSESYGAYLPEYA 194 (200)
T ss_pred HHHHHhccceeeeeeeeccccCccHHHHHHHHHHHHHHHHhh-----CCCceEEEE------EEeccCCchHHHHHhhhc
Confidence 99999999999999999999999999999976 99888886 356668889 999999999999988765
Q ss_pred h
Q 029197 158 G 158 (197)
Q Consensus 158 ~ 158 (197)
.
T Consensus 195 ~ 195 (200)
T KOG2633|consen 195 P 195 (200)
T ss_pred c
Confidence 4
No 13
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.
Probab=99.94 E-value=1.1e-26 Score=190.65 Aligned_cols=116 Identities=19% Similarity=0.074 Sum_probs=102.1
Q ss_pred CCCCChHHHHHHHhhC-HHHHHHHhhccccCCCCccCCCcEEEeecCCCC----------CCeEEEecCCccC-CCCCcH
Q 029197 1 MLGGGGCDGAIRRAAG-PELLEACYRVPEVGFGIRCPTGEARITPGFKLP----------ASHVIHTVGPIYG-VTINPE 68 (197)
Q Consensus 1 L~~ggGva~AI~~aaG-~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~----------~k~IIH~v~P~~~-~~~~~~ 68 (197)
|.||||+++||++++| ++|+++|++.+..++.+.+++|++++|++++|+ +|||||++++.+. ....+.
T Consensus 54 ~~mgGGvD~AI~~~~G~~~le~~~q~~~~~~~~g~lpvG~a~it~~~~l~~~~~~~~~~~~~~iIHaPtm~~P~~~~~~~ 133 (186)
T cd02900 54 GYLDGGFDLAIRNFFGGKPLETWVQNQLLRKYLGYLPVGSATVVPLGRALLEKTIYCRWGIPYLIHAPTMRVPSPVITGT 133 (186)
T ss_pred cCCCCcHHHHHHHHcChHHHHHHHHHHHHHhcCCCCCCCcEEEecCCCCccccccccccCCCEEEEcCcccCCCCCCCcH
Confidence 5799999999999999 699999987754444459999999999999999 9999999887665 223457
Q ss_pred HHHHHHHHHHHHHHHHc--CCceEeecccccCCCCccHHHHHHHH--HHHHh
Q 029197 69 ASLRSAYKNSLSLAKAN--NIQYIAFPAISCGLYWCTLFCLQMIS--TIFGW 116 (197)
Q Consensus 69 ~~L~~~~~~~L~~A~~~--~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f 116 (197)
+.|++||+++|+.|.++ +++|||||+||||.+|+|++++|++| ++.+|
T Consensus 134 ~~l~~a~~~~L~~a~~~~~~i~sIa~P~igTGvgg~p~~~aA~~m~~ai~~f 185 (186)
T cd02900 134 EPVFDAMWNALNAIPKENQEINTLVLPGLGTGYGGVPPEIAAKQMAFAIRLF 185 (186)
T ss_pred HHHHHHHHHHHHHHHhccCCCCEEEECchhcCCCCCCHHHHHHHHHHHHHHh
Confidence 89999999999999987 89999999999999999999999998 77665
No 14
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=99.90 E-value=1.9e-23 Score=160.14 Aligned_cols=107 Identities=39% Similarity=0.495 Sum_probs=96.1
Q ss_pred CCCCChHHHHHHHhhCHHH-HHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCC-CCcHHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPEL-LEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVT-INPEASLRSAYKNS 78 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l-~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~-~~~~~~L~~~~~~~ 78 (197)
+.++||++++|++++|+++ ++++++.. ++++++|++++|+++++++++|||+++|+|... ..+.+.|+++|+++
T Consensus 25 ~~~~~g~a~~i~~~~g~~~~~~~~~~~~----~~~~~~G~~~~~~~~~~~~~~Iih~~~p~~~~~~~~~~~~l~~~~~~~ 100 (133)
T smart00506 25 GAHGGGVAGAIARAAGKALEKEAFRKLA----GGECPVGTAVVTEGGNLPAKYVIHAVGPRASGHSNEGFELLENAYRNC 100 (133)
T ss_pred cCCCCcHHHHHHHHhChHHHHHHHHHhc----CCCcCCccEEEecCCCCCCCEEEEeCCCCCCCCCccHHHHHHHHHHHH
Confidence 4689999999999999996 55555543 238999999999999999999999999999886 36689999999999
Q ss_pred HHHHHHcCCceEeecccccCCCCccHHHHHHHH
Q 029197 79 LSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS 111 (197)
Q Consensus 79 L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~ 111 (197)
|+.|++++++|||||+||||++|+|++++++++
T Consensus 101 l~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~ 133 (133)
T smart00506 101 LELAIELGITSVAIPLIGTGIYGVPKDRSAQAL 133 (133)
T ss_pred HHHHHHcCCCEEEECCccCCCCCCCHHHHHhhC
Confidence 999999999999999999999999999999864
No 15
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.
Probab=99.88 E-value=3.2e-22 Score=156.16 Aligned_cols=108 Identities=34% Similarity=0.414 Sum_probs=98.9
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCC-CCeEEEecCCccCCCC--CcHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLP-ASHVIHTVGPIYGVTI--NPEASLRSAYKN 77 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~-~k~IIH~v~P~~~~~~--~~~~~L~~~~~~ 77 (197)
+.++||++++|++++|+++++++++..+.+ .+++|++.+|++++++ ++||||+++|.|.... .+.+.|+++|++
T Consensus 26 ~~~g~gi~~ai~~~~g~~~~~~~~~~~~~~---~~~~G~~~~t~~~~~~~~~~vih~~~p~~~~~~~~~~~~~l~~a~~~ 102 (147)
T cd02749 26 GRDGGGVNLAISKKAGKELEEESKKLRKEL---ELQVGEAVLTKGYNLDGAKYLIHIVGPKYNQGNNKAAFELLKNAYEN 102 (147)
T ss_pred CCCCChHHHHHHHHhCHHHHHHHHHHhccc---CCCCCCEEECcCCCCCcCCEEEEeCCCCCCCCCCchHHHHHHHHHHH
Confidence 368999999999999999999999987422 4789999999999999 9999999999998864 357899999999
Q ss_pred HHHHHHHcCCceEeecccccCCCCc------cHHHHHHHH
Q 029197 78 SLSLAKANNIQYIAFPAISCGLYWC------TLFCLQMIS 111 (197)
Q Consensus 78 ~L~~A~~~~~~SIAfPaLgtG~~g~------p~~~~A~i~ 111 (197)
+|..|.+++++|||||.||||.+|+ |.+.++++|
T Consensus 103 ~L~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~~~~~i~ 142 (147)
T cd02749 103 CLKEAEEKGIKSIAFPLIGTGPAGFPKDEREPWEDAIKIA 142 (147)
T ss_pred HHHHHHHcCCCEEEECCcccccCCCCccccCCHHHHHHHH
Confidence 9999999999999999999999999 999999887
No 16
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.88 E-value=3e-24 Score=206.28 Aligned_cols=149 Identities=26% Similarity=0.221 Sum_probs=130.4
Q ss_pred CCCCChHHHHHHHhhCHHH---HHHHhhccccC--------------------C----------CCccCCCcEEEe----
Q 029197 1 MLGGGGCDGAIRRAAGPEL---LEACYRVPEVG--------------------F----------GIRCPTGEARIT---- 43 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l---~~e~~~~~~~~--------------------~----------g~~~~~G~vvvT---- 43 (197)
|++||||++||+++||+++ +++|++..++. . .|++++|++++|
T Consensus 504 ll~~~g~~~ai~~~~g~~~~~~~~~~~~~~~~~~~l~~~~rp~~~~~~~~~~~~l~~~~~f~~~~g~~~~g~a~~T~~~~ 583 (725)
T PRK13341 504 LLWALGPLRAVPEGGVTVLCSSQEDSDRLVAQLELLDPLERPVLLDGSLEALKTLPANLQFEWIGGRLPTGDAVVTKELW 583 (725)
T ss_pred chhhhhHHHhccCCCeEEecCCHHHHHHHHHHHhhcchhhCccccccchhhhhhcCcccceeeeeccCcccchhhHHHHH
Confidence 6899999999999999999 89998753210 0 249999999999
Q ss_pred --------ecCCCCCCeEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHcCCc----------eEeecccccCCCCccHH
Q 029197 44 --------PGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQ----------YIAFPAISCGLYWCTLF 105 (197)
Q Consensus 44 --------~ag~L~~k~IIH~v~P~~~~~~~~~~~L~~~~~~~L~~A~~~~~~----------SIAfPaLgtG~~g~p~~ 105 (197)
++|+|+++||||+|||.|..+.. .+.|.+||+++|..|++++++ |||||+|+||++|||.+
T Consensus 584 ~~l~~~~~~~g~L~~~~vIh~vGp~~~~~~~-~~~l~~~~~~~L~~Aee~~~~~~~~~~~~~~sia~p~istgv~~~p~~ 662 (725)
T PRK13341 584 QQLTEKLTPAGKLKLLYSIPAVGPAWALLSE-DELLYKALYSALLEAEELWLKLQWDQSLLQQSLEMPGWSTGIEQWPEE 662 (725)
T ss_pred HHHHHhcCCCCeeEEEEeccccChHhhhcCc-cchhHHHHHHHHHHHHHHhcccccchhHHHHHHHhcCCccceecCCcc
Confidence 99999999999999999987654 579999999999999999999 99999999999999999
Q ss_pred HHHHHH--HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHHHHHHhhhhhc
Q 029197 106 CLQMIS--TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIRGILQEI 163 (197)
Q Consensus 106 ~~A~i~--~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~~~~~~~~ 163 (197)
++++++ +|.+|+++ ++ ...++ .++.++++.+..+.+.+..++-+.
T Consensus 663 ~a~~i~~~~i~~~~~~------~~-~~~~~------i~~~~~~~~~~~~~~~~~~~~~~~ 709 (725)
T PRK13341 663 LALGIDSKLIKRWLAQ------GP-DYRQA------LATNLEEERICNLDEELTRILGEQ 709 (725)
T ss_pred cccccCHHHHHHHHhc------CC-cHHHH------HhccCCHHHHHHHHHHHHHHhhcc
Confidence 999988 89999873 33 36677 899999999999999998877543
No 17
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=99.73 E-value=5.5e-17 Score=126.38 Aligned_cols=104 Identities=16% Similarity=0.155 Sum_probs=86.8
Q ss_pred CCCCChHHHHHHHhh--C-HHHHHHHhhccccCCCCccCCCcEE-EeecCCCCCCeEEEecCCccCCCCCcHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAA--G-PELLEACYRVPEVGFGIRCPTGEAR-ITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYK 76 (197)
Q Consensus 1 L~~ggGva~AI~~aa--G-~~l~~e~~~~~~~~~g~~~~~G~vv-vT~ag~L~~k~IIH~v~P~~~~~~~~~~~L~~~~~ 76 (197)
+.||+|++.+|.++. + .++++.|++. .+..|++. ++.++++++++|+|+++|.|.+...+.+.|+++++
T Consensus 26 ~~mG~Gia~~i~~~~p~~~~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~I~~~~t~~~~~~~~~~~~l~~~l~ 98 (140)
T cd02901 26 GVMGKGIALQFKEKFPEFVEEYRAACKKK-------ELLLGGVAVLERGSSLVSRYIYNLPTKVHYGPKSRYEAIEKSLR 98 (140)
T ss_pred CccChHHHHHHHHHCcHHHHHHHHHHHhc-------CCCCCcEEEEecCCCCCceEEEEeeccCCCCCCCcHHHHHHHHH
Confidence 468999999999973 2 3555555544 34456655 56677888999999999988775566899999999
Q ss_pred HHHHHHHHcCCceEeecccccCCCCccHHHHHHHH
Q 029197 77 NSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS 111 (197)
Q Consensus 77 ~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~ 111 (197)
++++.|++++++|||||.||||++|+|.+++++++
T Consensus 99 ~~~~~a~~~~~~sva~P~iG~G~~G~~w~~v~~ii 133 (140)
T cd02901 99 ELRAHARDNGIKSVAMPRIGCGLGGLDWEEVEPLI 133 (140)
T ss_pred HHHHHHHHcCCCEEeeCCCCCcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999988
No 18
>PHA02595 tk.4 hypothetical protein; Provisional
Probab=99.44 E-value=1.5e-12 Score=103.92 Aligned_cols=108 Identities=15% Similarity=0.086 Sum_probs=89.1
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEE-eecCCCCCCeEEEecCCccCCCCC-cHHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARI-TPGFKLPASHVIHTVGPIYGVTIN-PEASLRSAYKNS 78 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvv-T~ag~L~~k~IIH~v~P~~~~~~~-~~~~L~~~~~~~ 78 (197)
..||+|+|.+|.++.+ ++.++.++.- .+++.+.|++.+ +.+++.+-+||+|..+- |..+.. +.+.|++++++.
T Consensus 29 g~mG~GIA~~~k~~~P-~~~~~y~~~~---~~~~~~lG~~~~~~~~~~~~~~~I~nl~tq-~~~~~~~~y~ai~~~l~~l 103 (154)
T PHA02595 29 HTMGSGIAGQLAKAFP-QILEADKLTT---EGDVEKLGTFSVWEKYVGGHKAYCFNLYTQ-FDPGPNLEYSALMNCFEEL 103 (154)
T ss_pred CcCChHHHHHHHHHcC-hHHHHHHHHh---cCCccccceEEEEEeeccCCCEEEEEEecc-CCCCCCCcHHHHHHHHHHH
Confidence 3699999999999995 6666666654 234778999965 66677778999999875 766543 457799999999
Q ss_pred HHHHHHcCC-ceEeecccccCCCCccHHHHHHHH-HH
Q 029197 79 LSLAKANNI-QYIAFPAISCGLYWCTLFCLQMIS-TI 113 (197)
Q Consensus 79 L~~A~~~~~-~SIAfPaLgtG~~g~p~~~~A~i~-~i 113 (197)
.+.+.++++ .|||+|.||||++|.|.+++.+++ .+
T Consensus 104 ~~~~~~~~~~~sIa~P~IG~GlgGl~W~~V~~ii~~~ 140 (154)
T PHA02595 104 NEVFEGTLFKPTIYIPRIGAGIAGGDWDKIEAIIDEA 140 (154)
T ss_pred HHHHHhcCCCcEEeeCCCCccCCCCCHHHHHHHHHHh
Confidence 999999998 999999999999999999999988 44
No 19
>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A.
Probab=98.84 E-value=1.9e-08 Score=86.98 Aligned_cols=112 Identities=17% Similarity=0.085 Sum_probs=69.3
Q ss_pred CCChHHHHHHHhhCHHHHH-HHhhccccCCCCccCCCcEEEeecC----------CCCCCeEEEecCCc------cCCCC
Q 029197 3 GGGGCDGAIRRAAGPELLE-ACYRVPEVGFGIRCPTGEARITPGF----------KLPASHVIHTVGPI------YGVTI 65 (197)
Q Consensus 3 ~ggGva~AI~~aaG~~l~~-e~~~~~~~~~g~~~~~G~vvvT~ag----------~L~~k~IIH~v~P~------~~~~~ 65 (197)
||||.+.||.++.|.+-.+ -.++.. .+...++|++-+.+-. +-.++||+|+.+.. |....
T Consensus 82 MgGGFDLai~~~fggk~~E~~~r~~l---~~~y~pvGs~tvIdL~~~~~~~~~~~~~~i~yIi~~PTMv~P~~~~~d~~~ 158 (280)
T PF14519_consen 82 MGGGFDLAISEYFGGKPFENWFRAQL---GERYHPVGSCTVIDLPKCFEPSSIYNNWGIRYIIHVPTMVVPEKPVWDREV 158 (280)
T ss_dssp --SHHHHHHHHHHTSHHHHHHHHHHT---TTS---TT--EEEEGGGGG--------TTEEEEEEEEEES-TTS-S--TT-
T ss_pred CCCchhHHHHHHhCCchhHHHHHHHH---hccccCCCeeEEEECchhhhhhhcccccCceEEEECCccccCCCcccchhH
Confidence 7999999999998865444 355444 2335789988877752 34578999997643 32221
Q ss_pred ---CcHHHHHHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHh
Q 029197 66 ---NPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRR 118 (197)
Q Consensus 66 ---~~~~~L~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~ 118 (197)
..-+.+-++++|++..+. ..+.+|.+|.||||.+|+|++++|+.| ++.-|..
T Consensus 159 ~~~t~~~~vfn~~WN~l~~~p-~~IdtLiiPGLgTGyGgV~p~~sAk~M~fAl~l~~l 215 (280)
T PF14519_consen 159 PYETGWSLVFNAMWNALRHAP-EDIDTLIIPGLGTGYGGVPPEISAKQMAFALRLYNL 215 (280)
T ss_dssp TTTTTHHHHHHHHHHHHHTS--TT-SEEEE--SSSSTT---HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhccCC-CCCCeEEECCcccccCCCCHHHHHHHHHHHHHHHHh
Confidence 123567788888887664 579999999999999999999999988 8876654
No 20
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven
Probab=97.70 E-value=0.00065 Score=54.28 Aligned_cols=104 Identities=15% Similarity=0.093 Sum_probs=75.0
Q ss_pred CC-ChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCC----CC-CCeEEEecCCccCCCC----CcHHHHH
Q 029197 3 GG-GGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFK----LP-ASHVIHTVGPIYGVTI----NPEASLR 72 (197)
Q Consensus 3 ~g-gGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~----L~-~k~IIH~v~P~~~~~~----~~~~~L~ 72 (197)
+| ||++.||.++. |+..++-++.-+ .+ .+..|++.+.+-.. .. -.||...++....+.. -+.+.|+
T Consensus 32 WG~gGia~al~~k~-p~~~~~Y~~~~~--~~-dl~LG~~~li~v~~~~~~~~~~~~va~l~~q~~~~~~~~~~~~~~aL~ 107 (152)
T cd03331 32 WGRGGLFTALEKRS-DQPRKAYELAGK--MK-DLHLGDLHLFPIDDKNSRLKGPDWVALIVAQHRDKSNPLSGIKLSALE 107 (152)
T ss_pred CCcchHHHHHHHhC-CcHHHHHHHHHh--cC-CCccccEEEEEeccccCCCCCCeEEEEEEeEccCCCCCCCccCHHHHH
Confidence 56 79999999988 544444444321 22 67789998876521 11 3588888887654432 2468888
Q ss_pred HHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH
Q 029197 73 SAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS 111 (197)
Q Consensus 73 ~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~ 111 (197)
+++.++-..|.. +-.||.+|=||+|.+|.|=+...+++
T Consensus 108 ~~L~~~~~~a~~-~~~sVhmPrIg~Gl~g~~W~~~E~li 145 (152)
T cd03331 108 KGLKKIYFAAKQ-KSASVHLPRIGHSTKSFNWYGTERLI 145 (152)
T ss_pred HHHHHHHHHHHc-CCCEEEeCCCCCCCCCCCHHHHHHHH
Confidence 888888887765 45889999999999999999988876
No 21
>TIGR02452 conserved hypothetical protein TIGR02452. Members of this uncharacterized protein family are found in Streptomyces, Nostoc sp. PCC 7120, Clostridium acetobutylicum, Lactobacillus johnsonii NCC 533, Deinococcus radiodurans, and Pirellula sp. for a broad but sparse phylogenetic distibution that at least suggests lateral gene transfer.
Probab=97.68 E-value=0.00021 Score=61.99 Aligned_cols=89 Identities=16% Similarity=0.192 Sum_probs=67.9
Q ss_pred EEEecCCccCCC-----C---CcHHHHHHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH-HHHHhHhhcccc
Q 029197 53 VIHTVGPIYGVT-----I---NPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS-TIFGWRRQGNCC 123 (197)
Q Consensus 53 IIH~v~P~~~~~-----~---~~~~~L~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~-~i~~f~~~~~~~ 123 (197)
||=++.|++... . +..+.+++-++.+|..|..+|.+++.+-|.|||.++-|+.++|++. .++.. +.
T Consensus 164 vIT~aA~n~~~~~~~~~~~~~~~~~~~k~rm~~vL~ia~~~g~~~LVLGA~GCG~f~N~p~~VA~~f~evL~~-~~---- 238 (266)
T TIGR02452 164 FITSPAPNARPVARLYPISYEEIPMTLKNRMYKVLNIAEDQNIDALVLGAWGCGVFGNDPAEVAKIFHDLLSP-GG---- 238 (266)
T ss_pred EEEeCCCCCcchhccCCCccHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccccccCCCHHHHHHHHHHHhcc-Cc----
Confidence 555566776421 1 1247899999999999999999999999999999999999999998 77421 11
Q ss_pred cccccCcceeccccceEEEecch----hHHHHHH
Q 029197 124 LFHLEDVKNFEVGTSSKLMSFEQ----LVYQSLD 153 (197)
Q Consensus 124 ~~~~~~l~~I~~~~~~~~v~~d~----~~~~~f~ 153 (197)
.-...+++| .|.++|. ..+++|.
T Consensus 239 -ef~g~F~~V------vFAI~d~~~~~~~~~~F~ 265 (266)
T TIGR02452 239 -IFKGRIKEV------VFAILDRHGQSTNTQIFR 265 (266)
T ss_pred -cccCceeEE------EEEEeCCCCCCcHHhHhh
Confidence 123589999 9999983 3466664
No 22
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=96.70 E-value=0.019 Score=54.07 Aligned_cols=122 Identities=13% Similarity=0.123 Sum_probs=87.3
Q ss_pred ccCCCcEEEeecCCCC-CCeEEEecCCc-cCCCC-CcHHHHHHHHHHHHHHHHHcCCceEeecccccCCCCccHH--HHH
Q 029197 34 RCPTGEARITPGFKLP-ASHVIHTVGPI-YGVTI-NPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLF--CLQ 108 (197)
Q Consensus 34 ~~~~G~vvvT~ag~L~-~k~IIH~v~P~-~~~~~-~~~~~L~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~--~~A 108 (197)
.+.+||+.||.--||. +.-|+|.|.-. ...+. ++..-+-..++|+|+.|.++++++|.+|.+-+.-..-... =++
T Consensus 371 ~l~~gd~yitrhsnl~~~~vvfhlv~d~~~~~~~~~~r~~~~~glrnil~~~~~~~i~t~~iplll~~~~~e~mt~~wc~ 450 (510)
T PF10154_consen 371 TLKPGDFYITRHSNLSDVHVVFHLVVDDSLRSSNINSRHPIILGLRNILRTASRYDITTLTIPLLLVHEMSEEMTIPWCL 450 (510)
T ss_pred cCCCCceEEecccCcccceEEEEEEecCccccCCCCCcChHHHHHHHHHHHHHHcCCCeeeehhhhcCccchhccHHHHH
Confidence 5689999999999999 56688998532 11111 4567888899999999999999999999998875432221 132
Q ss_pred H----HH-HHHHhHhhcccccccccCcceeccccceEEEecc---hhHHHHHHHHHHhhhhhc
Q 029197 109 M----IS-TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFE---QLVYQSLDQKIRGILQEI 163 (197)
Q Consensus 109 ~----i~-~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d---~~~~~~f~~~~~~~~~~~ 163 (197)
+ ++ .|+.|+-. .+.-.....++| .|++-+ ++.|..+...+..+|...
T Consensus 451 ~Raelv~k~vkg~~~e--~~~~~~~~~~tv------qf~~P~~~~~~~f~~~~~~~~~~fr~~ 505 (510)
T PF10154_consen 451 KRAELVFKCVKGFMME--MASWGGGESRTV------QFLLPQGISDEMFTQLSNMLPSIFRVS 505 (510)
T ss_pred HHHHHHHHHHHHHHHH--HhhhcCccceeE------EEeCCCCCCHHHHHHHHhhchhhhccc
Confidence 2 33 77777552 222234455788 998875 578999999998888654
No 23
>COG4295 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.83 E-value=0.077 Score=45.04 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHhhcccccccccCcceeccccceEEEecc
Q 029197 68 EASLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFE 145 (197)
Q Consensus 68 ~~~L~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d 145 (197)
.+.|..-++.+|+.|..++.+-+.+=+-|||+++-+|..+|+++ .+.+=.+ ....++.| .|-++|
T Consensus 199 ~~~l~~R~~kil~la~~~~~~alVLGAwGCGVFrNdPA~Va~iF~~~Lleg~~-------~~g~fkhv------~FavlD 265 (285)
T COG4295 199 REALNIRIKKILKLALSKNPKALVLGAWGCGVFRNDPADVAKIFCQQLLEGIS-------KLGDFKHV------VFAVLD 265 (285)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEcccccccccCCHHHHHHHHHHHHhhhhh-------hhcccceE------EEEEec
Confidence 47788889999999999999999999999999999999999988 4421111 34567888 998888
Q ss_pred h--hHHHHHHHHHHhh
Q 029197 146 Q--LVYQSLDQKIRGI 159 (197)
Q Consensus 146 ~--~~~~~f~~~~~~~ 159 (197)
. .+...|+++++.+
T Consensus 266 ~n~~~~~iFr~ele~f 281 (285)
T COG4295 266 RNMTIVNIFRKELEYF 281 (285)
T ss_pred CCchHHHHHHHHHHhh
Confidence 4 5578888887654
No 24
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=79.35 E-value=5.8 Score=35.07 Aligned_cols=41 Identities=10% Similarity=-0.019 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH
Q 029197 71 LRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS 111 (197)
Q Consensus 71 L~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~ 111 (197)
=.+.+.++++.|.+.|++.|.+=++|+.++.=|++++..+|
T Consensus 96 G~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~EV~~Lm 136 (296)
T PRK14827 96 GEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLM 136 (296)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeecchhhcCCHHHHHHHH
Confidence 34567778888889999999999999999999999999888
No 25
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=78.38 E-value=6.9 Score=32.86 Aligned_cols=46 Identities=13% Similarity=0.064 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH-HHHHhHh
Q 029197 73 SAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS-TIFGWRR 118 (197)
Q Consensus 73 ~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~-~i~~f~~ 118 (197)
+.+.+++..|.+.|++.+.+=++++.+++=|++++..+| -+.++++
T Consensus 25 ~~l~~i~~~~~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~ 71 (223)
T PF01255_consen 25 EKLKEIVEWCLELGIKYLTVYAFSTENWKRPKEEVDALMDLFERYLR 71 (223)
T ss_dssp HHHHHHHHHHHHCT-SEEEEEEEETTGGGS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEEecchhhcCCHHHHHHHHHHHHHHHH
Confidence 455677777789999999999999999999999999988 4444443
No 26
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=77.55 E-value=7.3 Score=32.95 Aligned_cols=47 Identities=9% Similarity=-0.007 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH-HHHHhHh
Q 029197 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS-TIFGWRR 118 (197)
Q Consensus 72 ~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~-~i~~f~~ 118 (197)
.+.+.+++..|.+.|++.+.+=++|+-++.=|++++..+| -+..+++
T Consensus 30 ~~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R~~~EV~~Lm~l~~~~l~ 77 (221)
T cd00475 30 AEKLRDILRWCLELGVKEVTLYAFSTENWKRPKEEVDFLMELFRDVLR 77 (221)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeechhhhCcCHHHHHHHHHHHHHHHH
Confidence 4566777788889999999999999999999999999988 4444444
No 27
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=77.39 E-value=7.4 Score=33.39 Aligned_cols=49 Identities=10% Similarity=0.053 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH-HHHHhHh
Q 029197 70 SLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS-TIFGWRR 118 (197)
Q Consensus 70 ~L~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~-~i~~f~~ 118 (197)
.=.+.+.++++.|.+.|++.|.+=++|+-+++=|++++..+| -+.++++
T Consensus 36 ~G~~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~Lm~L~~~~l~ 85 (241)
T PRK14842 36 EGANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSIFGLLVEFIE 85 (241)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHH
Confidence 334567778888889999999999999999999999999998 4555544
No 28
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=76.31 E-value=9.5 Score=33.22 Aligned_cols=40 Identities=20% Similarity=0.059 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH
Q 029197 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS 111 (197)
Q Consensus 72 ~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~ 111 (197)
-..+...|+.|.+.|++.|.+=|.++-+++=|++++-.+|
T Consensus 66 f~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM 105 (271)
T KOG1602|consen 66 FEALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLM 105 (271)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHHH
Confidence 3466778888999999999999999999999999999888
No 29
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=76.16 E-value=8 Score=33.37 Aligned_cols=47 Identities=9% Similarity=-0.084 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH-HHHHhHh
Q 029197 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS-TIFGWRR 118 (197)
Q Consensus 72 ~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~-~i~~f~~ 118 (197)
.+.+.++++.|.+.|++.|++=++|+-++.=|++++..+| -+.++++
T Consensus 52 ~~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~ 99 (250)
T PRK14840 52 AKSLPQIVDTALHLGIEVLTLFAFSTENFSRSKEEVAELFSLFNSQLD 99 (250)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHH
Confidence 4566777778889999999999999999999999999988 4444444
No 30
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=75.98 E-value=7.7 Score=33.08 Aligned_cols=49 Identities=12% Similarity=0.017 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH-HHHHhHh
Q 029197 70 SLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS-TIFGWRR 118 (197)
Q Consensus 70 ~L~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~-~i~~f~~ 118 (197)
.=.+.++++++.|.+.|++.+++=++|+-++.=|++++..+| -+.++++
T Consensus 34 ~G~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm~L~~~~l~ 83 (230)
T PRK14837 34 EGLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLMFLIADYLS 83 (230)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHH
Confidence 344567778888889999999999999999999999999988 4444443
No 31
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=75.61 E-value=9.5 Score=32.53 Aligned_cols=47 Identities=4% Similarity=0.032 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH-HHHHhHh
Q 029197 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS-TIFGWRR 118 (197)
Q Consensus 72 ~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~-~i~~f~~ 118 (197)
.+.+.++++.|.+.|++.+.+=++|+-++.=|++++..+| -+.++++
T Consensus 34 ~~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R~~~Ev~~Lm~L~~~~l~ 81 (233)
T PRK14833 34 VKTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKLLKKYLK 81 (233)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecchhhcCcCHHHHHHHHHHHHHHHH
Confidence 4566777778889999999999999999999999999988 4444443
No 32
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=74.38 E-value=10 Score=32.21 Aligned_cols=47 Identities=6% Similarity=-0.050 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH-HHHHhHh
Q 029197 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS-TIFGWRR 118 (197)
Q Consensus 72 ~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~-~i~~f~~ 118 (197)
.+.++++++.|.+.|++.+.+=++|+-++.=|++++..+| -+.++++
T Consensus 29 ~~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm~L~~~~l~ 76 (226)
T TIGR00055 29 VKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLD 76 (226)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHHHHHHHHHH
Confidence 4567778888889999999999999999999999999988 4444443
No 33
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=73.58 E-value=11 Score=32.36 Aligned_cols=41 Identities=7% Similarity=0.024 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH
Q 029197 71 LRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS 111 (197)
Q Consensus 71 L~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~ 111 (197)
=.+.+.+++..|.+.|++.|.+=++++.++.=|.+++..+|
T Consensus 43 G~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~lm 83 (243)
T PRK14829 43 GEPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLM 83 (243)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHHH
Confidence 34566777778889999999999999999999999999888
No 34
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=71.91 E-value=13 Score=32.01 Aligned_cols=48 Identities=13% Similarity=0.012 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH-HHHHhHh
Q 029197 71 LRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS-TIFGWRR 118 (197)
Q Consensus 71 L~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~-~i~~f~~ 118 (197)
=.+.+.+++..|.+.|++.+.+=++|+-++.=|++++..+| -+..+++
T Consensus 38 G~~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~ 86 (239)
T PRK14839 38 GVEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLMRLLRAYLR 86 (239)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEechhhcCCCHHHHHHHHHHHHHHHH
Confidence 34566777778889999999999999999999999999988 4444443
No 35
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=71.54 E-value=13 Score=31.82 Aligned_cols=47 Identities=9% Similarity=0.024 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH-HHHHh
Q 029197 70 SLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS-TIFGW 116 (197)
Q Consensus 70 ~L~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~-~i~~f 116 (197)
.=.+.+.++++.|.+.|++.+.+=++|+-++.=|++++..+| -+.++
T Consensus 31 ~G~~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~ 78 (233)
T PRK14841 31 RGAEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQM 78 (233)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHHHHHHHH
Confidence 334567777888889999999999999999999999999988 44333
No 36
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=70.57 E-value=16 Score=31.43 Aligned_cols=49 Identities=4% Similarity=-0.082 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH-HHHHhHh
Q 029197 70 SLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS-TIFGWRR 118 (197)
Q Consensus 70 ~L~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~-~i~~f~~ 118 (197)
.=.+.+.++++.|.+.|++.+.+=++|+-++.=|++++..+| -+.++++
T Consensus 38 ~G~~~l~~i~~~~~~~gI~~lT~YaFS~EN~kR~~~Ev~~Lm~l~~~~l~ 87 (242)
T PRK14838 38 AGAETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAALMSLLLDSIE 87 (242)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeechhhcCCCHHHHHHHHHHHHHHHH
Confidence 334567777888889999999999999999999999999998 4444443
No 37
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=70.11 E-value=16 Score=31.55 Aligned_cols=48 Identities=15% Similarity=0.017 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH-HHHHhHh
Q 029197 71 LRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS-TIFGWRR 118 (197)
Q Consensus 71 L~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~-~i~~f~~ 118 (197)
=.+.+.+++..|.+.|++.|.+=++++-+++=|++++..+| -+..+++
T Consensus 43 G~~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~~~EV~~Lm~L~~~~l~ 91 (249)
T PRK14834 43 GVEALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDLFGLLRLFIR 91 (249)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEEeccccCCCHHHHHHHHHHHHHHHH
Confidence 34566777778889999999999999999999999999888 4444443
No 38
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=69.75 E-value=14 Score=31.87 Aligned_cols=42 Identities=19% Similarity=0.030 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH
Q 029197 70 SLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS 111 (197)
Q Consensus 70 ~L~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~ 111 (197)
.=.+.+.+++..|.+.|++.|.+=++++.+++=|++++..+|
T Consensus 48 ~G~~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev~~Lm 89 (249)
T PRK14831 48 RGVDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFLM 89 (249)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHHHHHH
Confidence 334566777788889999999999999999999999998887
No 39
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=66.06 E-value=20 Score=30.97 Aligned_cols=49 Identities=14% Similarity=0.004 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH-HHHHhHh
Q 029197 70 SLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS-TIFGWRR 118 (197)
Q Consensus 70 ~L~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~-~i~~f~~ 118 (197)
.=.+.++++++.|.+.|++.+.+=++|+-++.=|++++..+| -+.++++
T Consensus 46 ~G~~~l~~i~~~c~~~gI~~lTvyaFS~EN~~Rp~~EV~~Lm~L~~~~l~ 95 (253)
T PRK14832 46 QGARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLMLLFERLLR 95 (253)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHH
Confidence 334567777888889999999999999999999999999988 4433333
No 40
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=65.98 E-value=29 Score=30.40 Aligned_cols=48 Identities=8% Similarity=-0.121 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH-HHHHhHh
Q 029197 71 LRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS-TIFGWRR 118 (197)
Q Consensus 71 L~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~-~i~~f~~ 118 (197)
=.+.+.++++.|.+.|++.|.+=++++-++.=|++++..+| -+.++++
T Consensus 70 G~~~l~~i~~~c~~lGIk~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~ 118 (275)
T PRK14835 70 GVQKAYEVLEWCLELGIPTVTIWVFSTDNFSRSPAEVETLMNLFEREAR 118 (275)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEEEccccCCCHHHHHHHHHHHHHHHH
Confidence 34566777888889999999999999999999999999998 4444443
No 41
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=64.02 E-value=24 Score=30.05 Aligned_cols=47 Identities=13% Similarity=0.053 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH-HHHHhHh
Q 029197 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS-TIFGWRR 118 (197)
Q Consensus 72 ~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~-~i~~f~~ 118 (197)
.+.+.+++..|.+.|++.+.+=++|+-++.=|++++..+| -+..+++
T Consensus 23 ~~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~Lm~l~~~~l~ 70 (229)
T PRK10240 23 AKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALD 70 (229)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHHHHHHHHHHH
Confidence 3456677778889999999999999999999999999988 4444443
No 42
>PHA00684 hypothetical protein
Probab=62.52 E-value=25 Score=27.33 Aligned_cols=45 Identities=13% Similarity=0.094 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH
Q 029197 67 PEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS 111 (197)
Q Consensus 67 ~~~~L~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~ 111 (197)
..+.++..+..-+..|.++.-.+.-+..||||+.||..++-|.+.
T Consensus 54 ~l~~I~~~V~~Fi~ya~~hp~~~F~VT~IGCGiAG~~~~eIAplF 98 (128)
T PHA00684 54 SLPDIGAAVNRFIAYATAHPHLNFQVTRVGCGLAGHLDADIAPMF 98 (128)
T ss_pred cHHHHHHHHHHHHHHHHhCCCcEEEeeeeccccccCCHHHHHHHH
Confidence 367999999999999999999999999999999999999977766
No 43
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=60.91 E-value=29 Score=31.14 Aligned_cols=42 Identities=10% Similarity=-0.036 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH
Q 029197 70 SLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS 111 (197)
Q Consensus 70 ~L~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~ 111 (197)
.=.+.++++++.|.+.|++.+.+=++|+-++.=|++++..+|
T Consensus 47 ~G~~~l~~il~~c~~lGIk~lTlYAFStENwkRp~~EV~~Lm 88 (322)
T PTZ00349 47 MGSKALIQIIEICIKLKIKILSVFSFSLLNYNRSPEEIHFLF 88 (322)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeehhhhCCCHHHHHHHH
Confidence 334567778888899999999999999999999999999988
No 44
>PHA03033 hypothetical protein; Provisional
Probab=59.04 E-value=16 Score=28.46 Aligned_cols=50 Identities=10% Similarity=-0.053 Sum_probs=35.0
Q ss_pred CCCCChHH-HHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccC
Q 029197 1 MLGGGGCD-GAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYG 62 (197)
Q Consensus 1 L~~ggGva-~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~ 62 (197)
+.||.|++ --+.+..|. -+|.+++. ..+|++.+-.-.+ |+|+..++-.|-
T Consensus 30 ~~MGaGIA~v~FKkkyg~--V~eLk~Qk-------k~~GeVAvLk~d~---RyIYYLITKdyi 80 (142)
T PHA03033 30 FILCKDDCFIYIKKKYNS--IKELKKQK-------KKKGEVAYIYKNN---KYIIYIIIADYI 80 (142)
T ss_pred hhcCCChhhhhHHHHhCC--HHHHHhhc-------cCCCeEEEEecCC---EEEEEEEeHHHH
Confidence 46899999 777777776 33355543 4467777666665 899999886653
No 45
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=57.44 E-value=55 Score=28.29 Aligned_cols=47 Identities=11% Similarity=-0.018 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH-HHHHhHh
Q 029197 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS-TIFGWRR 118 (197)
Q Consensus 72 ~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~-~i~~f~~ 118 (197)
.+.+.++++.|.+.|++.|.+=++++-++.=|.+++..+| -+.++++
T Consensus 57 ~~~l~~~~~~~~~~gIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~ 104 (256)
T PRK14828 57 AAKIGEFLGWCDETDVNVVTLYLLSTDNLGRPSEELNPLLDIIEDVVR 104 (256)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhhhcCCCHHHHHHHHHHHHHHHH
Confidence 4567777888889999999999999999999999999988 4444443
No 46
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=53.27 E-value=35 Score=29.47 Aligned_cols=49 Identities=8% Similarity=0.043 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH-HHHHh
Q 029197 68 EASLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS-TIFGW 116 (197)
Q Consensus 68 ~~~L~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~-~i~~f 116 (197)
-..-.+.+.+++..|.+.|++.+.+=++++.++.=|++++..+| -+.++
T Consensus 40 H~~G~~~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~ 89 (253)
T PRK14836 40 HRAGVRAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALMELFLKA 89 (253)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEehhHhhhhhcCCCHHHHHHHHHHHHHH
Confidence 35666788889999999999999999999999999999999888 44443
No 47
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=47.03 E-value=41 Score=30.20 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=30.1
Q ss_pred CCeEEEecCCccCCCCC-cHHHH---HHHHHHHHHHHHHcC-CceEeecc
Q 029197 50 ASHVIHTVGPIYGVTIN-PEASL---RSAYKNSLSLAKANN-IQYIAFPA 94 (197)
Q Consensus 50 ~k~IIH~v~P~~~~~~~-~~~~L---~~~~~~~L~~A~~~~-~~SIAfPa 94 (197)
|+.|+|++.|.-....+ +.+.+ -+...|+|+.|.+.+ ++.|.+.+
T Consensus 79 cdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TS 128 (327)
T KOG1502|consen 79 CDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTS 128 (327)
T ss_pred CCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEec
Confidence 99999999996544332 22233 345667888887776 77777743
No 48
>PLN02214 cinnamoyl-CoA reductase
Probab=46.23 E-value=37 Score=29.68 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=27.8
Q ss_pred CCeEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHcCCceEeec
Q 029197 50 ASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFP 93 (197)
Q Consensus 50 ~k~IIH~v~P~~~~~~~~~~~L~~~~~~~L~~A~~~~~~SIAfP 93 (197)
++.|||.++|.........+.--....++|+.|.+.+++.|.+.
T Consensus 82 ~d~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~ 125 (342)
T PLN02214 82 CDGVFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVIT 125 (342)
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 78999999986422111011122346778888888888777664
No 49
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=45.72 E-value=66 Score=27.73 Aligned_cols=44 Identities=9% Similarity=-0.020 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH
Q 029197 68 EASLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS 111 (197)
Q Consensus 68 ~~~L~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~ 111 (197)
-..-.+.+.+++..|.+.|++.+.+=++++.++.=|.+++..+|
T Consensus 48 h~~G~~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R~~~Ev~~Lm 91 (251)
T PRK14830 48 HKAGMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLM 91 (251)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHH
Confidence 35666788889999999999999999999999999999999888
No 50
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=44.64 E-value=69 Score=23.03 Aligned_cols=49 Identities=4% Similarity=-0.021 Sum_probs=33.0
Q ss_pred HHHHHH-HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHHHHHHhhhhhc
Q 029197 106 CLQMIS-TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIRGILQEI 163 (197)
Q Consensus 106 ~~A~i~-~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~~~~~~~~ 163 (197)
++.+++ .|.+-++. ...++.+| .++.+.+-|.+.+..+.+...++|++.
T Consensus 27 Q~~~v~~ni~~~L~~------aG~~~~dV---v~~~iyl~d~~~~~~~n~~~~~~f~~~ 76 (101)
T cd06155 27 QMESIFSKLREILQS------NGLSLSDI---LYVTLYLRDMSDFAEVNSVYGTFFDKP 76 (101)
T ss_pred HHHHHHHHHHHHHHH------cCCCHHHE---EEEEEEECCHHHHHHHHHHHHHHcCCC
Confidence 344455 55555663 44556655 344667778888999999999999854
No 51
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=42.42 E-value=73 Score=27.34 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=29.7
Q ss_pred CCeEEEecCCccCCCC-Cc---HHHHHHHHHHHHHHHHHcCCceEee
Q 029197 50 ASHVIHTVGPIYGVTI-NP---EASLRSAYKNSLSLAKANNIQYIAF 92 (197)
Q Consensus 50 ~k~IIH~v~P~~~~~~-~~---~~~L~~~~~~~L~~A~~~~~~SIAf 92 (197)
|+.|||+++|.-..+. .. .+.=-+..+++|+.|.+.+++.+.+
T Consensus 67 ~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVy 113 (280)
T PF01073_consen 67 VDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVY 113 (280)
T ss_pred CceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 8999999987433222 11 1223367889999999999987765
No 52
>KOG4506 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.06 E-value=42 Score=31.12 Aligned_cols=65 Identities=18% Similarity=0.120 Sum_probs=44.9
Q ss_pred ccCCCcEEEeecCCCC-CCeEEEecCCc-cCCCC-CcHHHHHHHHHHHHHHHHHcCCceEeecccccC
Q 029197 34 RCPTGEARITPGFKLP-ASHVIHTVGPI-YGVTI-NPEASLRSAYKNSLSLAKANNIQYIAFPAISCG 98 (197)
Q Consensus 34 ~~~~G~vvvT~ag~L~-~k~IIH~v~P~-~~~~~-~~~~~L~~~~~~~L~~A~~~~~~SIAfPaLgtG 98 (197)
.+-+|++.++..-++. ...++|.+.-. ..++. +..+---.-++|+++.|..+++++|.+|.|-..
T Consensus 416 nllP~eal~qd~sc~seihiafHL~VDd~lkS~eInaR~P~iaGlRNIiktaar~d~sTIhIPLLLid 483 (598)
T KOG4506|consen 416 NLLPGEALIQDHSCLSEIHIAFHLCVDDHLKSGEINARDPAIAGLRNIIKTAARHDISTIHIPLLLID 483 (598)
T ss_pred hcCchhhhhcCccccchhheeeEeeehhhhhcCCccCcCcHHHHHHHHHHHHHhcCCceeeeeeEEec
Confidence 4557899999888776 44566766532 22222 222333346899999999999999999998764
No 53
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=34.39 E-value=1.3e+02 Score=27.28 Aligned_cols=44 Identities=16% Similarity=0.088 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEee--cccccCC-CCccHHHHHHHH
Q 029197 68 EASLRSAYKNSLSLAKANNIQYIAF--PAISCGL-YWCTLFCLQMIS 111 (197)
Q Consensus 68 ~~~L~~~~~~~L~~A~~~~~~SIAf--PaLgtG~-~g~p~~~~A~i~ 111 (197)
...+...+++.++.+.+.|++-|.+ |+||+|. .++..+.+.+++
T Consensus 141 a~~ia~~l~~e~~~l~~~gv~~IqIDEP~l~~~~~~~~~~~~~i~Al 187 (344)
T PRK06052 141 AKSVERFVENAIKSAKNFKIKTISIDEPSLGINPEIQFSDDEIISAL 187 (344)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEecCcccccCCccccCHHHHHHHH
Confidence 3677788888888889999999999 9999997 677888887777
No 54
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=33.65 E-value=1.6e+02 Score=25.23 Aligned_cols=43 Identities=14% Similarity=0.085 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH
Q 029197 69 ASLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS 111 (197)
Q Consensus 69 ~~L~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~ 111 (197)
..-...+++++..|.+.|++.+.+=+++|.+..=|.+++..+|
T Consensus 43 ~~G~~~~~~i~~~~~~lgik~ltlyafSteN~~Rp~~Ev~~lm 85 (245)
T COG0020 43 KAGAKALREILEWCLELGIKYLTLYAFSTENWKRPKEEVSFLM 85 (245)
T ss_pred HHhHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHH
Confidence 4455677777888888999999999999999999999998887
No 55
>cd06154 YjgF_YER057c_UK114_like_6 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=33.13 E-value=1.3e+02 Score=22.21 Aligned_cols=43 Identities=5% Similarity=0.108 Sum_probs=28.5
Q ss_pred HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHHHHHHhhhhhc
Q 029197 112 TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIRGILQEI 163 (197)
Q Consensus 112 ~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~~~~~~~~ 163 (197)
-+..-++. ...++++| .++.+.+.|.+.+..+.+.+.++|++.
T Consensus 52 ni~~~L~~------aG~~~~dV---vk~~vyl~d~~~~~~~~~~~~~~f~~~ 94 (119)
T cd06154 52 IIEAALAE------AGASLEDV---VRTRMYVTDIADFEAVGRAHGEVFGDI 94 (119)
T ss_pred HHHHHHHH------cCCCHHHE---EEEEEEECCHHHHHHHHHHHHHHcCCC
Confidence 44444553 34455554 233666677888999999999999763
No 56
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=32.81 E-value=67 Score=23.76 Aligned_cols=41 Identities=15% Similarity=0.046 Sum_probs=31.8
Q ss_pred CeEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHcCCceEeecc
Q 029197 51 SHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPA 94 (197)
Q Consensus 51 k~IIH~v~P~~~~~~~~~~~L~~~~~~~L~~A~~~~~~SIAfPa 94 (197)
-.|-|+..|.|-.+.- .=+..+..+|+.|.+.+.+-|.++.
T Consensus 40 i~i~HT~V~d~lrGqG---ia~~L~~~al~~ar~~g~kiiP~Cs 80 (99)
T COG2388 40 IIIDHTYVPDELRGQG---IAQKLVEKALEEAREAGLKIIPLCS 80 (99)
T ss_pred EEEecCcCCHHHcCCc---HHHHHHHHHHHHHHHcCCeEcccch
Confidence 4677999998877642 4455678899999999999887754
No 57
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=32.39 E-value=1.1e+02 Score=27.51 Aligned_cols=45 Identities=18% Similarity=0.119 Sum_probs=29.7
Q ss_pred CCCeEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHcCCceEeec
Q 029197 49 PASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFP 93 (197)
Q Consensus 49 ~~k~IIH~v~P~~~~~~~~~~~L~~~~~~~L~~A~~~~~~SIAfP 93 (197)
.++.|||++++.+.......+.-.....++++.|.+.+++.+.+-
T Consensus 136 ~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~i 180 (390)
T PLN02657 136 PVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLL 180 (390)
T ss_pred CCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEE
Confidence 479999998875533222122223456788888888998877664
No 58
>KOG3716 consensus Carnitine O-acyltransferase CPTI [Lipid transport and metabolism]
Probab=32.24 E-value=88 Score=30.98 Aligned_cols=58 Identities=19% Similarity=0.323 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHHHHHHHHcCCceEeecccccCC---CCccHHHHHHHH-HHHHhHhhccccc
Q 029197 67 PEASLRSAYKNSLSLAKANNIQYIAFPAISCGL---YWCTLFCLQMIS-TIFGWRRQGNCCL 124 (197)
Q Consensus 67 ~~~~L~~~~~~~L~~A~~~~~~SIAfPaLgtG~---~g~p~~~~A~i~-~i~~f~~~~~~~~ 124 (197)
..+.++.||..+=..+++..+.+++|-..|-|. .|++||.-.+++ -+..|.+++.||.
T Consensus 517 ~~~~I~~~~~~~~~l~~Dv~~~~~~f~dfGKg~iKKc~vSPDafiQmAlQLA~yrDqGkF~l 578 (764)
T KOG3716|consen 517 CLDEIERAYEAAKKLADDVDLHSLVFTDFGKGFIKKCGVSPDAFIQMALQLAYYRDQGKFCL 578 (764)
T ss_pred HHHHHHHHHHHHHHHhhhchheeeeehhhcchhHHhcCCCchHHHHHHHHHHHHhhcCeEEE
Confidence 467888888888888999999999999999997 789999888877 7777888765554
No 59
>CHL00194 ycf39 Ycf39; Provisional
Probab=30.71 E-value=1.2e+02 Score=26.02 Aligned_cols=43 Identities=16% Similarity=0.084 Sum_probs=28.6
Q ss_pred CCeEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHcCCceEee
Q 029197 50 ASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAF 92 (197)
Q Consensus 50 ~k~IIH~v~P~~~~~~~~~~~L~~~~~~~L~~A~~~~~~SIAf 92 (197)
++.|||++++.|.......+.=.....+.++.|.+.+++.+.+
T Consensus 65 ~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~ 107 (317)
T CHL00194 65 VTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIF 107 (317)
T ss_pred CCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEE
Confidence 7899999876654322111122345678888888999987766
No 60
>PTZ00325 malate dehydrogenase; Provisional
Probab=29.73 E-value=1.4e+02 Score=26.52 Aligned_cols=43 Identities=9% Similarity=0.055 Sum_probs=34.0
Q ss_pred CCeEEEecCCccCCCCCcHHHHHH---HHHHHHHHHHHcCCceEee
Q 029197 50 ASHVIHTVGPIYGVTINPEASLRS---AYKNSLSLAKANNIQYIAF 92 (197)
Q Consensus 50 ~k~IIH~v~P~~~~~~~~~~~L~~---~~~~~L~~A~~~~~~SIAf 92 (197)
++.|+|++|+.-..+.+..+.|.. .++++++...+.+.+.|.+
T Consensus 77 aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~ivi 122 (321)
T PTZ00325 77 ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVG 122 (321)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 899999999865444344567777 8899999999999988877
No 61
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=27.17 E-value=97 Score=23.79 Aligned_cols=36 Identities=31% Similarity=0.407 Sum_probs=28.5
Q ss_pred CCCeEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHcCCceEee
Q 029197 49 PASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAF 92 (197)
Q Consensus 49 ~~k~IIH~v~P~~~~~~~~~~~L~~~~~~~L~~A~~~~~~SIAf 92 (197)
.++.|+|+++|.+. + ...++++++.+.+.+.+.+.+
T Consensus 60 ~~d~vi~~~~~~~~------~--~~~~~~~~~a~~~~~~~~~v~ 95 (183)
T PF13460_consen 60 GADAVIHAAGPPPK------D--VDAAKNIIEAAKKAGVKRVVY 95 (183)
T ss_dssp TSSEEEECCHSTTT------H--HHHHHHHHHHHHHTTSSEEEE
T ss_pred hcchhhhhhhhhcc------c--cccccccccccccccccccee
Confidence 38999999988764 1 667778888888889887776
No 62
>PF02807 ATP-gua_PtransN: ATP:guanido phosphotransferase, N-terminal domain; InterPro: IPR022413 This entry represents the N-terminal domain of ATP:guanido phosphotransferase, which has an all-alpha fold consisting of an irregular array of 6 short helices []. ATP:guanido phosphotransferases are a family of structurally and functionally related enzymes [, ] that reversibly catalyse the transfer of phosphate between ATP and various phosphogens. The enzymes belonging to this family include: Glycocyamine kinase (2.7.3.1 from EC), which catalyses the transfer of phosphate from ATP to guanidoacetate. Arginine kinase (2.7.3.3 from EC), which catalyses the transfer of phosphate from ATP to arginine. Taurocyamine kinase (2.7.3.4 from EC), an annelid-specific enzyme that catalyses the transfer of phosphate from ATP to taurocyamine. Lombricine kinase (2.7.3.5 from EC), an annelid-specific enzyme that catalyses the transfer of phosphate from ATP to lombricine. Smc74, a cercaria-specific enzyme from Schistosoma mansoni []. Creatine kinase (2.7.3.2 from EC) (CK) [, ], which catalyses the reversible transfer of high energy phosphate from ATP to creatine, generating phosphocreatine and ADP. Creatine kinase plays an important role in energy metabolism of vertebrates. There are at least four different, but very closely related, forms of CK. Two isozymes, M (muscle) and B (brain), are cytosolic, while the other two are mitochondrial. In sea urchins there is a flagellar isozyme, which consists of the triplication of a CK-domain. A cysteine residue is implicated in the catalytic activity of these enzymes and the region around this active site residue is highly conserved.; GO: 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 1U6R_B 2CRK_A 2J1Q_A 1QH4_C 1QK1_F 2GL6_F 3L2F_M 3L2D_D 3L2G_B 3L2E_B ....
Probab=26.66 E-value=60 Score=22.89 Aligned_cols=24 Identities=4% Similarity=0.231 Sum_probs=18.0
Q ss_pred EEEecchhHHHHHHHHHHhhhhhc
Q 029197 140 KLMSFEQLVYQSLDQKIRGILQEI 163 (197)
Q Consensus 140 ~~v~~d~~~~~~f~~~~~~~~~~~ 163 (197)
-++.-|++.|+.|.+.|..++++.
T Consensus 49 G~~AgD~esY~vF~~lfdpvI~dy 72 (76)
T PF02807_consen 49 GIYAGDEESYDVFKELFDPVIEDY 72 (76)
T ss_dssp ----SSTTHHHHTHHHHHHHHHHH
T ss_pred ceeecChhHHHHHHHHHHHHHHHH
Confidence 889999999999999999987763
No 63
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=25.23 E-value=2.2e+02 Score=23.95 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=26.7
Q ss_pred CCeEEEecCCccCCCCCcH-HHH---HHHHHHHHHHHHHc-CCceEeec
Q 029197 50 ASHVIHTVGPIYGVTINPE-ASL---RSAYKNSLSLAKAN-NIQYIAFP 93 (197)
Q Consensus 50 ~k~IIH~v~P~~~~~~~~~-~~L---~~~~~~~L~~A~~~-~~~SIAfP 93 (197)
+++|||.++|......... ..+ -....++|+.|.+. +++.+.+.
T Consensus 77 ~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~ 125 (322)
T PLN02662 77 CEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVT 125 (322)
T ss_pred CCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEc
Confidence 6899999998543211111 222 23456777777666 77777764
No 64
>TIGR03610 RutC pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.
Probab=24.32 E-value=1.9e+02 Score=21.75 Aligned_cols=37 Identities=5% Similarity=0.009 Sum_probs=25.6
Q ss_pred cccCcceeccccceEEEecchhHHHHHHHHHHhhhhhcCC
Q 029197 126 HLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIRGILQEIGL 165 (197)
Q Consensus 126 ~~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~~~~~~~~~~ 165 (197)
...++.+| .++.+.+-|.+.+..+.+...++|+...|
T Consensus 66 aG~~~~dv---v~~~iyl~d~~~~~~~~~~~~~~f~~~~P 102 (127)
T TIGR03610 66 AGGTMDDV---TFNHIFIRDWADYAAINEVYAEYFPGEKP 102 (127)
T ss_pred cCCCHHHE---EEEEEEEcCHHHHHHHHHHHHHHcCCCCC
Confidence 34455554 23366777878899999999999975443
No 65
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=23.95 E-value=6e+02 Score=23.75 Aligned_cols=105 Identities=10% Similarity=0.066 Sum_probs=52.9
Q ss_pred CCc-cCCCCCcHHHHHHHHHHHHHHHHHcCCceEee-cccccCCCCcc--HHHHHHHH-HHHHhHhhcccccccccCcce
Q 029197 58 GPI-YGVTINPEASLRSAYKNSLSLAKANNIQYIAF-PAISCGLYWCT--LFCLQMIS-TIFGWRRQGNCCLFHLEDVKN 132 (197)
Q Consensus 58 ~P~-~~~~~~~~~~L~~~~~~~L~~A~~~~~~SIAf-PaLgtG~~g~p--~~~~A~i~-~i~~f~~~~~~~~~~~~~l~~ 132 (197)
||+ |+. ...++.+.++-.-+ ..-.+-|++.|-+ |++++-.-+.| .+.+|+-. .+.++.++. .........
T Consensus 89 GPn~Wq~-lpa~eAM~~A~~li-~ayV~AGF~kIHLD~Sm~ca~d~~~L~d~~vAeRaa~L~~~aE~~---~~~~~~~~~ 163 (420)
T TIGR02810 89 GPNPWQH-LPADEAMAKAAALV-DAYVEAGFTKIHLDASMGCAGDPAPLDDATVAERAARLCAVAEAA---ATDRRGETK 163 (420)
T ss_pred CCccccC-CCHHHHHHHHHHHH-HHHHHcCCceEEecCCCCccCCCccCCHHHHHHHHHHHHHHHHHH---HHHhcCCCC
Confidence 785 874 23344444433222 2223679999998 77776554444 33444422 333333310 000111222
Q ss_pred e--ccccce-----------EEEecchhHHHHHHHHHHhhhhhcCCCc
Q 029197 133 F--EVGTSS-----------KLMSFEQLVYQSLDQKIRGILQEIGLQN 167 (197)
Q Consensus 133 I--~~~~~~-----------~~v~~d~~~~~~f~~~~~~~~~~~~~~~ 167 (197)
+ .+||-| .+-..+.+.+..|.+..++.|.+.|++.
T Consensus 164 ~vYvIGTEvP~pGGa~~~~~~~~vTs~e~~~~ti~~h~~af~~~GL~~ 211 (420)
T TIGR02810 164 PVYVIGTEVPVPGGALEALQTLAVTTPEAARATLRAHRKAFAARGLED 211 (420)
T ss_pred CeEEeccccCCCCchhhhccccCCCCHHHHHHHHHHHHHHHHHcCchh
Confidence 3 023322 1112566778888888888888777644
No 66
>cd06153 YjgF_YER057c_UK114_like_5 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=23.91 E-value=2.4e+02 Score=20.88 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=20.2
Q ss_pred EEEecchhHHHHHHHHHHhhhhhc
Q 029197 140 KLMSFEQLVYQSLDQKIRGILQEI 163 (197)
Q Consensus 140 ~~v~~d~~~~~~f~~~~~~~~~~~ 163 (197)
++.+.|.+.+..|.+...++|++.
T Consensus 68 ~vyl~d~~~~~~~~~v~~~~f~~~ 91 (114)
T cd06153 68 KVYLRDREDLPAVRAILAARLGPA 91 (114)
T ss_pred EEEEccHHHHHHHHHHHHHHcCCC
Confidence 667778888999999999999754
No 67
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=23.54 E-value=1.3e+02 Score=26.20 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=29.0
Q ss_pred CCeEEEecCCccCCCC--CcH---HHHHHHHHHHHHHHHHcCCceEeecc
Q 029197 50 ASHVIHTVGPIYGVTI--NPE---ASLRSAYKNSLSLAKANNIQYIAFPA 94 (197)
Q Consensus 50 ~k~IIH~v~P~~~~~~--~~~---~~L~~~~~~~L~~A~~~~~~SIAfPa 94 (197)
+++|||.++....... +.. +.=-....++|+.|.+.+++.+.+++
T Consensus 91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~S 140 (348)
T PRK15181 91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAA 140 (348)
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEee
Confidence 6899999975332111 111 12224566888888889998888865
No 68
>PRK02866 cyanate hydratase; Validated
Probab=22.44 E-value=1.5e+02 Score=23.64 Aligned_cols=32 Identities=13% Similarity=0.002 Sum_probs=27.5
Q ss_pred HHHHHcCCceEeecccccCCCCccHHHHHHHH
Q 029197 80 SLAKANNIQYIAFPAISCGLYWCTLFCLQMIS 111 (197)
Q Consensus 80 ~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~ 111 (197)
+.|++.|++-+.+-++--|....+++++..+.
T Consensus 23 ~IA~~iG~S~v~vaaa~lGQ~~ls~e~A~kla 54 (147)
T PRK02866 23 DIAEAIGLSEVWVTAALLGQMTLPAEEAEKVA 54 (147)
T ss_pred HHHHHhCCCHHHHHHHHhCCCCCCHHHHHHHH
Confidence 35678899999999999999999999887765
No 69
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=22.18 E-value=2.4e+02 Score=23.89 Aligned_cols=44 Identities=16% Similarity=0.302 Sum_probs=26.5
Q ss_pred CCeEEEecCCccCCCCC-cHHHHH---HHHHHHHHHHHHc-CCceEeec
Q 029197 50 ASHVIHTVGPIYGVTIN-PEASLR---SAYKNSLSLAKAN-NIQYIAFP 93 (197)
Q Consensus 50 ~k~IIH~v~P~~~~~~~-~~~~L~---~~~~~~L~~A~~~-~~~SIAfP 93 (197)
++.|||.++|......+ ....+. ....++|+.|.+. +++.|.+.
T Consensus 78 ~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~ 126 (322)
T PLN02986 78 CDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILT 126 (322)
T ss_pred CCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEe
Confidence 79999999985432111 112222 3446777777765 67777764
No 70
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=20.36 E-value=67 Score=29.69 Aligned_cols=66 Identities=11% Similarity=-0.098 Sum_probs=40.3
Q ss_pred CCCCCCeEEEecCCccCCCC--C---cHHHHHHHHHHHHHHHHHcCC-------------c--eEeecccccCCCCccHH
Q 029197 46 FKLPASHVIHTVGPIYGVTI--N---PEASLRSAYKNSLSLAKANNI-------------Q--YIAFPAISCGLYWCTLF 105 (197)
Q Consensus 46 g~L~~k~IIH~v~P~~~~~~--~---~~~~L~~~~~~~L~~A~~~~~-------------~--SIAfPaLgtG~~g~p~~ 105 (197)
|-|.+.+|+|+......... + ..+...+-|.++++-.+++=- + .--+|.+|+--..+|..
T Consensus 25 gLLAvpFVLhs~~~~~~~~~~~~~~~~a~~~~~rYaeIf~dvE~lI~~hi~~~~~~~~~~SrL~~LVPsiG~FFT~LPL~ 104 (408)
T PF06437_consen 25 GLLAVPFVLHSQPTNVFQEDDEDLAATAEEAHRRYAEIFRDVEKLIDDHIEHDKRNDPGRSRLKQLVPSIGTFFTPLPLE 104 (408)
T ss_pred HhhcCCeeeccCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccchHHHhCCCcccccCCChHH
Confidence 45678999999765543222 1 134455566666655432111 1 13579999888889998
Q ss_pred HHHHHH
Q 029197 106 CLQMIS 111 (197)
Q Consensus 106 ~~A~i~ 111 (197)
+|-...
T Consensus 105 ~AF~~~ 110 (408)
T PF06437_consen 105 EAFLEQ 110 (408)
T ss_pred HHHHHh
Confidence 876655
No 71
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=20.18 E-value=5e+02 Score=24.03 Aligned_cols=68 Identities=9% Similarity=0.011 Sum_probs=40.6
Q ss_pred EeecCCCCCCeEEEecCC--ccCCCC------------CcHHHHHHHHHHHHHHHHHcCC--ceEeecccccCCCCccHH
Q 029197 42 ITPGFKLPASHVIHTVGP--IYGVTI------------NPEASLRSAYKNSLSLAKANNI--QYIAFPAISCGLYWCTLF 105 (197)
Q Consensus 42 vT~ag~L~~k~IIH~v~P--~~~~~~------------~~~~~L~~~~~~~L~~A~~~~~--~SIAfPaLgtG~~g~p~~ 105 (197)
+.+.+.++.|+.+=+.|- .+.+.. ++...|++-+.++++.|+...- .-..|-..|.|-.|+ +
T Consensus 92 ~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGV--E 169 (405)
T COG1252 92 LADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGV--E 169 (405)
T ss_pred eCCCccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHH--H
Confidence 333478999999988772 222211 1234666667788888874433 334455578887776 4
Q ss_pred HHHHHH
Q 029197 106 CLQMIS 111 (197)
Q Consensus 106 ~~A~i~ 111 (197)
.++++.
T Consensus 170 lAgeL~ 175 (405)
T COG1252 170 LAGELA 175 (405)
T ss_pred HHHHHH
Confidence 444544
Done!