Query 029197
Match_columns 197
No_of_seqs 124 out of 1290
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 14:40:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029197.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029197hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q71_A Poly [ADP-ribose] polym 100.0 9.8E-39 3.4E-43 267.0 17.6 147 2-162 66-217 (221)
2 3q6z_A Poly [ADP-ribose] polym 100.0 4.2E-39 1.4E-43 268.1 15.0 149 1-161 62-214 (214)
3 1spv_A Putative polyprotein/ph 100.0 2.7E-38 9.3E-43 257.5 17.8 148 1-163 28-178 (184)
4 2xd7_A Core histone macro-H2A. 100.0 2.6E-38 8.7E-43 259.5 16.9 144 1-158 47-192 (193)
5 1yd9_A Core histone macro-H2A. 100.0 5.4E-38 1.8E-42 257.6 15.6 145 1-159 44-190 (193)
6 2x47_A Macro domain-containing 100.0 2.4E-37 8.2E-42 260.8 17.6 144 1-162 87-234 (235)
7 4abl_A Poly [ADP-ribose] polym 100.0 2.9E-37 9.9E-42 251.5 17.0 133 1-159 47-181 (183)
8 3kh6_A Poly [ADP-ribose] polym 100.0 1.5E-35 5.2E-40 244.2 16.8 135 1-161 58-194 (199)
9 2dx6_A Hypothetical protein TT 100.0 2.5E-34 8.4E-39 228.7 15.7 131 1-156 27-159 (159)
10 1vhu_A Hypothetical protein AF 100.0 6E-34 2.1E-38 236.5 13.2 142 1-161 46-202 (211)
11 3eti_A X (ADRP) domain, macro 100.0 9.9E-34 3.4E-38 227.8 12.7 127 1-157 39-167 (168)
12 3gpg_A NSP3, non-structural pr 100.0 2E-33 6.7E-38 226.1 11.5 129 1-158 35-166 (168)
13 3gqe_A Non-structural protein 100.0 4.2E-32 1.4E-36 218.3 11.9 130 1-159 29-161 (168)
14 2acf_A Replicase polyprotein 1 100.0 1.9E-31 6.5E-36 217.0 11.3 128 1-163 49-178 (182)
15 3ejg_A Non-structural protein 100.0 3.9E-31 1.3E-35 216.7 12.8 124 1-157 67-192 (193)
16 3ejf_A Non-structural protein 100.0 1.1E-30 3.6E-35 211.5 10.5 127 1-156 47-175 (176)
17 2vri_A Non-structural protein 100.0 3.7E-30 1.3E-34 208.0 12.0 125 1-158 46-172 (174)
18 1njr_A 32.1 kDa protein in ADH 100.0 5.7E-31 2E-35 227.1 7.3 160 1-177 83-268 (284)
19 4gua_A Non-structural polyprot 99.9 3.9E-26 1.3E-30 209.6 12.7 129 1-159 369-501 (670)
20 2eee_A Uncharacterized protein 99.9 3.3E-21 1.1E-25 151.7 11.1 98 1-111 35-133 (149)
21 2jyc_A Uncharacterized protein 99.8 8.9E-21 3.1E-25 151.0 12.0 98 1-111 46-144 (160)
22 2fg1_A Conserved hypothetical 99.8 5.5E-20 1.9E-24 145.8 11.1 105 1-111 32-142 (158)
23 3sig_A PArg, poly(ADP-ribose) 99.0 3.2E-10 1.1E-14 97.2 7.1 93 53-158 172-276 (277)
24 2kix_A BM2 protein; channel, t 78.1 0.26 8.9E-06 27.8 -0.9 20 165-185 2-21 (33)
25 3ugs_B Undecaprenyl pyrophosph 77.6 5.9 0.0002 32.5 6.7 47 72-118 36-83 (225)
26 2vg0_A Short-chain Z-isoprenyl 74.2 9.9 0.00034 31.0 7.2 47 72-118 33-80 (227)
27 4h8e_A Undecaprenyl pyrophosph 67.9 8.5 0.00029 32.2 5.5 50 69-118 51-101 (256)
28 3sgv_B Undecaprenyl pyrophosph 67.9 4.8 0.00016 33.6 4.0 50 69-118 44-94 (253)
29 2vg3_A Undecaprenyl pyrophosph 49.9 26 0.00089 29.6 5.5 48 71-118 84-132 (284)
30 2d2r_A Undecaprenyl pyrophosph 48.4 20 0.00068 29.6 4.5 47 72-118 45-92 (245)
31 3dhn_A NAD-dependent epimerase 42.5 29 0.00099 26.4 4.4 44 50-94 68-111 (227)
32 1f75_A Undecaprenyl pyrophosph 34.9 25 0.00087 29.0 3.0 41 71-111 49-89 (249)
33 3qas_B Undecaprenyl pyrophosph 34.6 29 0.00099 28.7 3.3 40 72-111 47-86 (253)
34 2rbg_A Putative uncharacterize 34.5 99 0.0034 22.8 5.8 80 68-175 14-95 (126)
35 3h2s_A Putative NADH-flavin re 26.5 78 0.0027 23.7 4.4 42 49-93 62-103 (224)
36 2ewc_A Conserved hypothetical 25.3 1.9E+02 0.0064 20.7 6.2 33 127-162 57-89 (126)
37 2cvl_A TTHA0137, protein trans 23.5 1.7E+02 0.0057 20.7 5.5 24 140-163 74-97 (124)
38 2b33_A Protein synthesis inhib 23.2 2E+02 0.0068 21.0 6.0 34 127-163 78-111 (140)
39 3r0p_A L-PSP putative endoribo 22.5 1.8E+02 0.0061 20.6 5.5 33 127-162 68-100 (127)
40 3ew7_A LMO0794 protein; Q8Y8U8 21.9 81 0.0028 23.5 3.7 43 49-95 61-103 (221)
41 1x25_A Hypothetical UPF0076 pr 21.9 1.8E+02 0.0063 20.6 5.5 33 127-162 68-100 (128)
42 3v4d_A Aminoacrylate peracid r 21.7 1.8E+02 0.0063 20.8 5.5 33 127-162 73-105 (134)
43 3m1x_A Putative endoribonuclea 21.5 2.3E+02 0.0079 20.9 6.2 42 112-162 80-121 (148)
44 1jd1_A Hypothetical 13.9 kDa p 21.4 2E+02 0.0067 20.5 5.6 33 127-162 68-100 (129)
45 3i7t_A RV2704, putative unchar 21.0 2.3E+02 0.0078 21.1 6.0 24 140-163 70-93 (149)
46 2cwj_A Putative endonuclease; 20.9 1.7E+02 0.0058 20.6 5.1 24 140-163 70-93 (123)
47 1qah_A Perchloric acid soluble 20.7 1.7E+02 0.0059 21.1 5.2 33 127-162 69-101 (136)
No 1
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}
Probab=100.00 E-value=9.8e-39 Score=267.00 Aligned_cols=147 Identities=18% Similarity=0.288 Sum_probs=132.9
Q ss_pred CCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCCC-cHHHHHHHHHHHHH
Q 029197 2 LGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTIN-PEASLRSAYKNSLS 80 (197)
Q Consensus 2 ~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~~-~~~~L~~~~~~~L~ 80 (197)
.++|||++||+++||++|++||++... ++++++|++++|++|+|+||||||+|||.|..+.. +.+.|++||+++|+
T Consensus 66 ~~gGGV~~AI~~aaG~~L~~ec~~~~~---~~~~~~G~a~iT~g~~Lp~k~VIHtVgP~~~~~~~~~~~~L~~~y~~~L~ 142 (221)
T 3q71_A 66 LSRGPLSKSLLEKAGPELQEELDTVGQ---GVAVSMGTVLKTSSWNLDCRYVLHVVAPEWRNGSTSSLKIMEDIIRECME 142 (221)
T ss_dssp TTSSHHHHHHHHHHCTHHHHHHHHHHH---TSCCCTTCEEEEECTTSSSSEEEEECCCCCTTTCHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHHHHhc---cCCCCCCeEEEEcCCCCCCCEEEEeCCCCCcCCCchHHHHHHHHHHHHHH
Confidence 478999999999999999999999862 45899999999999999999999999999987653 46899999999999
Q ss_pred HHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHhhcccccccccCcceeccccceEEEecch--hHHHHHHHHH
Q 029197 81 LAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQ--LVYQSLDQKI 156 (197)
Q Consensus 81 ~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~--~~~~~f~~~~ 156 (197)
.|++++++|||||+||||++|||++++|++| +|++|+++ ....++++| +||++++ ++|++|.++|
T Consensus 143 ~A~e~~i~SIAfPaIsTG~~G~P~~~aA~i~~~~v~~fl~~-----~~~~~l~~V------~fv~f~~d~~~~~~f~~~l 211 (221)
T 3q71_A 143 ITESLSLKSIAFPAIGTGNLGFPKNIFAELIISEVFKFSSK-----NQLKTLQEV------HFLLHPSDHENIQAFSDEF 211 (221)
T ss_dssp HHHHTTCCEEEEECTTSSTTCCCHHHHHHHHHHHHHHHHHH-----CCCSSCCEE------EEEECTTCHHHHHHHHHHH
T ss_pred HHHHhCCceEeeccccCCCCCCCHHHHHHHHHHHHHHHHHH-----cCCCCCCEE------EEEEeCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999988 99999985 235789999 9999964 6789999999
Q ss_pred Hhhhhh
Q 029197 157 RGILQE 162 (197)
Q Consensus 157 ~~~~~~ 162 (197)
+++++.
T Consensus 212 ~~r~~~ 217 (221)
T 3q71_A 212 ARRANG 217 (221)
T ss_dssp HHHHC-
T ss_pred HHHccC
Confidence 998764
No 2
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens}
Probab=100.00 E-value=4.2e-39 Score=268.14 Aligned_cols=149 Identities=28% Similarity=0.309 Sum_probs=133.5
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCCC--cHHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTIN--PEASLRSAYKNS 78 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~~--~~~~L~~~~~~~ 78 (197)
|.++|||++||+++||++|++||+++.+. + +++++|++++|++|+|+||||||+|||.|..+.. +.+.|++||+++
T Consensus 62 l~~ggGV~~AI~~aaG~~l~~ec~~~~~~-~-g~~~~G~a~iT~~~~L~~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~ 139 (214)
T 3q6z_A 62 LKHYGGLAAALSKAAGPELQADCDQIVKR-E-GRLLPGNATISKAGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLS 139 (214)
T ss_dssp CCCCSHHHHHHHHHHCTHHHHHHHHHHHH-H-CCCCTTCEEEEECTTSSSSEEEEEECCCCCGGGHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHhhhHHHHHHHHHHHHH-c-CCCCCCeEEEEcCCCCCCCEEEEecCCcccCCCcchHHHHHHHHHHHH
Confidence 67999999999999999999999998642 2 3899999999999999999999999999987652 357999999999
Q ss_pred HHHHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHHHHH
Q 029197 79 LSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKI 156 (197)
Q Consensus 79 L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~ 156 (197)
|+.|++++++|||||+||||++|||++++|++| +|.+|++++ ....++++| +||++|++++++|.+++
T Consensus 140 L~~A~~~~i~SIAfP~IstG~~g~P~~~aA~i~~~av~~fl~~~----~~~~~l~~V------~fv~~d~~~~~~f~~~l 209 (214)
T 3q6z_A 140 LCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQFK----KDGHCLKEI------YLVDVSEKTVEAFAEAV 209 (214)
T ss_dssp HHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHTSSC----C--CCCCEE------EEEESSHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEECcccCCCCCCCHHHHHHHHHHHHHHHHHhc----CCCCCCCEE------EEEeCCHHHHHHHHHHH
Confidence 999999999999999999999999999999988 999998741 124789999 99999999999999999
Q ss_pred Hhhhh
Q 029197 157 RGILQ 161 (197)
Q Consensus 157 ~~~~~ 161 (197)
+++|.
T Consensus 210 ~~~f~ 214 (214)
T 3q6z_A 210 KTVFK 214 (214)
T ss_dssp HHHC-
T ss_pred HHhhC
Confidence 98863
No 3
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2
Probab=100.00 E-value=2.7e-38 Score=257.53 Aligned_cols=148 Identities=38% Similarity=0.574 Sum_probs=132.8
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCC-CcHHHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTI-NPEASLRSAYKNSL 79 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~-~~~~~L~~~~~~~L 79 (197)
|.+||||++||++++|+++++||+++.+. ++++++|++++|++|+||||||||+|||.|+++. .+.+.|++||+++|
T Consensus 28 l~~ggGv~~aI~~aaG~~l~~e~~~~~~~--~g~~~~G~a~iT~~~~L~~k~VIH~vgP~~~~~~~~~~~~L~~~y~~~L 105 (184)
T 1spv_A 28 LMGGGGVDGAIHRAAGPALLDACLKVRQQ--QGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSL 105 (184)
T ss_dssp CSCCSHHHHHHHHHHCHHHHHHHHHHHHH--HCSCCTTCEEEECCTTSSSSEEEEECCCCCSSSSSSHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHhCHHHHHHHHHHHHh--cCCCCCCCEEEeeCCCCCCCEEEEEcCCcccCCCcchHHHHHHHHHHHH
Confidence 67999999999999999999999998642 2389999999999999999999999999998754 45789999999999
Q ss_pred HHHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHHHHHH
Q 029197 80 SLAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIR 157 (197)
Q Consensus 80 ~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~~ 157 (197)
+.|.+++++|||||+||||++|||++++|++| ++.+|+++ + .++++| +||++|+++++.|.+.+.
T Consensus 106 ~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~------~-~~~~~V------~~v~~~~~~~~~~~~~l~ 172 (184)
T 1spv_A 106 RLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITR------H-ALPEQV------YFVCYDEENAHLYERLLT 172 (184)
T ss_dssp HHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHH------C-CSSSEE------EEEESSHHHHHHHHHHHH
T ss_pred HHHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHh------C-CCCCEE------EEEECCHHHHHHHHHHHH
Confidence 99999999999999999999999999999988 99999984 2 368899 999999999999999999
Q ss_pred hhhhhc
Q 029197 158 GILQEI 163 (197)
Q Consensus 158 ~~~~~~ 163 (197)
.++++-
T Consensus 173 ~~~~~~ 178 (184)
T 1spv_A 173 QQGDEE 178 (184)
T ss_dssp CC----
T ss_pred HhCCcc
Confidence 988753
No 4
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens}
Probab=100.00 E-value=2.6e-38 Score=259.51 Aligned_cols=144 Identities=22% Similarity=0.261 Sum_probs=132.3
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCCCcHHHHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLS 80 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~~~~~~L~~~~~~~L~ 80 (197)
|.|||||++||++++|++|++||+++.+. +| ++++|++++|++|+|+||||||+|||.|..+ .+.+.|++||+++|+
T Consensus 47 l~~ggGv~~aI~~aaG~~l~~ec~~~~~~-~g-~~~~G~a~iT~~~~L~~k~VIH~vgP~~~~~-~~~~~L~~~y~~~L~ 123 (193)
T 2xd7_A 47 IDLKEDIGKALEKAGGKEFLETVKELRKS-QG-PLEVAEAAVSQSSGLAAKFVIHCHIPQWGSD-KCEEQLEETIKNCLS 123 (193)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHH-TC-SCCTTCEEEEECTTSSSSEEEEEECCCTTST-THHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHhhHHHHHHHHHHHHH-cC-CCCCCCeEEeeCCCCCCCEEEEECCCcCCCc-chHHHHHHHHHHHHH
Confidence 67999999999999999999999998742 34 8999999999999999999999999999754 567899999999999
Q ss_pred HHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHHHHHHh
Q 029197 81 LAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIRG 158 (197)
Q Consensus 81 ~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~~~ 158 (197)
.|.+++++|||||+||||++|||++++|++| ++.+|+++ ....++++| +||++|+++|+.|.++|.+
T Consensus 124 ~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~-----~~~~~l~~V------~fv~~~~~~~~~~~~~l~~ 192 (193)
T 2xd7_A 124 AAEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDD-----SSASSLKNV------YFLLFDSESIGIYVQEMAK 192 (193)
T ss_dssp HHHHTTCSEEEECCCCCSTTCCCHHHHHHHHHHHHHHHHHH-----CSSCCCCEE------EEEECSHHHHHHHHHHHHC
T ss_pred HHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHh-----cCCCCCCEE------EEEECCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999988 99999874 245689999 9999999999999999864
No 5
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A
Probab=100.00 E-value=5.4e-38 Score=257.64 Aligned_cols=145 Identities=23% Similarity=0.334 Sum_probs=132.1
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCCCcHHHHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLS 80 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~~~~~~L~~~~~~~L~ 80 (197)
|.|||||++||++++|+++++||+++.+. +| ++++|++++|++|+|+||||||+|||.|.. ..+.+.|++||+++|+
T Consensus 44 l~~ggGv~~aI~~aaG~~l~~ec~~~~~~-~g-~~~~G~a~iT~~~~L~~k~VIH~vgP~~~~-~~~~~~L~~~y~~~L~ 120 (193)
T 1yd9_A 44 FYIGGEVGSTLEKKGGKEFVEAVLELRKK-NG-PLEVAGAAVSAGHGLPAKFVIHCNSPVWGS-DKCEELLEKTVKNCLA 120 (193)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHH-HC-SCCTTCEEEEECTTSSSSEEEEECCCCTTS-TTHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHhhHHHHHHHHHHHHH-cC-CCCCCCEEEecCCCCCCCEEEEeCCCCcCC-cchHHHHHHHHHHHHH
Confidence 67999999999999999999999988642 23 899999999999999999999999999975 3567899999999999
Q ss_pred HHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHHHHHHh
Q 029197 81 LAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIRG 158 (197)
Q Consensus 81 ~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~~~ 158 (197)
.|.+++++|||||+||||++|||++++|++| ++.+|+++ .+..++++| +||++|+++|+.|.++|.+
T Consensus 121 ~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~-----~~~~~l~~V------~fv~~~~~~~~~~~~~l~~ 189 (193)
T 1yd9_A 121 LADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVS-----TMSSSIKTV------YFVLFDSESIGIYVQEMAK 189 (193)
T ss_dssp HHHHTTCSEEEECCCSBSTTCBCHHHHHHHHHHHHHHHHTT-----CTTCCCCEE------EEECCSHHHHHHHHHHHTT
T ss_pred HHHHhCCceEeecccccCCCCCCHHHHHHHHHHHHHHHHHh-----cCCCCcCEE------EEEECCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988 99999874 235688999 9999999999999999875
Q ss_pred h
Q 029197 159 I 159 (197)
Q Consensus 159 ~ 159 (197)
+
T Consensus 190 ~ 190 (193)
T 1yd9_A 190 L 190 (193)
T ss_dssp T
T ss_pred h
Confidence 3
No 6
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-37 Score=260.81 Aligned_cols=144 Identities=38% Similarity=0.603 Sum_probs=132.7
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCC--CcHHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTI--NPEASLRSAYKNS 78 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~--~~~~~L~~~~~~~ 78 (197)
|.|||||++||+++||++|++||++.. .+++|++++|++|+|+||||||+|||.|.+.. .+.+.|++||+++
T Consensus 87 l~~ggGV~~AI~~aaG~~l~~ec~~~g------~~~~G~a~iT~~~~L~~k~VIH~vgP~~~~~~~~~~~~~L~~~y~~~ 160 (235)
T 2x47_A 87 LLGGGGVDGCIHRAAGPLLTDECRTLQ------SCKTGKAKITGGYRLPAKYVIHTVGPIAYGEPSASQAAELRSCYLSS 160 (235)
T ss_dssp CSCCSHHHHHHHHHHCHHHHHHHHTSC------CCCBTCEEEEECTTSSSSEEEEEBCCCCTTCCCHHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHhCHHHHHHHHHhC------CCCCCceEEecCCCCCCCEEEEecCccccCCCCcchHHHHHHHHHHH
Confidence 679999999999999999999998763 79999999999999999999999999997633 3578999999999
Q ss_pred HHHHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHHHHH
Q 029197 79 LSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKI 156 (197)
Q Consensus 79 L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~ 156 (197)
|+.|.+++++|||||+||||++|||++++|++| +|.+|+++ ++..+++| +||++++++++.|.+.+
T Consensus 161 L~~A~e~~i~SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl~~------~~~~l~~V------~fv~f~~~~~~~y~~~l 228 (235)
T 2x47_A 161 LDLLLEHRLRSVAFPCISTGVFGYPCEAAAEIVLATLREWLEQ------HKDKVDRL------IICVFLEKDEDIYRSRL 228 (235)
T ss_dssp HHHHHHTTCCEEEECCTTCSTTSCCHHHHHHHHHHHHHHHHHH------HGGGCSEE------EEEECSHHHHHHHHHHH
T ss_pred HHHHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHh------CCCCCCeE------EEEECCHHHHHHHHHHH
Confidence 999999999999999999999999999999988 99999984 45578999 99999999999999999
Q ss_pred Hhhhhh
Q 029197 157 RGILQE 162 (197)
Q Consensus 157 ~~~~~~ 162 (197)
..+|++
T Consensus 229 ~~~fp~ 234 (235)
T 2x47_A 229 PHYFPV 234 (235)
T ss_dssp HHHSCC
T ss_pred HHhcCC
Confidence 988764
No 7
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A
Probab=100.00 E-value=2.9e-37 Score=251.52 Aligned_cols=133 Identities=20% Similarity=0.200 Sum_probs=125.3
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCCCcHHHHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLS 80 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~~~~~~L~~~~~~~L~ 80 (197)
|.++|||++||+++||++|++||+++. ++++|++++|++|+|+||||||+|+|.| |++||+++|+
T Consensus 47 l~~ggGV~~aI~~aaG~~l~~ec~~~~------~~~~G~a~iT~~~~L~~k~VIH~vgP~~---------L~~~y~~~L~ 111 (183)
T 4abl_A 47 FNLKAGVSKAILECAGQNVERECSQQA------QQRKNDYIITGGGFLRCKNIIHVIGGND---------VKSSVSSVLQ 111 (183)
T ss_dssp SCCCSTHHHHHHHHHCHHHHHHHHHHH------HHSCCSEEEEECTTSBSSEEEEEETTSC---------HHHHHHHHHH
T ss_pred CCCCccHHHHHHHHhhHHHHHHHHHhc------CCCCCceEEecCCCCCCCEEEEeCcHHH---------HHHHHHHHHH
Confidence 678999999999999999999999875 7899999999999999999999999986 9999999999
Q ss_pred HHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHHHHHHh
Q 029197 81 LAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIRG 158 (197)
Q Consensus 81 ~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~~~ 158 (197)
.|++++++|||||+||||++|||++++|++| ++.+|+++ .+..++++| +||++|+++|+.|.++|++
T Consensus 112 ~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl~~-----~~~~~l~~V------~fv~f~~~~~~~f~~~l~k 180 (183)
T 4abl_A 112 ECEKKNYSSICLPAIGTGNAKQHPDKVAEAIIDAIEDFVQK-----GSAQSVKKV------KVVIFLPQVLDVFYANMKK 180 (183)
T ss_dssp HHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHT-----TCCSSCCEE------EEEESCHHHHHHHHHHHHH
T ss_pred HHHHcCCCeEeeccccCCCCCcCHHHHHHHHHHHHHHHHHh-----cCCCCCCEE------EEEECCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988 99999985 235789999 9999999999999999987
Q ss_pred h
Q 029197 159 I 159 (197)
Q Consensus 159 ~ 159 (197)
.
T Consensus 181 r 181 (183)
T 4abl_A 181 R 181 (183)
T ss_dssp H
T ss_pred h
Confidence 4
No 8
>3kh6_A Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3, B-aggressive lymphoma protein 3, SGC, structural genomics consortium, alternative splicing; HET: APR; 2.20A {Homo sapiens} PDB: 3v2b_A*
Probab=100.00 E-value=1.5e-35 Score=244.20 Aligned_cols=135 Identities=19% Similarity=0.232 Sum_probs=125.6
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCCCcHHHHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLS 80 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~~~~~~L~~~~~~~L~ 80 (197)
|.+||||++||+++||+++++||++.. ++++|++++|++|+|+||||||+|+|. .|++||+++|+
T Consensus 58 l~~ggGV~~AI~~aaG~~l~~ec~~~~------~~~~G~a~iT~g~~L~~k~VIH~vgp~---------~L~~~y~~~L~ 122 (199)
T 3kh6_A 58 FNRKSGVSRAILEGAGQAVESECAVLA------AQPHRDFIITPGGCLKCKIIIHVPGGK---------DVRKTVTSVLE 122 (199)
T ss_dssp SCCCSTHHHHHHHHHCHHHHHHHHHHH------TSCCCSSEEEECTTSSSSEEEEEETTS---------CHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHhhHHHHHHHHHhC------CCCCCeEEEecCCCCCCCEEEEeCCCH---------HHHHHHHHHHH
Confidence 679999999999999999999999875 789999999999999999999999994 49999999999
Q ss_pred HHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHHHHHHh
Q 029197 81 LAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIRG 158 (197)
Q Consensus 81 ~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~~~ 158 (197)
.|++++++|||||+||||++|||++++|++| ++.+|+++ .....+++| +||++|+++++.|.++|++
T Consensus 123 ~a~~~~i~SIAfP~IgtG~~G~p~~~aa~i~~~~v~~fl~~-----~~~~~l~~V------~fv~f~~~~~~~f~~~l~~ 191 (199)
T 3kh6_A 123 ECEQRKYTSVSLPAIGTGNAGKNPITVADNIIDAIVDFSSQ-----HSTPSLKTV------KVVIFQPELLNIFYDSMKK 191 (199)
T ss_dssp HHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHH-----CSSCSCCEE------EEEESSTHHHHHHHHHHHT
T ss_pred HHHHcCCCEEeecccccCCCCcCHHHHHHHHHHHHHHHHHh-----cCCCCCCEE------EEEECCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988 99999985 245789999 9999999999999999987
Q ss_pred hhh
Q 029197 159 ILQ 161 (197)
Q Consensus 159 ~~~ 161 (197)
...
T Consensus 192 ~~~ 194 (199)
T 3kh6_A 192 RDL 194 (199)
T ss_dssp TCC
T ss_pred ccc
Confidence 543
No 9
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A
Probab=100.00 E-value=2.5e-34 Score=228.73 Aligned_cols=131 Identities=24% Similarity=0.321 Sum_probs=120.1
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCCCcHHHHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLS 80 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~~~~~~L~~~~~~~L~ 80 (197)
|.|||||++||++++|++++++|++.. ++++|++++|++++|++|||||+|||.|+ ..+.+.|++||+++|+
T Consensus 27 l~~ggGv~~aI~~~~G~~l~~~c~~~g------~~~~G~a~it~~~~L~~~~Vih~vgp~~~--~~~~~~L~~~~~~~L~ 98 (159)
T 2dx6_A 27 LKLGAGVAGAILRKGGPSIQEECDRIG------KIRVGEAAVTGAGNLPVRYVIHAAVLGDE--PASLETVRKATKSALE 98 (159)
T ss_dssp CCCCSTTHHHHHHHHCTHHHHHHHHHC------CCCTTCEEEEECTTSSSSEEEEEEEESSS--CCCHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHhCHHHHHHHHhcC------CCCCCcEEEecCCCCCCCEEEEEeCCCCC--CchHHHHHHHHHHHHH
Confidence 679999999999999999999999853 89999999999999999999999999997 3458899999999999
Q ss_pred HHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHHHHH
Q 029197 81 LAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKI 156 (197)
Q Consensus 81 ~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~ 156 (197)
.|++++++|||||+||||++|+|+++++++| ++.+| .++++| +||++|+++|+.|.+.+
T Consensus 99 ~a~~~~~~sIa~P~igtG~~g~p~~~~a~i~~~~~~~~-----------~~~~~V------~~v~~~~~~~~~~~~~l 159 (159)
T 2dx6_A 99 KAVELGLKTVAFPLLGTGVGGLPVEAVARVMLEEIKKA-----------PDTLEV------TLYGYREEDAEAIRRAL 159 (159)
T ss_dssp HHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHTTS-----------CTTCEE------EEEESSHHHHHHHHHHC
T ss_pred HHHHcCCcEEEECCccCCCCCCCHHHHHHHHHHHHHhc-----------CCCCEE------EEEECCHHHHHHHHHhC
Confidence 9999999999999999999999999999998 66333 457889 99999999999998763
No 10
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*
Probab=100.00 E-value=6e-34 Score=236.51 Aligned_cols=142 Identities=27% Similarity=0.405 Sum_probs=128.6
Q ss_pred CCCCChHHHHHHHhhC----HHHHHHHhhccccCCCCc--cCCCcEEEeecCCCCC---CeEEEecCC----ccCCCCCc
Q 029197 1 MLGGGGCDGAIRRAAG----PELLEACYRVPEVGFGIR--CPTGEARITPGFKLPA---SHVIHTVGP----IYGVTINP 67 (197)
Q Consensus 1 L~~ggGva~AI~~aaG----~~l~~e~~~~~~~~~g~~--~~~G~vvvT~ag~L~~---k~IIH~v~P----~~~~~~~~ 67 (197)
|.|||||++||++++| +++++||+++.+. .| + +++|++++|++|+||+ |||||+||| .|.+ .+
T Consensus 46 l~~ggGV~~aI~~aaG~~~~~~l~~ec~~~~~~-~g-~~~~~~G~a~iT~~~~L~~~g~k~VIH~vgP~~~~~~~~--~~ 121 (211)
T 1vhu_A 46 LEHGGGVAYAIAKACAGDAGLYTEISKKAMREQ-FG-RDYIDHGEVVVTPAMNLEERGIKYVFHTVGPICSGMWSE--EL 121 (211)
T ss_dssp CCCCSHHHHHHHHHHHSSHHHHHHHHHHHHHHH-HS-SSCCCTTCCEEEECGGGGGGTCCEEEEEECCCCTTCCCH--HH
T ss_pred ccCccHHHHHHHHHhCCCchHHHHHHHHHHHHH-cC-CCcccCCcEEEEECCCCCccCcCEEEEecCCccccccCc--ch
Confidence 6799999999999999 9999999997642 23 5 9999999999999999 999999999 9954 55
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHhhcccccccccCcceeccccceEEEecc
Q 029197 68 EASLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFE 145 (197)
Q Consensus 68 ~~~L~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d 145 (197)
.+.|++||+++|+.|.+++++|||||+||||++|||++++|++| ++.+|++ + + +++| +||++|
T Consensus 122 ~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~G~p~~~aa~i~~~~v~~~l~-------~-~-l~~V------~~v~~~ 186 (211)
T 1vhu_A 122 KEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKVVETFLEAVKNFKG-------S-A-VKEV------ALVIYD 186 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHCCC-------S-S-CCEE------EEEESS
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHh-------C-C-CCEE------EEEECC
Confidence 78999999999999999999999999999999999999999988 8888874 2 2 8899 999999
Q ss_pred hhHHHHHHHHHHhhhh
Q 029197 146 QLVYQSLDQKIRGILQ 161 (197)
Q Consensus 146 ~~~~~~f~~~~~~~~~ 161 (197)
+++++.|.+.++.+..
T Consensus 187 ~~~~~~~~~~l~~~~~ 202 (211)
T 1vhu_A 187 RKSAEVALKVFERSLE 202 (211)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999987654
No 11
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A*
Probab=100.00 E-value=9.9e-34 Score=227.85 Aligned_cols=127 Identities=20% Similarity=0.223 Sum_probs=114.2
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCCCcHHHHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLS 80 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~~~~~~L~~~~~~~L~ 80 (197)
|++||||++||+++||++|++||+++++. +| ++++|++++|++| |+++||||+|||.|.. ..+.+.|++||+++|+
T Consensus 39 l~~ggGV~~AI~~aaG~~l~~ec~~~~~~-~g-~~~~G~a~iT~g~-l~~~~VIHtVgP~~~~-~~~~~~L~~~y~~~L~ 114 (168)
T 3eti_A 39 LRHVGGVARAIDVFTGGKLTKRSKEYLKS-SK-AIAPGNAVLFENV-LEHLSVMNAVGPRNGD-SRVEGKLCNVYKAIAK 114 (168)
T ss_dssp CCCCSTTHHHHHHHTTTHHHHHHHHHHTT-SC-CCCTTEEEEEEEE-ETTEEEEEEECCCTTS-TTHHHHHHHHHHHHHT
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHH-cC-CCCCCCEEEecCC-CCccEEEEecCCCCCc-chHHHHHHHHHHHHHH
Confidence 68999999999999999999999998753 34 8999999999999 9999999999999965 3557899999999997
Q ss_pred HHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHHHHHH
Q 029197 81 LAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIR 157 (197)
Q Consensus 81 ~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~~ 157 (197)
. .+|||||+||||++|||++++|++| ++ + . ++| +||+|+++.|+.|.+.+.
T Consensus 115 ~-----~~SIAfP~IstG~~g~P~~~aa~i~~~~v----~-------~----~~V------~~v~f~~~~~~~~~~~l~ 167 (168)
T 3eti_A 115 C-----DGKILTPLISVGIFKVKLEVSLQCLLKTV----T-------D----RDL------NVFVYTDQERVTIENFFN 167 (168)
T ss_dssp S-----CSCEEECCTTBSTTCBCHHHHHHHHHHHC----C-------S----SCE------EEEECCHHHHHHHHHHHH
T ss_pred h-----cCceeecccccCCCCCCHHHHHHHHHHHH----h-------c----CeE------EEEEcCHHHHHHHHHHhc
Confidence 4 4899999999999999999999988 55 2 2 678 999999999999999874
No 12
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A
Probab=100.00 E-value=2e-33 Score=226.07 Aligned_cols=129 Identities=19% Similarity=0.199 Sum_probs=115.8
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCCC--cHHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTIN--PEASLRSAYKNS 78 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~~--~~~~L~~~~~~~ 78 (197)
|++||||++||+++||++++ .+++++|++++|+++ ||||||+|||.|.++.. ..+.|++||+++
T Consensus 35 l~~ggGV~~aI~~aaG~~l~-----------~~~~~~G~a~iT~~~---~k~VIHtVGP~~~~~~~~~~~~~L~~~y~~~ 100 (168)
T 3gpg_A 35 GLPGDGVCKAVYKKWPESFK-----------NSATPVGTAKTVMCG---TYPVIHAVGPNFSNYSESEGDRELAAAYREV 100 (168)
T ss_dssp CCCCSHHHHHHHHHCGGGGT-----------TCCCCTTCEEEEEET---TEEEEEECCCCTTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHhhHHhh-----------cCCCCCCCEEEecCC---CCEEEEeCCCCcCCCCcchHHHHHHHHHHHH
Confidence 68999999999999999763 238999999999995 89999999999988653 257899999999
Q ss_pred HHHHHHcCCceEeecccccCCCCccHHHHHHHH-HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHHHHHH
Q 029197 79 LSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS-TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIR 157 (197)
Q Consensus 79 L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~-~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~~ 157 (197)
|++|++++++|||||+||||++|||++++|+++ ++++|++ ..+++| +||++|+++++.|.+.++
T Consensus 101 L~~A~~~~~~SIAfP~IstGi~g~P~~~aa~ai~~v~~~~~---------~~~~~V------~fv~f~~~~~~~y~~~l~ 165 (168)
T 3gpg_A 101 AKEVTRLGVNSVAIPLLSTGVYSGGKDRLTQSLNHLFTAMD---------STDADV------VIYCRDKEWEKKISEAIQ 165 (168)
T ss_dssp HHHHHHHTCSEEEEECTTSSTTSTTSCCHHHHC-CHHHHHT---------TCCSEE------EEEESCHHHHHHHHHHHH
T ss_pred HHHHHHhCCcEEEECccccCCCCCCHHHHHHHHHHHHHhcc---------CCCCEE------EEEECCHHHHHHHHHHHh
Confidence 999999999999999999999999999999955 8877776 238889 999999999999999997
Q ss_pred h
Q 029197 158 G 158 (197)
Q Consensus 158 ~ 158 (197)
+
T Consensus 166 ~ 166 (168)
T 3gpg_A 166 M 166 (168)
T ss_dssp T
T ss_pred c
Confidence 5
No 13
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*
Probab=99.97 E-value=4.2e-32 Score=218.34 Aligned_cols=130 Identities=21% Similarity=0.267 Sum_probs=113.9
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCCC--cHHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTIN--PEASLRSAYKNS 78 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~~--~~~~L~~~~~~~ 78 (197)
|++||||++||++++|++++ .+++++|++++|+++ +|||||+|||.|.+... ..+.|++||+++
T Consensus 29 l~~ggGV~~aI~~aaG~~l~-----------~~~~~~G~a~iT~~~---~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~ 94 (168)
T 3gqe_A 29 GQPGGGVCGALYKKFPESFD-----------LQPIEVGKARLVKGA---AKHIIHAVGPNFNKVSEVEGDKQLAEAYESI 94 (168)
T ss_dssp SCCTTGGGSHHHHHCGGGCC-----------CCCCCTTCEEEECCT---TCCEEEEECCCTTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHhhHHhc-----------CCCcCCCcEEEEcCC---CCEEEEcCCCccCCCCchhHHHHHHHHHHHH
Confidence 68999999999999999653 238999999999984 89999999999987653 257899999999
Q ss_pred HHHHHHcCCceEeecccccCCCCccHHHHHHHH-HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHHHHHH
Q 029197 79 LSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS-TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIR 157 (197)
Q Consensus 79 L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~-~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~~ 157 (197)
|+.|++++++|||||+||||++|||++++++.| ++++.. +.++++| +||++|+++++.|.+++.
T Consensus 95 L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~~i~~~l~~~---------~~~~~~V------~iv~fd~~~~~~~~~~~~ 159 (168)
T 3gqe_A 95 AKIVNDNNYKSVAIPLLSTGIFSGNKDRLTQSLNHLLTAL---------DTTDADV------AIYCRDKKWEMTLKEAVA 159 (168)
T ss_dssp HHHHHHTTCSEEEEECTTSSTTSCSSCCHHHHHHHHHHHH---------TTSCCEE------EEEESCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHC---------CCCCCeE------EEEEcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999977 553333 3457889 999999999999999987
Q ss_pred hh
Q 029197 158 GI 159 (197)
Q Consensus 158 ~~ 159 (197)
..
T Consensus 160 ~~ 161 (168)
T 3gqe_A 160 RR 161 (168)
T ss_dssp HC
T ss_pred hh
Confidence 53
No 14
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A*
Probab=99.97 E-value=1.9e-31 Score=217.02 Aligned_cols=128 Identities=21% Similarity=0.370 Sum_probs=108.2
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCCCcHHHHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLS 80 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~~~~~~L~~~~~~~L~ 80 (197)
|++||||++||+++||++|++||+++.+. .| ++++|++++|++|+|+ +||||+|||.|..+. +.+.|++||+++
T Consensus 49 l~~ggGV~~AI~~aaG~~l~~ec~~~~~~-~g-~~~~G~a~iT~~~~L~-~~VIH~vgP~~~~~~-~~~~L~~~y~~~-- 122 (182)
T 2acf_A 49 LKHGGGVAGALNKATNGAMQKESDDYIKL-NG-PLTVGGSCLLSGHNLA-KKCLHVVGPNLNAGE-DIQLLKAAYENF-- 122 (182)
T ss_dssp CCCCSHHHHHHHHHTTTHHHHHHHHHHHH-HC-CCCTTCEEEEECTTTC-SEEEEECCCCGGGTC-CTTHHHHHHHGG--
T ss_pred CCCCchHHHHHHHHhCHHHHHHHHHHHHH-cC-CCCCCcEEEeeCCCCC-ceEEEECCCCCCCCc-hHHHHHHHHHHh--
Confidence 68999999999999999999999988642 34 8999999999999996 899999999998653 567999999985
Q ss_pred HHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHHHHHHh
Q 029197 81 LAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIRG 158 (197)
Q Consensus 81 ~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~~~ 158 (197)
++++|||||+||||++|||++++|++| ++ + . +| +||++|++.|+ +.++.
T Consensus 123 ----~~~~SIAfP~IstGi~G~p~~~aa~i~~~~v----~-------~-----~V------~~v~~d~~~y~---~~l~~ 173 (182)
T 2acf_A 123 ----NSQDILLAPLLSAGIFGAKPLQSLQVCVQTV----R-------T-----QV------YIAVNDKALYE---QVVMD 173 (182)
T ss_dssp ----GGSSEEEECCTTCGGGCCCHHHHHHHHHHHC----C-------S-----EE------EEEESCHHHHH---HHHHH
T ss_pred ----cCCCEEEECCcccCCCCCCHHHHHHHHHHHH----h-------C-----cE------EEEECCHHHHH---HHHHH
Confidence 799999999999999999999999988 44 2 1 78 99999988554 55556
Q ss_pred hhhhc
Q 029197 159 ILQEI 163 (197)
Q Consensus 159 ~~~~~ 163 (197)
+|++.
T Consensus 174 ~~p~~ 178 (182)
T 2acf_A 174 YLDNL 178 (182)
T ss_dssp HC---
T ss_pred hCCCC
Confidence 67654
No 15
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*
Probab=99.97 E-value=3.9e-31 Score=216.72 Aligned_cols=124 Identities=18% Similarity=0.220 Sum_probs=110.8
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCCCcHHHHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLS 80 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~~~~~~L~~~~~~~L~ 80 (197)
|++||||++||+++||++|++||+++++. +| ++++|++++|++|+| ||||+|||.|.. .+.+.|++||+++|+
T Consensus 67 L~~ggGV~~AI~~aaG~~l~~ec~~l~~~-~g-~~~~G~a~iT~~~~L---~VIHtVGP~~~~--~~~~~L~~~y~~~L~ 139 (193)
T 3ejg_A 67 LAHGGGLAKALDVYTKGKLQRLSKEHIGL-AG-KVKVGTGVMVECDSL---RIFNVVGPRKGK--HERDLLIKAYNTINN 139 (193)
T ss_dssp CCCCSHHHHHHHHHTTTHHHHHHHHHHHH-HC-SCCTTCEEEEEETTE---EEEEEECCCSST--THHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHhhHHHHHHHHHHHHH-cC-CCCCCCEEEecCCCe---eEEEecCCCCCc--hHHHHHHHHHHHHHH
Confidence 68999999999999999999999998642 34 899999999999999 999999999965 567899999999997
Q ss_pred HHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHHHHHH
Q 029197 81 LAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIR 157 (197)
Q Consensus 81 ~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~~ 157 (197)
. .+|||||+||||++|||++++|+++ ++ + . ++| +||+|+++.++.|.+.+.
T Consensus 140 ~-----~~SIAfPaIstGi~G~P~~~aa~ial~~v----~-------~----~~V------~fv~f~~~~~~~~~~~l~ 192 (193)
T 3ejg_A 140 E-----QGTPLTPILSCGIFGIKLETSLEVLLDVC----N-------T----KEV------KVFVYTDTEVCKVKDFVS 192 (193)
T ss_dssp S-----SSCEEECCTTCGGGCCCHHHHHHHHHHHC----C-------S----SCE------EEEECSHHHHHHHHHHHH
T ss_pred h-----cCceeecccccCCCCCCHHHHHHHHHHHH----h-------c----CeE------EEEEcCHHHHHHHHHHhc
Confidence 3 3799999999999999999999988 55 2 1 478 999999999999998874
No 16
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*
Probab=99.97 E-value=1.1e-30 Score=211.51 Aligned_cols=127 Identities=24% Similarity=0.293 Sum_probs=107.6
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCCCcHHHHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLS 80 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~~~~~~L~~~~~~~L~ 80 (197)
|++||||++||+++||++|++||+++++. +| +++ +++|+|++|++++|||+|||.|... ++++.|++||+++|+
T Consensus 47 L~~ggGV~~AI~~aaG~~l~~ec~~~~~~-~g-~~~---a~iT~G~~l~t~~VIHtVGP~~~~~-~~~~~L~~~y~~~L~ 120 (176)
T 3ejf_A 47 MTHGSGVAKAIADFCGLDFVEYCEDYVKK-HG-PQQ---RLVTPSFVKGIQCVNNVVGPRHGDN-NLHEKLVAAYKNVLV 120 (176)
T ss_dssp CCCCSHHHHHHHHHHCHHHHHHHHHHHHH-HC-CCS---EEEECCCSTTEEEEEEECCCCTTCS-CHHHHHHHHHHTTCC
T ss_pred cCCCchHHHHHHHHhhHHHHHHHHHHHHh-cC-CCC---eeecccccccCCEEEEeCCCCCCCc-cHHHHHHHHHHHHHH
Confidence 68999999999999999999999998743 33 666 8999999999999999999999653 467899999999998
Q ss_pred HHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHHHHH
Q 029197 81 LAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKI 156 (197)
Q Consensus 81 ~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~ 156 (197)
++++|||||+||||++|||++++|++| ++ .+ ++| ++.++.+|++.++.|...+
T Consensus 121 ----~~~~SIAfPaIstGi~g~P~~~aA~ia~~~v---~~------------~~v----~v~~~~~D~e~~~~~~~~~ 175 (176)
T 3ejf_A 121 ----DGVVNYVVPVLSLGIFGVDFKMSIDAMREAF---EG------------CTI----RVLLFSLSQEHIDYFDVTC 175 (176)
T ss_dssp ----TTCCEEEEECCCTTSTTCCHHHHHHHHHHHH---TT------------CCC----EEEEEESCHHHHHHHHHTC
T ss_pred ----cCCcEEEECccccCCCCCCHHHHHHHHHHHh---hh------------cce----EEEEEcCCHHHHHHHHHHh
Confidence 999999999999999999999999988 66 22 224 1155566788899988653
No 17
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63}
Probab=99.97 E-value=3.7e-30 Score=207.96 Aligned_cols=125 Identities=22% Similarity=0.248 Sum_probs=110.7
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCCCcHHHHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLS 80 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~~~~~~L~~~~~~~L~ 80 (197)
|.|||||++||++++|+++++||+++.+. +| ++++|++++|++++| ||||+|||.|... +.+.|++||+++|+
T Consensus 46 l~~ggGv~~AI~~aaG~~l~~ec~~~~~~-~g-~~~~G~a~iT~~~~l---~VIH~vgP~~~~~--~~~~L~~~y~~~L~ 118 (174)
T 2vri_A 46 LLHGGGVARAIDILTEGQLQSLSKDYISS-NG-PLKVGAGVMLECEKF---NVFNVVGPRTGKH--EHSLLVEAYNSILF 118 (174)
T ss_dssp CCCCSHHHHHHHHHTTTHHHHHHHHHHHH-HC-SCCTTCEEEEECSSC---EEEEEECCCSSTT--HHHHHHHHHHHHHH
T ss_pred CCCCCcHhHHHHHHhhHHHHHHHHHHHHh-cC-CCCCCeEEEEECCCC---EEEEEcCCCCCcc--hHHHHHHHHHHHHh
Confidence 68999999999999999999999998742 33 999999999999997 9999999999643 68899999999998
Q ss_pred HHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHHHHHHh
Q 029197 81 LAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIRG 158 (197)
Q Consensus 81 ~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~~~ 158 (197)
. + +|||||+||||++|||+++++++| ++ + . ++| +||+|+++.++.|.+.|++
T Consensus 119 ~---~--~SIAfP~IstG~~g~p~~~aa~i~~~~v----~-------~----~~V------~~v~f~~~~~~~~~~~l~~ 172 (174)
T 2vri_A 119 E---N--GIPLMPLLSCGIFGVRIENSLKALFSCD----I-------N----KPL------QVFVYSSNEEQAVLKFLDG 172 (174)
T ss_dssp S---S--SCEEEECSSCGGGCCCHHHHHHHHHTSC----C-------C----SCE------EEEECSHHHHHHHHHHHHT
T ss_pred h---C--CcEEeCccccCCCCCCHHHHHHHHHHHH----h-------h----CcE------EEEEcCHHHHHHHHHHHhh
Confidence 4 3 499999999999999999999988 44 2 2 678 9999999999999999854
No 18
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A*
Probab=99.96 E-value=5.7e-31 Score=227.12 Aligned_cols=160 Identities=13% Similarity=0.021 Sum_probs=127.0
Q ss_pred CCCCChHHHHHHHhhC-HHHHHHHhhccccCCCCccCCCcEEEeecC----------CCCCCeEEEecCCccCCCC----
Q 029197 1 MLGGGGCDGAIRRAAG-PELLEACYRVPEVGFGIRCPTGEARITPGF----------KLPASHVIHTVGPIYGVTI---- 65 (197)
Q Consensus 1 L~~ggGva~AI~~aaG-~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag----------~L~~k~IIH~v~P~~~~~~---- 65 (197)
|.|||||++||++++| +.++++|++..+ .| .+++|++++|+++ +|+||||||+|||.|.++.
T Consensus 83 l~~gGGVd~AI~raaGg~~l~~ec~~~~~--~g-~~~~G~a~iT~~~~~~~~~~~~~~L~~k~VIHtvgp~~~~~~~~d~ 159 (284)
T 1njr_A 83 GYLGGGFDKALYNYFGGKPFETWFRNQLG--GR-YHTVGSATVVDLQRCLEEKTIECRDGIRYIIHVPTVVAPSAPIFNP 159 (284)
T ss_dssp CCCCSSHHHHHHHHHTSHHHHHHHHHHTT--TS-CCCTTCCEEEEGGGGGCC----CCTTEEEEEECCCBSCSSSCSCCT
T ss_pred CCCCchHHHHHHHhhCcHHHHHHHHHHHh--cC-CCCCCeEEEEECCcccccccchhcCCCCEEEEeCCCccCCCCCccc
Confidence 6799999999999975 788999998863 34 7999999999999 9999999999999998652
Q ss_pred -----CcHHHHHHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHhhcccccccc---cCcceecc
Q 029197 66 -----NPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRRQGNCCLFHL---EDVKNFEV 135 (197)
Q Consensus 66 -----~~~~~L~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~~~~~~~~~~---~~l~~I~~ 135 (197)
.+.+.|++||+++|+.| +++++|||||+||||++|||++++|++| ++.+|+++ +. ..++.|
T Consensus 160 ~~p~~~~~~~L~~~~~~~L~~a-e~~i~SIAfPaIsTGv~G~P~~~aA~i~~~av~~f~~~------~~~s~~~~~~v-- 230 (284)
T 1njr_A 160 QNPLKTGFEPVFNAMWNALMHS-PKDIDGLIIPGLCTGYAGVPPIISCKSMAFALRLYMAG------DHISKELKNVL-- 230 (284)
T ss_dssp TCHHHHTHHHHHHHHHHHHHTS-CTTCSEEEECCTTCSTTCCCHHHHHHHHHHHHHHHHTG------GGSCHHHHHHH--
T ss_pred ccccccHHHHHHHHHHHHHHHH-HhCCCEEEECcccccCCCCCHHHHHHHHHHHHHHHHHh------CCcccccceEE--
Confidence 13589999999999999 9999999999999999999999999988 99999874 22 223556
Q ss_pred ccceEEEecchhHHHHHHH-HHHhhhhhcCCCccchhhhhhcc
Q 029197 136 GTSSKLMSFEQLVYQSLDQ-KIRGILQEIGLQNAQIMSICRFS 177 (197)
Q Consensus 136 ~~~~~~v~~d~~~~~~f~~-~~~~~~~~~~~~~~~~~s~~~~~ 177 (197)
.||.+++ .|+.|.. .+.+-+...+.+-.+++|..-..
T Consensus 231 ----i~~~~~~-~~~~~~~~~~~ee~~~~~~~~~~~~~f~~~~ 268 (284)
T 1njr_A 231 ----IMYYLQY-PFEPFFPESCKIECQKLGIDIEMLKSFNVEK 268 (284)
T ss_dssp ----HHHHTTC-CCGGGSCHHHHHHHHHHTCCHHHHHTCCTTT
T ss_pred ----EEEECHH-HHHHHHhhhHHHHHHHhCCCHHHHhhccccc
Confidence 7777744 4444433 34444455666666666544433
No 19
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=99.93 E-value=3.9e-26 Score=209.62 Aligned_cols=129 Identities=22% Similarity=0.279 Sum_probs=111.1
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCCCc--HHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINP--EASLRSAYKNS 78 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~~~--~~~L~~~~~~~ 78 (197)
|++||||++||+++||+++.+ +.+++|++++|+++ .|||||+|||.|+++.+. .++|++||+++
T Consensus 369 L~gGgGVdGAIhraaG~~ll~-----------~~~~tG~AkIT~g~---aKyIIHtVGPvw~~g~~~E~~~lLascYrns 434 (670)
T 4gua_A 369 GRPGEGVCRAIYKRWPTSFTD-----------SATETGTARMTVCL---GKKVIHAVGPDFRKHPEAEALKLLQNAYHAV 434 (670)
T ss_dssp CCCCSSHHHHHHHHCGGGGTT-----------CCCCTTCEEEEEET---TEEEEEECCCCTTSSCHHHHHHHHHHHHHHH
T ss_pred CCCcCCHhHHHHHHhhHHHhc-----------CCCCcceEEEecCC---CceEEEcCCCCccCCCCchHHHHHHHHHHHH
Confidence 689999999999999988764 26789999999999 499999999999987743 36899999999
Q ss_pred HHHHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHHHHH
Q 029197 79 LSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKI 156 (197)
Q Consensus 79 L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~ 156 (197)
|++|.+++++|||||+||||++|||++. ++++ +|.+|++. + . -+| .+|++|++.-+.+++++
T Consensus 435 LkLA~e~~~kSIAFPLISTGIYG~PKda-l~IAl~~I~~fL~~------~--D-~dV------~IvcfDKkwe~~Ik~ai 498 (670)
T 4gua_A 435 ADLVNEHNIKSVAIPLLSTGIYAAGKDR-LEVSLNCLTTALDR------T--D-ADV------TIYCLDKKWKERIDAAL 498 (670)
T ss_dssp HHHHHHTTCSEEEECCTTSSSTTTTSCC-HHHHHHHHHHHHTT------S--S-CEE------EEECSCHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEEccccccCCCCCHHH-HHHHHHHHHHHHhc------c--C-CEE------EEEEecChHHHHHHHHH
Confidence 9999999999999999999999999875 5555 99999983 2 1 368 99999998777887777
Q ss_pred Hhh
Q 029197 157 RGI 159 (197)
Q Consensus 157 ~~~ 159 (197)
...
T Consensus 499 ~~r 501 (670)
T 4gua_A 499 QLK 501 (670)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 20
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*
Probab=99.85 E-value=3.3e-21 Score=151.65 Aligned_cols=98 Identities=13% Similarity=0.135 Sum_probs=87.4
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCc-cCCCCCcHHHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI-YGVTINPEASLRSAYKNSL 79 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~-~~~~~~~~~~L~~~~~~~L 79 (197)
|.|||||++||++++|. + .||++. .+++|++++|+++ .+||||+++|. |.. ..+.+.|+++|++++
T Consensus 35 ~~~G~Gva~ai~~~~p~-~-~~~~~~-------~~~~G~a~it~~~---~~~Vih~v~~~~~~~-~~~~~~l~~~l~~~l 101 (149)
T 2eee_A 35 CRMGAGIAVLFKKKFGG-V-QELLNQ-------QKKSGEVAVLKRD---GRYIYYLITKKRASH-KPTYENLQKSLEAMK 101 (149)
T ss_dssp CCCCSTTHHHHHHHTCC-H-HHHHTT-------CCCTTCEEEEESS---SSEEEEEEEESSTTS-CCCHHHHHHHHHHHH
T ss_pred CCcCCcHHHHHHHHCcH-H-HHHhcc-------cCCCccEEEEEcC---CCEEEEEEecCCCCC-CCCHHHHHHHHHHHH
Confidence 57999999999999954 4 566541 7889999999986 59999999998 654 456889999999999
Q ss_pred HHHHHcCCceEeecccccCCCCccHHHHHHHH
Q 029197 80 SLAKANNIQYIAFPAISCGLYWCTLFCLQMIS 111 (197)
Q Consensus 80 ~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~ 111 (197)
+.|++++++|||||+||||++|+|.+++++++
T Consensus 102 ~~a~~~~~~sIa~P~IgtG~~G~~~~~v~~ii 133 (149)
T 2eee_A 102 SHCLKNGVTDLSMPRIGCGLDRLQWENVSAMI 133 (149)
T ss_dssp HHHHHHTCCEEECCCCCCTTTTCCHHHHHHHH
T ss_pred HHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999988
No 21
>2jyc_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, BC011709, protein structure initiative, PSI-2; NMR {Homo sapiens} PDB: 2lgr_A
Probab=99.84 E-value=8.9e-21 Score=151.04 Aligned_cols=98 Identities=13% Similarity=0.135 Sum_probs=87.8
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCc-cCCCCCcHHHHHHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI-YGVTINPEASLRSAYKNSL 79 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~-~~~~~~~~~~L~~~~~~~L 79 (197)
|.|||||++||++++|. + .||++. .+++|++++|+++ .+||||+++|. |.. ..+.+.|+++|++++
T Consensus 46 ~~~GgGVa~ai~~~~p~-~-~e~~~~-------~~~~G~a~it~~~---~~~Vih~vg~~~~~~-~~~~~~l~~~l~~~l 112 (160)
T 2jyc_A 46 CRMGAGIAVLFKKKFGG-V-QELLNQ-------QKKSGEVAVLKRD---GRYIYYLITKKRASH-KPTYENLQKSLEAMK 112 (160)
T ss_dssp CCCCSSTHHHHHHHHCC-H-HHHHHH-------CCCTTCEEEEEET---TEEEEEEECSSSTTS-CCCHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHChH-H-HHHhcc-------CCCCCcEEEEecC---CcEEEEEecCCCCCC-CChHHHHHHHHHHHH
Confidence 57999999999999965 4 577652 7889999999996 59999999998 654 456889999999999
Q ss_pred HHHHHcCCceEeecccccCCCCccHHHHHHHH
Q 029197 80 SLAKANNIQYIAFPAISCGLYWCTLFCLQMIS 111 (197)
Q Consensus 80 ~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~ 111 (197)
+.|.+++++|||||+||||++|+|.+++++++
T Consensus 113 ~~a~~~~~~sIa~P~IgtGi~G~p~~~v~~ii 144 (160)
T 2jyc_A 113 SHCLKNGVTDLSMPRIGCGLDRLQWENVSAMI 144 (160)
T ss_dssp HHHHHHTCCEEEEESCCSSCSSSCHHHHHHHH
T ss_pred HHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999988
No 22
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A
Probab=99.82 E-value=5.5e-20 Score=145.78 Aligned_cols=105 Identities=16% Similarity=0.058 Sum_probs=90.3
Q ss_pred CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCc-cCCCC-C----cHHHHHHH
Q 029197 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI-YGVTI-N----PEASLRSA 74 (197)
Q Consensus 1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~-~~~~~-~----~~~~L~~~ 74 (197)
+.|||||++||++++ |++++++++..+. .+++++|++.+|+++. .+||||+++|. |.... . +.+.|++|
T Consensus 32 ~~~G~Gva~ai~~~~-p~~~~~~~~~~~~--~~~~~~G~~~i~~~~~--~~~Vi~~v~~~~~~~~~~~~~~~~~~~l~~~ 106 (158)
T 2fg1_A 32 GGWGKGFVLALSKKW-KMPEEAYRQWYKS--QEEFTLGAVQFVNVEN--KLYVANMIGQHGIYKDSKGLPPIRYDAVRQC 106 (158)
T ss_dssp CCCCSTHHHHHHHHC-SHHHHHHHHHHHH--TSSCSTTCEEEEEEET--TEEEEEEEEESSSSCCTTCCCSBCHHHHHHH
T ss_pred CCcCccHHHHHHHHC-ChHHHHHHHHHhh--ccCcCCccEEEEecCC--CeEEEEEEEEcccCCCCCCCccccHHHHHHH
Confidence 579999999999999 7888887775532 2388999999999842 39999999998 76433 1 57899999
Q ss_pred HHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH
Q 029197 75 YKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS 111 (197)
Q Consensus 75 ~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~ 111 (197)
++++++.|.+++. |||||.||||++|+|.+++++++
T Consensus 107 l~~~~~~a~~~~~-sIa~P~Ig~G~~G~~w~~v~~ii 142 (158)
T 2fg1_A 107 LKEVALFTIAHKA-SVHMPRIGCGLAGGKWELMEQII 142 (158)
T ss_dssp HHHHHHHHHHHTC-EEEECCTTCSTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCC-eEEecCcCCCCCCCCHHHHHHHH
Confidence 9999999999997 99999999999999999999988
No 23
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A
Probab=99.03 E-value=3.2e-10 Score=97.21 Aligned_cols=93 Identities=9% Similarity=0.066 Sum_probs=75.2
Q ss_pred EEEecCCccCCCC------CcHHHHHHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH-HHHHh-Hhhccccc
Q 029197 53 VIHTVGPIYGVTI------NPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS-TIFGW-RRQGNCCL 124 (197)
Q Consensus 53 IIH~v~P~~~~~~------~~~~~L~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~-~i~~f-~~~~~~~~ 124 (197)
||.+++|+|.... ...+.|++.++++|..|.++|.++|++||+|||.||.|++++|+++ .++.- -+
T Consensus 172 vit~aApn~~~~~~~~~~~~~~~~l~~rir~vL~iA~~~g~~~LVLGA~GCGvfgnpp~~VA~~~~~vL~~~~~------ 245 (277)
T 3sig_A 172 FLTSPAPNRRAIGDLRTVEEIGRVLRGRAAKVLAAARHHGHRRLVLGAWGCGVFGNDPAQVAETFAGLLLDGGP------ 245 (277)
T ss_dssp EEEECCCCHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHSTTCT------
T ss_pred EEEecCCCCccccCccchHHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCcCCCCHHHHHHHHHHHHhhcch------
Confidence 7888899885321 1247899999999999999999999999999999999999999999 66321 11
Q ss_pred ccccCcceeccccceEEEecch----hHHHHHHHHHHh
Q 029197 125 FHLEDVKNFEVGTSSKLMSFEQ----LVYQSLDQKIRG 158 (197)
Q Consensus 125 ~~~~~l~~I~~~~~~~~v~~d~----~~~~~f~~~~~~ 158 (197)
....+++| .|+++|. ..+++|.+.|..
T Consensus 246 -f~~~f~~V------vFAv~d~~~~~~n~~~F~~~F~~ 276 (277)
T 3sig_A 246 -FAGRFAHV------VFAVWDTAPGAPRHAAFARRFGS 276 (277)
T ss_dssp -TTTTCSEE------EEECCCCSTTCHHHHHHHHHC--
T ss_pred -hcCCceEE------EEEEecCCCcchHHHHHHHHHhh
Confidence 23478999 9999987 689999998754
No 24
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=78.09 E-value=0.26 Score=27.78 Aligned_cols=20 Identities=50% Similarity=0.705 Sum_probs=17.1
Q ss_pred CCccchhhhhhcccccccccC
Q 029197 165 LQNAQIMSICRFSKMSKLHFP 185 (197)
Q Consensus 165 ~~~~~~~s~~~~~~~~~~~~~ 185 (197)
+++-||+|+|.|- +|.+||-
T Consensus 2 lep~qilsi~sfi-lsalhf~ 21 (33)
T 2kix_A 2 LEPFQILSISSFI-LSALHFI 21 (33)
T ss_dssp CTTTHHHHHHHHH-HHHHHHH
T ss_pred CchhHHHHHHHHH-HHHHHHH
Confidence 4577999999999 9999984
No 25
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=77.64 E-value=5.9 Score=32.50 Aligned_cols=47 Identities=11% Similarity=0.012 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH-HHHHhHh
Q 029197 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS-TIFGWRR 118 (197)
Q Consensus 72 ~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~-~i~~f~~ 118 (197)
.+.++++++.|.+.|++.+++=++||-+..=|++++..+| -+.++++
T Consensus 36 ~~~~~~i~~~c~~lGI~~lTlYaFStENw~Rp~~EV~~Lm~L~~~~l~ 83 (225)
T 3ugs_B 36 VKTMQKLMEVCMEENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLD 83 (225)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEESGGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEcccccCCCHHHHHHHHHHHHHHHH
Confidence 3466777788889999999999999999999999999999 5566665
No 26
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=74.22 E-value=9.9 Score=31.00 Aligned_cols=47 Identities=11% Similarity=-0.059 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH-HHHHhHh
Q 029197 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS-TIFGWRR 118 (197)
Q Consensus 72 ~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~-~i~~f~~ 118 (197)
.+.+++++..|.+.|++.+++=+.+|++.+=|++++..+| -+.++++
T Consensus 33 ~~~l~~i~~~c~~~GI~~lTlYaFSteN~kRp~~Ev~~Lm~l~~~~l~ 80 (227)
T 2vg0_A 33 AAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVVE 80 (227)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEEETGGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeecccccCCCHHHHHHHHHHHHHHHH
Confidence 4678888888999999999999999999999999998888 5555554
No 27
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=67.87 E-value=8.5 Score=32.15 Aligned_cols=50 Identities=12% Similarity=0.049 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH-HHHHhHh
Q 029197 69 ASLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS-TIFGWRR 118 (197)
Q Consensus 69 ~~L~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~-~i~~f~~ 118 (197)
..=.+.++++++.|.+.|++.+++=++||-+..=|++++..+| -+.++++
T Consensus 51 ~~G~~~~~~iv~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~~~~l~ 101 (256)
T 4h8e_A 51 YEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLK 101 (256)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEEEEETTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEEchhhhCCCHHHHHHHHHHHHHHHH
Confidence 3344567788888889999999999999999999999999888 4444443
No 28
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=67.86 E-value=4.8 Score=33.62 Aligned_cols=50 Identities=12% Similarity=0.026 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH-HHHHhHh
Q 029197 69 ASLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS-TIFGWRR 118 (197)
Q Consensus 69 ~~L~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~-~i~~f~~ 118 (197)
..=.+.++++++.|.+.|++.+.+=++||-++.=|++++..+| -+.++++
T Consensus 44 ~~G~~~l~~i~~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~~~~l~ 94 (253)
T 3sgv_B 44 KAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALD 94 (253)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEECC-----------CHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEEchhccCCCHHHHHHHHHHHHHHHH
Confidence 3344567788888889999999999999999999999999988 4455544
No 29
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=49.88 E-value=26 Score=29.57 Aligned_cols=48 Identities=10% Similarity=-0.072 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH-HHHHhHh
Q 029197 71 LRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS-TIFGWRR 118 (197)
Q Consensus 71 L~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~-~i~~f~~ 118 (197)
=.+.+++++..|.+.|++.+.+=+++|.+++=|.+++..+| -+.++++
T Consensus 84 G~~~l~~iv~~c~~lGI~~LTlYaFStENwkRp~~EV~~Lm~L~~~~l~ 132 (284)
T 2vg3_A 84 GEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVR 132 (284)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEEEETTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHHHHHHHHHH
Confidence 34678888889999999999999999999999999998888 4444433
No 30
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=48.45 E-value=20 Score=29.58 Aligned_cols=47 Identities=6% Similarity=0.049 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH-HHHHhHh
Q 029197 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS-TIFGWRR 118 (197)
Q Consensus 72 ~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~-~i~~f~~ 118 (197)
.+.+++++..|.+.|++.+++=+++|.+++=|++++..+| -+.++++
T Consensus 45 ~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm~l~~~~l~ 92 (245)
T 2d2r_A 45 VKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKMLKKYLK 92 (245)
T ss_dssp HHHHHHHHHHHHTTTCSEEEEECC----------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHHHHHHHHHH
Confidence 4678888889999999999999999999999999988887 4444443
No 31
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=42.46 E-value=29 Score=26.39 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=27.2
Q ss_pred CCeEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHcCCceEeecc
Q 029197 50 ASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPA 94 (197)
Q Consensus 50 ~k~IIH~v~P~~~~~~~~~~~L~~~~~~~L~~A~~~~~~SIAfPa 94 (197)
++.|||++++.|..... .+.-.....++++.+.+.+.+.+.+-+
T Consensus 68 ~d~vi~~a~~~~~~~~~-~~~n~~~~~~l~~~~~~~~~~~~v~~S 111 (227)
T 3dhn_A 68 ADAVISAFNPGWNNPDI-YDETIKVYLTIIDGVKKAGVNRFLMVG 111 (227)
T ss_dssp CSEEEECCCC------C-CSHHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCEEEEeCcCCCCChhH-HHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 78999999998654321 112234567788888888888777743
No 32
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=34.93 E-value=25 Score=29.00 Aligned_cols=41 Identities=10% Similarity=0.020 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH
Q 029197 71 LRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS 111 (197)
Q Consensus 71 L~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~ 111 (197)
=.+.+++++..|.+.|++.+++=+++|.+++=|++++..+|
T Consensus 49 G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm 89 (249)
T 1f75_A 49 GMQTVRKITRYASDLGVKYLTLYAFSTENWSRPKDEVNYLM 89 (249)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEEC------------CGGG
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEecccccCCCHHHHHHHH
Confidence 35678888888999999999999999999999999987766
No 33
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=34.55 E-value=29 Score=28.74 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHHHH
Q 029197 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMIS 111 (197)
Q Consensus 72 ~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~ 111 (197)
.+.+++++..|.+.|++.+++=+++|.+++=|++++..+|
T Consensus 47 ~~~l~~iv~~c~~~GI~~lTlYaFStENwkRp~~EV~~Lm 86 (253)
T 3qas_B 47 AKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALM 86 (253)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCC--------------
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEecCcccCCCHHHHHHHH
Confidence 4678888889999999999999999999999999988776
No 34
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=34.53 E-value=99 Score=22.75 Aligned_cols=80 Identities=8% Similarity=0.176 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEeecccccCCCCccHHHHHH-HH-HHHHhHhhcccccccccCcceeccccceEEEecc
Q 029197 68 EASLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQM-IS-TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFE 145 (197)
Q Consensus 68 ~~~L~~~~~~~L~~A~~~~~~SIAfPaLgtG~~g~p~~~~A~-i~-~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d 145 (197)
.+.|.+.+|.+++-|...|.+.+.+-.++. .|.-++.. +- ++ ++ +|.+|. .+.++.
T Consensus 14 ~E~l~n~fRk~fkD~R~~GskKvviNvis~----~~y~e~v~~~REAi---LD-------------NIDlG~--el~~WK 71 (126)
T 2rbg_A 14 NDNFENYFRKIFLDVRSSGSKKTTINVFTE----IQYQELVTLIREAL---LE-------------NIDIGY--ELFLWK 71 (126)
T ss_dssp GGGHHHHHHHHHHHHHHHTCSEEEEEEECS----SCHHHHHHHTHHHH---HH-------------TTTSEE--EEEEEC
T ss_pred hhhHHHHHHHHHHHHHhcCCceEEEEEecC----CcHHHHHHHHHHHH---Hh-------------ccccce--EEEEeC
Confidence 468999999999999999999999988776 44455333 33 45 33 222222 445555
Q ss_pred hhHHHHHHHHHHhhhhhcCCCccchhhhhh
Q 029197 146 QLVYQSLDQKIRGILQEIGLQNAQIMSICR 175 (197)
Q Consensus 146 ~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~ 175 (197)
++..+-+.+.+.++ +.+.++.+|-
T Consensus 72 p~eVdkm~~k~~q~------~~dGl~iYCD 95 (126)
T 2rbg_A 72 KNEVDIFLKNLEKS------EVDGLLVYCD 95 (126)
T ss_dssp GGGHHHHHHHHTTC------CCCEEEEEEC
T ss_pred HHHHHHHHHHHHHh------CCCceEEEeC
Confidence 55555554444332 6667776664
No 35
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=26.53 E-value=78 Score=23.73 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=30.1
Q ss_pred CCCeEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHcCCceEeec
Q 029197 49 PASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFP 93 (197)
Q Consensus 49 ~~k~IIH~v~P~~~~~~~~~~~L~~~~~~~L~~A~~~~~~SIAfP 93 (197)
.++.|||++++.|.... ...-....+++++.+.+.+ ..+.+.
T Consensus 62 ~~d~vi~~ag~~~~~~~--~~~n~~~~~~l~~a~~~~~-~~~v~~ 103 (224)
T 3h2s_A 62 SVDAVVDALSVPWGSGR--GYLHLDFATHLVSLLRNSD-TLAVFI 103 (224)
T ss_dssp TCSEEEECCCCCTTSSC--THHHHHHHHHHHHTCTTCC-CEEEEE
T ss_pred cCCEEEECCccCCCcch--hhHHHHHHHHHHHHHHHcC-CcEEEE
Confidence 37999999999876533 2334455688888888888 677665
No 36
>2ewc_A Conserved hypothetical protein; YJGF proteins family, COG025 putative translation initiation inhibitor; 2.15A {Streptococcus pyogenes} SCOP: d.79.1.1
Probab=25.27 E-value=1.9e+02 Score=20.66 Aligned_cols=33 Identities=3% Similarity=-0.029 Sum_probs=23.9
Q ss_pred ccCcceeccccceEEEecchhHHHHHHHHHHhhhhh
Q 029197 127 LEDVKNFEVGTSSKLMSFEQLVYQSLDQKIRGILQE 162 (197)
Q Consensus 127 ~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~~~~~~~ 162 (197)
..++++| .++.+.+.|.+.+..+.+.+.++|++
T Consensus 57 G~~l~~V---vk~~vyl~d~~df~~~n~v~~~~f~~ 89 (126)
T 2ewc_A 57 GLTLDAV---VQMDCLFRDVWNIPVMEKMIKERFNG 89 (126)
T ss_dssp TCCGGGE---EEEEEEESSGGGHHHHHHHHHHHSTT
T ss_pred CCCHHHE---EEEEEEECChhHHHHHHHHHHHHcCC
Confidence 4445554 23367777888899999999999975
No 37
>2cvl_A TTHA0137, protein translation initiation inhibitor; structural genomics, NPPSFA; 1.65A {Thermus thermophilus} SCOP: d.79.1.1 PDB: 2csl_A 2cw4_A
Probab=23.48 E-value=1.7e+02 Score=20.70 Aligned_cols=24 Identities=0% Similarity=-0.036 Sum_probs=19.9
Q ss_pred EEEecchhHHHHHHHHHHhhhhhc
Q 029197 140 KLMSFEQLVYQSLDQKIRGILQEI 163 (197)
Q Consensus 140 ~~v~~d~~~~~~f~~~~~~~~~~~ 163 (197)
.+.+.|.+.+..+.+.+.++|++.
T Consensus 74 ~vyl~d~~~~~~~~~~~~~~f~~~ 97 (124)
T 2cvl_A 74 TCFLADMEDFPGFNEVYARYFTPP 97 (124)
T ss_dssp EEEESCGGGHHHHHHHHHHHCCSS
T ss_pred EEEEcChHHHHHHHHHHHHHcCCC
Confidence 667777788999999999999764
No 38
>2b33_A Protein synthesis inhibitor, putative; putative endoribonuclease, STRU genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: d.79.1.1
Probab=23.15 E-value=2e+02 Score=21.05 Aligned_cols=34 Identities=6% Similarity=0.061 Sum_probs=24.0
Q ss_pred ccCcceeccccceEEEecchhHHHHHHHHHHhhhhhc
Q 029197 127 LEDVKNFEVGTSSKLMSFEQLVYQSLDQKIRGILQEI 163 (197)
Q Consensus 127 ~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~~~~~~~~ 163 (197)
..++++| .++.+.+.|.+.+..+.+.+.++|++.
T Consensus 78 G~~l~~V---vk~tvyl~d~~df~~~n~v~~~~f~~~ 111 (140)
T 2b33_A 78 GFSLKDV---VKVTVFTTSMDYFQRVNEVYSRYFGDH 111 (140)
T ss_dssp TCCGGGE---EEEEEEESCGGGHHHHHHHHHHHHTTT
T ss_pred CCCHHHE---EEEEEEECCchhHHHHHHHHHHHCCCC
Confidence 3445544 233667778888999999999999754
No 39
>3r0p_A L-PSP putative endoribonuclease; hydrolase; 1.90A {Uncultured organism} SCOP: d.79.1.0
Probab=22.49 E-value=1.8e+02 Score=20.64 Aligned_cols=33 Identities=3% Similarity=0.083 Sum_probs=23.7
Q ss_pred ccCcceeccccceEEEecchhHHHHHHHHHHhhhhh
Q 029197 127 LEDVKNFEVGTSSKLMSFEQLVYQSLDQKIRGILQE 162 (197)
Q Consensus 127 ~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~~~~~~~ 162 (197)
..++++| .++.+.+.|.+.+..+.+.+.++|++
T Consensus 68 g~~l~~v---vk~~vyl~d~~~~~~~~~v~~~~f~~ 100 (127)
T 3r0p_A 68 GGGLRDI---VKLNVYLTDLANFPIVNEVMGQYFQA 100 (127)
T ss_dssp TSCGGGE---EEEEEEESCGGGHHHHHHHHHHHCCS
T ss_pred CCCHHHE---EEEEEEEcCHHHHHHHHHHHHHHcCC
Confidence 3445544 23377777888899999999999975
No 40
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=21.88 E-value=81 Score=23.46 Aligned_cols=43 Identities=7% Similarity=-0.018 Sum_probs=29.4
Q ss_pred CCCeEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHcCCceEeeccc
Q 029197 49 PASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAI 95 (197)
Q Consensus 49 ~~k~IIH~v~P~~~~~~~~~~~L~~~~~~~L~~A~~~~~~SIAfPaL 95 (197)
.++.|||.+++.... ...-....+++++.+.+.+...+.+.+=
T Consensus 61 ~~d~vi~~ag~~~~~----~~~~~~~~~~l~~a~~~~~~~~~v~~SS 103 (221)
T 3ew7_A 61 DQNVVVDAYGISPDE----AEKHVTSLDHLISVLNGTVSPRLLVVGG 103 (221)
T ss_dssp TCSEEEECCCSSTTT----TTSHHHHHHHHHHHHCSCCSSEEEEECC
T ss_pred CCCEEEECCcCCccc----cchHHHHHHHHHHHHHhcCCceEEEEec
Confidence 379999999985432 1223446677788887777777777543
No 41
>1x25_A Hypothetical UPF0076 protein ST0811; YJGF-like protein, archaea, structural genomics, UNK function; 2.00A {Sulfolobus tokodaii} SCOP: d.79.1.1
Probab=21.87 E-value=1.8e+02 Score=20.61 Aligned_cols=33 Identities=0% Similarity=0.044 Sum_probs=23.4
Q ss_pred ccCcceeccccceEEEecchhHHHHHHHHHHhhhhh
Q 029197 127 LEDVKNFEVGTSSKLMSFEQLVYQSLDQKIRGILQE 162 (197)
Q Consensus 127 ~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~~~~~~~ 162 (197)
..++++| .++.+.+.|.+.+..+.+.+.++|++
T Consensus 68 g~~l~~v---vk~~vyl~d~~~~~~~n~~~~~~f~~ 100 (128)
T 1x25_A 68 GFSLSDV---AMAFVFLKDMNMFNDFNSVYAEYFKD 100 (128)
T ss_dssp TCCGGGE---EEEEEEESCGGGHHHHHHHHHHHCCS
T ss_pred CCCHHHE---EEEEEEECCHHHHHHHHHHHHHHcCC
Confidence 3444444 23366777878899999999999975
No 42
>3v4d_A Aminoacrylate peracid reductase RUTC; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 1.95A {Escherichia coli O6}
Probab=21.67 E-value=1.8e+02 Score=20.83 Aligned_cols=33 Identities=6% Similarity=0.086 Sum_probs=23.7
Q ss_pred ccCcceeccccceEEEecchhHHHHHHHHHHhhhhh
Q 029197 127 LEDVKNFEVGTSSKLMSFEQLVYQSLDQKIRGILQE 162 (197)
Q Consensus 127 ~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~~~~~~~ 162 (197)
..++++| .++.+.+.|.+.+..+.+.+.++|++
T Consensus 73 G~~l~~v---vk~~vyl~d~~~f~~~n~v~~~~f~~ 105 (134)
T 3v4d_A 73 GGTMADV---TFNSIFITDWKNYAAINEIYAEFFPG 105 (134)
T ss_dssp TCCGGGE---EEEEEEESCGGGHHHHHHHHHHHCCS
T ss_pred CCCHHHe---EEEEEEECCHHHHHHHHHHHHHHcCC
Confidence 3445554 23366777888899999999999974
No 43
>3m1x_A Putative endoribonuclease L-PSP; structural genomics, seattle structural genomics center for infectious disease, ssgcid, unknown function; HET: FLC; 1.20A {Entamoeba histolytica} PDB: 3m4s_A 3mqw_A*
Probab=21.54 E-value=2.3e+02 Score=20.87 Aligned_cols=42 Identities=0% Similarity=-0.081 Sum_probs=28.3
Q ss_pred HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHHHHHHhhhhh
Q 029197 112 TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIRGILQE 162 (197)
Q Consensus 112 ~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~~~~~~~ 162 (197)
-+..-++. ...++++| .++.+.+.|.+.+..+.+.+.++|++
T Consensus 80 nl~aiL~~------aG~~l~~V---vk~tvyl~d~~df~~~n~v~~~~fg~ 121 (148)
T 3m1x_A 80 NLKYVLEE------AGSSMDKV---VKTTCLLADIKDFGVFNGIYAEAFGN 121 (148)
T ss_dssp HHHHHHHH------TTCCGGGE---EEEEEEESCGGGHHHHHHHHHHHHTT
T ss_pred HHHHHHHH------cCCCHHHE---EEEEEEECCHHHHHHHHHHHHHHhCC
Confidence 55445663 34455554 23366777878899999999999974
No 44
>1jd1_A Hypothetical 13.9 kDa protein in FCY2-PET117 intergenic region; translation inhibitor, structural genomics, PSI; 1.70A {Saccharomyces cerevisiae} SCOP: d.79.1.1
Probab=21.37 E-value=2e+02 Score=20.48 Aligned_cols=33 Identities=0% Similarity=0.037 Sum_probs=23.9
Q ss_pred ccCcceeccccceEEEecchhHHHHHHHHHHhhhhh
Q 029197 127 LEDVKNFEVGTSSKLMSFEQLVYQSLDQKIRGILQE 162 (197)
Q Consensus 127 ~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~~~~~~~ 162 (197)
..++++| .++.+.+.|.+.+..+.+.+.++|++
T Consensus 68 G~~~~~v---vk~~vyl~d~~d~~~~n~~~~~~f~~ 100 (129)
T 1jd1_A 68 NSSLDRV---VKVNIFLADINHFAEFNSVYAKYFNT 100 (129)
T ss_dssp TCCGGGE---EEEEEEESCGGGHHHHHHHHHHHSSS
T ss_pred CCCHHHe---EEEEEEEcChHHHHHHHHHHHHHcCC
Confidence 3444544 23367777888899999999999976
No 45
>3i7t_A RV2704, putative uncharacterized protein; siras, YJGF/YER057C/UK114, homotrimer, quick SOAK NAI deriva unknown function; 1.93A {Mycobacterium tuberculosis}
Probab=21.00 E-value=2.3e+02 Score=21.07 Aligned_cols=24 Identities=4% Similarity=0.115 Sum_probs=19.9
Q ss_pred EEEecchhHHHHHHHHHHhhhhhc
Q 029197 140 KLMSFEQLVYQSLDQKIRGILQEI 163 (197)
Q Consensus 140 ~~v~~d~~~~~~f~~~~~~~~~~~ 163 (197)
.+.+.|.+.+..+.+.+.++|++.
T Consensus 70 tvyl~d~~df~~~n~v~~~~f~~~ 93 (149)
T 3i7t_A 70 RIYVTDISRWREVGEVHAQAFGKI 93 (149)
T ss_dssp EEEESCGGGHHHHHHHHHHHHTTT
T ss_pred EEEECCHHHHHHHHHHHHHHcCCC
Confidence 667778788999999999999763
No 46
>2cwj_A Putative endonuclease; hydrolase, endoribonucrease, structural GE NPPSFA, national project on protein structural and function analyses; 3.60A {Aeropyrum pernix} SCOP: d.79.1.1
Probab=20.92 E-value=1.7e+02 Score=20.62 Aligned_cols=24 Identities=4% Similarity=0.101 Sum_probs=20.0
Q ss_pred EEEecchhHHHHHHHHHHhhhhhc
Q 029197 140 KLMSFEQLVYQSLDQKIRGILQEI 163 (197)
Q Consensus 140 ~~v~~d~~~~~~f~~~~~~~~~~~ 163 (197)
.+.+.|.+.+..+.+.+.++|++.
T Consensus 70 ~vyl~d~~df~~~n~~~~~~f~~~ 93 (123)
T 2cwj_A 70 TVYITDISRFSEFNEVYREYFNRP 93 (123)
T ss_dssp EEEESSSSHHHHHHHHHHTTCCSS
T ss_pred EEEEcCHHHHHHHHHHHHHHcCCC
Confidence 777778888999999999999754
No 47
>1qah_A Perchloric acid soluble protein; alpha-beta structure; 1.80A {Rattus norvegicus} SCOP: d.79.1.1 PDB: 1oni_A 1nq3_A
Probab=20.74 E-value=1.7e+02 Score=21.09 Aligned_cols=33 Identities=9% Similarity=0.118 Sum_probs=23.6
Q ss_pred ccCcceeccccceEEEecchhHHHHHHHHHHhhhhh
Q 029197 127 LEDVKNFEVGTSSKLMSFEQLVYQSLDQKIRGILQE 162 (197)
Q Consensus 127 ~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~~~~~~~ 162 (197)
..++++| .++.+.+.|.+.+..+.+.+.++|++
T Consensus 69 G~~l~~v---vk~~vyl~d~~d~~~~n~~~~~~f~~ 101 (136)
T 1qah_A 69 GCDFTNV---VKTTVLLADINDFGTVNEIYKTYFQG 101 (136)
T ss_dssp TCCGGGE---EEEEEEESCGGGHHHHHHHHHTTCCS
T ss_pred CCCHHHE---EEEEEEEccCccHHHHHHHHHHHcCC
Confidence 3444444 23367777888899999999999975
Done!