BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029198
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 67/157 (42%), Gaps = 22/157 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESVL 139
SA VY + +P+ E+ T P+S + K KL E +L
Sbjct: 124 SATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQIL 160
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 67/157 (42%), Gaps = 22/157 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESVL 139
SA VY + +P+ E+ T P+S + K KL E +L
Sbjct: 124 SATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQIL 160
>pdb|4B4O|A Chain A, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|B Chain B, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|C Chain C, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|D Chain D, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|E Chain E, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|F Chain F, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|G Chain G, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|H Chain H, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
Length = 298
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAP 31
GGT FIG L++LL GH+VTL +R P
Sbjct: 7 GGTGFIGTALTQLLNARGHEVTLVSRKPGP 36
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 22/157 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESVL 139
SA VY +P+ E+ T P+S + K KL E +L
Sbjct: 124 SATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQIL 160
>pdb|3GPI|A Chain A, Structure Of Putative Nad-Dependent EpimeraseDEHYDRATASE
From Methylobacillus Flagellatus
Length = 286
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 67/164 (40%), Gaps = 18/164 (10%)
Query: 1 MGGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFS-----SKILHLK 55
+ G +G+ L+R L +GH+VT R AQ +P A+ + + I+HL+
Sbjct: 8 IAGCGDLGLELARRLTAQGHEVTGLRRS----AQPMPAGVQTLIADVTRPDTLASIVHLR 63
Query: 56 GDRKDYDFVKSSLSAKGFDVVYDINGREADEVEPILDALPN--LEQFIYCSSAGVYLKSD 113
+ Y S S + + + Y + + L AL L+ + SS GVY +
Sbjct: 64 PEILVYCVAASEYSDEHYRLSY------VEGLRNTLSALEGAPLQHVFFVSSTGVY-GQE 116
Query: 114 LLPHCETDTVDPKSRHKGKLNTESVLESKGVNWTSLRPVYIYGP 157
+ + DT GK E+ + T LR IYGP
Sbjct: 117 VEEWLDEDTPPIAKDFSGKRMLEAEALLAAYSSTILRFSGIYGP 160
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 22/157 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESVL 139
+A VY + +P+ E+ T P+S + K KL E +L
Sbjct: 124 TATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQIL 160
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 22/157 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESVL 139
+A VY + +P+ E+ T P+S + K KL E +L
Sbjct: 124 AATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQIL 160
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 33.5 bits (75), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 22/157 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESVL 139
+A VY +P+ E+ T P+S + K KL E +L
Sbjct: 124 AATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQIL 160
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 65/157 (41%), Gaps = 22/157 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESVL 139
SA VY +P+ E+ T P+S K KL E +L
Sbjct: 124 SATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQIL 160
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 22/157 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESVL 139
A VY + +P+ E+ T P+S + K KL E +L
Sbjct: 124 VATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQIL 160
>pdb|3SC4|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase (A0qtm2
Homolog) Mycobacterium Thermoresistibile
pdb|3SC4|B Chain B, Crystal Structure Of A Short Chain Dehydrogenase (A0qtm2
Homolog) Mycobacterium Thermoresistibile
Length = 285
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPG---ESDQEFAEFSSKILHLKGDR 58
GG+R IG+ +++ + +G V L + P +LPG + +E E + L + GD
Sbjct: 16 GGSRGIGLAIAKRVAADGANVALVAKSAEP-HPKLPGTIYTAAKEIEEAGGQALPIVGDI 74
Query: 59 KDYD 62
+D D
Sbjct: 75 RDGD 78
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 22/157 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESVL 139
+A VY + +P+ E+ T P+S K KL E +L
Sbjct: 124 AATVYGDNPKIPYVESFPTGTPQSPFGKSKLMVEQIL 160
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 22/157 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESVL 139
+A VY +P+ E+ T P+S K KL E +L
Sbjct: 124 AATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQIL 160
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 57/142 (40%), Gaps = 30/142 (21%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKG-DRKD 60
GG FIG L+R LV G +VT+ + P +P E +F E +L L+ D D
Sbjct: 14 GGAGFIGGHLARALVASGEEVTVLDDLRVP--PMIPPEGTGKFLE--KPVLELEERDLSD 69
Query: 61 YDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQ----FIYCSSAG--------- 107
V S K + +P LD L N++ C+S G
Sbjct: 70 VRLVYHLASHKSVPRSFK---------QP-LDYLDNVDSGRHLLALCTSVGVPKVVVGST 119
Query: 108 --VYLKSDLLPHCETDTVDPKS 127
VY ++D LP E + P+S
Sbjct: 120 CEVYGQADTLPTPEDSPLSPRS 141
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADE 86
KIL + ++ D +K +++ +G++VV NGREA E
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALE 39
>pdb|3QTG|A Chain A, Crystal Structure Of Pyruvate Kinase From Pyrobaculum
Aerophilum
pdb|3QTG|B Chain B, Crystal Structure Of Pyruvate Kinase From Pyrobaculum
Aerophilum
Length = 461
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 21/114 (18%)
Query: 24 LFTRGKAPIAQ------QLPGESDQEFAEFSSKI--------LHLKGDRKDYDFVKSSLS 69
+ T GKA + + P E D E + S I + L KD D V+S L+
Sbjct: 160 VITGGKAIVVEGKDYDISTPAEEDVEALKAISPIRDNIDYVAISLAKSCKDVDSVRSLLT 219
Query: 70 AKGFDVVYDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHCETDTV 123
GF + A ++E A+ NLE+ + CS V + DL H D +
Sbjct: 220 ELGF------QSQVAVKIE-TKGAVNNLEELVQCSDYVVVARGDLGLHYGLDAL 266
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADE 86
KIL + ++ D +K +++ +G++VV NGREA E
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALE 39
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 81/208 (38%), Gaps = 43/208 (20%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDY 61
GG FIG L LV+ G++V + I Q+ G S + LH++ D KDY
Sbjct: 7 GGAGFIGSHLVDKLVELGYEVVVVD-----IVQRDTGGSAE---------LHVR-DLKDY 51
Query: 62 DFVKSSLSAKGFDVVYDINGR---EADEVEPILDALPN---------------LEQFIYC 103
+ KG DVV+ EPI+ N + ++
Sbjct: 52 SW---GAGIKG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFA 107
Query: 104 SSAGVYLKSDLLPHCETDTVDPKS-----RHKGKLNTESVLESKGVNWTSLRPVYIYGP- 157
SS+ VY +D++P E + P S + G++ + GV ++R + GP
Sbjct: 108 SSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPR 167
Query: 158 LNYNPVEEWFFHRLKAGRPIPIPGSGIQ 185
L + + ++ + + + G G Q
Sbjct: 168 LRHGVIYDFIMKLRRNPNVLEVLGDGTQ 195
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 70/178 (39%), Gaps = 9/178 (5%)
Query: 7 IGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFS----SKILHLKGDRKDYD 62
IG ++ LL++ G +V + L + F E S + + L GD +
Sbjct: 33 IGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDA 92
Query: 63 FVKSSLSAKGFDVVYDINGREADEVEPILDALP--NLEQFIYCSSAGVY-LKSDLLPHCE 119
V ++ S K D Y+ ++ A N+ +F+Y +A Y +K P
Sbjct: 93 VVHTAASYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPVRL 152
Query: 120 TDTVDP--KSRHKGKLNTESVLESKGVNWTSLRPVYIYGPLNYNPVEEWFFHRLKAGR 175
+P S K E LE G+++ + R + GP N + FF RL G+
Sbjct: 153 DHPRNPANSSYAISKSANEDYLEYSGLDFVTFRLANVVGPRNVSGPLPIFFQRLSEGK 210
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 82/208 (39%), Gaps = 39/208 (18%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDY 61
GG FIG L LV+ G++V + + +EF S++ LH++ D KDY
Sbjct: 7 GGAGFIGSHLVDKLVELGYEVVVVDNLSS---------GRREFVNPSAE-LHVR-DLKDY 55
Query: 62 DFVKSSLSAKGFDVVYDINGR---EADEVEPILDALPN---------------LEQFIYC 103
+ KG DVV+ EPI+ N + ++
Sbjct: 56 SW---GAGIKG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFA 111
Query: 104 SSAGVYLKSDLLPHCETDTVDPKS-----RHKGKLNTESVLESKGVNWTSLRPVYIYGP- 157
SS+ VY +D++P E + P S + G++ + GV ++R + GP
Sbjct: 112 SSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPR 171
Query: 158 LNYNPVEEWFFHRLKAGRPIPIPGSGIQ 185
L + + ++ + + + G G Q
Sbjct: 172 LRHGVIYDFIMKLRRNPNVLEVLGDGTQ 199
>pdb|3NKU|A Chain A, Crystal Structure Of The N-Terminal Domain Of DrraSIDM
FROM Legionella Pneumophila
pdb|3NKU|B Chain B, Crystal Structure Of The N-Terminal Domain Of DrraSIDM
FROM Legionella Pneumophila
Length = 213
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 80 NGREADEVEPILDALPNLEQFIYCSSAGVY 109
N + +V+P+ DAL NL Q I+ +S +Y
Sbjct: 114 NDEDIKKVKPVFDALNNLCQRIFTASNQIY 143
>pdb|1K87|A Chain A, Crystal Structure Of E.coli Puta (residues 1-669)
Length = 669
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 52 LHLKGDRKDYDFVKS---------SLSAKGFDVVYDINGREADEVEPILDALPNL 97
LH + R YD V +L A+ +D+ +I+ EAD +E LD L L
Sbjct: 333 LHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKL 387
>pdb|2DC5|A Chain A, Crystal Structure Of Mouse Glutathione S-Transferase, Mu7
(Gstm7) At 1.6 A Resolution
pdb|2DC5|B Chain B, Crystal Structure Of Mouse Glutathione S-Transferase, Mu7
(Gstm7) At 1.6 A Resolution
Length = 231
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 25 FTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDY-DFVKSSLSAKGFDVVYDINGRE 83
F + K +QLPG + ++EF K GD+ + DF+ YD+ R
Sbjct: 127 FEKLKPGYLEQLPGXX-RLYSEFLGKRPWFAGDKITFVDFI-----------AYDVLERN 174
Query: 84 ADEVEPILDALPNLEQFI 101
LDA PNL+ FI
Sbjct: 175 QVFEAKCLDAFPNLKDFI 192
>pdb|31BI|A Chain A, Interleukin-1 Beta (Il-1 Beta) (Mutant With Cys 71
Replaced By Ser) (C71s)
Length = 153
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 15/96 (15%)
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQFIYCSSAGVY 109
K LHL+G + V F + + + G E+++ P+ AL E+ +Y SS
Sbjct: 27 KALHLQGQDMEQQVV--------FSMSF-VQGEESNDKIPV--ALGLKEKNLYLSSV--- 72
Query: 110 LKSDLLPHCETDTVDPKSRHKGKLNTESVLESKGVN 145
LK D P + ++VDPK+ K K+ V +N
Sbjct: 73 LKDDK-PTLQLESVDPKNYPKKKMEKRFVFNKIEIN 107
>pdb|2XSW|A Chain A, Crystal Structure Of Human Inpp5e
pdb|2XSW|B Chain B, Crystal Structure Of Human Inpp5e
Length = 357
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 120 TDTVDPKSRHKGKLNTESVLESKGVNWTSLRPVY 153
TD V +SRHKG + S G+ + RPVY
Sbjct: 282 TDRVLYRSRHKGDICPVSYSSCPGIKTSDHRPVY 315
>pdb|1UZL|A Chain A, Maba From Mycobacterium Tuberculosis
pdb|1UZL|B Chain B, Maba From Mycobacterium Tuberculosis
Length = 247
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRG 28
GG R IG+ +++ L +GH+V + RG
Sbjct: 22 GGNRGIGLAIAQRLAADGHKVAVTHRG 48
>pdb|1UZM|A Chain A, Maba From Mycobacterium Tuberculosis
pdb|1UZM|B Chain B, Maba From Mycobacterium Tuberculosis
pdb|1UZN|A Chain A, Maba From Mycobacterium Tuberculosis
pdb|1UZN|B Chain B, Maba From Mycobacterium Tuberculosis
Length = 247
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRG 28
GG R IG+ +++ L +GH+V + RG
Sbjct: 22 GGNRGIGLAIAQRLAADGHKVAVTHRG 48
>pdb|2NTN|A Chain A, Crystal Structure Of Maba-c60v/g139a/s144l
pdb|2NTN|B Chain B, Crystal Structure Of Maba-c60v/g139a/s144l
Length = 267
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRG 28
GG R IG+ +++ L +GH+V + RG
Sbjct: 42 GGNRGIGLAIAQRLAADGHKVAVTHRG 68
>pdb|2P0Y|A Chain A, Crystal Structure Of Q88yi3_lacpl From Lactobacillus
Plantarum. Northeast Structural Genomics Consortium
Target Lpr6
Length = 341
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 13/57 (22%)
Query: 76 VYDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLPH----------CETDT 122
V D NG+E V+P++DA+ +Q + + L + +LP+ CE+D
Sbjct: 168 VTDKNGKEPQAVQPVIDAIXAADQIVLGPGS---LFTSILPNLTIGNIGRAVCESDA 221
>pdb|2DKN|A Chain A, Crystal Structure Of The 3-alpha-hydroxysteroid
Dehydrogenase From Pseudomonas Sp. B-0831 Complexed
With Nadh
pdb|2DKN|B Chain B, Crystal Structure Of The 3-alpha-hydroxysteroid
Dehydrogenase From Pseudomonas Sp. B-0831 Complexed
With Nadh
Length = 255
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFA 45
G IG L LL + GH V RG+A I L +E A
Sbjct: 8 GSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETA 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,216,842
Number of Sequences: 62578
Number of extensions: 262795
Number of successful extensions: 650
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 638
Number of HSP's gapped (non-prelim): 46
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)