BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029198
(197 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SA52|CP41B_ARATH Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic
OS=Arabidopsis thaliana GN=CSP41B PE=1 SV=1
Length = 378
Score = 370 bits (951), Expect = e-102, Method: Compositional matrix adjust.
Identities = 171/193 (88%), Positives = 188/193 (97%)
Query: 1 MGGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKD 60
MGGTRFIG+FLSR+LVKEGHQVTLFTRGK+PIA+QLPGESDQ+FA+FSSKILHLKGDRKD
Sbjct: 59 MGGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKD 118
Query: 61 YDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHCET 120
YDFVKSSLSA+GFDVVYDINGREA+EVEPIL+ALP LEQ+IYCSSAGVYLKSD+LPHCE
Sbjct: 119 YDFVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEE 178
Query: 121 DTVDPKSRHKGKLNTESVLESKGVNWTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIP 180
D VDPKSRHKGKL TES+L+SKGVNWTS+RPVYIYGPLNYNPVEEWFFHRLKAGRPIP+P
Sbjct: 179 DAVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVP 238
Query: 181 GSGIQVTQLGHVK 193
SGIQ++QLGHVK
Sbjct: 239 NSGIQISQLGHVK 251
>sp|Q9LYA9|CP41A_ARATH Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic
OS=Arabidopsis thaliana GN=CSP41A PE=1 SV=1
Length = 406
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 104/195 (53%), Gaps = 10/195 (5%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEF-SSKILHLKGDRKD 60
GG IG + ++ L+ GH VT+ T G ++++ F+E S + G+ +
Sbjct: 90 GGHAVIGFYFAKELLSAGHAVTILTVGDES-SEKMKKPPFNRFSEIVSGGGKTVWGNPAN 148
Query: 61 YDFVKSSLSAKGFDVVYDINGREADEVEPILDALPN--LEQFIYCSSAGVYLKSDLLPHC 118
V + + + FDVV D NG++ D V P++D + ++QF++ SSAG+Y ++ PH
Sbjct: 149 ---VANVVGGETFDVVLDNNGKDLDTVRPVVDWAKSSGVKQFLFISSAGIYKSTEQPPHV 205
Query: 119 ETDTVDPKSRHKGKLNTESVLESKGVNWTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 178
E D V + H + E L NW S RP Y+ G N EEWFF R+ R +P
Sbjct: 206 EGDAVKADAGH---VVVEKYLAETFGNWASFRPQYMIGSGNNKDCEEWFFDRIVRDRAVP 262
Query: 179 IPGSGIQVTQLGHVK 193
IPGSG+Q+T + HV+
Sbjct: 263 IPGSGLQLTNISHVR 277
>sp|P52577|IFRH_ARATH Isoflavone reductase homolog P3 OS=Arabidopsis thaliana
GN=At1g75280 PE=1 SV=1
Length = 310
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 12/149 (8%)
Query: 1 MGGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKD 60
+GGT +IG FL K GH R +A ++ + G++ Q F + ILH GD D
Sbjct: 11 IGGTGYIGKFLVEASAKAGHSTFALVR-EATLSDPVKGKTVQSFKDLGVTILH--GDLND 67
Query: 61 YDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHCE- 119
++ + ++ K DVV G ILD + + +L S+ +
Sbjct: 68 HESLVKAI--KQVDVVISTVGSMQ-----ILDQTKIISAIKEAGNVKRFLPSEFGVDVDR 120
Query: 120 TDTVDP-KSRHKGKLNTESVLESKGVNWT 147
T V+P KS GK+ +E++G+ +T
Sbjct: 121 TSAVEPAKSAFAGKIQIRRTIEAEGIPYT 149
>sp|Q6P0H7|CBR4_DANRE Carbonyl reductase family member 4 OS=Danio rerio GN=cbr4 PE=2
SV=1
Length = 237
Score = 37.4 bits (85), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAP---IAQQLPGES 40
GG+R IG S+LL + GH++ L +R K AQ LPGE+
Sbjct: 9 GGSRGIGRAASKLLAQRGHRIVLLSRNKEAAQSTAQSLPGEN 50
>sp|Q31I61|MURD_THICR UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Thiomicrospira
crunogena (strain XCL-2) GN=murD PE=3 SV=1
Length = 449
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%)
Query: 11 LSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSA 70
L + +V+ Q LF + KA IAQQLP E Q S +L K K D V S +
Sbjct: 358 LGQAVVQSCRQAILFGQDKAIIAQQLPQEKIQLVDTLSEAVLLAKTIAKSGDAVLFSPAC 417
Query: 71 KGFD 74
FD
Sbjct: 418 ASFD 421
>sp|Q17QH8|D39U1_BOVIN Epimerase family protein SDR39U1 OS=Bos taurus GN=SDR39U1 PE=2
SV=1
Length = 294
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAP 31
GGT FIG L++LL GH+VTL +R P
Sbjct: 7 GGTGFIGTALTQLLKARGHEVTLISRKPGP 36
>sp|P09147|GALE_ECOLI UDP-glucose 4-epimerase OS=Escherichia coli (strain K12) GN=galE
PE=1 SV=1
Length = 338
Score = 34.3 bits (77), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 22/157 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESVL 139
SA VY +P+ E+ T P+S + K KL E +L
Sbjct: 124 SATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQIL 160
>sp|O57314|DHB12_ANAPL Estradiol 17-beta-dehydrogenase 12 OS=Anas platyrhynchos
GN=HSD17B12 PE=2 SV=1
Length = 312
Score = 33.9 bits (76), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKD- 60
G T IG ++ L K G +V L +R K + Q+ GE +++ + I+ G+R+D
Sbjct: 55 GATDGIGKAYAKELAKRGMKVALISRSKEKL-DQVAGEITEQYGVETKVIVADFGEREDI 113
Query: 61 YDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQFI 101
YD +++ L V+ + G E +D +P+L++ I
Sbjct: 114 YDRIRAGLEGLEIGVLVNNVGISYSYPEYFID-VPDLDKTI 153
>sp|P39631|SPSK_BACSU Spore coat polysaccharide biosynthesis protein SpsK OS=Bacillus
subtilis (strain 168) GN=spsK PE=3 SV=3
Length = 283
Score = 33.9 bits (76), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 10/159 (6%)
Query: 7 IGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKS 66
+G+ L R L + G++V T+ IA Q F + I+ F
Sbjct: 13 LGLELCRQLKQAGYEVIALTKKMMNIADQRS--VRHSFGHYQPDIV-----VNSAAFTSV 65
Query: 67 SLSAKGFDVVYDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHCETDTVDPK 126
K D Y ING A L++ Q+++ S+ V+ P+ E D +DPK
Sbjct: 66 DQCEKELDKAYLINGIGA--YYTALESTRIGAQYVHISTDYVFNGKGTQPYREDDPLDPK 123
Query: 127 SRH-KGKLNTESVLESKGVNWTSLRPVYIYGPLNYNPVE 164
+ + K K E ++ + T +R ++YG N VE
Sbjct: 124 TIYGKSKRLGEELIRLTTKDSTIIRTSWVYGHGGSNFVE 162
>sp|P33119|GALE_CORDI UDP-glucose 4-epimerase OS=Corynebacterium diphtheriae (strain ATCC
700971 / NCTC 13129 / Biotype gravis) GN=galE PE=3 SV=2
Length = 328
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 71/184 (38%), Gaps = 48/184 (26%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPGESDQEFAEFSSKILHLK 55
GG ++G S +L+++GH+VT+ R P+ ++
Sbjct: 7 GGAGYVGSVCSTVLLEQGHEVTIVDNLTTGNRDAVPLGATF-----------------VE 49
Query: 56 GDRKDYDFVKSSLSAKGFDVVYDINGRE--ADEVE--------------PILDALP--NL 97
GD K D + LS+ FD V R + VE +LDA+ N+
Sbjct: 50 GDIK--DVADNVLSSDSFDAVLHFAARSLVGESVEKPDEYWQHNMVTTLALLDAMKRNNV 107
Query: 98 EQFIYCSSAGVYLKSDLLPHCETDTVDPKSRHKG-KLNTESVLES----KGVNWTSLRPV 152
++ S+A Y + + +P E P + + KL+ + + S G TSLR
Sbjct: 108 RNIVFSSTAATYGEPETVPITEDAPTHPTNPYGATKLSIDYAITSYAHAYGFAATSLRYF 167
Query: 153 YIYG 156
+ G
Sbjct: 168 NVAG 171
>sp|Q45291|GALE_CORGL UDP-glucose 4-epimerase OS=Corynebacterium glutamicum (strain ATCC
13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=galE PE=3 SV=2
Length = 329
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 36/178 (20%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDY 61
GG ++G + +L++ GH VT+ + +P ++ ++GD
Sbjct: 7 GGAGYVGSVAAAVLLEHGHDVTIIDNFSTGNREAVPADARL-----------IEGDVN-- 53
Query: 62 DFVKSSLSAKGFDVVYDINGRE--ADEVE--------------PILDAL--PNLEQFIYC 103
D V+ LS GF+ V R + VE +LDA+ + ++
Sbjct: 54 DVVEEVLSEGGFEGVVHFAARSLVGESVEKPNEYWHDNVVTALTLLDAMRAHGVNNLVFS 113
Query: 104 SSAGVYLKSDLLPHCETDTVDPKSRHKG-KLNTESVLESK----GVNWTSLRPVYIYG 156
S+A Y + D++P E P + + KL+ + + S G+ TSLR + G
Sbjct: 114 STAATYGEPDVVPITEDMPTQPTNAYGATKLSIDYAITSYAAAFGLAATSLRYFNVAG 171
>sp|P22715|GALE_SALTY UDP-glucose 4-epimerase OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=galE PE=3 SV=2
Length = 338
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 22/157 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALIT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDVV-----YDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ I+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVARPLEYYDNNVNGTLRLVSAMRA-ANVKNLIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESVL 139
SA VY +P+ E+ T P+S + K KL E +L
Sbjct: 124 SATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQIL 160
>sp|Q56093|GALE_SALTI UDP-glucose 4-epimerase OS=Salmonella typhi GN=galE PE=3 SV=2
Length = 338
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 22/157 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALIT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDVV-----YDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ I+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVAKPLEYYDNNVNGTLRLVSAMRA-ANVKNLIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESVL 139
SA VY +P+ E+ T P+S + K KL E +L
Sbjct: 124 SATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQIL 160
>sp|Q7WTB1|GALE_LACHE UDP-glucose 4-epimerase OS=Lactobacillus helveticus GN=galE PE=2
SV=1
Length = 330
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 22/173 (12%)
Query: 1 MGGTRFIGVFLSRLLVKEGHQV----TLFT---RGKAPIAQQLPGESDQEFAEFSSKILH 53
+GG +IG R LVKEG+ V L+T + P A+ G+ + F SKIL
Sbjct: 6 IGGAGYIGSHAVRELVKEGNDVLVLDALYTGHRKAVDPKAKFYQGDIEDTF--LVSKILR 63
Query: 54 LKGDRKDYDFVKSSL---SAKGFDVVYDINGREADEVEPILDAL--PNLEQFIYCSSAGV 108
+ F SL S K YD N + +L A+ N++ ++ SSA
Sbjct: 64 DEKIDAVMHFAAYSLVPESVKKPLKYYDNN---VTGMISLLQAMNDANVKYLVFSSSAAT 120
Query: 109 YLKSDLLPHCETDTVDPKSRH-KGKLNTESVL----ESKGVNWTSLRPVYIYG 156
Y LP E ++P + + + K+ E ++ ++ G+ +T+LR + G
Sbjct: 121 YGIPKKLPITEDTPLNPINPYGETKMMMEKIMAWADKADGIKYTALRYFNVAG 173
>sp|Q5E9H7|DHB12_BOVIN Estradiol 17-beta-dehydrogenase 12 OS=Bos taurus GN=HSD17B12 PE=2
SV=1
Length = 312
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKD- 60
GGT IG + L K G ++ L +R + + Q+ E ++F + +K + + +D
Sbjct: 57 GGTDGIGKSYAEELAKRGMKIVLISRSQDKL-DQVSSEISEKF-KVETKTIAVDFTSEDI 114
Query: 61 YDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQFI 101
YD +K+SL+ V+ + G + E LD +P+L+ I
Sbjct: 115 YDKIKASLAGLNIGVLVNNVGMSYEYPEYFLD-VPDLDNTI 154
>sp|Q04ED0|SECA_OENOB Protein translocase subunit SecA OS=Oenococcus oeni (strain ATCC
BAA-331 / PSU-1) GN=secA PE=3 SV=1
Length = 788
Score = 32.0 bits (71), Expect = 2.4, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 53 HLKGDRKDYD------FVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQF 100
H G +KD+D FV ++L G V D+NG+ ++++ +L L N E F
Sbjct: 646 HTTGQQKDWDLLSIVDFVDNALDNSGEITVADLNGKSLNDIKVLLYDLANREFF 699
>sp|Q9SK66|NDUA9_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9,
mitochondrial OS=Arabidopsis thaliana GN=At2g20360 PE=2
SV=2
Length = 402
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGK--APIAQQLPGESDQEFAEFSSKILHLKGDRK 59
G T F+G +L + L K G QV + RG +P +L G+ Q ++ +K D +
Sbjct: 75 GATGFLGRYLVQQLAKMGSQVLVPFRGSEDSPRHLKLMGDLGQ--------VVPMKFDPR 126
Query: 60 DYDFVKSSLSAKGFDVVYDINGRE 83
D D +K+ ++ +VV ++ GRE
Sbjct: 127 DEDSIKAVMAKA--NVVINLIGRE 148
>sp|B0WSX1|MOCO2_CULQU Molybdenum cofactor sulfurase 2 OS=Culex quinquefasciatus GN=mal2
PE=3 SV=1
Length = 760
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 93 ALPNLEQFIYCSSAGVYLKSDLLPHCETDTVDPK-----SRHKGKLNTESVLESKGVNWT 147
AL N QF+ + A V +DL+P + + +P R +G L +SV + +WT
Sbjct: 624 ALSNQAQFLLINQASVRWLADLVPDWDDLSQEPTLESLVDRFRGNLIIDSVKPLEESSWT 683
Query: 148 SLRPVYIYGPLNYN 161
LR GPL ++
Sbjct: 684 QLR----IGPLEFS 693
>sp|B2SG17|TIG_FRATM Trigger factor OS=Francisella tularensis subsp. mediasiatica
(strain FSC147) GN=tig PE=3 SV=1
Length = 438
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 20/121 (16%)
Query: 42 QEFAEFSS--KILHLKGDRKDYDFVKSSLSAKGFDV------VYDINGREADEVEPILDA 93
+E AEF + ++ + D + +K AKGFDV +++ N ++ E ILD+
Sbjct: 293 REIAEFETPKSLIKREIDAAKQNLLKQMGGAKGFDVNQLPDNLFEANAKQKVETSLILDS 352
Query: 94 LPNLEQFIYCSSAGVYLKSDLLPHCETDTVDP-KSRHKGKLNTES-------VLESKGVN 145
+ NL++F + L +L+ E +P K++ + K N + V+E+K +
Sbjct: 353 IMNLQEFKAEEAEVESLLDELVQAYE----EPEKTKEQIKKNDKEIANLKALVIENKLTD 408
Query: 146 W 146
W
Sbjct: 409 W 409
>sp|Q54KB8|SYEC_DICDI Probable glutamate--tRNA ligase, cytoplasmic OS=Dictyostelium
discoideum GN=gluS PE=2 SV=1
Length = 764
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 16 VKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSAKGFDV 75
+KEG +VTL G A I + L + + + K LHL+GD K D S LS+ D
Sbjct: 590 IKEGEEVTLMNWGNA-IVETLQRNENGDVVSMTGK-LHLEGDVKKTDKKLSWLSSDCADT 647
Query: 76 V 76
V
Sbjct: 648 V 648
>sp|P39630|RMLB_BACSU dTDP-glucose 4,6-dehydratase OS=Bacillus subtilis (strain 168)
GN=rfbB PE=1 SV=1
Length = 315
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 83/220 (37%), Gaps = 49/220 (22%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDY 61
GG FIG+ ++L+++E T + + +L +A ++ LK + + +
Sbjct: 9 GGAGFIGLTFTKLMLRE-------TDARITVLDKLT------YASHPEEMEKLKQNSR-F 54
Query: 62 DFVKSSLSA-----KGFDVVYD--IN-------GREADEVEPILDA-------------L 94
FVK +S + FD YD I+ R + EP +
Sbjct: 55 RFVKGDISVQEDIDRAFDETYDGVIHFAAESHVDRSISQAEPFITTNVMGTYRLAEAVLK 114
Query: 95 PNLEQFIYCSSAGVY--LKSDLLPHCETDTVDPKSRHKGKLNTESVLESKGVNWTSLRPV 152
++ I+ S+ VY LK+D ET + P + + + +L V L +
Sbjct: 115 GKAKKLIHISTDEVYGDLKADDPAFTETTPLSPNNPYSASKASSDLLVLSYVKTHKLPAI 174
Query: 153 YIYGPLNYNPVEE------WFFHRLKAGRPIPIPGSGIQV 186
NY P + K G P+P+ G G+Q+
Sbjct: 175 ITRCSNNYGPYQHSEKMIPTIIRHAKQGLPVPLYGDGLQI 214
>sp|P13395|SPTCA_DROME Spectrin alpha chain OS=Drosophila melanogaster GN=alpha-Spec PE=1
SV=2
Length = 2415
Score = 31.2 bits (69), Expect = 4.1, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 33 AQQLPGESDQEFAEFSSKILHLKGDRK---DYDFVKSSLSAKGFDVVYDINGREADEVEP 89
A+ G S+ EFS H D+ ++ KS L A G+D+ G+ E E
Sbjct: 2256 ARNHSGVSEDSLKEFSMMFKHFDKDKSGKLNHQEFKSCLRALGYDLPMVEEGQPDPEFEA 2315
Query: 90 ILDAL-PNLEQFI 101
ILD + PN + ++
Sbjct: 2316 ILDVVDPNRDGYV 2328
>sp|O08747|UNC5C_MOUSE Netrin receptor UNC5C OS=Mus musculus GN=Unc5c PE=1 SV=1
Length = 931
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 21/103 (20%)
Query: 52 LHLKGDRKDYDFVKSSLSAKG------FDVVYDINGREADEVEPILDALPNLEQFIYCSS 105
+++K R+D V L++ ++D++ + PILD LPNL+ +Y SS
Sbjct: 426 VNIKAARQDLLAVPPDLTSAAAMYRGPVYALHDVSDKIPMTNSPILDPLPNLKIKVYNSS 485
Query: 106 AGVYLKSDLLPHCETDTVDPKSRHKGKLN---TESVLESKGVN 145
V + DL + KL+ T+S+LE++ +N
Sbjct: 486 GAVTPQDDL------------AEFSSKLSPQMTQSLLENEALN 516
>sp|Q761X5|UNC5C_RAT Netrin receptor UNC5C OS=Rattus norvegicus GN=Unc5c PE=2 SV=1
Length = 931
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 21/103 (20%)
Query: 52 LHLKGDRKDYDFVKSSLSAKG------FDVVYDINGREADEVEPILDALPNLEQFIYCSS 105
+++K R+D V L++ ++D++ + PILD LPNL+ +Y SS
Sbjct: 426 VNIKAARQDLLAVPPDLTSAAAMYRGPVYALHDVSDKIPMTNSPILDPLPNLKIKVYNSS 485
Query: 106 AGVYLKSDLLPHCETDTVDPKSRHKGKLN---TESVLESKGVN 145
V + DL + KL+ T+S+LE++ +N
Sbjct: 486 GAVTPQDDL------------AEFSSKLSPQMTQSLLENEALN 516
>sp|Q2YCZ2|THIG_NITMU Thiazole synthase OS=Nitrosospira multiformis (strain ATCC 25196 /
NCIMB 11849) GN=thiG PE=3 SV=1
Length = 264
Score = 30.8 bits (68), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 47 FSSKILHLKGDRKDYDFVKSSLSAKGFDVVY----DINGREADEVEPILDALPNLEQFIY 102
+SS++L G +D+D ++++ A G +++ N + E +LD LP E +
Sbjct: 11 YSSRLLVGTGKYRDFDETRTAVDASGAEIITVAIRRTNLGQNPEEPSLLDVLPPSEYTLL 70
Query: 103 CSSAGVYLKSD 113
++AG Y D
Sbjct: 71 PNTAGCYTVED 81
>sp|Q5M8N4|D39U1_MOUSE Epimerase family protein SDR39U1 OS=Mus musculus GN=Sdr39u1 PE=1
SV=1
Length = 308
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAP 31
GGT FIG +++LL GH+V L +R P
Sbjct: 7 GGTGFIGTAVTQLLRGRGHEVKLVSRQPGP 36
>sp|Q6KAI0|PNP2_ORYSJ Polyribonucleotide nucleotidyltransferase 2, mitochondrial OS=Oryza
sativa subsp. japonica GN=PNP2 PE=2 SV=1
Length = 982
Score = 30.4 bits (67), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 17/84 (20%)
Query: 25 FTRGKA--PIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSAKGFDVVYDINGR 82
F RG+A I Q + + ++E E S K LH D ++ + KG V +GR
Sbjct: 328 FERGEALENITQSVKAKLEEECDEDSLKFLHKAVDTVRKQVIRKRIIEKGLRV----DGR 383
Query: 83 EADEVEPILDALPNLEQFIYCSSA 106
+ DEV P +YC S+
Sbjct: 384 QLDEVRP-----------LYCESS 396
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,709,343
Number of Sequences: 539616
Number of extensions: 3295234
Number of successful extensions: 8237
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 8223
Number of HSP's gapped (non-prelim): 35
length of query: 197
length of database: 191,569,459
effective HSP length: 111
effective length of query: 86
effective length of database: 131,672,083
effective search space: 11323799138
effective search space used: 11323799138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)