BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029199
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KLX|A Chain A, Helicobacter Pylori Cysteine Rich Protein B (Hcpb)
Length = 138
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 65 DSQGVEEYYKKMVEENPGNPL-FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILS 123
+ Q + +Y K E N GN FL ++ + K+DL KA +YYS+A + DG ++
Sbjct: 40 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLIL 99
Query: 124 QYAKLVWE-LHNDQDRAATYYERAVHASPEDS 154
Y + + + ++ +A +E+A ED+
Sbjct: 100 GYKQYAGKGVVKNEKQAVKTFEKACRLGSEDA 131
>pdb|3ZHE|B Chain B, Structure Of The C. Elegans Smg5-smg7 Complex
pdb|3ZHE|D Chain D, Structure Of The C. Elegans Smg5-smg7 Complex
Length = 395
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 94 LYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPE 152
L + K++ PKA+EYY ++ +P DG + +Q L+ L + ++ RA+HA+ E
Sbjct: 139 LMRYKENYPKAQEYYEQSCRINPADGAVWNQLG-LISSLGAKNLESVYFHTRALHATME 196
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 65 DSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQ 124
D Q EYY+K +E +P N N Y+ + D KA EYY +A+ DP + + +
Sbjct: 24 DYQKAIEYYQKALELDPNNASAWYNLGNAYYK-QGDYQKAIEYYQKALELDPNNAKAWYR 82
Query: 125 YAKLVWELHNDQDRAATYYERAVHASPEDSHV 156
++ D +A Y++A+ P ++
Sbjct: 83 RGNAYYK-QGDYQKAIEDYQKALELDPNNAKA 113
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 95 YQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS 154
Y + D KA EYY +A+ DP + ++ D +A YY++A+ P ++
Sbjct: 19 YYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYK-QGDYQKAIEYYQKALELDPNNA 77
Query: 155 HV 156
Sbjct: 78 KA 79
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 71 EYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVW 130
+YY+ +E +P P+F SN + Y S DL K E+ ++A+ P + L + A
Sbjct: 46 KYYQYAIELDPNEPVFYSNISA-CYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104
Query: 131 ELHNDQD 137
L N D
Sbjct: 105 SLGNFTD 111
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 71 EYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVW 130
+YY+ +E +P P+F SN + Y S DL K E+ ++A+ P + L + A
Sbjct: 42 KYYQYAIELDPNEPVFYSNISA-CYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 100
Query: 131 ELHNDQD 137
L N D
Sbjct: 101 SLGNFTD 107
>pdb|1JBA|A Chain A, Unmyristoylated Gcap-2 With Three Calcium Ions Bound
Length = 204
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 65 DSQGVEEYYKKMVEENPGNPLFLSNYAQFL 94
D+ ++E+YKK +EE P LF+ + +F
Sbjct: 20 DAAQLQEWYKKFLEECPSGTLFMHEFKRFF 49
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 73 YKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKL--VW 130
Y K +E P + SN ++ ++ ++ A ++ +A+ DP L Y L V
Sbjct: 158 YLKAIETQPNFAVAWSNLG-CVFNAQGEIWLAIHHFEKAVTLDPN---FLDAYINLGNVL 213
Query: 131 ELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWE 166
+ DRA Y RA+ SP + VH + A +E
Sbjct: 214 KEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 71 EYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVW 130
EYY+K +E +P + N Y+ + D +A EYY +A+ DP E +
Sbjct: 22 EYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Query: 131 ELHNDQDRAATYYERAVHASP 151
+ D D A YY++A+ P
Sbjct: 81 K-QGDYDEAIEYYQKALELDP 100
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 71 EYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVW 130
EYY+K +E +P + N Y+ + D +A EYY +A+ DP E +
Sbjct: 56 EYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 114
Query: 131 ELHNDQDRAATYYERAVHASP 151
+ D D A YY++A+ P
Sbjct: 115 K-QGDYDEAIEYYQKALELDP 134
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 71 EYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVW 130
EYY+K +E P N N Y+ + D +A EYY +A+ P + E +
Sbjct: 30 EYYQKALELYPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELYPNNAEAWYNLGNAYY 88
Query: 131 ELHNDQDRAATYYERAVHASPEDS 154
+ D D A YY++A+ P ++
Sbjct: 89 K-QGDYDEAIEYYQKALELYPNNA 111
>pdb|4GA2|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 73 YKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWEL 132
Y + E +P FL LY+ +++ KA E Y R++ +P +++ + A+L+ +
Sbjct: 57 YINVQERDPKAHRFLG----LLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKN 112
Query: 133 HNDQDRAATYYERAVHASPEDSHVH 157
RA + ERA P V+
Sbjct: 113 DVTDGRAKYWVERAAKLFPGSPAVY 137
>pdb|4GA1|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 73 YKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWEL 132
Y + E +P FL LY+ +++ KA E Y R++ +P +++ + A+L+ +
Sbjct: 57 YINVQERDPKAHRFLG----LLYELEENTDKAVECYRRSVELNPXQKDLVLKIAELLCKN 112
Query: 133 HNDQDRAATYYERAVHASPEDSHVH 157
RA + ERA P V+
Sbjct: 113 DVTDGRAKYWVERAAKLFPGSPAVY 137
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 100 DLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHAS 159
DLP + AIL DPGD E Q+ + + ++ A +R + P + +
Sbjct: 80 DLPVTILFMEAAILQDPGDAEAW-QFLGITQAENENEQAAIVALQRCLELQPNNLKALMA 138
Query: 160 YAGFLWETEEDNDECDA 176
A T D C+A
Sbjct: 139 LAVSYTNTSHQQDACEA 155
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 80 NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWEL 132
NP L + N +Q K D P+A ++Y+ AI +P D ++ S A +L
Sbjct: 12 NPDLALMVKNKGNECFQ-KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL 63
>pdb|4GA0|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 73 YKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWEL 132
Y + E +P FL LY+ +++ KA E Y R++ +P +++ + A+L+ +
Sbjct: 57 YINVQERDPKAHRFLG----LLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKN 112
Query: 133 HNDQDRAATYYERAVHASPEDSHVH 157
RA + ERA P ++
Sbjct: 113 DVTDGRAKYWLERAAKLFPGSPAIY 137
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 95 YQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS 154
Y + D +A EYY +A+ DP + E ++ D D A YY++A+ P ++
Sbjct: 19 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNA 77
Query: 155 HV 156
Sbjct: 78 EA 79
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 71 EYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGE 120
EYY+K +E +P N N Y+ + D +A EYY +A+ DP + E
Sbjct: 30 EYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAE 78
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 95 YQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS 154
Y + D +A EYY +A+ DP + E ++ D D A YY++A+ P ++
Sbjct: 19 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNA 77
Query: 155 HV 156
Sbjct: 78 EA 79
>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
Length = 265
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 70 EEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD-----PGDGEILSQ 124
+E Y+K + + N L+NY FLY+ K + EE Y R + A P +
Sbjct: 104 DEEYRKALASDSRNARVLNNYGGFLYEQK----RYEEAYQRLLEASQDTLYPERSRVFEN 159
Query: 125 YAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEE 169
+ ++ +A Y+E+++ + V A L++ E
Sbjct: 160 LGLVSLQMKKPA-QAKEYFEKSLRLNRNQPSVALEMADLLYKERE 203
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 93 FLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPE 152
F + + + + A+ +P D ++ + L + L N+ D AA RAV P+
Sbjct: 146 FFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVL-YNLSNNYDSAAANLRRAVELRPD 204
Query: 153 DSHV 156
D+ +
Sbjct: 205 DAQL 208
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 93 FLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPE 152
F + + + + A+ +P D ++ + L + L N+ D AA RAV P+
Sbjct: 146 FFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVL-YNLSNNYDSAAANLRRAVELRPD 204
Query: 153 DSHV 156
D+ +
Sbjct: 205 DAQL 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.127 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,566,971
Number of Sequences: 62578
Number of extensions: 210481
Number of successful extensions: 353
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 49
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (23.5 bits)