Query 029199
Match_columns 197
No_of_seqs 224 out of 2347
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 09:05:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029199.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029199hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 99.9 8.7E-22 1.9E-26 168.7 10.4 175 3-179 225-413 (966)
2 KOG4626 O-linked N-acetylgluco 99.8 4.2E-22 9.1E-27 170.6 3.3 175 3-179 191-379 (966)
3 TIGR00990 3a0801s09 mitochondr 99.8 9E-20 2E-24 162.6 11.5 156 3-180 338-493 (615)
4 PRK15359 type III secretion sy 99.8 4.2E-19 9E-24 130.7 10.0 104 63-168 37-140 (144)
5 KOG1126 DNA-binding cell divis 99.8 2.4E-19 5.2E-24 154.5 7.9 157 2-180 427-583 (638)
6 PRK12370 invasion protein regu 99.8 2.5E-18 5.4E-23 151.7 13.1 151 8-180 316-467 (553)
7 PRK11189 lipoprotein NlpI; Pro 99.8 8.5E-18 1.8E-22 137.6 13.2 152 5-179 35-190 (296)
8 PRK09782 bacteriophage N4 rece 99.8 3.1E-18 6.8E-23 158.3 11.7 172 5-180 518-703 (987)
9 PRK11189 lipoprotein NlpI; Pro 99.8 5.6E-18 1.2E-22 138.6 10.3 155 3-180 71-262 (296)
10 PRK10370 formate-dependent nit 99.7 2.8E-17 6E-22 127.1 13.2 117 63-180 52-170 (198)
11 PRK12370 invasion protein regu 99.7 1E-17 2.2E-22 147.9 12.1 158 10-180 275-432 (553)
12 TIGR00990 3a0801s09 mitochondr 99.7 1.7E-17 3.7E-22 148.0 13.1 149 10-180 308-459 (615)
13 PRK15174 Vi polysaccharide exp 99.7 1.6E-17 3.5E-22 149.1 11.8 155 4-180 220-378 (656)
14 COG3063 PilF Tfp pilus assembl 99.7 1.5E-17 3.3E-22 128.0 9.5 120 59-180 44-165 (250)
15 TIGR02521 type_IV_pilW type IV 99.7 3E-17 6.4E-22 126.8 11.2 156 3-180 38-195 (234)
16 KOG1126 DNA-binding cell divis 99.7 2.1E-18 4.5E-23 148.7 4.8 116 63-180 434-549 (638)
17 COG3063 PilF Tfp pilus assembl 99.7 1.6E-17 3.6E-22 127.9 8.8 152 6-179 45-198 (250)
18 PRK15359 type III secretion sy 99.7 2.8E-17 6E-22 121.0 9.5 107 69-180 12-118 (144)
19 PRK10370 formate-dependent nit 99.7 6.4E-17 1.4E-21 125.1 11.4 129 6-155 49-179 (198)
20 PRK11447 cellulose synthase su 99.7 5.5E-17 1.2E-21 153.7 9.6 176 3-180 276-521 (1157)
21 PRK09782 bacteriophage N4 rece 99.7 8.8E-17 1.9E-21 148.8 10.5 148 10-180 590-737 (987)
22 TIGR02917 PEP_TPR_lipo putativ 99.7 1.3E-16 2.8E-21 145.0 11.1 114 63-179 783-896 (899)
23 PF13429 TPR_15: Tetratricopep 99.7 7E-17 1.5E-21 130.9 7.9 132 27-180 143-274 (280)
24 KOG0553 TPR repeat-containing 99.7 2.6E-16 5.7E-21 125.4 10.0 113 57-171 88-200 (304)
25 PRK15179 Vi polysaccharide bio 99.7 6.2E-16 1.3E-20 138.6 12.0 144 15-180 71-214 (694)
26 PRK15174 Vi polysaccharide exp 99.7 6.5E-16 1.4E-20 138.8 12.2 175 3-180 151-344 (656)
27 PRK11447 cellulose synthase su 99.7 8.1E-16 1.8E-20 145.8 13.0 160 3-183 358-558 (1157)
28 KOG1155 Anaphase-promoting com 99.7 8.9E-16 1.9E-20 128.2 11.0 156 3-180 337-492 (559)
29 TIGR02552 LcrH_SycD type III s 99.6 3.8E-15 8.3E-20 107.6 12.3 114 21-156 8-121 (135)
30 TIGR03302 OM_YfiO outer membra 99.6 9.4E-16 2E-20 121.0 9.6 156 3-180 40-229 (235)
31 PLN02789 farnesyltranstransfer 99.6 1.9E-15 4.1E-20 124.7 11.5 142 6-168 47-190 (320)
32 TIGR02552 LcrH_SycD type III s 99.6 2.8E-15 6E-20 108.4 10.7 108 71-180 4-111 (135)
33 PLN02789 farnesyltranstransfer 99.6 1.8E-15 3.9E-20 124.8 10.8 158 3-179 78-246 (320)
34 TIGR02521 type_IV_pilW type IV 99.6 2.6E-15 5.6E-20 115.9 10.8 155 3-179 72-228 (234)
35 COG5010 TadD Flp pilus assembl 99.6 9.2E-15 2E-19 114.6 12.4 115 63-179 113-227 (257)
36 KOG1155 Anaphase-promoting com 99.6 3.7E-15 8E-20 124.6 9.5 122 57-180 337-458 (559)
37 KOG1125 TPR repeat-containing 99.6 7E-16 1.5E-20 131.6 4.7 109 70-180 414-524 (579)
38 PLN03088 SGT1, suppressor of 99.6 4.6E-14 1E-18 118.3 15.1 105 63-169 15-119 (356)
39 PRK11788 tetratricopeptide rep 99.6 3.2E-15 6.9E-20 125.8 7.9 177 3-181 42-241 (389)
40 PRK15363 pathogenicity island 99.6 3.1E-14 6.7E-19 104.8 11.6 86 63-150 48-133 (157)
41 TIGR02917 PEP_TPR_lipo putativ 99.6 1.2E-14 2.7E-19 132.0 11.4 174 4-179 133-320 (899)
42 PRK15363 pathogenicity island 99.6 1.7E-14 3.7E-19 106.1 9.9 103 76-180 26-129 (157)
43 KOG0547 Translocase of outer m 99.6 6E-15 1.3E-19 124.0 7.6 150 9-179 407-562 (606)
44 PRK11788 tetratricopeptide rep 99.6 2E-14 4.4E-19 120.9 10.4 175 3-180 114-308 (389)
45 PRK10049 pgaA outer membrane p 99.6 4.6E-14 9.9E-19 129.0 13.3 153 7-182 26-178 (765)
46 KOG0553 TPR repeat-containing 99.5 2.8E-14 6.1E-19 113.9 7.4 112 2-134 87-198 (304)
47 KOG0547 Translocase of outer m 99.5 2.3E-14 5E-19 120.5 6.9 117 62-180 372-488 (606)
48 PRK10049 pgaA outer membrane p 99.5 1.8E-13 3.8E-18 125.2 10.8 171 6-180 247-453 (765)
49 TIGR03302 OM_YfiO outer membra 99.5 4.5E-13 9.7E-18 105.7 11.8 132 27-180 30-192 (235)
50 PF13429 TPR_15: Tetratricopep 99.5 4.3E-14 9.2E-19 114.6 5.0 175 3-180 51-240 (280)
51 KOG1125 TPR repeat-containing 99.5 3.7E-13 7.9E-18 115.1 9.7 123 28-172 428-560 (579)
52 KOG3060 Uncharacterized conser 99.4 1E-12 2.3E-17 102.7 10.9 146 1-167 91-238 (289)
53 PF13414 TPR_11: TPR repeat; P 99.4 7E-13 1.5E-17 84.9 8.2 69 82-151 1-69 (69)
54 KOG1173 Anaphase-promoting com 99.4 4.2E-13 9.1E-18 114.6 8.0 169 9-179 325-514 (611)
55 PRK15179 Vi polysaccharide bio 99.4 1.7E-12 3.6E-17 116.7 11.2 134 4-159 94-227 (694)
56 cd05804 StaR_like StaR_like; a 99.4 5.6E-13 1.2E-17 110.9 7.5 159 3-180 50-212 (355)
57 COG5010 TadD Flp pilus assembl 99.4 2.4E-12 5.2E-17 101.1 10.3 146 11-179 48-193 (257)
58 TIGR02795 tol_pal_ybgF tol-pal 99.4 1.3E-11 2.9E-16 86.4 12.8 94 63-158 15-114 (119)
59 COG4235 Cytochrome c biogenesi 99.4 5.8E-12 1.3E-16 101.0 11.9 117 63-180 135-253 (287)
60 KOG0548 Molecular co-chaperone 99.4 5.8E-12 1.3E-16 107.1 11.8 110 57-168 365-474 (539)
61 COG4783 Putative Zn-dependent 99.4 9.5E-12 2.1E-16 105.0 12.9 114 63-178 319-432 (484)
62 PRK02603 photosystem I assembl 99.4 2.6E-11 5.7E-16 91.5 13.0 120 26-169 31-166 (172)
63 KOG0550 Molecular chaperone (D 99.4 1E-12 2.2E-17 108.8 5.6 154 5-180 178-347 (486)
64 KOG1129 TPR repeat-containing 99.3 2.3E-12 4.9E-17 104.3 6.9 173 6-180 266-455 (478)
65 PF13432 TPR_16: Tetratricopep 99.3 5.8E-12 1.3E-16 79.7 7.5 64 89-154 2-65 (65)
66 KOG3060 Uncharacterized conser 99.3 3.1E-11 6.7E-16 94.6 11.5 150 8-179 64-216 (289)
67 PLN03088 SGT1, suppressor of 99.3 7.9E-12 1.7E-16 104.9 8.6 110 3-133 9-118 (356)
68 CHL00033 ycf3 photosystem I as 99.3 1.1E-10 2.4E-15 87.7 13.8 103 63-170 48-167 (168)
69 PRK14574 hmsH outer membrane p 99.3 1.1E-11 2.4E-16 113.3 9.0 179 3-184 41-233 (822)
70 PF12895 Apc3: Anaphase-promot 99.3 1.2E-11 2.6E-16 82.5 6.9 81 63-146 2-84 (84)
71 cd00189 TPR Tetratricopeptide 99.3 2.5E-11 5.4E-16 79.7 8.2 91 87-179 3-93 (100)
72 cd00189 TPR Tetratricopeptide 99.3 8.3E-11 1.8E-15 77.1 10.7 88 63-152 13-100 (100)
73 KOG1173 Anaphase-promoting com 99.3 5.8E-11 1.3E-15 101.7 12.0 102 63-166 427-535 (611)
74 TIGR00540 hemY_coli hemY prote 99.3 3E-11 6.5E-16 103.1 10.5 114 63-179 276-395 (409)
75 KOG4162 Predicted calmodulin-b 99.3 2.9E-11 6.3E-16 106.5 10.4 120 59-180 659-780 (799)
76 KOG2076 RNA polymerase III tra 99.3 5.4E-11 1.2E-15 106.3 12.2 116 63-180 152-267 (895)
77 PRK11906 transcriptional regul 99.3 6.1E-11 1.3E-15 100.4 11.4 125 64-191 272-407 (458)
78 CHL00033 ycf3 photosystem I as 99.2 7.7E-11 1.7E-15 88.6 10.3 112 64-177 13-136 (168)
79 TIGR02795 tol_pal_ybgF tol-pal 99.2 8.4E-11 1.8E-15 82.3 9.8 95 84-180 2-102 (119)
80 KOG1129 TPR repeat-containing 99.2 4E-12 8.6E-17 102.9 3.1 124 63-190 303-429 (478)
81 KOG0548 Molecular co-chaperone 99.2 3.8E-11 8.2E-16 102.2 8.5 115 63-179 337-451 (539)
82 COG4235 Cytochrome c biogenesi 99.2 1.6E-10 3.5E-15 92.7 11.4 122 12-154 138-261 (287)
83 PF13414 TPR_11: TPR repeat; P 99.2 3E-11 6.4E-16 77.3 5.7 67 29-116 2-69 (69)
84 KOG2002 TPR-containing nuclear 99.2 6.4E-11 1.4E-15 106.5 9.5 140 8-169 624-765 (1018)
85 cd05804 StaR_like StaR_like; a 99.2 3.5E-11 7.6E-16 100.1 7.4 116 63-180 56-174 (355)
86 KOG2003 TPR repeat-containing 99.2 2.9E-10 6.2E-15 95.8 11.7 127 56-184 496-626 (840)
87 PRK14574 hmsH outer membrane p 99.2 3.3E-10 7.1E-15 103.8 13.2 116 63-180 47-162 (822)
88 KOG1128 Uncharacterized conser 99.2 1.9E-11 4E-16 107.2 4.8 153 26-180 453-613 (777)
89 PF12895 Apc3: Anaphase-promot 99.2 1.3E-11 2.8E-16 82.3 3.0 80 98-179 2-83 (84)
90 KOG1156 N-terminal acetyltrans 99.2 1.5E-10 3.3E-15 100.4 9.9 151 8-180 19-169 (700)
91 PF09295 ChAPs: ChAPs (Chs5p-A 99.2 5.8E-10 1.3E-14 94.2 12.9 119 61-184 180-298 (395)
92 KOG4162 Predicted calmodulin-b 99.2 6.4E-11 1.4E-15 104.4 7.2 120 14-155 668-789 (799)
93 PF09976 TPR_21: Tetratricopep 99.2 7.5E-10 1.6E-14 81.3 11.7 114 63-179 24-143 (145)
94 KOG0543 FKBP-type peptidyl-pro 99.2 3.6E-10 7.8E-15 93.8 10.9 114 58-173 216-344 (397)
95 PRK15331 chaperone protein Sic 99.2 5.3E-10 1.2E-14 82.9 10.5 103 61-166 48-150 (165)
96 PF14559 TPR_19: Tetratricopep 99.1 1.7E-10 3.7E-15 73.5 6.9 64 98-162 4-67 (68)
97 KOG0550 Molecular chaperone (D 99.1 8E-11 1.7E-15 97.7 6.5 180 3-184 56-317 (486)
98 PRK02603 photosystem I assembl 99.1 4.5E-10 9.8E-15 84.8 9.8 98 72-171 21-123 (172)
99 PF13432 TPR_16: Tetratricopep 99.1 1.5E-10 3.2E-15 73.2 6.0 56 63-119 10-65 (65)
100 PRK10747 putative protoheme IX 99.1 5.6E-10 1.2E-14 95.0 11.4 130 24-179 257-386 (398)
101 PRK10153 DNA-binding transcrip 99.1 4E-10 8.6E-15 98.7 10.6 114 64-179 356-478 (517)
102 PF13371 TPR_9: Tetratricopept 99.1 6.4E-10 1.4E-14 71.8 8.9 69 92-162 3-71 (73)
103 PF06552 TOM20_plant: Plant sp 99.1 1.3E-09 2.8E-14 81.7 11.4 97 66-163 7-123 (186)
104 KOG2003 TPR repeat-containing 99.1 2.1E-10 4.5E-15 96.6 7.6 177 2-180 496-686 (840)
105 KOG2076 RNA polymerase III tra 99.1 4.2E-10 9.1E-15 100.7 9.9 152 6-179 149-305 (895)
106 PRK15331 chaperone protein Sic 99.1 3E-10 6.6E-15 84.2 7.3 102 77-180 30-131 (165)
107 PRK11906 transcriptional regul 99.1 9.3E-10 2E-14 93.3 11.1 154 11-177 273-430 (458)
108 PRK10803 tol-pal system protei 99.1 4.3E-09 9.2E-14 84.8 14.4 92 63-156 156-253 (263)
109 PF14559 TPR_19: Tetratricopep 99.1 4.7E-10 1E-14 71.4 6.8 64 63-127 4-67 (68)
110 KOG2002 TPR-containing nuclear 99.1 3.2E-10 6.9E-15 102.1 7.7 154 8-180 211-368 (1018)
111 PRK10153 DNA-binding transcrip 99.1 1.3E-09 2.8E-14 95.5 11.0 132 10-156 356-489 (517)
112 PLN03098 LPA1 LOW PSII ACCUMUL 99.1 1.4E-09 2.9E-14 92.2 10.6 71 78-150 69-142 (453)
113 KOG1174 Anaphase-promoting com 99.1 2.4E-10 5.3E-15 95.0 6.0 165 1-168 339-519 (564)
114 KOG0495 HAT repeat protein [RN 99.0 2.4E-09 5.2E-14 93.5 11.7 158 1-180 690-877 (913)
115 KOG0624 dsRNA-activated protei 99.0 1.2E-09 2.6E-14 89.2 9.1 175 3-179 45-248 (504)
116 KOG1840 Kinesin light chain [C 99.0 3.1E-10 6.7E-15 98.4 5.9 156 3-180 206-393 (508)
117 COG4783 Putative Zn-dependent 99.0 8.3E-09 1.8E-13 87.4 12.9 124 7-152 317-440 (484)
118 PF12688 TPR_5: Tetratrico pep 99.0 5.6E-09 1.2E-13 74.3 10.1 92 85-178 2-99 (120)
119 PRK10803 tol-pal system protei 99.0 4.9E-09 1.1E-13 84.4 10.8 97 83-180 141-243 (263)
120 PF13371 TPR_9: Tetratricopept 99.0 3.2E-09 7E-14 68.4 7.9 66 61-127 6-71 (73)
121 COG4785 NlpI Lipoprotein NlpI, 99.0 1.9E-09 4.1E-14 83.1 7.7 106 28-155 63-168 (297)
122 KOG1156 N-terminal acetyltrans 99.0 4.8E-09 1.1E-13 91.3 10.9 155 1-177 46-208 (700)
123 PF12688 TPR_5: Tetratrico pep 99.0 2.4E-08 5.3E-13 71.0 12.6 98 30-149 1-104 (120)
124 PRK10747 putative protoheme IX 99.0 3.5E-09 7.5E-14 90.2 9.0 151 5-180 162-354 (398)
125 TIGR00540 hemY_coli hemY prote 98.9 1.2E-08 2.5E-13 87.2 12.2 117 63-181 97-214 (409)
126 PRK14720 transcript cleavage f 98.9 6.4E-09 1.4E-13 95.2 10.7 112 63-179 44-174 (906)
127 KOG0624 dsRNA-activated protei 98.9 5.5E-09 1.2E-13 85.4 9.1 156 3-160 79-263 (504)
128 KOG4648 Uncharacterized conser 98.9 4.1E-09 8.9E-14 86.2 8.2 105 57-163 104-208 (536)
129 KOG0543 FKBP-type peptidyl-pro 98.9 1E-08 2.2E-13 85.3 8.5 130 2-152 214-358 (397)
130 KOG4234 TPR repeat-containing 98.9 4.6E-08 1E-12 74.7 11.1 102 59-162 104-210 (271)
131 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 1.3E-08 2.8E-13 86.4 8.7 72 23-115 68-142 (453)
132 KOG1840 Kinesin light chain [C 98.8 1.1E-08 2.4E-13 88.8 8.4 156 3-180 248-435 (508)
133 PF12569 NARP1: NMDA receptor- 98.8 4.8E-08 1E-12 85.5 12.2 156 4-180 12-254 (517)
134 PRK14720 transcript cleavage f 98.8 1.5E-08 3.3E-13 92.8 9.1 139 5-149 40-178 (906)
135 KOG0495 HAT repeat protein [RN 98.8 9.7E-09 2.1E-13 89.8 6.9 170 9-181 597-784 (913)
136 PRK10866 outer membrane biogen 98.8 1.8E-07 3.8E-12 74.6 12.7 119 61-180 43-201 (243)
137 PF04733 Coatomer_E: Coatomer 98.8 1.4E-08 3E-13 83.0 6.3 116 63-180 144-262 (290)
138 COG4700 Uncharacterized protei 98.8 7.4E-08 1.6E-12 72.9 9.4 153 3-179 63-218 (251)
139 PRK10866 outer membrane biogen 98.8 1.8E-07 3.8E-12 74.6 12.1 151 6-178 42-236 (243)
140 PF09976 TPR_21: Tetratricopep 98.7 6.3E-08 1.4E-12 71.0 8.4 82 63-147 61-145 (145)
141 PF04733 Coatomer_E: Coatomer 98.7 2E-08 4.3E-13 82.0 5.9 131 8-157 143-273 (290)
142 KOG4642 Chaperone-dependent E3 98.7 6.8E-08 1.5E-12 75.4 8.4 90 58-149 18-107 (284)
143 KOG1174 Anaphase-promoting com 98.7 5.9E-08 1.3E-12 81.1 8.6 155 2-179 306-496 (564)
144 KOG1127 TPR repeat-containing 98.7 3.1E-08 6.8E-13 89.9 6.5 81 98-179 575-655 (1238)
145 KOG1128 Uncharacterized conser 98.7 6.3E-08 1.4E-12 85.5 8.2 136 9-166 498-635 (777)
146 PF13424 TPR_12: Tetratricopep 98.7 2.9E-08 6.4E-13 64.8 4.5 67 81-149 2-75 (78)
147 COG4785 NlpI Lipoprotein NlpI, 98.7 2.7E-08 5.8E-13 76.9 4.4 159 29-189 5-169 (297)
148 PF13525 YfiO: Outer membrane 98.6 2.1E-07 4.6E-12 72.2 9.1 117 63-180 18-167 (203)
149 KOG4555 TPR repeat-containing 98.6 6.5E-07 1.4E-11 64.1 10.6 87 63-151 56-146 (175)
150 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 4.3E-07 9.4E-12 76.9 11.2 116 6-146 179-294 (395)
151 COG2956 Predicted N-acetylgluc 98.6 2E-07 4.3E-12 75.8 8.6 168 11-180 50-275 (389)
152 PF13428 TPR_14: Tetratricopep 98.6 1.4E-07 3E-12 55.0 5.3 41 85-126 2-42 (44)
153 PF13525 YfiO: Outer membrane 98.6 2.8E-07 6E-12 71.5 8.5 149 4-173 13-197 (203)
154 COG2956 Predicted N-acetylgluc 98.6 1.2E-07 2.6E-12 77.0 6.5 113 66-180 123-240 (389)
155 COG3071 HemY Uncharacterized e 98.5 7.3E-07 1.6E-11 74.0 10.2 110 64-179 277-386 (400)
156 PF13431 TPR_17: Tetratricopep 98.5 8.9E-08 1.9E-12 52.7 3.3 32 108-140 2-33 (34)
157 KOG4648 Uncharacterized conser 98.5 1.5E-07 3.3E-12 77.2 5.7 106 2-128 103-208 (536)
158 PF13428 TPR_14: Tetratricopep 98.5 2.4E-07 5.2E-12 53.9 5.0 43 119-162 1-43 (44)
159 PLN03218 maturation of RBCL 1; 98.5 1.1E-06 2.3E-11 83.0 12.0 115 62-180 626-745 (1060)
160 PF13512 TPR_18: Tetratricopep 98.5 4.5E-06 9.7E-11 60.7 12.3 93 63-156 23-135 (142)
161 COG1729 Uncharacterized protei 98.5 6.5E-07 1.4E-11 71.3 8.4 92 87-180 144-241 (262)
162 COG1729 Uncharacterized protei 98.5 5E-06 1.1E-10 66.3 13.0 98 61-160 152-255 (262)
163 PF13431 TPR_17: Tetratricopep 98.5 1.8E-07 3.8E-12 51.5 3.4 34 72-106 1-34 (34)
164 KOG4555 TPR repeat-containing 98.5 1E-06 2.2E-11 63.1 8.0 88 91-180 50-141 (175)
165 PLN03077 Protein ECB2; Provisi 98.5 8.4E-07 1.8E-11 82.5 9.2 168 5-180 533-717 (857)
166 PLN03081 pentatricopeptide (PP 98.4 7.8E-07 1.7E-11 80.9 7.8 168 5-180 268-452 (697)
167 PLN03218 maturation of RBCL 1; 98.4 3E-06 6.4E-11 80.1 11.7 174 5-181 516-711 (1060)
168 PLN03081 pentatricopeptide (PP 98.4 1E-06 2.2E-11 80.1 8.3 169 5-180 369-554 (697)
169 COG0457 NrfG FOG: TPR repeat [ 98.4 7.8E-06 1.7E-10 60.9 11.7 115 63-179 143-261 (291)
170 KOG4234 TPR repeat-containing 98.4 1E-06 2.2E-11 67.5 6.5 92 87-180 98-194 (271)
171 KOG0376 Serine-threonine phosp 98.4 6.5E-07 1.4E-11 76.1 6.0 112 60-173 14-127 (476)
172 KOG2376 Signal recognition par 98.4 2.5E-06 5.5E-11 74.1 9.5 147 7-179 23-200 (652)
173 KOG4642 Chaperone-dependent E3 98.4 4E-07 8.7E-12 71.2 4.2 88 91-180 17-104 (284)
174 PF13512 TPR_18: Tetratricopep 98.4 4.6E-06 9.9E-11 60.7 9.4 84 84-169 10-99 (142)
175 PLN03077 Protein ECB2; Provisi 98.4 2E-06 4.3E-11 80.0 9.2 128 59-193 533-664 (857)
176 KOG4340 Uncharacterized conser 98.3 8.2E-07 1.8E-11 71.8 5.5 152 7-180 21-204 (459)
177 KOG1127 TPR repeat-containing 98.3 2.9E-06 6.3E-11 77.5 9.3 162 3-166 499-676 (1238)
178 PF06552 TOM20_plant: Plant sp 98.3 5.4E-07 1.2E-11 67.7 3.9 106 12-128 7-123 (186)
179 PF07719 TPR_2: Tetratricopept 98.3 3E-06 6.6E-11 46.0 5.1 33 85-118 2-34 (34)
180 PF00515 TPR_1: Tetratricopept 98.3 2.1E-06 4.5E-11 46.8 4.5 32 85-117 2-33 (34)
181 COG0457 NrfG FOG: TPR repeat [ 98.3 1.2E-05 2.6E-10 59.9 10.1 148 10-179 73-227 (291)
182 KOG2376 Signal recognition par 98.2 4.3E-06 9.3E-11 72.7 7.8 112 63-180 25-136 (652)
183 PF00515 TPR_1: Tetratricopept 98.2 3.8E-06 8.3E-11 45.7 4.2 34 119-153 1-34 (34)
184 KOG2396 HAT (Half-A-TPR) repea 98.2 3.9E-05 8.5E-10 65.8 12.1 93 68-161 89-181 (568)
185 PF07719 TPR_2: Tetratricopept 98.2 5.8E-06 1.3E-10 44.8 4.9 34 119-153 1-34 (34)
186 PF13424 TPR_12: Tetratricopep 98.1 4.9E-07 1.1E-11 58.9 0.2 63 116-179 2-71 (78)
187 PF05843 Suf: Suppressor of fo 98.1 1.4E-05 2.9E-10 65.1 8.3 114 65-179 16-132 (280)
188 PF05843 Suf: Suppressor of fo 98.1 8.7E-06 1.9E-10 66.3 7.1 95 85-180 2-96 (280)
189 KOG3081 Vesicle coat complex C 98.1 5.5E-05 1.2E-09 60.3 11.0 72 100-172 188-259 (299)
190 PF04184 ST7: ST7 protein; In 98.1 3.4E-05 7.5E-10 66.2 10.5 116 64-183 182-324 (539)
191 KOG0545 Aryl-hydrocarbon recep 98.1 6.6E-05 1.4E-09 59.3 10.8 100 57-158 185-302 (329)
192 PF12569 NARP1: NMDA receptor- 98.0 4.1E-05 8.8E-10 67.3 10.0 80 98-178 207-286 (517)
193 KOG0551 Hsp90 co-chaperone CNS 98.0 3E-05 6.6E-10 63.4 8.4 95 57-153 88-186 (390)
194 KOG3081 Vesicle coat complex C 98.0 4.3E-05 9.3E-10 60.9 8.8 133 5-156 146-278 (299)
195 KOG2610 Uncharacterized conser 98.0 5.7E-05 1.2E-09 62.2 9.6 119 59-179 112-234 (491)
196 COG4700 Uncharacterized protei 98.0 9.8E-05 2.1E-09 56.2 10.0 115 63-180 69-186 (251)
197 KOG2053 Mitochondrial inherita 98.0 0.0001 2.2E-09 67.0 11.5 135 8-165 21-155 (932)
198 KOG4340 Uncharacterized conser 98.0 1.5E-05 3.3E-10 64.6 5.7 116 63-180 23-170 (459)
199 KOG3824 Huntingtin interacting 98.0 3.3E-05 7.2E-10 62.9 7.6 72 91-164 123-194 (472)
200 KOG1130 Predicted G-alpha GTPa 97.9 1.2E-06 2.5E-11 73.6 -1.6 123 55-179 200-340 (639)
201 KOG1308 Hsp70-interacting prot 97.9 4.2E-06 9.1E-11 68.6 1.2 90 61-152 125-214 (377)
202 PF10300 DUF3808: Protein of u 97.9 0.00011 2.4E-09 64.0 9.9 119 63-183 246-376 (468)
203 PF14938 SNAP: Soluble NSF att 97.9 1.2E-05 2.7E-10 65.3 3.5 116 63-180 48-181 (282)
204 KOG3785 Uncharacterized conser 97.9 0.00019 4.2E-09 59.5 10.4 109 63-173 70-204 (557)
205 COG3071 HemY Uncharacterized e 97.9 0.00025 5.5E-09 59.2 11.1 56 138-193 312-367 (400)
206 KOG2053 Mitochondrial inherita 97.8 0.00021 4.5E-09 65.0 11.0 108 63-173 22-129 (932)
207 KOG1130 Predicted G-alpha GTPa 97.8 7.7E-05 1.7E-09 62.9 7.7 172 3-179 102-300 (639)
208 KOG4507 Uncharacterized conser 97.8 0.00016 3.4E-09 63.4 9.6 101 63-165 620-721 (886)
209 KOG1070 rRNA processing protei 97.8 0.0001 2.2E-09 69.7 8.8 123 63-187 1543-1667(1710)
210 PF14938 SNAP: Soluble NSF att 97.8 4.4E-05 9.5E-10 62.1 5.8 115 64-180 88-222 (282)
211 KOG0545 Aryl-hydrocarbon recep 97.8 0.00011 2.4E-09 58.1 7.6 95 84-180 178-290 (329)
212 KOG2796 Uncharacterized conser 97.8 0.0002 4.4E-09 57.2 9.0 101 62-164 224-333 (366)
213 KOG2796 Uncharacterized conser 97.8 0.00014 3.1E-09 58.1 7.8 115 64-180 191-312 (366)
214 PRK04841 transcriptional regul 97.8 0.00018 3.9E-09 67.2 9.8 116 63-180 504-638 (903)
215 KOG1915 Cell cycle control pro 97.7 0.00042 9.1E-09 59.5 10.5 114 63-179 379-496 (677)
216 PF13181 TPR_8: Tetratricopept 97.7 8.3E-05 1.8E-09 40.2 4.3 31 86-117 3-33 (34)
217 COG3118 Thioredoxin domain-con 97.7 0.001 2.2E-08 53.9 12.1 113 61-177 145-259 (304)
218 KOG0376 Serine-threonine phosp 97.7 3E-05 6.5E-10 66.2 3.5 100 8-128 16-115 (476)
219 KOG2471 TPR repeat-containing 97.7 9E-05 2E-09 63.6 6.2 102 63-166 253-381 (696)
220 PF03704 BTAD: Bacterial trans 97.6 0.0021 4.5E-08 46.8 11.5 61 86-148 64-124 (146)
221 KOG3824 Huntingtin interacting 97.6 0.00016 3.4E-09 59.0 5.6 67 61-128 127-193 (472)
222 PF13181 TPR_8: Tetratricopept 97.5 0.00017 3.7E-09 38.9 4.0 33 120-153 2-34 (34)
223 PRK04841 transcriptional regul 97.5 0.00099 2.1E-08 62.3 11.5 118 61-180 463-599 (903)
224 PRK10941 hypothetical protein; 97.5 0.0017 3.7E-08 52.6 11.1 76 86-163 183-258 (269)
225 KOG1308 Hsp70-interacting prot 97.5 2.1E-05 4.5E-10 64.6 0.0 114 67-190 105-218 (377)
226 COG5191 Uncharacterized conser 97.5 0.00019 4.2E-09 58.5 5.4 89 72-161 95-183 (435)
227 COG3914 Spy Predicted O-linked 97.5 0.0045 9.8E-08 54.4 13.4 128 15-163 50-185 (620)
228 KOG1915 Cell cycle control pro 97.4 0.0013 2.7E-08 56.7 9.1 114 64-180 87-200 (677)
229 KOG0530 Protein farnesyltransf 97.4 0.0023 5E-08 51.2 9.9 118 61-179 54-172 (318)
230 PF13281 DUF4071: Domain of un 97.4 0.0086 1.9E-07 50.5 13.9 155 6-180 157-331 (374)
231 PF08424 NRDE-2: NRDE-2, neces 97.3 0.012 2.6E-07 48.9 13.5 95 70-166 5-111 (321)
232 COG4105 ComL DNA uptake lipopr 97.3 0.012 2.7E-07 46.8 12.8 116 63-179 47-192 (254)
233 PF03704 BTAD: Bacterial trans 97.3 0.0029 6.3E-08 46.0 8.8 59 121-180 64-122 (146)
234 KOG0551 Hsp90 co-chaperone CNS 97.2 0.0018 3.9E-08 53.3 8.0 93 85-179 82-178 (390)
235 KOG3785 Uncharacterized conser 97.2 0.0032 7E-08 52.5 9.4 85 60-146 32-117 (557)
236 PF13174 TPR_6: Tetratricopept 97.2 0.00084 1.8E-08 35.7 4.2 30 87-117 3-32 (33)
237 PF14561 TPR_20: Tetratricopep 97.2 0.0012 2.6E-08 44.5 5.7 48 70-118 8-55 (90)
238 KOG0529 Protein geranylgeranyl 97.2 0.0072 1.6E-07 51.1 11.4 102 65-167 90-196 (421)
239 PF13176 TPR_7: Tetratricopept 97.2 0.00086 1.9E-08 37.0 4.1 25 87-112 2-26 (36)
240 KOG1070 rRNA processing protei 97.2 0.0044 9.6E-08 59.2 10.7 141 5-167 1539-1683(1710)
241 COG4976 Predicted methyltransf 97.2 0.00087 1.9E-08 52.6 5.3 57 63-120 8-64 (287)
242 PF14853 Fis1_TPR_C: Fis1 C-te 97.1 0.004 8.6E-08 37.6 6.6 39 87-126 4-42 (53)
243 PF13174 TPR_6: Tetratricopept 97.1 0.0018 3.8E-08 34.4 4.5 33 120-153 1-33 (33)
244 smart00028 TPR Tetratricopepti 97.0 0.0012 2.7E-08 33.7 3.7 30 121-151 3-32 (34)
245 smart00028 TPR Tetratricopepti 97.0 0.0018 3.8E-08 33.1 4.0 33 85-118 2-34 (34)
246 KOG2610 Uncharacterized conser 97.0 0.003 6.5E-08 52.3 6.9 122 56-179 143-272 (491)
247 PRK10941 hypothetical protein; 96.9 0.0052 1.1E-07 49.8 7.8 68 59-127 190-257 (269)
248 COG0790 FOG: TPR repeat, SEL1 96.9 0.046 1E-06 44.3 13.6 98 64-168 127-236 (292)
249 PF10300 DUF3808: Protein of u 96.9 0.0058 1.3E-07 53.4 8.5 119 9-149 246-376 (468)
250 COG4105 ComL DNA uptake lipopr 96.9 0.013 2.8E-07 46.7 9.7 83 83-167 33-121 (254)
251 PF14561 TPR_20: Tetratricopep 96.9 0.034 7.4E-07 37.4 10.5 71 104-175 7-79 (90)
252 PF14853 Fis1_TPR_C: Fis1 C-te 96.9 0.0092 2E-07 36.0 6.8 45 120-165 2-46 (53)
253 PF09613 HrpB1_HrpK: Bacterial 96.8 0.038 8.3E-07 41.1 11.4 100 63-166 23-122 (160)
254 PF13176 TPR_7: Tetratricopept 96.8 0.0021 4.5E-08 35.4 3.6 29 121-150 1-29 (36)
255 KOG1941 Acetylcholine receptor 96.8 0.0045 9.8E-08 51.7 6.9 116 61-178 133-270 (518)
256 PF08424 NRDE-2: NRDE-2, neces 96.8 0.0076 1.7E-07 50.0 8.3 157 15-180 4-180 (321)
257 KOG1310 WD40 repeat protein [G 96.8 0.0076 1.7E-07 52.6 8.0 92 62-154 386-479 (758)
258 COG3118 Thioredoxin domain-con 96.7 0.012 2.6E-07 47.8 8.6 78 64-146 116-194 (304)
259 PF04184 ST7: ST7 protein; In 96.7 0.035 7.5E-07 48.3 11.4 95 63-158 272-384 (539)
260 PF09613 HrpB1_HrpK: Bacterial 96.6 0.17 3.8E-06 37.6 13.6 85 86-172 12-96 (160)
261 COG2976 Uncharacterized protei 96.6 0.022 4.7E-07 43.7 8.8 85 64-151 103-190 (207)
262 KOG1585 Protein required for f 96.6 0.017 3.7E-07 45.9 8.5 115 63-179 44-175 (308)
263 PF04781 DUF627: Protein of un 96.6 0.03 6.5E-07 39.0 8.8 87 62-150 8-108 (111)
264 PF13281 DUF4071: Domain of un 96.5 0.038 8.3E-07 46.7 10.4 109 64-174 155-279 (374)
265 KOG0529 Protein geranylgeranyl 96.4 0.041 8.9E-07 46.6 10.2 104 67-170 46-161 (421)
266 KOG2396 HAT (Half-A-TPR) repea 96.4 0.018 3.8E-07 50.0 8.0 64 64-127 119-182 (568)
267 KOG1586 Protein required for f 96.3 0.063 1.4E-06 42.5 10.0 109 59-168 82-209 (288)
268 KOG1586 Protein required for f 96.3 0.047 1E-06 43.2 9.2 93 86-180 76-180 (288)
269 COG4976 Predicted methyltransf 96.2 0.0071 1.5E-07 47.6 4.3 56 98-154 8-63 (287)
270 PF02259 FAT: FAT domain; Int 96.2 0.12 2.6E-06 42.7 12.0 111 61-172 157-310 (352)
271 KOG0530 Protein farnesyltransf 96.1 0.03 6.6E-07 44.9 7.1 112 15-147 62-174 (318)
272 KOG1550 Extracellular protein 96.0 0.092 2E-06 46.9 10.7 99 63-167 262-373 (552)
273 PF13374 TPR_10: Tetratricopep 95.9 0.025 5.4E-07 31.4 4.7 28 86-114 4-31 (42)
274 COG3914 Spy Predicted O-linked 95.9 0.043 9.4E-07 48.4 8.1 115 64-179 45-167 (620)
275 COG2912 Uncharacterized conser 95.9 0.095 2.1E-06 42.2 9.3 73 89-163 186-258 (269)
276 COG0790 FOG: TPR repeat, SEL1 95.8 0.31 6.6E-06 39.5 12.5 111 64-179 91-216 (292)
277 KOG2047 mRNA splicing factor [ 95.8 0.3 6.5E-06 44.0 12.7 114 63-179 400-536 (835)
278 KOG2471 TPR repeat-containing 95.7 0.056 1.2E-06 47.0 7.7 79 51-130 284-380 (696)
279 PF09986 DUF2225: Uncharacteri 95.6 0.62 1.3E-05 36.5 13.0 104 59-164 86-210 (214)
280 PF11207 DUF2989: Protein of u 95.6 0.34 7.4E-06 37.4 11.0 79 93-174 115-198 (203)
281 PF07720 TPR_3: Tetratricopept 95.6 0.059 1.3E-06 29.7 5.1 33 85-118 2-36 (36)
282 KOG3364 Membrane protein invol 95.6 0.59 1.3E-05 33.9 11.3 83 84-167 32-118 (149)
283 KOG2300 Uncharacterized conser 95.5 0.19 4.2E-06 43.7 10.4 112 65-176 24-149 (629)
284 PF13374 TPR_10: Tetratricopep 95.5 0.036 7.7E-07 30.7 4.2 31 119-150 2-32 (42)
285 PF04781 DUF627: Protein of un 95.5 0.084 1.8E-06 36.8 6.7 82 91-173 3-97 (111)
286 KOG1258 mRNA processing protei 95.5 0.4 8.6E-06 42.6 12.3 110 63-174 310-420 (577)
287 TIGR02561 HrpB1_HrpK type III 95.4 0.4 8.6E-06 35.3 10.2 86 63-151 23-108 (153)
288 COG3898 Uncharacterized membra 95.3 0.24 5.3E-06 42.1 10.0 116 63-179 167-288 (531)
289 COG5191 Uncharacterized conser 95.3 0.0082 1.8E-07 49.3 1.3 64 64-127 121-184 (435)
290 KOG2047 mRNA splicing factor [ 95.2 0.32 7E-06 43.8 11.0 117 63-180 490-612 (835)
291 KOG1941 Acetylcholine receptor 95.2 0.088 1.9E-06 44.3 7.2 113 65-179 98-231 (518)
292 KOG1310 WD40 repeat protein [G 95.2 0.047 1E-06 47.9 5.6 81 99-179 388-470 (758)
293 PF10373 EST1_DNA_bind: Est1 D 95.1 0.12 2.5E-06 41.4 7.6 62 69-131 1-62 (278)
294 PF10373 EST1_DNA_bind: Est1 D 95.0 0.11 2.4E-06 41.6 7.3 62 104-166 1-62 (278)
295 COG2976 Uncharacterized protei 94.9 0.34 7.4E-06 37.3 9.0 87 89-180 94-185 (207)
296 KOG1585 Protein required for f 94.8 0.33 7.2E-06 38.8 9.0 115 64-180 85-216 (308)
297 smart00386 HAT HAT (Half-A-TPR 94.7 0.12 2.5E-06 26.8 4.6 24 102-125 4-27 (33)
298 COG2912 Uncharacterized conser 94.7 0.083 1.8E-06 42.6 5.6 69 59-128 190-258 (269)
299 KOG1550 Extracellular protein 94.6 0.89 1.9E-05 40.7 12.5 102 65-173 308-416 (552)
300 PF11207 DUF2989: Protein of u 94.6 0.25 5.4E-06 38.2 7.7 71 67-140 123-198 (203)
301 PF07079 DUF1347: Protein of u 94.6 0.58 1.3E-05 40.5 10.5 114 64-182 394-523 (549)
302 COG3898 Uncharacterized membra 94.5 0.93 2E-05 38.7 11.3 104 64-174 243-349 (531)
303 PF08631 SPO22: Meiosis protei 94.3 0.83 1.8E-05 37.1 10.7 117 63-180 6-147 (278)
304 KOG4507 Uncharacterized conser 94.2 0.097 2.1E-06 46.6 5.2 108 70-179 199-308 (886)
305 smart00386 HAT HAT (Half-A-TPR 94.1 0.18 3.8E-06 26.0 4.5 30 64-93 1-30 (33)
306 TIGR02561 HrpB1_HrpK type III 94.1 1.7 3.7E-05 32.0 11.6 74 98-172 23-96 (153)
307 PF07720 TPR_3: Tetratricopept 94.1 0.22 4.7E-06 27.4 4.8 34 119-153 1-36 (36)
308 KOG1914 mRNA cleavage and poly 94.1 0.47 1E-05 41.9 9.0 74 74-150 10-83 (656)
309 PF12968 DUF3856: Domain of Un 93.6 1.8 4E-05 30.8 10.4 83 64-148 23-128 (144)
310 PF07079 DUF1347: Protein of u 93.6 0.41 8.8E-06 41.4 7.8 79 83-168 459-544 (549)
311 KOG3364 Membrane protein invol 93.6 0.49 1.1E-05 34.3 7.0 67 63-130 48-116 (149)
312 PF02259 FAT: FAT domain; Int 93.5 1.7 3.7E-05 35.7 11.5 89 63-152 197-341 (352)
313 PRK15180 Vi polysaccharide bio 93.4 0.22 4.8E-06 43.5 5.9 89 64-154 337-425 (831)
314 COG3629 DnrI DNA-binding trans 93.2 3.1 6.7E-05 33.9 12.0 95 64-163 135-236 (280)
315 PF12862 Apc5: Anaphase-promot 93.0 0.52 1.1E-05 31.6 6.4 51 63-114 11-70 (94)
316 PF12862 Apc5: Anaphase-promot 93.0 1.3 2.8E-05 29.6 8.3 52 98-150 11-71 (94)
317 COG4649 Uncharacterized protei 92.8 1.2 2.7E-05 33.9 8.4 100 63-166 107-212 (221)
318 PF07721 TPR_4: Tetratricopept 92.8 0.17 3.8E-06 25.4 2.8 21 87-108 4-24 (26)
319 PF10516 SHNi-TPR: SHNi-TPR; 92.6 0.26 5.7E-06 27.4 3.6 28 86-114 3-30 (38)
320 PF15015 NYD-SP12_N: Spermatog 92.5 0.26 5.6E-06 42.3 5.0 52 124-176 233-284 (569)
321 KOG4814 Uncharacterized conser 92.4 0.68 1.5E-05 41.7 7.7 93 85-180 356-454 (872)
322 PF04910 Tcf25: Transcriptiona 92.4 0.96 2.1E-05 38.3 8.4 90 63-152 116-225 (360)
323 PF10602 RPN7: 26S proteasome 92.4 1.5 3.3E-05 33.2 8.7 95 84-180 36-139 (177)
324 KOG4814 Uncharacterized conser 91.8 2 4.4E-05 38.9 9.9 87 62-150 366-458 (872)
325 KOG3617 WD40 and TPR repeat-co 91.6 0.39 8.4E-06 44.6 5.4 102 63-179 871-992 (1416)
326 PF07721 TPR_4: Tetratricopept 91.5 0.26 5.7E-06 24.7 2.6 24 120-144 2-25 (26)
327 PF09986 DUF2225: Uncharacteri 91.3 1.6 3.4E-05 34.2 8.0 63 66-129 141-210 (214)
328 KOG0546 HSP90 co-chaperone CPR 91.1 0.24 5.2E-06 41.4 3.3 110 60-171 232-360 (372)
329 KOG1914 mRNA cleavage and poly 90.9 2.9 6.4E-05 37.1 9.8 113 66-180 347-461 (656)
330 PF04910 Tcf25: Transcriptiona 90.8 6.9 0.00015 33.1 11.9 95 75-171 31-156 (360)
331 PF10579 Rapsyn_N: Rapsyn N-te 90.4 3.5 7.6E-05 26.9 7.7 54 90-145 12-68 (80)
332 PF12968 DUF3856: Domain of Un 90.4 1.5 3.3E-05 31.2 6.4 81 98-179 22-125 (144)
333 KOG1258 mRNA processing protei 90.4 3.5 7.5E-05 36.8 10.0 114 65-179 60-176 (577)
334 COG3947 Response regulator con 89.9 1.7 3.7E-05 35.7 7.1 47 98-145 292-338 (361)
335 PRK13184 pknD serine/threonine 89.7 3.7 8E-05 39.1 10.2 135 9-158 488-629 (932)
336 KOG4014 Uncharacterized conser 89.7 2.8 6.1E-05 32.2 7.7 97 64-166 49-156 (248)
337 PRK13184 pknD serine/threonine 89.2 3.6 7.8E-05 39.2 9.7 96 59-156 484-588 (932)
338 KOG3807 Predicted membrane pro 88.7 1.5 3.2E-05 36.9 6.1 102 64-180 198-301 (556)
339 PF10345 Cohesin_load: Cohesin 87.9 6.4 0.00014 35.7 10.3 113 66-180 37-165 (608)
340 KOG4014 Uncharacterized conser 87.9 11 0.00023 29.1 11.8 99 63-167 86-213 (248)
341 COG3629 DnrI DNA-binding trans 87.7 2.5 5.4E-05 34.5 6.8 51 63-114 166-216 (280)
342 PF10579 Rapsyn_N: Rapsyn N-te 87.2 1.7 3.6E-05 28.4 4.5 52 123-175 10-64 (80)
343 PF14863 Alkyl_sulf_dimr: Alky 86.8 4.7 0.0001 29.4 7.2 50 84-134 70-119 (141)
344 PF10516 SHNi-TPR: SHNi-TPR; 86.6 1.7 3.7E-05 24.2 3.7 30 120-150 2-31 (38)
345 PF11846 DUF3366: Domain of un 86.6 6.4 0.00014 29.9 8.3 45 105-151 131-175 (193)
346 COG4649 Uncharacterized protei 84.6 10 0.00022 29.0 8.1 121 59-182 67-195 (221)
347 PF12854 PPR_1: PPR repeat 84.6 0.62 1.3E-05 25.0 1.3 26 154-179 7-32 (34)
348 COG4455 ImpE Protein of avirul 84.5 3.4 7.3E-05 32.7 5.7 58 62-120 13-70 (273)
349 PF01239 PPTA: Protein prenylt 84.3 4.2 9.1E-05 21.0 4.5 26 140-165 3-28 (31)
350 COG3947 Response regulator con 84.0 1.8 3.9E-05 35.6 4.2 52 60-112 289-340 (361)
351 PF08631 SPO22: Meiosis protei 83.7 9.1 0.0002 31.0 8.4 76 98-173 6-103 (278)
352 PRK15180 Vi polysaccharide bio 83.5 5.9 0.00013 35.0 7.3 108 63-173 302-410 (831)
353 PF13226 DUF4034: Domain of un 83.4 20 0.00044 29.2 10.1 110 63-172 13-151 (277)
354 PF10602 RPN7: 26S proteasome 83.3 17 0.00037 27.4 10.3 86 63-150 49-143 (177)
355 KOG2041 WD40 repeat protein [G 82.7 4.8 0.0001 37.1 6.7 32 149-180 847-878 (1189)
356 PF11846 DUF3366: Domain of un 82.3 7.9 0.00017 29.4 7.1 47 68-116 129-175 (193)
357 KOG0128 RNA-binding protein SA 81.8 35 0.00075 32.1 11.8 104 64-169 93-198 (881)
358 PF02184 HAT: HAT (Half-A-TPR) 81.3 4.3 9.3E-05 21.7 3.7 26 136-162 3-28 (32)
359 PF00244 14-3-3: 14-3-3 protei 81.3 8.4 0.00018 30.6 7.1 47 67-113 143-197 (236)
360 COG4455 ImpE Protein of avirul 81.3 13 0.00029 29.5 7.9 69 93-163 10-81 (273)
361 COG4941 Predicted RNA polymera 81.1 18 0.00039 30.5 9.0 168 10-179 210-390 (415)
362 PF14863 Alkyl_sulf_dimr: Alky 81.1 4.7 0.0001 29.4 5.2 53 119-172 70-122 (141)
363 TIGR03504 FimV_Cterm FimV C-te 81.1 3.7 8.1E-05 23.6 3.7 25 123-148 3-27 (44)
364 PF15015 NYD-SP12_N: Spermatog 80.4 10 0.00023 32.9 7.6 104 61-166 187-311 (569)
365 smart00299 CLH Clathrin heavy 79.9 19 0.00041 25.5 9.5 45 63-109 20-64 (140)
366 TIGR03504 FimV_Cterm FimV C-te 79.0 5.4 0.00012 22.9 4.0 25 88-113 3-27 (44)
367 smart00101 14_3_3 14-3-3 homol 78.9 11 0.00024 30.1 7.0 24 89-112 175-198 (244)
368 smart00671 SEL1 Sel1-like repe 78.7 4.7 0.0001 21.0 3.6 14 135-148 20-33 (36)
369 PF00244 14-3-3: 14-3-3 protei 78.3 12 0.00026 29.7 7.1 47 102-148 143-197 (236)
370 PF04053 Coatomer_WDAD: Coatom 77.8 20 0.00043 31.3 8.8 32 81-113 344-375 (443)
371 COG5107 RNA14 Pre-mRNA 3'-end 77.8 26 0.00056 30.9 9.2 103 66-170 413-518 (660)
372 smart00101 14_3_3 14-3-3 homol 77.8 13 0.00029 29.7 7.2 48 101-148 144-199 (244)
373 PF09205 DUF1955: Domain of un 77.6 25 0.00054 25.7 8.3 80 64-149 70-149 (161)
374 KOG3783 Uncharacterized conser 77.4 24 0.00052 31.4 9.1 72 80-152 444-523 (546)
375 PF10345 Cohesin_load: Cohesin 77.4 39 0.00085 30.7 11.0 74 98-172 374-467 (608)
376 PF08238 Sel1: Sel1 repeat; I 77.4 7.5 0.00016 20.7 4.2 13 136-148 24-36 (39)
377 KOG2300 Uncharacterized conser 76.4 56 0.0012 29.1 11.1 113 60-179 377-510 (629)
378 COG4941 Predicted RNA polymera 75.7 34 0.00074 28.9 9.1 110 64-174 210-349 (415)
379 KOG0546 HSP90 co-chaperone CPR 75.4 3.8 8.2E-05 34.4 3.6 67 64-131 289-355 (372)
380 KOG1464 COP9 signalosome, subu 75.3 27 0.00058 28.8 8.2 109 64-174 41-165 (440)
381 COG5536 BET4 Protein prenyltra 74.8 11 0.00023 31.0 5.8 97 66-163 90-193 (328)
382 COG5107 RNA14 Pre-mRNA 3'-end 74.7 48 0.001 29.3 10.0 93 72-167 30-122 (660)
383 cd02682 MIT_AAA_Arch MIT: doma 74.4 18 0.00038 23.4 5.8 26 101-126 29-54 (75)
384 KOG0890 Protein kinase of the 74.1 34 0.00075 35.8 10.2 102 63-167 1683-1802(2382)
385 COG2909 MalT ATP-dependent tra 74.1 67 0.0015 30.5 11.4 104 63-168 428-551 (894)
386 PF01239 PPTA: Protein prenylt 74.1 10 0.00022 19.5 4.9 25 105-129 3-27 (31)
387 PF04053 Coatomer_WDAD: Coatom 73.4 61 0.0013 28.3 10.7 80 64-146 275-373 (443)
388 PRK11619 lytic murein transgly 72.9 44 0.00096 30.7 10.1 114 64-180 255-372 (644)
389 cd02680 MIT_calpain7_2 MIT: do 72.1 11 0.00023 24.4 4.4 17 98-114 19-35 (75)
390 smart00299 CLH Clathrin heavy 71.5 27 0.00058 24.7 7.0 76 98-176 20-104 (140)
391 cd02679 MIT_spastin MIT: domai 70.6 11 0.00024 24.5 4.3 34 64-113 3-36 (79)
392 PF04190 DUF410: Protein of un 70.6 42 0.00091 27.0 8.6 64 116-179 46-115 (260)
393 KOG0985 Vesicle coat protein c 70.5 58 0.0013 31.8 10.2 83 82-172 1102-1184(1666)
394 KOG0128 RNA-binding protein SA 70.0 32 0.0007 32.3 8.4 87 63-150 126-220 (881)
395 PF04190 DUF410: Protein of un 69.7 57 0.0012 26.2 9.2 92 77-168 133-242 (260)
396 KOG3617 WD40 and TPR repeat-co 69.6 17 0.00037 34.4 6.5 94 71-179 790-883 (1416)
397 PRK15490 Vi polysaccharide bio 69.0 34 0.00074 30.9 8.3 76 65-144 23-98 (578)
398 PF01535 PPR: PPR repeat; Int 68.9 10 0.00022 18.8 3.2 24 89-113 5-28 (31)
399 KOG0985 Vesicle coat protein c 68.4 22 0.00048 34.5 7.1 66 98-174 1088-1153(1666)
400 KOG2422 Uncharacterized conser 67.2 77 0.0017 28.8 9.8 91 61-152 353-451 (665)
401 PF04090 RNA_pol_I_TF: RNA pol 67.0 57 0.0012 25.2 8.9 55 61-115 52-106 (199)
402 PF09205 DUF1955: Domain of un 66.8 43 0.00093 24.5 6.9 51 63-114 99-149 (161)
403 KOG3783 Uncharacterized conser 66.6 33 0.00072 30.6 7.5 83 67-151 250-334 (546)
404 COG5536 BET4 Protein prenyltra 66.5 28 0.00061 28.6 6.5 97 67-164 49-154 (328)
405 KOG1839 Uncharacterized protei 65.5 18 0.00038 35.5 6.1 109 63-173 986-1118(1236)
406 KOG4279 Serine/threonine prote 65.0 30 0.00064 32.5 7.1 107 58-165 295-411 (1226)
407 PRK15490 Vi polysaccharide bio 65.0 80 0.0017 28.7 9.7 43 64-109 56-98 (578)
408 PF09797 NatB_MDM20: N-acetylt 64.8 36 0.00079 28.6 7.5 46 64-110 197-242 (365)
409 PF09670 Cas_Cas02710: CRISPR- 63.9 66 0.0014 27.4 8.8 53 61-114 142-198 (379)
410 PF11817 Foie-gras_1: Foie gra 63.8 72 0.0016 25.3 9.0 51 121-172 180-236 (247)
411 PHA02537 M terminase endonucle 63.8 16 0.00034 29.0 4.7 92 59-152 92-210 (230)
412 cd02677 MIT_SNX15 MIT: domain 63.6 37 0.00079 21.8 7.6 14 67-80 4-17 (75)
413 PF09797 NatB_MDM20: N-acetylt 63.4 23 0.00049 29.8 6.0 45 100-145 198-242 (365)
414 PF13041 PPR_2: PPR repeat fam 62.6 27 0.00058 19.9 6.0 21 93-114 12-32 (50)
415 COG4259 Uncharacterized protei 62.4 49 0.0011 22.8 6.4 54 70-124 57-111 (121)
416 TIGR02996 rpt_mate_G_obs repea 61.0 17 0.00038 20.6 3.2 26 108-133 5-30 (42)
417 PF14852 Fis1_TPR_N: Fis1 N-te 60.9 10 0.00022 20.6 2.3 30 120-149 2-33 (35)
418 KOG0890 Protein kinase of the 60.6 45 0.00097 35.1 8.0 105 62-172 1461-1566(2382)
419 PF08311 Mad3_BUB1_I: Mad3/BUB 60.4 58 0.0012 23.0 7.1 75 65-147 41-126 (126)
420 KOG0276 Vesicle coat complex C 60.3 71 0.0015 29.3 8.4 66 72-148 629-694 (794)
421 KOG4279 Serine/threonine prote 59.0 20 0.00044 33.5 5.0 87 63-150 256-351 (1226)
422 COG3107 LppC Putative lipoprot 58.7 1.4E+02 0.003 26.9 10.3 129 34-169 18-149 (604)
423 cd02682 MIT_AAA_Arch MIT: doma 58.6 40 0.00087 21.7 5.1 23 136-158 29-51 (75)
424 PF04212 MIT: MIT (microtubule 58.5 32 0.00069 21.3 4.7 16 98-113 18-33 (69)
425 PF11817 Foie-gras_1: Foie gra 58.0 35 0.00076 27.1 5.9 77 65-143 153-241 (247)
426 PF12583 TPPII_N: Tripeptidyl 55.6 24 0.00052 25.4 4.0 24 66-89 92-115 (139)
427 smart00745 MIT Microtubule Int 55.4 30 0.00065 21.9 4.3 15 66-80 5-19 (77)
428 cd02684 MIT_2 MIT: domain cont 55.1 35 0.00077 21.8 4.5 16 98-113 19-34 (75)
429 KOG2758 Translation initiation 54.5 72 0.0016 26.9 7.1 79 68-149 113-196 (432)
430 KOG1839 Uncharacterized protei 54.5 20 0.00042 35.2 4.4 116 63-180 945-1083(1236)
431 KOG3616 Selective LIM binding 54.1 46 0.00099 31.4 6.4 73 97-180 777-850 (1636)
432 TIGR02996 rpt_mate_G_obs repea 53.9 40 0.00086 19.2 4.2 33 71-104 3-35 (42)
433 cd02656 MIT MIT: domain contai 52.8 36 0.00078 21.5 4.3 16 98-113 19-34 (75)
434 KOG4151 Myosin assembly protei 52.6 49 0.0011 30.8 6.4 102 61-163 64-170 (748)
435 KOG0889 Histone acetyltransfer 51.9 31 0.00067 37.5 5.5 97 64-163 2826-2929(3550)
436 PF12753 Nro1: Nuclear pore co 51.7 26 0.00056 30.1 4.3 46 101-148 334-390 (404)
437 KOG2114 Vacuolar assembly/sort 51.2 59 0.0013 30.7 6.7 84 84-175 368-452 (933)
438 cd00280 TRFH Telomeric Repeat 49.1 26 0.00057 26.9 3.5 36 93-130 120-155 (200)
439 PF10255 Paf67: RNA polymerase 48.9 49 0.0011 28.6 5.6 116 63-179 135-266 (404)
440 PF13226 DUF4034: Domain of un 48.1 1.3E+02 0.0027 24.7 7.6 65 68-133 61-147 (277)
441 TIGR00756 PPR pentatricopeptid 48.1 36 0.00077 16.9 4.0 16 98-113 13-28 (35)
442 PF10255 Paf67: RNA polymerase 47.6 34 0.00075 29.5 4.5 31 116-147 161-191 (404)
443 cd02681 MIT_calpain7_1 MIT: do 47.5 56 0.0012 21.1 4.5 17 97-113 18-34 (76)
444 KOG2581 26S proteasome regulat 44.7 71 0.0015 27.8 5.8 75 98-173 222-306 (493)
445 PF08311 Mad3_BUB1_I: Mad3/BUB 44.4 1.1E+02 0.0024 21.5 7.7 109 68-178 3-123 (126)
446 COG2909 MalT ATP-dependent tra 43.4 2.5E+02 0.0053 27.0 9.4 93 84-178 415-521 (894)
447 KOG0276 Vesicle coat complex C 42.0 2.5E+02 0.0054 25.9 8.9 48 61-114 648-695 (794)
448 KOG4521 Nuclear pore complex, 41.8 2.2E+02 0.0047 28.4 8.9 17 63-79 933-949 (1480)
449 PF09670 Cas_Cas02710: CRISPR- 41.2 2.3E+02 0.0049 24.2 9.5 59 89-149 136-198 (379)
450 PF02064 MAS20: MAS20 protein 40.4 76 0.0017 22.5 4.6 29 125-154 69-97 (121)
451 PF14929 TAF1_subA: TAF RNA Po 39.2 3E+02 0.0064 25.0 10.0 136 5-167 318-468 (547)
452 KOG4521 Nuclear pore complex, 38.3 1.8E+02 0.0039 29.0 7.8 141 1-172 925-1072(1480)
453 TIGR00985 3a0801s04tom mitocho 37.4 89 0.0019 23.0 4.7 34 124-157 95-128 (148)
454 PF02064 MAS20: MAS20 protein 36.0 1.1E+02 0.0024 21.6 4.9 33 89-122 68-100 (121)
455 KOG4563 Cell cycle-regulated h 36.0 1.1E+02 0.0023 26.2 5.5 50 88-139 45-102 (400)
456 PF07219 HemY_N: HemY protein 35.7 1.4E+02 0.0031 20.3 6.7 44 125-169 65-108 (108)
457 cd02678 MIT_VPS4 MIT: domain c 35.5 1.1E+02 0.0024 19.3 4.5 16 98-113 19-34 (75)
458 KOG1464 COP9 signalosome, subu 34.9 1.6E+02 0.0035 24.4 6.2 50 98-148 40-93 (440)
459 PF12753 Nro1: Nuclear pore co 34.2 68 0.0015 27.6 4.1 33 64-99 332-364 (404)
460 PF12583 TPPII_N: Tripeptidyl 34.1 1.3E+02 0.0029 21.7 5.0 32 98-129 89-120 (139)
461 KOG2581 26S proteasome regulat 33.7 58 0.0013 28.3 3.6 55 64-119 223-281 (493)
462 PF13812 PPR_3: Pentatricopept 32.0 73 0.0016 15.8 4.4 24 89-113 6-29 (34)
463 KOG3807 Predicted membrane pro 30.1 3.5E+02 0.0077 23.1 10.1 71 89-161 280-353 (556)
464 PRK15326 type III secretion sy 29.4 1.7E+02 0.0036 19.2 7.2 29 98-126 20-48 (80)
465 KOG2422 Uncharacterized conser 28.8 4.6E+02 0.01 24.1 12.2 103 63-167 251-390 (665)
466 PHA02537 M terminase endonucle 28.3 97 0.0021 24.6 3.9 21 98-118 191-211 (230)
467 COG4259 Uncharacterized protei 27.8 2.1E+02 0.0046 19.8 6.3 52 105-157 57-109 (121)
468 PF06957 COPI_C: Coatomer (COP 27.5 4.2E+02 0.0091 23.2 7.9 45 113-158 293-338 (422)
469 TIGR02710 CRISPR-associated pr 25.6 3.8E+02 0.0081 23.1 7.2 8 166-173 258-265 (380)
470 KOG0292 Vesicle coat complex C 25.5 1.1E+02 0.0023 29.5 4.2 21 3-23 998-1018(1202)
471 COG2015 Alkyl sulfatase and re 25.0 2.5E+02 0.0055 25.2 6.1 46 88-134 456-501 (655)
472 PF10952 DUF2753: Protein of u 24.2 2.8E+02 0.006 20.0 6.8 57 89-147 6-77 (140)
473 PF15297 CKAP2_C: Cytoskeleton 23.6 3.3E+02 0.0071 23.1 6.3 49 103-152 121-172 (353)
474 KOG0889 Histone acetyltransfer 23.4 8.4E+02 0.018 27.7 10.2 102 65-167 2734-2859(3550)
475 KOG0686 COP9 signalosome, subu 23.3 3.7E+02 0.0079 23.6 6.6 83 61-146 161-255 (466)
476 PF04348 LppC: LppC putative l 23.1 28 0.0006 31.2 0.0 111 69-180 8-124 (536)
477 KOG4563 Cell cycle-regulated h 22.7 1.3E+02 0.0029 25.7 3.9 52 123-175 45-104 (400)
478 KOG4151 Myosin assembly protei 22.4 1.5E+02 0.0032 27.8 4.4 62 63-125 106-167 (748)
479 KOG4459 Membrane-associated pr 22.2 1.1E+02 0.0023 27.0 3.3 56 124-180 138-193 (471)
480 KOG0567 HEAT repeat-containing 22.0 4.5E+02 0.0097 21.6 9.3 87 79-170 164-250 (289)
481 PF07219 HemY_N: HemY protein 21.8 2.7E+02 0.0058 18.9 6.8 34 90-125 65-98 (108)
482 cd02683 MIT_1 MIT: domain cont 21.6 2.3E+02 0.005 18.1 8.3 14 67-80 4-17 (77)
483 KOG1538 Uncharacterized conser 21.1 1E+02 0.0022 28.7 3.0 106 61-179 714-829 (1081)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=8.7e-22 Score=168.73 Aligned_cols=175 Identities=17% Similarity=0.132 Sum_probs=100.2
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------------CCCCCCCCCcccCCCCCHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------------GTGGGGSGFYPAGSGGDSQG 68 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------------~~~~~~~~~~~~~~~g~~~~ 68 (197)
|.++...|....||.-|-++...+|+=+..|+..|.++...+.++. -+...++.+..+...|..+-
T Consensus 225 g~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldl 304 (966)
T KOG4626|consen 225 GCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDL 304 (966)
T ss_pred chHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHH
Confidence 3444444555555555555555555555555555544444433322 01122223334444566666
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199 69 VEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVH 148 (197)
Q Consensus 69 A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~ 148 (197)
|+..|++++.++|+++.++.|+|+.+.. .|+..+|+.+|.++|.+.|+.+++++|+|.++.+++. +++|...|+++++
T Consensus 305 AI~~Ykral~~~P~F~~Ay~NlanALkd-~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~-~e~A~~ly~~al~ 382 (966)
T KOG4626|consen 305 AIDTYKRALELQPNFPDAYNNLANALKD-KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK-IEEATRLYLKALE 382 (966)
T ss_pred HHHHHHHHHhcCCCchHHHhHHHHHHHh-ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc-chHHHHHHHHHHh
Confidence 6666666666666666666666666655 6666666666666666666666666666666666554 5666666666666
Q ss_pred hCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 149 ASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 149 ~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
..|+-..++.|+|.+|.++|++++|+..|++
T Consensus 383 v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 383 VFPEFAAAHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred hChhhhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence 6666666666666666666666666555555
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=4.2e-22 Score=170.62 Aligned_cols=175 Identities=14% Similarity=0.070 Sum_probs=120.7
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCC-------C-CCCCCCCCCCc------ccCCCCCHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGR-------G-GGTGGGGSGFY------PAGSGGDSQG 68 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~-------~-~~~~~~~~~~~------~~~~~g~~~~ 68 (197)
|+.+..+||..||-.+|.++++..|.=+-.|-..|-.+..-|.. . -...+|.+.++ .+...+.+++
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchH
Confidence 67788888888888888888888886666666655555444321 1 13445554433 3333466666
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199 69 VEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVH 148 (197)
Q Consensus 69 A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~ 148 (197)
|+.+|++|+.+.|+++.++-|+|.+|+. +|+.+-|+.+|++++++.|+.+++++|+|.++-..|. ..+|.++|.++|.
T Consensus 271 Avs~Y~rAl~lrpn~A~a~gNla~iYye-qG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~-V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 271 AVSCYLRALNLRPNHAVAHGNLACIYYE-QGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGS-VTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHhcCCcchhhccceEEEEec-cccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccc-hHHHHHHHHHHHH
Confidence 6666666666666666666666655555 6777777777777777777777777777777777663 7777777777777
Q ss_pred hCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 149 ASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 149 ~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
+.|+++++.+|+|.++.++|++++|...|..
T Consensus 349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~ 379 (966)
T KOG4626|consen 349 LCPNHADAMNNLGNIYREQGKIEEATRLYLK 379 (966)
T ss_pred hCCccHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 7777777777777777777777777666655
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=9e-20 Score=162.62 Aligned_cols=156 Identities=19% Similarity=0.178 Sum_probs=142.7
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|.++-..|++.+|+..|..+++.+|..+..++..|..+.. .|++++|+..|+++++++|+
T Consensus 338 g~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~--------------------~g~~~eA~~~~~~al~~~p~ 397 (615)
T TIGR00990 338 GTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLE--------------------LGDPDKAEEDFDKALKLNSE 397 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHHhCCC
Confidence 5566677888888888888888888888888888877665 49999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG 162 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 162 (197)
++.+|+++|.+++. .|++++|+.+|+++++++|++..++.++|.+++.+|+ +++|+..|+++++..|+++.++..+|.
T Consensus 398 ~~~~~~~lg~~~~~-~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~~~P~~~~~~~~lg~ 475 (615)
T TIGR00990 398 DPDIYYHRAQLHFI-KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS-IASSMATFRRCKKNFPEAPDVYNYYGE 475 (615)
T ss_pred CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 99999999988887 9999999999999999999999999999999999885 999999999999999999999999999
Q ss_pred HHHHcCCccccccCCCcc
Q 029199 163 FLWETEEDNDECDAPSEL 180 (197)
Q Consensus 163 ~~~~~g~~~ea~~~~~~~ 180 (197)
++..+|++++|+..|++.
T Consensus 476 ~~~~~g~~~~A~~~~~~A 493 (615)
T TIGR00990 476 LLLDQNKFDEAIEKFDTA 493 (615)
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 999999999998888874
No 4
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.80 E-value=4.2e-19 Score=130.70 Aligned_cols=104 Identities=14% Similarity=0.078 Sum_probs=98.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
.|++++|+.+|++++.++|.+..+|.++|.++.. .|++++|+.+|+++++++|+++.+++++|.++..+|+ +++|+..
T Consensus 37 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~-~~eAi~~ 114 (144)
T PRK15359 37 EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGE-PGLAREA 114 (144)
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC-HHHHHHH
Confidence 5999999999999999999999999999988887 9999999999999999999999999999999999885 9999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcC
Q 029199 143 YERAVHASPEDSHVHASYAGFLWETE 168 (197)
Q Consensus 143 ~~~al~~~p~~~~~~~~la~~~~~~g 168 (197)
|+++++++|+++..+.+++.+...++
T Consensus 115 ~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 115 FQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999887653
No 5
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=2.4e-19 Score=154.46 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=141.4
Q ss_pred CCcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCC
Q 029199 2 AGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENP 81 (197)
Q Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P 81 (197)
.||.||=.+.+..||.+|..++..+|..+-.|--.|..... ..++|.|..+|++||..+|
T Consensus 427 ~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~--------------------~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 427 LGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA--------------------TEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred hcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhh--------------------hHHHHhHHHHHHhhhcCCc
Confidence 47778888888888888888888888777776666655544 4899999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199 82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYA 161 (197)
Q Consensus 82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 161 (197)
.+-.+|+.+|.++.+ +++++.|+-.|++|++++|.|..+...+|.++.+.|+ .++|++.|++|+.++|.|+...+..|
T Consensus 487 rhYnAwYGlG~vy~K-qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~-~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLK-QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKR-KDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheec-cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhh-hhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 999999999988887 9999999999999999999999999999999999996 89999999999999999999999999
Q ss_pred HHHHHcCCccccccCCCcc
Q 029199 162 GFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 162 ~~~~~~g~~~ea~~~~~~~ 180 (197)
.++..++++++|...++++
T Consensus 565 ~il~~~~~~~eal~~LEeL 583 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEEL 583 (638)
T ss_pred HHHHhhcchHHHHHHHHHH
Confidence 9999999999998888886
No 6
>PRK12370 invasion protein regulator; Provisional
Probab=99.78 E-value=2.5e-18 Score=151.69 Aligned_cols=151 Identities=12% Similarity=-0.013 Sum_probs=138.4
Q ss_pred HHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199 8 EEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFL 87 (197)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 87 (197)
..++..+|+..+..+++.+|+++..+...|..+.. .|++++|++.|+++++++|+++.+|
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~--------------------~g~~~~A~~~~~~Al~l~P~~~~a~ 375 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI--------------------HSEYIVGSLLFKQANLLSPISADIK 375 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--------------------ccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 45678999999999999999999999999988766 4999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Q 029199 88 SNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS-PEDSHVHASYAGFLWE 166 (197)
Q Consensus 88 ~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 166 (197)
+.+|.++.. .|++++|+..|+++++++|.++.+++.++.+++..|+ +++|+.++++++... |+++..+.++|.++..
T Consensus 376 ~~lg~~l~~-~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~-~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~ 453 (553)
T PRK12370 376 YYYGWNLFM-AGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTG-IDDAIRLGDELRSQHLQDNPILLSMQVMFLSL 453 (553)
T ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC-HHHHHHHHHHHHHhccccCHHHHHHHHHHHHh
Confidence 999988877 9999999999999999999999887777777788785 899999999999885 8899999999999999
Q ss_pred cCCccccccCCCcc
Q 029199 167 TEEDNDECDAPSEL 180 (197)
Q Consensus 167 ~g~~~ea~~~~~~~ 180 (197)
+|++++|...++++
T Consensus 454 ~G~~~eA~~~~~~~ 467 (553)
T PRK12370 454 KGKHELARKLTKEI 467 (553)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999888875
No 7
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.76 E-value=8.5e-18 Score=137.58 Aligned_cols=152 Identities=9% Similarity=0.005 Sum_probs=129.4
Q ss_pred chhHHHHHHHHhhhcCcccccCCCC----hhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC
Q 029199 5 ALSEEVKVMEALWNAGFEQERGTVG----QEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN 80 (197)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 80 (197)
.+...++.+.+|..++.++...|-+ +..|+.+|..+... |++++|+..|+++++++
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~--------------------g~~~~A~~~~~~Al~l~ 94 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSL--------------------GLRALARNDFSQALALR 94 (296)
T ss_pred ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHcC
Confidence 3444578899999999999765533 56799999988774 99999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199 81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASY 160 (197)
Q Consensus 81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 160 (197)
|+++.+|+++|.++.. .|++++|+..|+++++++|+++.++.++|.+++..|+ +++|++.|+++++++|+++.....
T Consensus 95 P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~-~~eA~~~~~~al~~~P~~~~~~~~- 171 (296)
T PRK11189 95 PDMADAYNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGR-YELAQDDLLAFYQDDPNDPYRALW- 171 (296)
T ss_pred CCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHH-
Confidence 9999999999977776 9999999999999999999999999999999999885 999999999999999999843222
Q ss_pred HHHHHHcCCccccccCCCc
Q 029199 161 AGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 161 a~~~~~~g~~~ea~~~~~~ 179 (197)
..+....++.++|...+++
T Consensus 172 ~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 172 LYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHccCCHHHHHHHHHH
Confidence 2234556788898877754
No 8
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.76 E-value=3.1e-18 Score=158.34 Aligned_cols=172 Identities=13% Similarity=0.089 Sum_probs=135.3
Q ss_pred chhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCCCc------ccCCCCCHHHHH
Q 029199 5 ALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSGFY------PAGSGGDSQGVE 70 (197)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~------~~~~~g~~~~A~ 70 (197)
++-+.|++.+|+..|.......|.+ ..++..|..+...|.... ....|..... .....|++++|+
T Consensus 518 al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHH
Confidence 3456677777777776655544443 334555554444443221 1112322211 111239999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 029199 71 EYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS 150 (197)
Q Consensus 71 ~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~ 150 (197)
..|+++++++|+ +.++.++|.++.. .|++++|+.+|+++++++|+++.++.++|.++...|+ +++|+++|+++++++
T Consensus 597 ~~~~~AL~l~P~-~~a~~~LA~~l~~-lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~-~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 597 NDLTRSLNIAPS-ANAYVARATIYRQ-RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD-IAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhC
Confidence 999999999996 9999999988777 9999999999999999999999999999999999885 999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 151 PEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 151 p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
|+++.+++++|.++..+|++++|+..+++.
T Consensus 674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 674 PDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999888885
No 9
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.75 E-value=5.6e-18 Score=138.65 Aligned_cols=155 Identities=12% Similarity=-0.001 Sum_probs=129.3
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|+++...|+..+|+..|..+++.+|+++..|+..|..+... |++++|+..|+++++++|+
T Consensus 71 g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~--------------------g~~~~A~~~~~~Al~l~P~ 130 (296)
T PRK11189 71 GVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQA--------------------GNFDAAYEAFDSVLELDPT 130 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHhCCC
Confidence 77888899999999999999999999999999999988774 9999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHA------------- 149 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~------------- 149 (197)
+..+|.++|.+++. .|++++|++.|+++++++|+++.....+. +... .+++++|++.|++++..
T Consensus 131 ~~~a~~~lg~~l~~-~g~~~eA~~~~~~al~~~P~~~~~~~~~~-l~~~-~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 207 (296)
T PRK11189 131 YNYAYLNRGIALYY-GGRYELAQDDLLAFYQDDPNDPYRALWLY-LAES-KLDPKQAKENLKQRYEKLDKEQWGWNIVEF 207 (296)
T ss_pred CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHc-cCCHHHHHHHHHHHHhhCCccccHHHHHHH
Confidence 99999999988887 99999999999999999999984322221 1222 33467777777554432
Q ss_pred ------------------------CCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 150 ------------------------SPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 150 ------------------------~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.|..+++|+++|.++.++|++++|+..|++.
T Consensus 208 ~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 208 YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3334567899999999999999999999885
No 10
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.75 E-value=2.8e-17 Score=127.12 Aligned_cols=117 Identities=9% Similarity=0.135 Sum_probs=108.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHcCC-HHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLV-WELHND-QDRAA 140 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l-~~~~~~-~~~A~ 140 (197)
.++.++++..++++++.+|+++..|..+|.++.. .|++++|+.+|+++++++|+++.++.++|.++ ...|+. +++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~-~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLW-RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 5788999999999999999999999999977777 99999999999999999999999999999986 454531 48999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 141 TYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 141 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+.++++++++|+++.+++++|.++.++|++++|+..++++
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998885
No 11
>PRK12370 invasion protein regulator; Provisional
Probab=99.75 E-value=1e-17 Score=147.85 Aligned_cols=158 Identities=13% Similarity=-0.007 Sum_probs=135.5
Q ss_pred HHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 029199 10 VKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSN 89 (197)
Q Consensus 10 ~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~ 89 (197)
....+|+..|..+++.+|+++..|...|......+.. ......+++++|+..++++++++|+++.+|..
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~-----------g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~ 343 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQM-----------GIFDKQNAMIKAKEHAIKATELDHNNPQALGL 343 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHc-----------CCcccchHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3467999999999999999999887777543211100 00112478999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 029199 90 YAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEE 169 (197)
Q Consensus 90 la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 169 (197)
+|.++.. .|++++|+.+|+++++++|+++.+++++|.++...|+ +++|+.+++++++++|.++..++.++.++...|+
T Consensus 344 lg~~~~~-~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~-~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~ 421 (553)
T PRK12370 344 LGLINTI-HSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ-LEEALQTINECLKLDPTRAAAGITKLWITYYHTG 421 (553)
T ss_pred HHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC
Confidence 9977776 9999999999999999999999999999999999885 9999999999999999999888888888888999
Q ss_pred ccccccCCCcc
Q 029199 170 DNDECDAPSEL 180 (197)
Q Consensus 170 ~~ea~~~~~~~ 180 (197)
+++|+..++++
T Consensus 422 ~eeA~~~~~~~ 432 (553)
T PRK12370 422 IDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHH
Confidence 99998888764
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.74 E-value=1.7e-17 Score=148.04 Aligned_cols=149 Identities=15% Similarity=0.073 Sum_probs=136.7
Q ss_pred HHHHHHhhhcCccccc---CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 029199 10 VKVMEALWNAGFEQER---GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLF 86 (197)
Q Consensus 10 ~~~~~a~~~~~~~~~~---~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 86 (197)
+++.+|+..|..+++. .|..+..+...|..... .|++++|+..|+++++++|++...
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~--------------------~g~~~eA~~~~~kal~l~P~~~~~ 367 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCL--------------------KGKHLEALADLSKSIELDPRVTQS 367 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHcCCCcHHH
Confidence 4688899998888765 46777788888887665 499999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199 87 LSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWE 166 (197)
Q Consensus 87 ~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 166 (197)
|.++|.++.. .|++++|+.+|+++++++|+++.+++++|.+++..|+ +++|+.+|+++++++|++..++.++|.++.+
T Consensus 368 ~~~la~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~kal~l~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 368 YIKRASMNLE-LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE-FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence 9999988887 9999999999999999999999999999999999884 9999999999999999999999999999999
Q ss_pred cCCccccccCCCcc
Q 029199 167 TEEDNDECDAPSEL 180 (197)
Q Consensus 167 ~g~~~ea~~~~~~~ 180 (197)
+|++++|...+++.
T Consensus 446 ~g~~~eA~~~~~~a 459 (615)
T TIGR00990 446 EGSIASSMATFRRC 459 (615)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999888874
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.74 E-value=1.6e-17 Score=149.08 Aligned_cols=155 Identities=17% Similarity=0.162 Sum_probs=120.2
Q ss_pred cchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHH----HHHHHHHHHHh
Q 029199 4 TALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQG----VEEYYKKMVEE 79 (197)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----A~~~~~~al~~ 79 (197)
.+|.+.+++.+|+..|..+++.+|+++..+...|..+... |++++ |+..|++++++
T Consensus 220 ~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~--------------------G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQS--------------------GRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------------------CCchhhHHHHHHHHHHHHhh
Confidence 3455667777777777777777777777777777666553 66654 78888888888
Q ss_pred CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 029199 80 NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHAS 159 (197)
Q Consensus 80 ~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 159 (197)
+|+++.++.++|.++.. .|++++|+..++++++++|+++.++.++|.++...|+ +++|+..|+++++.+|+++..+..
T Consensus 280 ~P~~~~a~~~lg~~l~~-~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~-~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 280 NSDNVRIVTLYADALIR-TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ-YTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred CCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCccchHHHHH
Confidence 88888888888877776 8888888888888888888888888888888888774 888888888888888887777777
Q ss_pred HHHHHHHcCCccccccCCCcc
Q 029199 160 YAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 160 la~~~~~~g~~~ea~~~~~~~ 180 (197)
+|.++..+|++++|...|+++
T Consensus 358 ~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 788888888888887777764
No 14
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.73 E-value=1.5e-17 Score=128.03 Aligned_cols=120 Identities=19% Similarity=0.225 Sum_probs=109.4
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 029199 59 PAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDR 138 (197)
Q Consensus 59 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~ 138 (197)
.+...|++..|.+.++++|+.||++..+|..++ .+|...|+.+.|.+.|++|++++|++.++++|+|.+|+..|+ +++
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A-~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~-~~e 121 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRA-HYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR-PEE 121 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH-HHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC-hHH
Confidence 345569999999999999999999999999999 555559999999999999999999999999999999999885 999
Q ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 139 AATYYERAVHA--SPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 139 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
|..+|++|+.. .|..+..+-|+|.|..+.|+.+.|...|++.
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra 165 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRA 165 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHH
Confidence 99999999975 3667789999999999999999999888883
No 15
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.73 E-value=3e-17 Score=126.78 Aligned_cols=156 Identities=21% Similarity=0.224 Sum_probs=141.1
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|.++...+++.+|+..|..+++.+|+++..+...|..... .|++++|++.|+++++.+|+
T Consensus 38 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~--------------------~~~~~~A~~~~~~al~~~~~ 97 (234)
T TIGR02521 38 ALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQ--------------------LGELEKAEDSFRRALTLNPN 97 (234)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhhCCC
Confidence 4567778899999999999999999999999888877666 49999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD--PGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASY 160 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 160 (197)
+..++.++|.++.. .|++++|+..|+++++.. |..+..+.++|.++...|+ +++|..+|+++++.+|+++.++..+
T Consensus 98 ~~~~~~~~~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l 175 (234)
T TIGR02521 98 NGDVLNNYGTFLCQ-QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD-FDKAEKYLTRALQIDPQRPESLLEL 175 (234)
T ss_pred CHHHHHHHHHHHHH-cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCChHHHHHH
Confidence 99999999988877 999999999999999853 5677899999999999885 9999999999999999999999999
Q ss_pred HHHHHHcCCccccccCCCcc
Q 029199 161 AGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 161 a~~~~~~g~~~ea~~~~~~~ 180 (197)
+.++...|++++|...+++.
T Consensus 176 a~~~~~~~~~~~A~~~~~~~ 195 (234)
T TIGR02521 176 AELYYLRGQYKDARAYLERY 195 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999998877775
No 16
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=2.1e-18 Score=148.73 Aligned_cols=116 Identities=11% Similarity=0.156 Sum_probs=111.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
.++++.|+++|++|+++||+++-+|..+|.-+.. ..++++|..+|++||..+|++..+|+.+|.+|.++++ ++.|+-+
T Consensus 434 Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~-~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek-~e~Ae~~ 511 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA-TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEK-LEFAEFH 511 (638)
T ss_pred hhHHHHHHHHHHHhhccCCccchhhhhcCChhhh-hHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccch-hhHHHHH
Confidence 6999999999999999999999999999977776 8999999999999999999999999999999999886 9999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
|++|+.++|.|..+.-.+|.++.++|+.|+|.+.+.+.
T Consensus 512 fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A 549 (638)
T KOG1126|consen 512 FQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKA 549 (638)
T ss_pred HHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999888884
No 17
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.73 E-value=1.6e-17 Score=127.86 Aligned_cols=152 Identities=17% Similarity=0.148 Sum_probs=137.2
Q ss_pred hhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHH
Q 029199 6 LSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPL 85 (197)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~ 85 (197)
|=+.|....|..++.++++.+|++.-.|..+...+-.. |+.+.|.+.|++|++++|++.+
T Consensus 45 YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~--------------------Ge~~~A~e~YrkAlsl~p~~Gd 104 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKL--------------------GENDLADESYRKALSLAPNNGD 104 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc--------------------CChhhHHHHHHHHHhcCCCccc
Confidence 44556777888999999999999999999999888774 9999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 86 FLSNYAQFLYQSKQDLPKAEEYYSRAILA--DPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGF 163 (197)
Q Consensus 86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 163 (197)
+++|+|.+++. +|++++|...|++|+.. .|.-+..+.|+|.|-.+.|+ ++.|.++|+++|+++|+++.....++..
T Consensus 105 VLNNYG~FLC~-qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq-~~~A~~~l~raL~~dp~~~~~~l~~a~~ 182 (250)
T COG3063 105 VLNNYGAFLCA-QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ-FDQAEEYLKRALELDPQFPPALLELARL 182 (250)
T ss_pred hhhhhhHHHHh-CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC-chhHHHHHHHHHHhCcCCChHHHHHHHH
Confidence 99999999998 99999999999999973 34566899999999999885 8999999999999999999999999999
Q ss_pred HHHcCCccccccCCCc
Q 029199 164 LWETEEDNDECDAPSE 179 (197)
Q Consensus 164 ~~~~g~~~ea~~~~~~ 179 (197)
.++.|++-+|.-.+.+
T Consensus 183 ~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 183 HYKAGDYAPARLYLER 198 (250)
T ss_pred HHhcccchHHHHHHHH
Confidence 9999999999655554
No 18
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.72 E-value=2.8e-17 Score=120.96 Aligned_cols=107 Identities=16% Similarity=0.102 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199 69 VEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVH 148 (197)
Q Consensus 69 A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~ 148 (197)
-...|+++++++|++ +.++|..+.. .|++++|+.+|++++.++|.++.++.++|.++...|+ +++|+.+|+++++
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQ-EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE-YTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh-HHHHHHHHHHHHh
Confidence 457899999999986 5678978777 9999999999999999999999999999999999895 9999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 149 ASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 149 ~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
++|+++.+++++|.++..+|++++|+..|++.
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTA 118 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999884
No 19
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.72 E-value=6.4e-17 Score=125.10 Aligned_cols=129 Identities=13% Similarity=0.114 Sum_probs=116.6
Q ss_pred hhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHH
Q 029199 6 LSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPL 85 (197)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~ 85 (197)
++...++.+++..+...++.+|++++.|+..|..+.. .|++++|+.+|+++++++|+++.
T Consensus 49 ~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~--------------------~g~~~~A~~a~~~Al~l~P~~~~ 108 (198)
T PRK10370 49 FASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLW--------------------RNDYDNALLAYRQALQLRGENAE 108 (198)
T ss_pred ccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHHhCCCCHH
Confidence 3456778999999999999999999999999988766 49999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 029199 86 FLSNYAQFLYQSKQD--LPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSH 155 (197)
Q Consensus 86 ~~~~la~~l~~~~g~--~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~ 155 (197)
++.++|.+++...|+ +++|++.++++++++|+++.+++++|..++..| ++++|+.+++++++++|.+..
T Consensus 109 ~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g-~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 109 LYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQA-DYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCcc
Confidence 999999876543777 599999999999999999999999999999988 599999999999999987553
No 20
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.69 E-value=5.5e-17 Score=153.70 Aligned_cols=176 Identities=16% Similarity=0.136 Sum_probs=149.8
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCCC-----------------
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSGF----------------- 57 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~----------------- 57 (197)
|.++-+.+++.+|+..|..+++.+|+++.++...|..+...|.+.+ ....|....
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 5566778999999999999999999999999999999887776433 123444321
Q ss_pred ---cccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----
Q 029199 58 ---YPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLV----- 129 (197)
Q Consensus 58 ---~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l----- 129 (197)
..+...|++++|++.|+++++++|+++.++..+|.++.. .|++++|+++|+++++++|+++.++..++.++
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~-~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMA-RKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence 123457999999999999999999999999999988887 99999999999999999999998887776553
Q ss_pred -------------------------------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccc
Q 029199 130 -------------------------------------WELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDND 172 (197)
Q Consensus 130 -------------------------------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 172 (197)
...| ++++|+++|+++++++|+++.+++.+|.++.++|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g-~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQG-KWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 2335 58999999999999999999999999999999999999
Q ss_pred cccCCCcc
Q 029199 173 ECDAPSEL 180 (197)
Q Consensus 173 a~~~~~~~ 180 (197)
|...++++
T Consensus 514 A~~~l~~a 521 (1157)
T PRK11447 514 ADALMRRL 521 (1157)
T ss_pred HHHHHHHH
Confidence 98888875
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.69 E-value=8.8e-17 Score=148.83 Aligned_cols=148 Identities=12% Similarity=0.075 Sum_probs=131.4
Q ss_pred HHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 029199 10 VKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSN 89 (197)
Q Consensus 10 ~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~ 89 (197)
|++.+|+..|..+++.+|+ +..++..|..+.. .|++++|+..|++++.++|+++.++.+
T Consensus 590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~--------------------lG~~deA~~~l~~AL~l~Pd~~~a~~n 648 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPS-ANAYVARATIYRQ--------------------RHNVPAAVSDLRAALELEPNNSNYQAA 648 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 6666666666666666664 6666666665555 599999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 029199 90 YAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEE 169 (197)
Q Consensus 90 la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 169 (197)
+|.++.. .|++++|+..|+++++++|+++.+++++|.++..+|+ +++|+.+|+++++++|++..+....|.+.....+
T Consensus 649 LG~aL~~-~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd-~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~ 726 (987)
T PRK09782 649 LGYALWD-SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD-MAATQHYARLVIDDIDNQALITPLTPEQNQQRFN 726 (987)
T ss_pred HHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHH
Confidence 9988887 9999999999999999999999999999999999885 9999999999999999999999999999999999
Q ss_pred ccccccCCCcc
Q 029199 170 DNDECDAPSEL 180 (197)
Q Consensus 170 ~~ea~~~~~~~ 180 (197)
++.+.+.+++.
T Consensus 727 ~~~a~~~~~r~ 737 (987)
T PRK09782 727 FRRLHEEVGRR 737 (987)
T ss_pred HHHHHHHHHHH
Confidence 99998877774
No 22
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.69 E-value=1.3e-16 Score=144.95 Aligned_cols=114 Identities=25% Similarity=0.339 Sum_probs=89.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
.|++++|++.|+++++.+|+++.++.+++.++.. .|+ .+|+..+++++.+.|+++.++.++|.++...|+ +++|+.+
T Consensus 783 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~ 859 (899)
T TIGR02917 783 QKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE-LKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE-ADRALPL 859 (899)
T ss_pred CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHH
Confidence 4778888888888888888888888888766665 777 778888888888888888888888888777664 7888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
|+++++++|.++.++.+++.++...|++++|.+.+++
T Consensus 860 ~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 896 (899)
T TIGR02917 860 LRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDK 896 (899)
T ss_pred HHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888888888888888888888888887766654
No 23
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=7e-17 Score=130.88 Aligned_cols=132 Identities=22% Similarity=0.274 Sum_probs=102.2
Q ss_pred CCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 029199 27 TVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEE 106 (197)
Q Consensus 27 p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~ 106 (197)
+.++..++..|..... .|+.++|+++|+++++++|+++.++..++.++.. .|+.+++..
T Consensus 143 ~~~~~~~~~~a~~~~~--------------------~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-~~~~~~~~~ 201 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQ--------------------LGDPDKALRDYRKALELDPDDPDARNALAWLLID-MGDYDEARE 201 (280)
T ss_dssp -T-HHHHHHHHHHHHH--------------------CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCChHHHHH
Confidence 5677778777777665 4999999999999999999999999999977766 999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 107 YYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 107 ~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.++...+..|+++.++..+|.++..+|+ +++|+.+|+++++.+|+|+.++.++|.++...|+.++|...++++
T Consensus 202 ~l~~~~~~~~~~~~~~~~la~~~~~lg~-~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 202 ALKRLLKAAPDDPDLWDALAAAYLQLGR-YEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHH-HTSCCHCHHHHHHHHHHT--HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHCcCHHHHHHHHHHHhccccc-ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999996 999999999999999999999999999999999999998887764
No 24
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=2.6e-16 Score=125.39 Aligned_cols=113 Identities=16% Similarity=0.169 Sum_probs=106.4
Q ss_pred CcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 029199 57 FYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQ 136 (197)
Q Consensus 57 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~ 136 (197)
|..++..++|.+|+..|.+||+++|+++..|.|++.+|.+ +|+++.|++.++.+|.+||....+|..+|.+|+.+|+ +
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~-Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk-~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK-LGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK-Y 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH-hcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc-H
Confidence 3456677999999999999999999999999999988887 9999999999999999999999999999999999886 9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcc
Q 029199 137 DRAATYYERAVHASPEDSHVHASYAGFLWETEEDN 171 (197)
Q Consensus 137 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 171 (197)
++|++.|+++|+++|+|...+.+|.+.-.++++..
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999888777
No 25
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.66 E-value=6.2e-16 Score=138.64 Aligned_cols=144 Identities=12% Similarity=-0.026 Sum_probs=129.6
Q ss_pred HhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 029199 15 ALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFL 94 (197)
Q Consensus 15 a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l 94 (197)
++.++.-.-...|.+++.++..|-....+ |.+++|+..++.+++++|++..++.+++.++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~--------------------g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L 130 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAA--------------------HRSDEGLAVWRGIHQRFPDSSEAFILMLRGV 130 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHc--------------------CCcHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 34444444456777888877777665553 9999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 029199 95 YQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDEC 174 (197)
Q Consensus 95 ~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~ 174 (197)
.+ .+++++|+..++++++.+|+++.+++.+|.++.++|+ +++|+.+|++++..+|+++.++.++|.++...|+.++|.
T Consensus 131 ~~-~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~-~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~ 208 (694)
T PRK15179 131 KR-QQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQ-SEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR 208 (694)
T ss_pred HH-hccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc-hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 88 9999999999999999999999999999999999996 999999999999999999999999999999999999999
Q ss_pred cCCCcc
Q 029199 175 DAPSEL 180 (197)
Q Consensus 175 ~~~~~~ 180 (197)
..|++.
T Consensus 209 ~~~~~a 214 (694)
T PRK15179 209 DVLQAG 214 (694)
T ss_pred HHHHHH
Confidence 988874
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.66 E-value=6.5e-16 Score=138.77 Aligned_cols=175 Identities=14% Similarity=0.046 Sum_probs=146.1
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCC-C------CcccCCCCCHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGS-G------FYPAGSGGDSQ 67 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~-~------~~~~~~~g~~~ 67 (197)
|.++...|++.+|+..+.......|+++..+...+. +...|...+ ....|.. . ...+...|+++
T Consensus 151 a~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~ 229 (656)
T PRK15174 151 LRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQ 229 (656)
T ss_pred HHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHH
Confidence 567888899999999998888889999888765433 333333211 0111111 1 12344579999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199 68 GVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPK----AEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYY 143 (197)
Q Consensus 68 ~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~----A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~ 143 (197)
+|+..|+++++++|+++.+++++|.++.. .|++++ |+..|+++++++|+++.++.++|.++...|+ +++|+.++
T Consensus 230 eA~~~~~~al~~~p~~~~~~~~Lg~~l~~-~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~-~~eA~~~l 307 (656)
T PRK15174 230 EAIQTGESALARGLDGAALRRSLGLAYYQ-SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQ-NEKAIPLL 307 (656)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 99999999999999999999999988887 999985 8999999999999999999999999999885 99999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 144 ERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 144 ~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+++++++|+++.++.++|.++..+|++++|...++++
T Consensus 308 ~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~a 344 (656)
T PRK15174 308 QQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQL 344 (656)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999988886
No 27
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.66 E-value=8.1e-16 Score=145.80 Aligned_cols=160 Identities=17% Similarity=0.205 Sum_probs=143.1
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|.++...+++.+|+..|..+++.+|+++..++..|..+.. .|++++|+++|+++++++|+
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~--------------------~g~~~eA~~~y~~aL~~~p~ 417 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMA--------------------RKDYAAAERYYQQALRMDPG 417 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHHhCCC
Confidence 4456677899999999999999999999999988887766 49999999999999999999
Q ss_pred CHHHHHHHHHHHH-----------------------------------------HhcCCHHHHHHHHHHHHHhCCCCHHH
Q 029199 83 NPLFLSNYAQFLY-----------------------------------------QSKQDLPKAEEYYSRAILADPGDGEI 121 (197)
Q Consensus 83 ~~~~~~~la~~l~-----------------------------------------~~~g~~~~A~~~~~~al~l~P~~~~~ 121 (197)
+..++..++.++. ...|++++|+..|+++++++|+++.+
T Consensus 418 ~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~ 497 (1157)
T PRK11447 418 NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWL 497 (1157)
T ss_pred CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 9988877764431 12689999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCccccc
Q 029199 122 LSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELDSN 183 (197)
Q Consensus 122 ~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~~~ 183 (197)
++.+|.++...|+ +++|+..|+++++.+|+++..++.++.++...|+.++|...+++++..
T Consensus 498 ~~~LA~~~~~~G~-~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~ 558 (1157)
T PRK11447 498 TYRLAQDLRQAGQ-RSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA 558 (1157)
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch
Confidence 9999999999885 999999999999999999999999999999999999999988887643
No 28
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=8.9e-16 Score=128.24 Aligned_cols=156 Identities=14% Similarity=0.086 Sum_probs=142.2
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
||-||=-...+.|+.-|..++..+|....+|--.|.-+-. +++...|+.+|++|++++|.
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE--------------------mKNt~AAi~sYRrAvdi~p~ 396 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE--------------------MKNTHAAIESYRRAVDINPR 396 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH--------------------hcccHHHHHHHHHHHhcCch
Confidence 6667778889999999999999999999888888887655 48899999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG 162 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 162 (197)
|-.+|+.||..+-. ++.+.-|+-+|++|+++-|+|+-+|..+|.+|.++++ .++|++||.+++.....+..++..+|.
T Consensus 397 DyRAWYGLGQaYei-m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~-~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEI-MKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNR-LEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred hHHHHhhhhHHHHH-hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc-HHHHHHHHHHHHhccccchHHHHHHHH
Confidence 99999999988776 9999999999999999999999999999999999997 899999999999999889999999999
Q ss_pred HHHHcCCccccccCCCcc
Q 029199 163 FLWETEEDNDECDAPSEL 180 (197)
Q Consensus 163 ~~~~~g~~~ea~~~~~~~ 180 (197)
++.++++..+|...|...
T Consensus 475 Lye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKY 492 (559)
T ss_pred HHHHHHhHHHHHHHHHHH
Confidence 999999999997766654
No 29
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.65 E-value=3.8e-15 Score=107.61 Aligned_cols=114 Identities=15% Similarity=0.106 Sum_probs=72.3
Q ss_pred cccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Q 029199 21 FEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQD 100 (197)
Q Consensus 21 ~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~ 100 (197)
.+++.+|++....+..|..+.. .|++++|+..|++++..+|+++.+|.++|.+++. .|+
T Consensus 8 ~~l~~~p~~~~~~~~~a~~~~~--------------------~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~ 66 (135)
T TIGR02552 8 DLLGLDSEQLEQIYALAYNLYQ--------------------QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-LKE 66 (135)
T ss_pred HHHcCChhhHHHHHHHHHHHHH--------------------cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HHH
Confidence 3445566666666665655544 2666666666666666666666666666655555 666
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 029199 101 LPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHV 156 (197)
Q Consensus 101 ~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~ 156 (197)
+++|+.+|+++++.+|+++..++++|.++...|+ +++|+..|+++++++|++...
T Consensus 67 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 67 YEEAIDAYALAAALDPDDPRPYFHAAECLLALGE-PESALKALDLAIEICGENPEY 121 (135)
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhccccchH
Confidence 6666666666666666666666666666666553 666666666666666666553
No 30
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.64 E-value=9.4e-16 Score=120.97 Aligned_cols=156 Identities=14% Similarity=0.051 Sum_probs=128.7
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCCh---hhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHh
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQ---EMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEE 79 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 79 (197)
|..+-..+++.+|+..|...+...|+++ ..++..|..+.. .|++++|+..|+++++.
T Consensus 40 g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~--------------------~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 40 AKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK--------------------SGDYAEAIAAADRFIRL 99 (235)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh--------------------cCCHHHHHHHHHHHHHH
Confidence 4556677888999999998888888876 466777777766 48999999999999999
Q ss_pred CCCCHH---HHHHHHHHHHHhc--------CCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHH
Q 029199 80 NPGNPL---FLSNYAQFLYQSK--------QDLPKAEEYYSRAILADPGDGEIL-----------------SQYAKLVWE 131 (197)
Q Consensus 80 ~P~~~~---~~~~la~~l~~~~--------g~~~~A~~~~~~al~l~P~~~~~~-----------------~~lg~~l~~ 131 (197)
+|+++. +++.+|.+++. . |++++|++.|++++..+|+++.++ ..+|.+++.
T Consensus 100 ~p~~~~~~~a~~~~g~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 178 (235)
T TIGR03302 100 HPNHPDADYAYYLRGLSNYN-QIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLK 178 (235)
T ss_pred CcCCCchHHHHHHHHHHHHH-hcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998876 68888877775 4 788999999999999999987553 356777888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 132 LHNDQDRAATYYERAVHASPED---SHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 132 ~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.|+ +++|+..|+++++..|++ +.+++.+|.++..+|++++|...++.+
T Consensus 179 ~g~-~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 179 RGA-YVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred cCC-hHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 774 899999999999997654 578999999999999999998776654
No 31
>PLN02789 farnesyltranstransferase
Probab=99.64 E-value=1.9e-15 Score=124.69 Aligned_cols=142 Identities=10% Similarity=0.040 Sum_probs=128.4
Q ss_pred hhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHH
Q 029199 6 LSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPL 85 (197)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~ 85 (197)
+...++..+|+..++.+++.+|.+..+|..+|..+..++ .++++++..++++++.+|++..
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~-------------------~~l~eeL~~~~~~i~~npknyq 107 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALD-------------------ADLEEELDFAEDVAEDNPKNYQ 107 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcc-------------------hhHHHHHHHHHHHHHHCCcchH
Confidence 334457789999999999999999999999999988751 3689999999999999999999
Q ss_pred HHHHHHHHHHHhcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 86 FLSNYAQFLYQSKQDL--PKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGF 163 (197)
Q Consensus 86 ~~~~la~~l~~~~g~~--~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 163 (197)
+|++++.++.. .++. ++++.+++++++++|+|..+|..+++++..+++ +++|+++++++|+.+|.|..+|++++.+
T Consensus 108 aW~~R~~~l~~-l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~-~~eeL~~~~~~I~~d~~N~sAW~~R~~v 185 (320)
T PLN02789 108 IWHHRRWLAEK-LGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGG-WEDELEYCHQLLEEDVRNNSAWNQRYFV 185 (320)
T ss_pred HhHHHHHHHHH-cCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHCCCchhHHHHHHHH
Confidence 99999977665 7764 788999999999999999999999999999985 9999999999999999999999999999
Q ss_pred HHHcC
Q 029199 164 LWETE 168 (197)
Q Consensus 164 ~~~~g 168 (197)
+.++|
T Consensus 186 l~~~~ 190 (320)
T PLN02789 186 ITRSP 190 (320)
T ss_pred HHhcc
Confidence 98873
No 32
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.64 E-value=2.8e-15 Score=108.35 Aligned_cols=108 Identities=18% Similarity=0.108 Sum_probs=102.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 029199 71 EYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS 150 (197)
Q Consensus 71 ~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~ 150 (197)
+.|++++..+|++..+.+.+|..++. .|++++|+..|++++.++|.++.++.++|.++...++ +++|..+|+++++.+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQ-QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKE-YEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcC
Confidence 56889999999999999999988887 9999999999999999999999999999999999885 999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 151 PEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 151 p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
|+++..++++|.++...|++++|...+++.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLA 111 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999888875
No 33
>PLN02789 farnesyltranstransferase
Probab=99.63 E-value=1.8e-15 Score=124.83 Aligned_cols=158 Identities=15% Similarity=0.070 Sum_probs=134.0
Q ss_pred CcchhHHH-HHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCC
Q 029199 3 GTALSEEV-KVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENP 81 (197)
Q Consensus 3 ~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P 81 (197)
|.+|...+ ++.+++..++.+++.+|++..+|..+|+.+..+|. ...++++.+++++++++|
T Consensus 78 ~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~------------------~~~~~el~~~~kal~~dp 139 (320)
T PLN02789 78 RLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP------------------DAANKELEFTRKILSLDA 139 (320)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc------------------hhhHHHHHHHHHHHHhCc
Confidence 55677777 57999999999999999999999999999877521 124778999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCC---HHHHHHHHHHHHHhCCCCHH
Q 029199 82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWEL---HND---QDRAATYYERAVHASPEDSH 155 (197)
Q Consensus 82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~---~~~---~~~A~~~~~~al~~~p~~~~ 155 (197)
++..+|.+++.++.. .|++++|+++++++|+.||+|..+|+.++.++..+ ++. .++++++..+++.++|+|..
T Consensus 140 kNy~AW~~R~w~l~~-l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~S 218 (320)
T PLN02789 140 KNYHAWSHRQWVLRT-LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNES 218 (320)
T ss_pred ccHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcC
Confidence 999999999977776 99999999999999999999999999999988765 221 35789999999999999999
Q ss_pred HHHHHHHHHHH----cCCccccccCCCc
Q 029199 156 VHASYAGFLWE----TEEDNDECDAPSE 179 (197)
Q Consensus 156 ~~~~la~~~~~----~g~~~ea~~~~~~ 179 (197)
+|..++.++.. +++..++...+.+
T Consensus 219 aW~Yl~~ll~~~~~~l~~~~~~~~~~~~ 246 (320)
T PLN02789 219 PWRYLRGLFKDDKEALVSDPEVSSVCLE 246 (320)
T ss_pred HHHHHHHHHhcCCcccccchhHHHHHHH
Confidence 99999999988 4455556544444
No 34
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.63 E-value=2.6e-15 Score=115.86 Aligned_cols=155 Identities=15% Similarity=0.096 Sum_probs=138.8
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC--
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN-- 80 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-- 80 (197)
|.++...+++.+|+..|....+..|.++..+...|..+.. .|++++|++.|+++++..
T Consensus 72 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~--------------------~g~~~~A~~~~~~~~~~~~~ 131 (234)
T TIGR02521 72 ALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ--------------------QGKYEQAMQQFEQAIEDPLY 131 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--------------------cccHHHHHHHHHHHHhcccc
Confidence 5567778899999999999999999999988888877655 499999999999999864
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199 81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASY 160 (197)
Q Consensus 81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 160 (197)
|.....+.++|.++.. .|++++|+..|+++++.+|+++.++..+|.+++..| ++++|..+++++++..|.++..+..+
T Consensus 132 ~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ 209 (234)
T TIGR02521 132 PQPARSLENAGLCALK-AGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRG-QYKDARAYLERYQQTYNQTAESLWLG 209 (234)
T ss_pred ccchHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5667889999988777 999999999999999999999999999999999977 59999999999999999999999999
Q ss_pred HHHHHHcCCccccccCCCc
Q 029199 161 AGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 161 a~~~~~~g~~~ea~~~~~~ 179 (197)
+.++...|+.+++....+.
T Consensus 210 ~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 210 IRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHhhHHHHHHHHHH
Confidence 9999999999998765444
No 35
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.62 E-value=9.2e-15 Score=114.55 Aligned_cols=115 Identities=17% Similarity=0.098 Sum_probs=107.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
.|++.+|+..++++..++|+++.+|..+|.+|-+ .|++++|...|.+++++.|++|.+..|+|..+.-.| |++.|..+
T Consensus 113 ~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq-~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~g-d~~~A~~l 190 (257)
T COG5010 113 NGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ-LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRG-DLEDAETL 190 (257)
T ss_pred hcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH-ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcC-CHHHHHHH
Confidence 5999999999999999999999999999966666 999999999999999999999999999999988866 69999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
+.++...-+.+..+..|++.+...+|++++|.+...+
T Consensus 191 ll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 191 LLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 9999998888999999999999999999999755544
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=3.7e-15 Score=124.59 Aligned_cols=122 Identities=14% Similarity=0.118 Sum_probs=114.2
Q ss_pred CcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 029199 57 FYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQ 136 (197)
Q Consensus 57 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~ 136 (197)
+..+.-.+++++|+.+|++|+++||+...+|...|.-+.. +.+...|++.|++|++++|.|.-+|+.+|.+|--++- .
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE-mKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~M-h 414 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE-MKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKM-H 414 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH-hcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcc-h
Confidence 3344556899999999999999999999999999988888 9999999999999999999999999999999999887 5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 137 DRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 137 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.=|+-+|++|+++.|+++..|..+|.||.++++.+||+..|.+.
T Consensus 415 ~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykra 458 (559)
T KOG1155|consen 415 FYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRA 458 (559)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999988884
No 37
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=7e-16 Score=131.57 Aligned_cols=109 Identities=14% Similarity=0.170 Sum_probs=94.1
Q ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 029199 70 EEYYKKMVEENP--GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAV 147 (197)
Q Consensus 70 ~~~~~~al~~~P--~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al 147 (197)
.+.|-.+...+| .++++...||.+++. .|+|++|++||+.||+.+|+|...|+.||-.+....+ .++|+..|.+||
T Consensus 414 ~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l-s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~-s~EAIsAY~rAL 491 (579)
T KOG1125|consen 414 QELFLEAARQLPTKIDPDVQSGLGVLYNL-SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNR-SEEAISAYNRAL 491 (579)
T ss_pred HHHHHHHHHhCCCCCChhHHhhhHHHHhc-chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcc-cHHHHHHHHHHH
Confidence 455666666777 678888888855554 7899999999999999999999999999999888554 899999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 148 HASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 148 ~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
++.|....++||+|..++.+|-|.||...|-+.
T Consensus 492 qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 492 QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 999999999999999999999999998777653
No 38
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.59 E-value=4.6e-14 Score=118.33 Aligned_cols=105 Identities=17% Similarity=0.168 Sum_probs=99.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
.|++++|+.+|+++++++|+++.+|+++|.++.. .|++++|+.++++++.++|+++.+++++|.+++.+|+ +++|+.+
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~-~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~-~~eA~~~ 92 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIK-LGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE-YQTAKAA 92 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC-HHHHHHH
Confidence 5999999999999999999999999999988887 9999999999999999999999999999999999885 9999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 029199 143 YERAVHASPEDSHVHASYAGFLWETEE 169 (197)
Q Consensus 143 ~~~al~~~p~~~~~~~~la~~~~~~g~ 169 (197)
|+++++++|+++.++..++.|..++.+
T Consensus 93 ~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 93 LEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999777743
No 39
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.59 E-value=3.2e-15 Score=125.81 Aligned_cols=177 Identities=15% Similarity=0.032 Sum_probs=141.4
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC-------CCCCCCCC-----------CcccCCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG-------GTGGGGSG-----------FYPAGSGG 64 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~-----------~~~~~~~g 64 (197)
|..+...+++.+|+..|..+.+.+|+++.+++..|..+...|.+.. .-..|... +..+...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 5566677889999999999999999999999888877766665322 01112111 22445569
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHHcCCHHHH
Q 029199 65 DSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGE-----ILSQYAKLVWELHNDQDRA 139 (197)
Q Consensus 65 ~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~-----~~~~lg~~l~~~~~~~~~A 139 (197)
++++|++.|+++++.+|.+..++..++.++.. .|++++|++.++++++.+|.+.. .+..+|.++...+ ++++|
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A 199 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQ-EKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG-DLDAA 199 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH-hchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC-CHHHH
Confidence 99999999999999999999999999977776 89999999999999988887643 5667888888867 48999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCccc
Q 029199 140 ATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELD 181 (197)
Q Consensus 140 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~ 181 (197)
+.+|+++++.+|++..+++.+|.++.+.|++++|...++++.
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 241 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVE 241 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988888753
No 40
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.58 E-value=3.1e-14 Score=104.80 Aligned_cols=86 Identities=10% Similarity=-0.021 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
.|++++|.+.|+.+..+||.+...|++||.++.. +|++.+|+.+|.+++.++|+||..+++.|.++..+|+ .+.|++.
T Consensus 48 ~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~-~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~-~~~A~~a 125 (157)
T PRK15363 48 VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA-QKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDN-VCYAIKA 125 (157)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC-HHHHHHH
Confidence 5788888888888888888888888888855555 7888888888888888888888888888888777774 7788888
Q ss_pred HHHHHHhC
Q 029199 143 YERAVHAS 150 (197)
Q Consensus 143 ~~~al~~~ 150 (197)
|+.++...
T Consensus 126 F~~Ai~~~ 133 (157)
T PRK15363 126 LKAVVRIC 133 (157)
T ss_pred HHHHHHHh
Confidence 88887776
No 41
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.58 E-value=1.2e-14 Score=131.97 Aligned_cols=174 Identities=13% Similarity=-0.008 Sum_probs=83.3
Q ss_pred cchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCCC------cccCCCCCHHHH
Q 029199 4 TALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSGF------YPAGSGGDSQGV 69 (197)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~------~~~~~~g~~~~A 69 (197)
.++-..+++.+|+..|..+++.+|.++..++..+..+...|.+.. ....|.... ..+...|++++|
T Consensus 133 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 212 (899)
T TIGR02917 133 LAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELA 212 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHH
Confidence 344455566666666666666666666666665555444332111 011122111 112223444455
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 029199 70 EEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHA 149 (197)
Q Consensus 70 ~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~ 149 (197)
+..|+++++.+|+++.++..++.++.. .|++++|...++++++..|+++.+++..|.+++..| ++++|+..|+++++.
T Consensus 213 ~~~~~~a~~~~p~~~~~~~~~~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~ 290 (899)
T TIGR02917 213 LAAYRKAIALRPNNPAVLLALATILIE-AGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKK-NYEDARETLQDALKS 290 (899)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Confidence 555555544455444444444444443 444555555555544444444444444444444444 245555555555555
Q ss_pred CCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 150 SPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 150 ~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
+|++...++.+|.++..+|++++|...+++
T Consensus 291 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 320 (899)
T TIGR02917 291 APEYLPALLLAGASEYQLGNLEQAYQYLNQ 320 (899)
T ss_pred CCCchhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555555555555555555555444444
No 42
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.58 E-value=1.7e-14 Score=106.15 Aligned_cols=103 Identities=12% Similarity=0.075 Sum_probs=96.4
Q ss_pred HHHhC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 029199 76 MVEEN-PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS 154 (197)
Q Consensus 76 al~~~-P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~ 154 (197)
+..++ ++.-+..+.+|..++. .|++++|+..|+-...+||.++..|+++|.++..+|+ +++|+++|.+|+.++|++|
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~-~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~-~~~AI~aY~~A~~L~~ddp 103 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLME-VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKH-WGEAIYAYGRAAQIKIDAP 103 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCCCCc
Confidence 35677 8888899999988887 9999999999999999999999999999999999885 9999999999999999999
Q ss_pred HHHHHHHHHHHHcCCccccccCCCcc
Q 029199 155 HVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 155 ~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
..++++|.|+...|+.++|.+.|+..
T Consensus 104 ~~~~~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 104 QAPWAAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999874
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=6e-15 Score=124.02 Aligned_cols=150 Identities=16% Similarity=0.181 Sum_probs=124.5
Q ss_pred HHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 029199 9 EVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLS 88 (197)
Q Consensus 9 ~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~ 88 (197)
...+++|+..|+++++.+|++.-.++..+..+.+ .++++++.+.|+++.+..|+.++++.
T Consensus 407 L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr--------------------~~k~~~~m~~Fee~kkkFP~~~Evy~ 466 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISLDPENAYAYIQLCCALYR--------------------QHKIAESMKTFEEAKKKFPNCPEVYN 466 (606)
T ss_pred HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHhCCCCchHHH
Confidence 3455566666666666666665555555555554 37888899999999999999999998
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199 89 NYAQFLYQSKQDLPKAEEYYSRAILADPG------DGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG 162 (197)
Q Consensus 89 ~la~~l~~~~g~~~~A~~~~~~al~l~P~------~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 162 (197)
-.|.++.. +++|++|++.|++|+.+.|. ++..+.+.|.++.+-.+|+.+|+.++++|+++||....++-.+|.
T Consensus 467 ~fAeiLtD-qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq 545 (606)
T KOG0547|consen 467 LFAEILTD-QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQ 545 (606)
T ss_pred HHHHHHhh-HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 88888887 89999999999999999999 888888888777766678999999999999999999999999999
Q ss_pred HHHHcCCccccccCCCc
Q 029199 163 FLWETEEDNDECDAPSE 179 (197)
Q Consensus 163 ~~~~~g~~~ea~~~~~~ 179 (197)
+..++|+.++|++.|+.
T Consensus 546 ~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 546 FELQRGKIDEAIELFEK 562 (606)
T ss_pred HHHHHhhHHHHHHHHHH
Confidence 99999999999999887
No 44
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.56 E-value=2e-14 Score=120.92 Aligned_cols=175 Identities=17% Similarity=0.056 Sum_probs=127.8
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCCC-----------cccCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSGF-----------YPAGSG 63 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~-----------~~~~~~ 63 (197)
|.++...|++.+|+..|..+.+..|.+...+...+..+...|.... ....|.... ..+...
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 4455566777777777777777777766666665555544443221 011121111 122346
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD-GEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
|++++|++.|+++++.+|++..++..+|.++.. .|++++|++.|+++++.+|.+ +.++..++.++...|+ +++|...
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~-~~~A~~~ 271 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCVRASILLGDLALA-QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD-EAEGLEF 271 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 889999999999999999988888888877776 899999999999999888876 4567788888888774 8999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
++++++..|+... +..++.++.+.|++++|...+++.
T Consensus 272 l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~ 308 (389)
T PRK11788 272 LRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQ 308 (389)
T ss_pred HHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999988887654 488899999999999988877764
No 45
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.56 E-value=4.6e-14 Score=128.96 Aligned_cols=153 Identities=11% Similarity=0.012 Sum_probs=137.4
Q ss_pred hHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 029199 7 SEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLF 86 (197)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 86 (197)
.-.|+..+|+..+......+|..+..+...+..+.. .|++++|++.|+++++++|+++.+
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~--------------------~g~~~~A~~~~~~al~~~P~~~~a 85 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRN--------------------LKQWQNSLTLWQKALSLEPQNDDY 85 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCCCHHH
Confidence 345677888888888777788888888888887766 499999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199 87 LSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWE 166 (197)
Q Consensus 87 ~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 166 (197)
+..++.++.. .|++++|+..++++++.+|+++. +..+|.++...|+ +++|+..|+++++++|+++.++..++.++..
T Consensus 86 ~~~la~~l~~-~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~-~~~Al~~l~~al~~~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 86 QRGLILTLAD-AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGR-HWDELRAMTQALPRAPQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999977777 99999999999999999999999 9999999999885 9999999999999999999999999999999
Q ss_pred cCCccccccCCCcccc
Q 029199 167 TEEDNDECDAPSELDS 182 (197)
Q Consensus 167 ~g~~~ea~~~~~~~~~ 182 (197)
.|..++|...+++++.
T Consensus 163 ~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 163 NRLSAPALGAIDDANL 178 (765)
T ss_pred CCChHHHHHHHHhCCC
Confidence 9999998877776543
No 46
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=2.8e-14 Score=113.86 Aligned_cols=112 Identities=14% Similarity=0.109 Sum_probs=104.6
Q ss_pred CCcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCC
Q 029199 2 AGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENP 81 (197)
Q Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P 81 (197)
.|+-+=+++++.+|+..|+++++.+|.++-.|+.|.-++..+ |.++.|++..+.+|.+||
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~L--------------------g~~~~AVkDce~Al~iDp 146 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKL--------------------GEYEDAVKDCESALSIDP 146 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh--------------------cchHHHHHHHHHHHhcCh
Confidence 467777899999999999999999999999999999999886 999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 029199 82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHN 134 (197)
Q Consensus 82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~ 134 (197)
++..+|..||..++. +|++.+|++.|+++|.++|+|..++.++.++-..++.
T Consensus 147 ~yskay~RLG~A~~~-~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 147 HYSKAYGRLGLAYLA-LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHHHHHHHHHHc-cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 999999999988777 9999999999999999999999999999988776664
No 47
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=2.3e-14 Score=120.54 Aligned_cols=117 Identities=17% Similarity=0.215 Sum_probs=111.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 029199 62 SGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAAT 141 (197)
Q Consensus 62 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~ 141 (197)
+..+.++-.+.|.+|..+||+++++|+.+|.+.+. ++++++|+..|+++++++|.+...+..++.+++++++ ++++..
T Consensus 372 d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl-L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k-~~~~m~ 449 (606)
T KOG0547|consen 372 DENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFL-LQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHK-IAESMK 449 (606)
T ss_pred hhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHH-HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHH-HHHHHH
Confidence 35888999999999999999999999999999888 9999999999999999999999999999999999896 999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 142 YYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 142 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.|+.+.+..|+-++++...|.++..++++++|++.|...
T Consensus 450 ~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 450 TFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 999999999999999999999999999999998888773
No 48
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.49 E-value=1.8e-13 Score=125.15 Aligned_cols=171 Identities=13% Similarity=0.045 Sum_probs=136.2
Q ss_pred hhHHHHHHHHhhhcCcccccCCCCh---hhHHhhhcccCCCCCCCC--------CCCCCCCC----------CcccCCCC
Q 029199 6 LSEEVKVMEALWNAGFEQERGTVGQ---EMYLAKGLGVGGRGGRGG--------GTGGGGSG----------FYPAGSGG 64 (197)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~~g~~~~~~~~~~~--------~~~~~~~~----------~~~~~~~g 64 (197)
+-+.++..+|+..|..+++..|..| ..++ |..+...|...+ ....|... ...+...|
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~l--a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWV--ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHH--HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 4466899999999999888864433 3333 444444454322 11223221 11335679
Q ss_pred CHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 029199 65 DSQGVEEYYKKMVEENPG---------------NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLV 129 (197)
Q Consensus 65 ~~~~A~~~~~~al~~~P~---------------~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l 129 (197)
++++|++.++++...+|. ...++..++.++.. .|++++|+..+++++...|+++.++..+|.++
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~-~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~ 403 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY-SNDLPQAEMRARELAYNAPGNQGLRIDYASVL 403 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999873 24567788877776 99999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 130 WELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 130 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
...|+ +++|++.+++++.++|+++.+++.+|.++..+|++++|+..++++
T Consensus 404 ~~~g~-~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 404 QARGW-PRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred HhcCC-HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99885 999999999999999999999999999999999999998888775
No 49
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.49 E-value=4.5e-13 Score=105.68 Aligned_cols=132 Identities=13% Similarity=0.101 Sum_probs=113.2
Q ss_pred CCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCHHH
Q 029199 27 TVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNP---LFLSNYAQFLYQSKQDLPK 103 (197)
Q Consensus 27 p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~l~~~~g~~~~ 103 (197)
+..+..++..|..+.. .|++++|+..|+++++.+|+++ .+++.+|.+++. .|++++
T Consensus 30 ~~~~~~~~~~g~~~~~--------------------~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~-~~~~~~ 88 (235)
T TIGR03302 30 EWPAEELYEEAKEALD--------------------SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK-SGDYAE 88 (235)
T ss_pred cCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-cCCHHH
Confidence 4455666666666544 4999999999999999999986 578999988887 999999
Q ss_pred HHHHHHHHHHhCCCCHH---HHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH---------------
Q 029199 104 AEEYYSRAILADPGDGE---ILSQYAKLVWEL--------HNDQDRAATYYERAVHASPEDSHVH--------------- 157 (197)
Q Consensus 104 A~~~~~~al~l~P~~~~---~~~~lg~~l~~~--------~~~~~~A~~~~~~al~~~p~~~~~~--------------- 157 (197)
|+..|+++++.+|+++. +++.+|.+++.. + ++++|++.|+++++.+|++...+
T Consensus 89 A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~ 167 (235)
T TIGR03302 89 AIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQT-AAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAG 167 (235)
T ss_pred HHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHH-HHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 689999999875 5 48999999999999999987653
Q ss_pred --HHHHHHHHHcCCccccccCCCcc
Q 029199 158 --ASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 158 --~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
..+|.++.+.|++++|...++++
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~a 192 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETV 192 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHH
Confidence 46788999999999998888775
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.47 E-value=4.3e-14 Score=114.56 Aligned_cols=175 Identities=18% Similarity=0.108 Sum_probs=101.6
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCC----------CCCCCCCC---cccCCCCCHHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGG----------TGGGGSGF---YPAGSGGDSQGV 69 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~---~~~~~~g~~~~A 69 (197)
|......++..+|+..+..++..++.++..+...+.- ...+.+... ...|.... ..+...++++++
T Consensus 51 a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 129 (280)
T PF13429_consen 51 ADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEA 129 (280)
T ss_dssp --------------------------------------------------------------------H-HHHTT-HHHH
T ss_pred ccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHH
Confidence 3445567788889999999988888877664433222 222322210 01111111 122345999999
Q ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 029199 70 EEYYKKMVEEN--PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAV 147 (197)
Q Consensus 70 ~~~~~~al~~~--P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al 147 (197)
...++++.... |.++.+|..+|.++.. .|+.++|+.+|+++++++|+|+.++..+++++...|+ .+++.+.++...
T Consensus 130 ~~~l~~~~~~~~~~~~~~~~~~~a~~~~~-~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~-~~~~~~~l~~~~ 207 (280)
T PF13429_consen 130 EELLEKLEELPAAPDSARFWLALAEIYEQ-LGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGD-YDEAREALKRLL 207 (280)
T ss_dssp HHHHHHHHH-T---T-HHHHHHHHHHHHH-CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-hHHHHHHHHHHH
Confidence 99999987766 7889999999987777 9999999999999999999999999999999999785 899999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 148 HASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 148 ~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+..|+++..|..+|.++..+|++++|...+++.
T Consensus 208 ~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 208 KAAPDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHhcccccccccccccccc
Confidence 988999999999999999999999999998885
No 51
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=3.7e-13 Score=115.14 Aligned_cols=123 Identities=12% Similarity=0.132 Sum_probs=108.2
Q ss_pred CChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 029199 28 VGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEY 107 (197)
Q Consensus 28 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~ 107 (197)
.||.++...|+-+.. .|+|++|+.||+.||+.+|+|...|+.||..+.. ..+..+|+..
T Consensus 428 ~DpdvQ~~LGVLy~l--------------------s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIsA 486 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNL--------------------SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAISA 486 (579)
T ss_pred CChhHHhhhHHHHhc--------------------chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHHH
Confidence 466666666666554 5999999999999999999999999999988887 8899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCccc
Q 029199 108 YSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPE----------DSHVHASYAGFLWETEEDND 172 (197)
Q Consensus 108 ~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~g~~~e 172 (197)
|.+||++.|...-+++|+|+.+..+| .|++|.++|-.||.+.+. +..+|..|-.++.-+++.|-
T Consensus 487 Y~rALqLqP~yVR~RyNlgIS~mNlG-~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~ 560 (579)
T KOG1125|consen 487 YNRALQLQPGYVRVRYNLGISCMNLG-AYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL 560 (579)
T ss_pred HHHHHhcCCCeeeeehhhhhhhhhhh-hHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence 99999999999999999999999999 599999999999998754 23588888888888888873
No 52
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=1e-12 Score=102.73 Aligned_cols=146 Identities=14% Similarity=0.089 Sum_probs=119.1
Q ss_pred CCCcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC
Q 029199 1 MAGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN 80 (197)
Q Consensus 1 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 80 (197)
|+|+.|.-.+...+|+.-|+..++.+|.|..++-.+-..+-. .|+.-+|++.+.+-++..
T Consensus 91 lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka--------------------~GK~l~aIk~ln~YL~~F 150 (289)
T KOG3060|consen 91 LKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKA--------------------QGKNLEAIKELNEYLDKF 150 (289)
T ss_pred HHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHH--------------------cCCcHHHHHHHHHHHHHh
Confidence 467778888888888888888888888888887744333333 377778999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHH
Q 029199 81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHN--DQDRAATYYERAVHASPEDSHVHA 158 (197)
Q Consensus 81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~--~~~~A~~~~~~al~~~p~~~~~~~ 158 (197)
|+|.++|..++.+|.. .|+|.+|.-||++.+=+.|.+|.....+|.+++.+|+ +++-|.++|.++++++|.+...++
T Consensus 151 ~~D~EAW~eLaeiY~~-~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 151 MNDQEAWHELAEIYLS-EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred cCcHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 9999999999988887 8999999999999999999999999999998888776 255788999999999998888887
Q ss_pred HHHHHHHHc
Q 029199 159 SYAGFLWET 167 (197)
Q Consensus 159 ~la~~~~~~ 167 (197)
.+-.|-..+
T Consensus 230 GI~lc~~~l 238 (289)
T KOG3060|consen 230 GIYLCGSAL 238 (289)
T ss_pred HHHHHHHHH
Confidence 766654443
No 53
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.44 E-value=7e-13 Score=84.93 Aligned_cols=69 Identities=28% Similarity=0.404 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 029199 82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASP 151 (197)
Q Consensus 82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p 151 (197)
+++.+|..+|.+++. .|++++|+.+|+++++++|+++.+++++|.++..+++++++|+++++++++++|
T Consensus 1 e~a~~~~~~g~~~~~-~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQ-QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 367899999988888 999999999999999999999999999999999987338999999999999998
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=4.2e-13 Score=114.57 Aligned_cols=169 Identities=20% Similarity=0.217 Sum_probs=141.0
Q ss_pred HHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC-------------CCCCCC-CCCcccCCCCCHHHHHHHHH
Q 029199 9 EVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG-------------GTGGGG-SGFYPAGSGGDSQGVEEYYK 74 (197)
Q Consensus 9 ~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~-------------~~~~~~-~~~~~~~~~g~~~~A~~~~~ 74 (197)
-++..+|-.-|+++--.+|.=.+.|++-|..+..-|--+. |.--|. +.+..++..++++.|.+.|.
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 3677788888888888888888999998888765442111 111222 34667788899999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 029199 75 KMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA----DPGD---GEILSQYAKLVWELHNDQDRAATYYERAV 147 (197)
Q Consensus 75 ~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l----~P~~---~~~~~~lg~~l~~~~~~~~~A~~~~~~al 147 (197)
+|+.+.|++|.++..+|.+.|. .+.+.+|..+|+.++.. .+.. ...+.|+|.++.++++ +++|+.+|+++|
T Consensus 405 ~A~ai~P~Dplv~~Elgvvay~-~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~-~~eAI~~~q~aL 482 (611)
T KOG1173|consen 405 QALAIAPSDPLVLHELGVVAYT-YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK-YEEAIDYYQKAL 482 (611)
T ss_pred HHHhcCCCcchhhhhhhheeeh-HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh-HHHHHHHHHHHH
Confidence 9999999999999999977776 89999999999999933 2222 3458999999999997 899999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 148 HASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 148 ~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
.+.|.++.++...|.++..+|+++.|++.|.+
T Consensus 483 ~l~~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 483 LLSPKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred HcCCCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 99999999999999999999999999999887
No 55
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.41 E-value=1.7e-12 Score=116.72 Aligned_cols=134 Identities=12% Similarity=-0.017 Sum_probs=122.1
Q ss_pred cchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCC
Q 029199 4 TALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGN 83 (197)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~ 83 (197)
-+..+-|+..||+..+..+.+..|++...+...+..+-.. +++++|+..+++++..+|++
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~--------------------~~~eeA~~~~~~~l~~~p~~ 153 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQ--------------------QGIEAGRAEIELYFSGGSSS 153 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHhhcCCCC
Confidence 3556778889999999999999999999999999999884 99999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 029199 84 PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHAS 159 (197)
Q Consensus 84 ~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 159 (197)
+.+++.+|.++.. .|++++|+.+|+++++.+|+++.++.++|.++...|+ .++|...|+++++...+-...+.+
T Consensus 154 ~~~~~~~a~~l~~-~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~-~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 154 AREILLEAKSWDE-IGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA-LWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHHHHHHHH-hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhCcchHHHHH
Confidence 9999999988777 9999999999999999999999999999999999885 999999999999998765555433
No 56
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.40 E-value=5.6e-13 Score=110.95 Aligned_cols=159 Identities=18% Similarity=0.028 Sum_probs=117.6
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|.++-..+++.+|+..+...++..|.++..+.. ++.+...|. ..+....+.+.+......+|.
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~ 112 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGD----------------FSGMRDHVARVLPLWAPENPD 112 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcc----------------cccCchhHHHHHhccCcCCCC
Confidence 344555677888888888888888888866553 333322211 024455566666555566777
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHH
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS----HVHA 158 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~----~~~~ 158 (197)
...++..+|.++.. .|++++|+..++++++++|+++.++..+|.+++..|+ +++|+.++++++...|.++ ..+.
T Consensus 113 ~~~~~~~~a~~~~~-~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~-~~eA~~~l~~~l~~~~~~~~~~~~~~~ 190 (355)
T cd05804 113 YWYLLGMLAFGLEE-AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR-FKEGIAFMESWRDTWDCSSMLRGHNWW 190 (355)
T ss_pred cHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHhhhhccCCCcchhHHHHH
Confidence 77777778866666 8999999999999999999999999999999888775 8999999999998876443 3466
Q ss_pred HHHHHHHHcCCccccccCCCcc
Q 029199 159 SYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 159 ~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.++.++..+|++++|...+++.
T Consensus 191 ~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 191 HLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 7899999999999988777764
No 57
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.40 E-value=2.4e-12 Score=101.05 Aligned_cols=146 Identities=14% Similarity=0.086 Sum_probs=124.9
Q ss_pred HHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199 11 KVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNY 90 (197)
Q Consensus 11 ~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l 90 (197)
+...++..+-...+++|++..+ ....-.+.. .|+-+.+..+..+.+..+|.+..++..+
T Consensus 48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~--------------------~G~a~~~l~~~~~~~~~~~~d~~ll~~~ 106 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYL--------------------RGDADSSLAVLQKSAIAYPKDRELLAAQ 106 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHh--------------------cccccchHHHHhhhhccCcccHHHHHHH
Confidence 3444555555556677877777 333333333 3778889999999999999999999889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 029199 91 AQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEED 170 (197)
Q Consensus 91 a~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 170 (197)
|..... .|++.+|+..++++..++|+|..+|..+|.+|-+.|+ +++|...|.+++++.|+++.+..|+|..+.-.|++
T Consensus 107 gk~~~~-~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr-~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 107 GKNQIR-NGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR-FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred HHHHHH-hcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC-hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence 977777 9999999999999999999999999999999999996 89999999999999999999999999999999999
Q ss_pred cccccCCCc
Q 029199 171 NDECDAPSE 179 (197)
Q Consensus 171 ~ea~~~~~~ 179 (197)
+.|+..+.+
T Consensus 185 ~~A~~lll~ 193 (257)
T COG5010 185 EDAETLLLP 193 (257)
T ss_pred HHHHHHHHH
Confidence 999877766
No 58
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.39 E-value=1.3e-11 Score=86.45 Aligned_cols=94 Identities=14% Similarity=0.236 Sum_probs=83.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCH
Q 029199 63 GGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD---GEILSQYAKLVWELHNDQ 136 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~l~~~~~~~ 136 (197)
.|++++|++.|+++++.+|++ +.+++.+|.+++. .|++++|+.+|++++..+|++ +.+++.+|.++...++ +
T Consensus 15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~ 92 (119)
T TIGR02795 15 AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGD-K 92 (119)
T ss_pred cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCC-h
Confidence 499999999999999999887 5688889988887 999999999999999998886 6789999999999885 8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHH
Q 029199 137 DRAATYYERAVHASPEDSHVHA 158 (197)
Q Consensus 137 ~~A~~~~~~al~~~p~~~~~~~ 158 (197)
++|+.+++++++..|+++.+..
T Consensus 93 ~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 93 EKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHHHHHHHCcCChhHHH
Confidence 9999999999999999887543
No 59
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=5.8e-12 Score=100.97 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=108.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHN--DQDRAA 140 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~--~~~~A~ 140 (197)
..+.+.-+.-++.-++.||+|++-|..||.++.. +|+++.|...|++|+++.|+|++++..+|.+++...+ +..++.
T Consensus 135 ~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~-~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 135 EQEMEALIARLETHLQQNPGDAEGWDLLGRAYMA-LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH-hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 3568899999999999999999999999988888 9999999999999999999999999999998876554 356999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 141 TYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 141 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
..|++++++||+|..+.+.+|..++++|++.+|....+.+
T Consensus 214 ~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~l 253 (287)
T COG4235 214 ALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQML 253 (287)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888876
No 60
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=5.8e-12 Score=107.10 Aligned_cols=110 Identities=17% Similarity=0.213 Sum_probs=103.1
Q ss_pred CcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 029199 57 FYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQ 136 (197)
Q Consensus 57 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~ 136 (197)
|..+...|+|..|+..|.++|+.+|+|+..+.|+|.++.. .+.+..|+...+++++++|+.+..|...|.++..+.+ |
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~k-L~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~-y 442 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLK-LGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKE-Y 442 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-H
Confidence 4456667999999999999999999999999999977777 9999999999999999999999999999999999996 9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 029199 137 DRAATYYERAVHASPEDSHVHASYAGFLWETE 168 (197)
Q Consensus 137 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 168 (197)
++|++.|+.+++.+|++.++...+..|+..+.
T Consensus 443 dkAleay~eale~dp~~~e~~~~~~rc~~a~~ 474 (539)
T KOG0548|consen 443 DKALEAYQEALELDPSNAEAIDGYRRCVEAQR 474 (539)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999998753
No 61
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.37 E-value=9.5e-12 Score=104.95 Aligned_cols=114 Identities=18% Similarity=0.220 Sum_probs=107.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
.|++++|++.++.+++..|+|+..+-..+.++.. .++.++|.+.+++++.++|+.+..+.++|.+|.+.|+ +++|+..
T Consensus 319 ~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~-~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~-~~eai~~ 396 (484)
T COG4783 319 AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLE-ANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGK-PQEAIRI 396 (484)
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCC-hHHHHHH
Confidence 5999999999999999999999999999988888 9999999999999999999999999999999999775 9999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCC
Q 029199 143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAPS 178 (197)
Q Consensus 143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~ 178 (197)
+.+.+..+|+++..|..++..|..+|+..++.....
T Consensus 397 L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 397 LNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred HHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH
Confidence 999999999999999999999999999988754443
No 62
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.35 E-value=2.6e-11 Score=91.55 Aligned_cols=120 Identities=20% Similarity=0.310 Sum_probs=97.1
Q ss_pred CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHH
Q 029199 26 GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLP 102 (197)
Q Consensus 26 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~ 102 (197)
.+..+..++..|..+.. .|++++|+.+|++++++.|+. ..++.++|.++.. .|+++
T Consensus 31 ~~~~a~~~~~lg~~~~~--------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g~~~ 89 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQA--------------------DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NGEHD 89 (172)
T ss_pred HhhhHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHH
Confidence 44566677777777655 499999999999999988764 4689999977777 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 029199 103 KAEEYYSRAILADPGDGEILSQYAKLVWELHND-------------QDRAATYYERAVHASPEDSHVHASYAGFLWETEE 169 (197)
Q Consensus 103 ~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~-------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 169 (197)
+|+..|+++++.+|+++..+.++|.++...++. +++|+++++++++.+|++ +...+..+...|+
T Consensus 90 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 90 KALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 999999999999999999999999998886631 578888999999989887 4455555555554
No 63
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1e-12 Score=108.82 Aligned_cols=154 Identities=14% Similarity=0.085 Sum_probs=132.1
Q ss_pred chhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCH
Q 029199 5 ALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNP 84 (197)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~ 84 (197)
.|.-.+++.+|+.+-...++.++.+.+.++.+|+.+.. .++.+.|+..|+++|+++|++.
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy--------------------~~~~~ka~~hf~qal~ldpdh~ 237 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYY--------------------NDNADKAINHFQQALRLDPDHQ 237 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhccccccc--------------------ccchHHHHHHHhhhhccChhhh
Confidence 34445555566666666667788888888888877766 4899999999999999999984
Q ss_pred ------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199 85 ------------LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG----EILSQYAKLVWELHNDQDRAATYYERAVH 148 (197)
Q Consensus 85 ------------~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~----~~~~~lg~~l~~~~~~~~~A~~~~~~al~ 148 (197)
..|...|+-.++ .|++.+|.++|..+|.++|+|. -.++|++.+...+|+ ..+|+.-++.++.
T Consensus 238 ~sk~~~~~~k~le~~k~~gN~~fk-~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr-l~eaisdc~~Al~ 315 (486)
T KOG0550|consen 238 KSKSASMMPKKLEVKKERGNDAFK-NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR-LREAISDCNEALK 315 (486)
T ss_pred hHHhHhhhHHHHHHHHhhhhhHhh-ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC-chhhhhhhhhhhh
Confidence 357778888888 9999999999999999999765 568899999999998 7999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 149 ASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 149 ~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
++|....++...|.|+..++++++|+++|+.+
T Consensus 316 iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 316 IDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998885
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=2.3e-12 Score=104.34 Aligned_cols=173 Identities=9% Similarity=0.014 Sum_probs=130.7
Q ss_pred hhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCC------CCcccCCCCCHHHHHH
Q 029199 6 LSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGS------GFYPAGSGGDSQGVEE 71 (197)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~------~~~~~~~~g~~~~A~~ 71 (197)
|..-.+++.|+..+..+++..|.+..+.+...-.....+.++. ....|.+ .+..+.+.++.+-|+.
T Consensus 266 Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alr 345 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALR 345 (478)
T ss_pred HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHH
Confidence 3334455555666666666666555554443333332222111 0112222 2335566799999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199 72 YYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD--P-GDGEILSQYAKLVWELHNDQDRAATYYERAVH 148 (197)
Q Consensus 72 ~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~--P-~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~ 148 (197)
+|++.+++--.+++.+.|+|.+++. .++++-++.+|++|+..- | .-.++|+|+|.+....| |+.-|..+|+-+|.
T Consensus 346 yYRRiLqmG~~speLf~NigLCC~y-aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iG-D~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 346 YYRRILQMGAQSPELFCNIGLCCLY-AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIG-DFNLAKRCFRLALT 423 (478)
T ss_pred HHHHHHHhcCCChHHHhhHHHHHHh-hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEecc-chHHHHHHHHHHhc
Confidence 9999999999999999999977776 899999999999999874 3 34589999999999988 69999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 149 ASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 149 ~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.||++.+++.|+|.+-.+.|+.++|...++..
T Consensus 424 ~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 424 SDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 99999999999999999999999998777764
No 65
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.34 E-value=5.8e-12 Score=79.74 Aligned_cols=64 Identities=28% Similarity=0.507 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 029199 89 NYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS 154 (197)
Q Consensus 89 ~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~ 154 (197)
.+|..++. .|++++|+.+|+++++.+|+++.+++.+|.++...|+ +++|+.+|+++++++|++|
T Consensus 2 ~~a~~~~~-~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQ-QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGR-YDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHH-CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCCC
Confidence 57777787 9999999999999999999999999999999999885 9999999999999999986
No 66
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=3.1e-11 Score=94.59 Aligned_cols=150 Identities=14% Similarity=0.098 Sum_probs=128.4
Q ss_pred HHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199 8 EEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFL 87 (197)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 87 (197)
+-++.-.|-.+.+..-.+.|+++.+.--.|+-+.. .|++++|+++|+..++-||.|..++
T Consensus 64 d~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa--------------------~~~~~~A~e~y~~lL~ddpt~~v~~ 123 (289)
T KOG3060|consen 64 DTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEA--------------------TGNYKEAIEYYESLLEDDPTDTVIR 123 (289)
T ss_pred HhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHH--------------------hhchhhHHHHHHHHhccCcchhHHH
Confidence 34556666677777677788888888888888777 5999999999999999999999998
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 029199 88 SNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWET 167 (197)
Q Consensus 88 ~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 167 (197)
...-.++.. +|+.-+|++.+..-++..|.|+++|..++.+|...+ +|++|.-||+..+-+.|.++..+..+|.+++-+
T Consensus 124 KRKlAilka-~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~-~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~ 201 (289)
T KOG3060|consen 124 KRKLAILKA-QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG-DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQ 201 (289)
T ss_pred HHHHHHHHH-cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 865546665 999999999999999999999999999999999988 599999999999999999999999999999988
Q ss_pred CCccc---cccCCCc
Q 029199 168 EEDND---ECDAPSE 179 (197)
Q Consensus 168 g~~~e---a~~~~~~ 179 (197)
|-.+. +...|.+
T Consensus 202 gg~eN~~~arkyy~~ 216 (289)
T KOG3060|consen 202 GGAENLELARKYYER 216 (289)
T ss_pred hhHHHHHHHHHHHHH
Confidence 75332 4555555
No 67
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.31 E-value=7.9e-12 Score=104.88 Aligned_cols=110 Identities=10% Similarity=0.006 Sum_probs=100.3
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|..+-..+++.+|+..|..+++.+|+++..++.+|..+..+ |++++|+..++++++++|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~--------------------g~~~eAl~~~~~Al~l~P~ 68 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKL--------------------GNFTEAVADANKAIELDPS 68 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHhCcC
Confidence 34455678899999999999999999999999999998774 9999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELH 133 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~ 133 (197)
++.+|+.+|.+++. .|++++|+..|+++++++|+++.+...++.+...+.
T Consensus 69 ~~~a~~~lg~~~~~-lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 69 LAKAYLRKGTACMK-LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred CHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999988887 999999999999999999999999999988866654
No 68
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.30 E-value=1.1e-10 Score=87.73 Aligned_cols=103 Identities=21% Similarity=0.252 Sum_probs=79.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------HH
Q 029199 63 GGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVW-------EL 132 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~-------~~ 132 (197)
.|++++|+..|++++.+.|+. +.+|.++|.++.. .|++++|+.+|+++++++|.++..+.++|.++. ..
T Consensus 48 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~ 126 (168)
T CHL00033 48 EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-NGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQ 126 (168)
T ss_pred cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHc
Confidence 489999999999999887763 4588999967666 999999999999999999999999999998888 54
Q ss_pred cCCHH-------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 029199 133 HNDQD-------RAATYYERAVHASPEDSHVHASYAGFLWETEED 170 (197)
Q Consensus 133 ~~~~~-------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 170 (197)
| +++ +|+.+|++++..+|++. ...+..+..+|++
T Consensus 127 g-~~~~A~~~~~~a~~~~~~a~~~~p~~~---~~~~~~~~~~~~~ 167 (168)
T CHL00033 127 G-DSEIAEAWFDQAAEYWKQAIALAPGNY---IEAQNWLKITGRF 167 (168)
T ss_pred c-cHHHHHHHHHHHHHHHHHHHHhCcccH---HHHHHHHHHhcCC
Confidence 4 344 66777777888887654 3334444445554
No 69
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.29 E-value=1.1e-11 Score=113.35 Aligned_cols=179 Identities=11% Similarity=-0.063 Sum_probs=134.3
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC------CCCCCCCCCc--------ccCCCCCHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG------GTGGGGSGFY--------PAGSGGDSQG 68 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~--------~~~~~g~~~~ 68 (197)
+++..+.|++..|+..|..+++.+|++++........+...|.... ....|.+... .+...|++++
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4567788999999999999999999996332222222223343322 1224433321 3445699999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199 69 VEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVH 148 (197)
Q Consensus 69 A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~ 148 (197)
|++.|+++++.+|+++.++..++.++.. .++.++|++.+++++..+|.+... ..++.++...++ ..+|++.|+++++
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~-~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~-~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQAD-AGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR-NYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhh-cCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch-HHHHHHHHHHHHH
Confidence 9999999999999999999988766665 899999999999999999987665 445555555554 5579999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCccccccCCCcccccc
Q 029199 149 ASPEDSHVHASYAGFLWETEEDNDECDAPSELDSNT 184 (197)
Q Consensus 149 ~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~~~~ 184 (197)
.+|++..++..+..++.+.|-..-|.+...+-|.+-
T Consensus 198 ~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f 233 (822)
T PRK14574 198 LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV 233 (822)
T ss_pred hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc
Confidence 999999999999999999998888887777766433
No 70
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.28 E-value=1.2e-11 Score=82.47 Aligned_cols=81 Identities=27% Similarity=0.444 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPG--NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAA 140 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~--~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~ 140 (197)
.|+++.|+..|+++++.+|. +..+++.+|.+++. .|++++|+..+++ ++.+|.++..++.+|.+++++|+ +++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~-y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK-YEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT--HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC-HHHHH
Confidence 37788888888888888884 45667778888887 8888888888888 77788888888888888888885 88888
Q ss_pred HHHHHH
Q 029199 141 TYYERA 146 (197)
Q Consensus 141 ~~~~~a 146 (197)
++|+++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 888765
No 71
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.28 E-value=2.5e-11 Score=79.71 Aligned_cols=91 Identities=21% Similarity=0.356 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199 87 LSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWE 166 (197)
Q Consensus 87 ~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 166 (197)
++++|.+++. .|++++|+..++++++..|+++.++..+|.++...++ +++|.++|++++...|.++.++..++.++..
T Consensus 3 ~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYK-LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK-YEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHH-HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 4455545444 5666666666666666666666666666666655553 5666666666666666666666666666666
Q ss_pred cCCccccccCCCc
Q 029199 167 TEEDNDECDAPSE 179 (197)
Q Consensus 167 ~g~~~ea~~~~~~ 179 (197)
.|+++++...+.+
T Consensus 81 ~~~~~~a~~~~~~ 93 (100)
T cd00189 81 LGKYEEALEAYEK 93 (100)
T ss_pred HHhHHHHHHHHHH
Confidence 6666655544443
No 72
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.28 E-value=8.3e-11 Score=77.14 Aligned_cols=88 Identities=27% Similarity=0.391 Sum_probs=82.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
.|++++|+..++++++..|++..++..+|.++.. .+++++|+.+|++++...|.++.++..+|.++...++ +++|..+
T Consensus 13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~ 90 (100)
T cd00189 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK-YEEALEA 90 (100)
T ss_pred HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh-HHHHHHH
Confidence 4899999999999999999999999999988877 8999999999999999999999999999999999885 9999999
Q ss_pred HHHHHHhCCC
Q 029199 143 YERAVHASPE 152 (197)
Q Consensus 143 ~~~al~~~p~ 152 (197)
+.++++.+|+
T Consensus 91 ~~~~~~~~~~ 100 (100)
T cd00189 91 YEKALELDPN 100 (100)
T ss_pred HHHHHccCCC
Confidence 9999998874
No 73
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=5.8e-11 Score=101.68 Aligned_cols=102 Identities=18% Similarity=0.229 Sum_probs=89.1
Q ss_pred CCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 029199 63 GGDSQGVEEYYKKMVEE-------NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHND 135 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~-------~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~ 135 (197)
.+.+.+|..+|+.++.. .+.....+.|||-++.+ .+++++|+.+|+++|.+.|.++.++..+|.++..+|+
T Consensus 427 ~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk-l~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn- 504 (611)
T KOG1173|consen 427 YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK-LNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN- 504 (611)
T ss_pred HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH-HhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC-
Confidence 58999999999999832 22355679999977666 9999999999999999999999999999999999996
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199 136 QDRAATYYERAVHASPEDSHVHASYAGFLWE 166 (197)
Q Consensus 136 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 166 (197)
++.|+++|.++|.++|+|..+-.-|+.+...
T Consensus 505 ld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 505 LDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred hHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 9999999999999999998777777766554
No 74
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.27 E-value=3e-11 Score=103.14 Aligned_cols=114 Identities=11% Similarity=0.021 Sum_probs=96.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHcCCHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFL--SNYAQFLYQSKQDLPKAEEYYSRAILADPGDG--EILSQYAKLVWELHNDQDR 138 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~--~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~lg~~l~~~~~~~~~ 138 (197)
.|++++|.+.++++++..|++.... .-....... .++.+++++.++++++.+|+|+ .++..+|++++..|+ +++
T Consensus 276 ~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~-~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~-~~~ 353 (409)
T TIGR00540 276 CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK-PEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGE-FIE 353 (409)
T ss_pred CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC-CCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHccc-HHH
Confidence 4999999999999999999998631 112212233 5788999999999999999999 999999999999885 999
Q ss_pred HHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 139 AATYYE--RAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 139 A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
|.++|+ ++++.+|++.. +..+|.++.++|+.++|.+.+++
T Consensus 354 A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 354 AADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999 68888897655 66999999999999999888876
No 75
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.27 E-value=2.9e-11 Score=106.49 Aligned_cols=120 Identities=14% Similarity=0.126 Sum_probs=110.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 029199 59 PAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDR 138 (197)
Q Consensus 59 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~ 138 (197)
.+...++.++|.-|+.++-+++|-.+..|+..|.++.. .|++.+|.+.|.-|+.+||+++.....+|.++.+.|+ ..-
T Consensus 659 ~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~-~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~-~~l 736 (799)
T KOG4162|consen 659 LFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEV-KGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS-PRL 736 (799)
T ss_pred HHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHH-HHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-cch
Confidence 33445888999999999999999999999999966665 9999999999999999999999999999999999885 566
Q ss_pred HHH--HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 139 AAT--YYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 139 A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
|.. .+..+++++|.|+++|+.+|.++..+|+.++|.+.|+..
T Consensus 737 a~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 737 AEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 777 999999999999999999999999999999999999884
No 76
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.27 E-value=5.4e-11 Score=106.27 Aligned_cols=116 Identities=23% Similarity=0.345 Sum_probs=110.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
.|++++|...+.++++++|.++.+|+.||.++-. .|+..++....-.|-.++|++.+.|..++....++|. +++|.-|
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEq-rGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~-i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQ-RGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN-INQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH-cccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc-HHHHHHH
Confidence 4999999999999999999999999999966665 9999999999999999999999999999999888885 9999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
|.+|++.+|++....+..+.++.++|+...|.+.|.++
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l 267 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQL 267 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 99999999999999999999999999999998888875
No 77
>PRK11906 transcriptional regulator; Provisional
Probab=99.26 E-value=6.1e-11 Score=100.39 Aligned_cols=125 Identities=12% Similarity=-0.003 Sum_probs=111.2
Q ss_pred CCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 029199 64 GDSQGVEEYYKKMV---EENPGNPLFLSNYAQFLYQS--------KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWEL 132 (197)
Q Consensus 64 g~~~~A~~~~~~al---~~~P~~~~~~~~la~~l~~~--------~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~ 132 (197)
-..+.|+.+|.+|+ .++|+++.+|..++.+++.. .....+|....++|++++|.|+.++..+|.++...
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 45688999999999 99999999999998766652 12567889999999999999999999999999998
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcccccccchhhhh
Q 029199 133 HNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELDSNTLQIGHAA 191 (197)
Q Consensus 133 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~~~~~~~~~~~ 191 (197)
++ ++.|...|++|+.++|+.+.+|+..|++....|+.++|.+.+++ .+.++|.+-.
T Consensus 352 ~~-~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~--alrLsP~~~~ 407 (458)
T PRK11906 352 GQ-AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK--SLQLEPRRRK 407 (458)
T ss_pred cc-hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH--HhccCchhhH
Confidence 86 99999999999999999999999999999999999999999998 6777786543
No 78
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.24 E-value=7.7e-11 Score=88.57 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGN--PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD---GEILSQYAKLVWELHNDQDR 138 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~--~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~l~~~~~~~~~ 138 (197)
+++..+...+.+.++.++.+ ...|+++|.++.. .|++++|+..|++++.+.|+. +.++.++|.++...|+ +++
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~-~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~-~~e 90 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQS-EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE-HTK 90 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC-HHH
Confidence 44666677776666777776 5677899977776 999999999999999997763 4689999999999885 999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH-------HcCCccccccCC
Q 029199 139 AATYYERAVHASPEDSHVHASYAGFLW-------ETEEDNDECDAP 177 (197)
Q Consensus 139 A~~~~~~al~~~p~~~~~~~~la~~~~-------~~g~~~ea~~~~ 177 (197)
|+.+|+++++++|.+...+.++|.++. .+|+++++...+
T Consensus 91 A~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 91 ALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHH
Confidence 999999999999999999999999999 777777554333
No 79
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.24 E-value=8.4e-11 Score=82.33 Aligned_cols=95 Identities=11% Similarity=0.050 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 029199 84 PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD---GEILSQYAKLVWELHNDQDRAATYYERAVHASPED---SHVH 157 (197)
Q Consensus 84 ~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~---~~~~ 157 (197)
+..++.+|..+.. .|++++|+..|+++++.+|++ +.+++.+|.+++..++ +++|+.+|++++..+|++ +.++
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 2 EEAYYDAALLVLK-AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK-YADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred cHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHCCCCCcccHHH
Confidence 4578889988887 999999999999999999987 5789999999999885 999999999999999885 6789
Q ss_pred HHHHHHHHHcCCccccccCCCcc
Q 029199 158 ASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 158 ~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+.+|.++..+|++++|...+.++
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHH
Confidence 99999999999999999888875
No 80
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=4e-12 Score=102.94 Aligned_cols=124 Identities=15% Similarity=0.109 Sum_probs=107.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
++++++|+++|+.+++++|.+.++....|.-++. .++.+-|+.+|++.|+.--.+|+..+|+|.|++-.+ ++|-++.+
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY-~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaq-Q~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY-DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ-QIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeecccc-CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc-chhhhHHH
Confidence 5899999999999999999999998888866666 899999999999999999999999999999988866 59999999
Q ss_pred HHHHHHhC--C-CCHHHHHHHHHHHHHcCCccccccCCCcccccccchhhh
Q 029199 143 YERAVHAS--P-EDSHVHASYAGFLWETEEDNDECDAPSELDSNTLQIGHA 190 (197)
Q Consensus 143 ~~~al~~~--p-~~~~~~~~la~~~~~~g~~~ea~~~~~~~~~~~~~~~~~ 190 (197)
|++|+..- | .-.++|||+|.+....|++.-|.+.|+- .+..++-|+
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrl--aL~~d~~h~ 429 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRL--ALTSDAQHG 429 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHH--HhccCcchH
Confidence 99999774 3 3568999999999999999999888876 333344343
No 81
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=3.8e-11 Score=102.21 Aligned_cols=115 Identities=18% Similarity=0.160 Sum_probs=106.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
....+++++..+...-++|.-..--..-|+.++. .|+|..|+..|.+|+..+|+|+..+.|+|.+|..++. +..|+..
T Consensus 337 lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk-~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~-~~~aL~D 414 (539)
T KOG0548|consen 337 LKEAEKALKEAERKAYINPEKAEEEREKGNEAFK-KGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGE-YPEALKD 414 (539)
T ss_pred HHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhh-HHHHHHH
Confidence 3667777777777778889888888888989898 9999999999999999999999999999999999996 9999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
.+++++++|++...|..-|.++..+.+|++|.+.|+.
T Consensus 415 a~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 415 AKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988887
No 82
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.6e-10 Score=92.71 Aligned_cols=122 Identities=20% Similarity=0.168 Sum_probs=104.8
Q ss_pred HHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199 12 VMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYA 91 (197)
Q Consensus 12 ~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la 91 (197)
+.+-+..+.-.+..+|+|++-|.-.|-..-. .|++..|...|.+++++.|++++++..+|
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~--------------------~~~~~~A~~AY~~A~rL~g~n~~~~~g~a 197 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMA--------------------LGRASDALLAYRNALRLAGDNPEILLGLA 197 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHH--------------------hcchhHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4444555555667799999988887776555 49999999999999999999999999999
Q ss_pred HHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 029199 92 QFLYQSKQ--DLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS 154 (197)
Q Consensus 92 ~~l~~~~g--~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~ 154 (197)
.+++...| ...++...+++++++||.|+.+.+.+|..+++.| ++++|...++..++..|.+.
T Consensus 198 eaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g-~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 198 EALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQG-DYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhcCCCCC
Confidence 88887454 5688999999999999999999999999999988 59999999999999987654
No 83
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.21 E-value=3e-11 Score=77.30 Aligned_cols=67 Identities=25% Similarity=0.314 Sum_probs=60.5
Q ss_pred ChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-CHHHHHHH
Q 029199 29 GQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQ-DLPKAEEY 107 (197)
Q Consensus 29 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g-~~~~A~~~ 107 (197)
++..|...|..+-. .|++++|+.+|+++++++|+++.+|+++|.++.. +| ++.+|+..
T Consensus 2 ~a~~~~~~g~~~~~--------------------~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~-~~~~~~~A~~~ 60 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQ--------------------QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK-LGKDYEEAIED 60 (69)
T ss_dssp SHHHHHHHHHHHHH--------------------TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-TTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCccHHHHHHH
Confidence 56777777777665 4999999999999999999999999999988777 88 79999999
Q ss_pred HHHHHHhCC
Q 029199 108 YSRAILADP 116 (197)
Q Consensus 108 ~~~al~l~P 116 (197)
|+++++++|
T Consensus 61 ~~~al~l~P 69 (69)
T PF13414_consen 61 FEKALKLDP 69 (69)
T ss_dssp HHHHHHHST
T ss_pred HHHHHHcCc
Confidence 999999998
No 84
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.21 E-value=6.4e-11 Score=106.54 Aligned_cols=140 Identities=16% Similarity=0.129 Sum_probs=126.8
Q ss_pred HHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199 8 EEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFL 87 (197)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 87 (197)
+-.....|+..|++++..+|.+.-+-...|+.+..+ |++.+|...|.++.+--.+++.+|
T Consensus 624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~k--------------------g~~~~A~dIFsqVrEa~~~~~dv~ 683 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEK--------------------GRFSEARDIFSQVREATSDFEDVW 683 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhc--------------------cCchHHHHHHHHHHHHHhhCCcee
Confidence 456788999999999999999987777777777774 999999999999988877899999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 029199 88 SNYAQFLYQSKQDLPKAEEYYSRAILAD--PGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLW 165 (197)
Q Consensus 88 ~~la~~l~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 165 (197)
.|+|.++.. +|+|..|++.|+.+++.. .+++.++..+|.++++.++ +.+|.+++.+|+...|.|+.+.+|+|.++.
T Consensus 684 lNlah~~~e-~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~-~~eak~~ll~a~~~~p~~~~v~FN~a~v~k 761 (1018)
T KOG2002|consen 684 LNLAHCYVE-QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK-LQEAKEALLKARHLAPSNTSVKFNLALVLK 761 (1018)
T ss_pred eeHHHHHHH-HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhCCccchHHhHHHHHHH
Confidence 999999998 999999999999999864 4789999999999999896 999999999999999999999999999988
Q ss_pred HcCC
Q 029199 166 ETEE 169 (197)
Q Consensus 166 ~~g~ 169 (197)
++..
T Consensus 762 kla~ 765 (1018)
T KOG2002|consen 762 KLAE 765 (1018)
T ss_pred HHHH
Confidence 7753
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.21 E-value=3.5e-11 Score=100.15 Aligned_cols=116 Identities=16% Similarity=0.065 Sum_probs=96.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQ---SKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRA 139 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~---~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A 139 (197)
.|++++|.+.++++++.+|++..++.. +..++. ..++...+.+.++.....+|....++..+|.++...|+ +++|
T Consensus 56 ~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~-~~~A 133 (355)
T cd05804 56 AGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ-YDRA 133 (355)
T ss_pred cCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC-HHHH
Confidence 599999999999999999999988774 323332 13455555555555446778888898999999999885 9999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 140 ATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 140 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+..++++++++|+++.++..+|.++.+.|++++|+..+++.
T Consensus 134 ~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~ 174 (355)
T cd05804 134 EEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESW 174 (355)
T ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 99999999999999999999999999999999998888774
No 86
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=2.9e-10 Score=95.78 Aligned_cols=127 Identities=18% Similarity=0.167 Sum_probs=110.5
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 029199 56 GFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHND 135 (197)
Q Consensus 56 ~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~ 135 (197)
.+......|++++|...|++++.-+....++++|.|.. +..+|+.++|+++|-+.-.+--++.++++.++.+|-.+. +
T Consensus 496 kgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt-~e~~~~ldeald~f~klh~il~nn~evl~qianiye~le-d 573 (840)
T KOG2003|consen 496 KGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLT-AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLE-D 573 (840)
T ss_pred CCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhccc-HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh-C
Confidence 34444456999999999999999999999999999944 445999999999999988888899999999999988887 5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc----cCCCcccccc
Q 029199 136 QDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDEC----DAPSELDSNT 184 (197)
Q Consensus 136 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~----~~~~~~~~~~ 184 (197)
..+|+++|.++..+-|++|.++..+|.+|.+.|+-.+|. +.|+-+|+..
T Consensus 574 ~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~ni 626 (840)
T KOG2003|consen 574 PAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNI 626 (840)
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcch
Confidence 899999999999999999999999999999999988883 4455555444
No 87
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.19 E-value=3.3e-10 Score=103.76 Aligned_cols=116 Identities=13% Similarity=0.113 Sum_probs=96.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
.|+++.|+..|+++++.+|+++.....+..++.. .|+.++|+.++++++.-+|.+......+|.++...| ++++|++.
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~-~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g-dyd~Aiel 124 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGW-AGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEK-RWDQALAL 124 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHH-cCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 5999999999999999999996544477756666 899999999999999444444555555577888867 59999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
|+++++.+|+++.++..++.++.+.++.++|...++++
T Consensus 125 y~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l 162 (822)
T PRK14574 125 WQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATEL 162 (822)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 99999999999999999999999999999998887775
No 88
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.18 E-value=1.9e-11 Score=107.23 Aligned_cols=153 Identities=14% Similarity=0.061 Sum_probs=128.3
Q ss_pred CCCChhhHHhhhcccCCCCCCCC-C--C-----CCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 029199 26 GTVGQEMYLAKGLGVGGRGGRGG-G--T-----GGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQS 97 (197)
Q Consensus 26 ~p~~~~~~~~~g~~~~~~~~~~~-~--~-----~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~ 97 (197)
.|++|-+|+..|-.+..-.-++. + + ...-..+......+++.++.++++..++++|-....|+++|.+..+
T Consensus 453 k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq- 531 (777)
T KOG1128|consen 453 KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ- 531 (777)
T ss_pred CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHH-
Confidence 78899999998876543211111 0 0 0001112223446999999999999999999999999999977776
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCC
Q 029199 98 KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAP 177 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~ 177 (197)
.++++.|..+|.+++.++|++.++|+|++..|..++. ..+|...+..|++.+-.++.+|-|+-.+..+.|.+++|...+
T Consensus 532 lek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~-k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 532 LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK-KKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred HhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh-hHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHH
Confidence 9999999999999999999999999999999999996 799999999999999999999999999999999999999888
Q ss_pred Ccc
Q 029199 178 SEL 180 (197)
Q Consensus 178 ~~~ 180 (197)
+++
T Consensus 611 ~rl 613 (777)
T KOG1128|consen 611 HRL 613 (777)
T ss_pred HHH
Confidence 886
No 89
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.18 E-value=1.3e-11 Score=82.28 Aligned_cols=80 Identities=16% Similarity=0.297 Sum_probs=71.3
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 029199 98 KQDLPKAEEYYSRAILADPG--DGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECD 175 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~l~P~--~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~ 175 (197)
+|+++.|+..|+++++.+|. +..+++.+|.++++.|+ +++|+..+++ +..+|.++..++.+|.|+.++|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~-y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGK-YEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTH-HHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCC-HHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 68999999999999999995 57788889999999885 9999999999 88899999999999999999999999988
Q ss_pred CCCc
Q 029199 176 APSE 179 (197)
Q Consensus 176 ~~~~ 179 (197)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7653
No 90
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.18 E-value=1.5e-10 Score=100.42 Aligned_cols=151 Identities=14% Similarity=0.094 Sum_probs=133.7
Q ss_pred HHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199 8 EEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFL 87 (197)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 87 (197)
|.+++..-+.-.+..++..|..++.+..+|+.+..+ |+.++|..+...+++.|+.+...|
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~l--------------------g~~~ea~~~vr~glr~d~~S~vCw 78 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCL--------------------GKKEEAYELVRLGLRNDLKSHVCW 78 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcc--------------------cchHHHHHHHHHHhccCcccchhH
Confidence 345556666666666778999999999999998874 999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 029199 88 SNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWET 167 (197)
Q Consensus 88 ~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 167 (197)
.-+| ++++...+|++|+.||+.|+.++|+|..+|..++.+-.+++ +++-..+.-.+.++..|.+-..|..++..+...
T Consensus 79 Hv~g-l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmR-d~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 79 HVLG-LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMR-DYEGYLETRNQLLQLRPSQRASWIGFAVAQHLL 156 (700)
T ss_pred HHHH-HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 9999 55555899999999999999999999999999998888888 699999999999999999999999999999999
Q ss_pred CCccccccCCCcc
Q 029199 168 EEDNDECDAPSEL 180 (197)
Q Consensus 168 g~~~ea~~~~~~~ 180 (197)
|++..|....+++
T Consensus 157 g~y~~A~~il~ef 169 (700)
T KOG1156|consen 157 GEYKMALEILEEF 169 (700)
T ss_pred HHHHHHHHHHHHH
Confidence 9999997666654
No 91
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.17 E-value=5.8e-10 Score=94.22 Aligned_cols=119 Identities=17% Similarity=0.133 Sum_probs=106.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 029199 61 GSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAA 140 (197)
Q Consensus 61 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~ 140 (197)
...++++.|+..|++..+.+|+ +...++.++.. .++..+|++.+.++++.+|.+...+...+.++...++ ++.|+
T Consensus 180 ~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~-~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~-~~lAL 254 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDPE---VAVLLARVYLL-MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK-YELAL 254 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHh-cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-HHHHH
Confidence 4458999999999999999986 45557877777 8999999999999999999999999999999999775 89999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcccccc
Q 029199 141 TYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELDSNT 184 (197)
Q Consensus 141 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~~~~ 184 (197)
.+.++++.+.|++...|+.|+.+|..+|++++|...+-.+|-++
T Consensus 255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 255 EIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999999999999999999999999999987776666444
No 92
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.16 E-value=6.4e-11 Score=104.36 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=104.6
Q ss_pred HHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 14 EALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQF 93 (197)
Q Consensus 14 ~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~ 93 (197)
++--++..+-..+|.++..|+.+|..... .|++++|.+.|..++.+||+++.....+|.+
T Consensus 668 ~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~--------------------~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ 727 (799)
T KOG4162|consen 668 EARSCLLEASKIDPLSASVYYLRGLLLEV--------------------KGQLEEAKEAFLVALALDPDHVPSMTALAEL 727 (799)
T ss_pred HHHHHHHHHHhcchhhHHHHHHhhHHHHH--------------------HHhhHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 34334444455678888888888888766 4999999999999999999999999999988
Q ss_pred HHHhcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 029199 94 LYQSKQDLPKAEE--YYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSH 155 (197)
Q Consensus 94 l~~~~g~~~~A~~--~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~ 155 (197)
+.. .|+..-|.. .+..++++||.|+++|+.+|.++.+.| |.++|.+||..|+++.+++|.
T Consensus 728 lle-~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G-d~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 728 LLE-LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG-DSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHH-hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-chHHHHHHHHHHHhhccCCCc
Confidence 887 998888877 999999999999999999999999877 699999999999999998874
No 93
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.16 E-value=7.5e-10 Score=81.30 Aligned_cols=114 Identities=13% Similarity=0.184 Sum_probs=99.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCH
Q 029199 63 GGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD---GEILSQYAKLVWELHNDQ 136 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~l~~~~~~~ 136 (197)
.++...+.+.+++.++.+|+. ..+.+.+|.+++. .|++++|+..|++++...|+. +.+.+.++.++...++ +
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~-~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~-~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE-QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ-Y 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC-H
Confidence 488899999999999999999 5677789988888 999999999999999988766 4688899999999885 9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 137 DRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 137 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
++|+..++. +...+-.+.++..+|.++...|++++|...|+.
T Consensus 102 d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999977 344566778899999999999999999988764
No 94
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=3.6e-10 Score=93.82 Aligned_cols=114 Identities=15% Similarity=0.144 Sum_probs=100.1
Q ss_pred cccCCCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199 58 YPAGSGGDSQGVEEYYKKMVEENPGN---------------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEIL 122 (197)
Q Consensus 58 ~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~ 122 (197)
..+.+.|+|..|...|++++..-+.. ..++.|++.++.+ ++++.+|+..+.++|.++|+|.-++
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lK-l~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLK-LKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHh-hhhHHHHHHHHHHHHhcCCCchhHH
Confidence 35667799999999999998764321 3468899978777 9999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccc
Q 029199 123 SQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDE 173 (197)
Q Consensus 123 ~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea 173 (197)
+..|.++..++ +++.|+..|+++++++|+|-.+...+..|..+..++.+.
T Consensus 295 yRrG~A~l~~~-e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 295 YRRGQALLALG-EYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK 344 (397)
T ss_pred HHHHHHHHhhc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988 599999999999999999999999999888887766664
No 95
>PRK15331 chaperone protein SicA; Provisional
Probab=99.15 E-value=5.3e-10 Score=82.86 Aligned_cols=103 Identities=17% Similarity=0.136 Sum_probs=88.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 029199 61 GSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAA 140 (197)
Q Consensus 61 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~ 140 (197)
...|++++|...|+-+...+|.++..|..||.++.. ++++++|+..|..+..++++||...+..|.|+..+++ .++|+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~-~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-KKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK-AAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC-HHHHH
Confidence 446999999999999999999999999999977776 9999999999999999999999999999999999885 89999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199 141 TYYERAVHASPEDSHVHASYAGFLWE 166 (197)
Q Consensus 141 ~~~~~al~~~p~~~~~~~~la~~~~~ 166 (197)
.+|+.++. .|.+..+.-.-...+..
T Consensus 126 ~~f~~a~~-~~~~~~l~~~A~~~L~~ 150 (165)
T PRK15331 126 QCFELVNE-RTEDESLRAKALVYLEA 150 (165)
T ss_pred HHHHHHHh-CcchHHHHHHHHHHHHH
Confidence 99999988 57766655444444443
No 96
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.15 E-value=1.7e-10 Score=73.46 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=44.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199 98 KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG 162 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 162 (197)
.|++++|+..|+++++.+|+++.+++.+|.+++..|+ +++|.+.+++++..+|+++.++.-++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQ-YDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT--HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 5677777777777777777777777777777777663 777777777777777776666655554
No 97
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=8e-11 Score=97.74 Aligned_cols=180 Identities=15% Similarity=0.073 Sum_probs=142.4
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCCCc----------------
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSGFY---------------- 58 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~---------------- 58 (197)
|+.+-..-++-+||..++++++..|++++.|..+...+..+|.+.. ....|+....
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHH
Confidence 5666777889999999999999999999999888887766665322 1111111100
Q ss_pred ------------------------------------------ccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199 59 ------------------------------------------PAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQ 96 (197)
Q Consensus 59 ------------------------------------------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~ 96 (197)
-+...|++++|.+.--..+++++.+..+++..|.+++.
T Consensus 136 A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy 215 (486)
T KOG0550|consen 136 AEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYY 215 (486)
T ss_pred HHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccccccc
Confidence 11224888888888888999999999999999988887
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHH
Q 029199 97 SKQDLPKAEEYYSRAILADPGDGE------------ILSQYAKLVWELHNDQDRAATYYERAVHASPEDS----HVHASY 160 (197)
Q Consensus 97 ~~g~~~~A~~~~~~al~l~P~~~~------------~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l 160 (197)
..+.++|+.+|+++|.++|+... .|-..|.-.++.|+ +.+|.++|..+|.++|+|. ..|.|+
T Consensus 216 -~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~-y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 216 -NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGN-YRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred -ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccc-hhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 99999999999999999998764 45666777888775 9999999999999999854 568999
Q ss_pred HHHHHHcCCccccccCCCcccccc
Q 029199 161 AGFLWETEEDNDECDAPSELDSNT 184 (197)
Q Consensus 161 a~~~~~~g~~~ea~~~~~~~~~~~ 184 (197)
+.+..++|+..+|+.+-...-.|.
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~iD 317 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKID 317 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhcC
Confidence 999999999999976655543333
No 98
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.13 E-value=4.5e-10 Score=84.77 Aligned_cols=98 Identities=16% Similarity=0.185 Sum_probs=82.5
Q ss_pred HHHHHHHhCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029199 72 YYKKMVEENP--GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD---GEILSQYAKLVWELHNDQDRAATYYERA 146 (197)
Q Consensus 72 ~~~~al~~~P--~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~l~~~~~~~~~A~~~~~~a 146 (197)
.+...+.+++ ....+++++|..+.. .|++++|+.+|++++++.|+. +.++.++|.++...|+ +++|+.+|+++
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a 98 (172)
T PRK02603 21 LILKILPINKKAKEAFVYYRDGMSAQA-DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE-HDKALEYYHQA 98 (172)
T ss_pred HHHHHcccccHhhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Confidence 3444444443 456678899977776 999999999999999987764 4799999999999885 99999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCcc
Q 029199 147 VHASPEDSHVHASYAGFLWETEEDN 171 (197)
Q Consensus 147 l~~~p~~~~~~~~la~~~~~~g~~~ 171 (197)
++..|+++..+..+|.++..+|+..
T Consensus 99 l~~~p~~~~~~~~lg~~~~~~g~~~ 123 (172)
T PRK02603 99 LELNPKQPSALNNIAVIYHKRGEKA 123 (172)
T ss_pred HHhCcccHHHHHHHHHHHHHcCChH
Confidence 9999999999999999999998843
No 99
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.13 E-value=1.5e-10 Score=73.23 Aligned_cols=56 Identities=27% Similarity=0.469 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG 119 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~ 119 (197)
.|++++|++.|+++++.+|+++.+|+.+|.+++. +|++++|+..|+++++++|+||
T Consensus 10 ~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 10 QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-H
T ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCC
Confidence 5999999999999999999999999999988887 9999999999999999999987
No 100
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.13 E-value=5.6e-10 Score=95.05 Aligned_cols=130 Identities=9% Similarity=0.059 Sum_probs=111.9
Q ss_pred ccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH
Q 029199 24 ERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPK 103 (197)
Q Consensus 24 ~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~ 103 (197)
+..|+++++++..+..+..+ |+.++|.+.++++++. |.++.....++.+ . .++.++
T Consensus 257 ~~~~~~~~~~~~~A~~l~~~--------------------g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~-~~~~~~ 312 (398)
T PRK10747 257 RKTRHQVALQVAMAEHLIEC--------------------DDHDTAQQIILDGLKR-QYDERLVLLIPRL--K-TNNPEQ 312 (398)
T ss_pred HHHhCCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--c-CCChHH
Confidence 35677888888888777764 9999999999999995 5566655555532 3 589999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 104 AEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 104 A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
+++.+++.++.+|+|+..+..+|.++...+ ++++|.++|+++++..|++. .+..++.++.++|+.++|.+.+++
T Consensus 313 al~~~e~~lk~~P~~~~l~l~lgrl~~~~~-~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 313 LEKVLRQQIKQHGDTPLLWSTLGQLLMKHG-EWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999999999977 59999999999999999854 567899999999999999888887
No 101
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.13 E-value=4e-10 Score=98.67 Aligned_cols=114 Identities=10% Similarity=-0.041 Sum_probs=96.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcC
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSK-------QDLPKAEEYYSRAILA--DPGDGEILSQYAKLVWELHN 134 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~-------g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~l~~~~~ 134 (197)
+++..|+.+|+++++++|+++.+|..++.++.... .+..++.+..++++.+ +|.++.++.-+|......|
T Consensus 356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g- 434 (517)
T PRK10153 356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKG- 434 (517)
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcC-
Confidence 56889999999999999999999998885544311 1345677777787764 8889999999998877756
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 135 DQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 135 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
++++|...+++|+.++| +..+|..+|.++...|+.++|.+.+++
T Consensus 435 ~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 435 KTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 59999999999999999 588999999999999999999999988
No 102
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.12 E-value=6.4e-10 Score=71.76 Aligned_cols=69 Identities=33% Similarity=0.408 Sum_probs=55.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199 92 QFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG 162 (197)
Q Consensus 92 ~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 162 (197)
.++.. .+++++|++++++++.++|+++..+..+|.+++.+|+ +++|.+.|+++++..|+++.+....+.
T Consensus 3 ~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~-~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 3 QIYLQ-QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGR-YEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHh-CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhcc-HHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 34555 7888888888888888888888888888888888885 888888888888888888877655543
No 103
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=99.12 E-value=1.3e-09 Score=81.66 Aligned_cols=97 Identities=16% Similarity=0.187 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-
Q 029199 66 SQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQ----------DLPKAEEYYSRAILADPGDGEILSQYAKLVWELHN- 134 (197)
Q Consensus 66 ~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g----------~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~- 134 (197)
++.|.+.++.....||.+++.+++.|..+.. +. .+++|+.-|++||.++|+...+++++|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLE-LAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLE-LAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH-HHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHH-HHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 5789999999999999999999999977776 43 45678899999999999999999999999876553
Q ss_pred ---------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 135 ---------DQDRAATYYERAVHASPEDSHVHASYAGF 163 (197)
Q Consensus 135 ---------~~~~A~~~~~~al~~~p~~~~~~~~la~~ 163 (197)
.|++|.++|++|+..+|+|...+..+-.+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 37899999999999999999877766655
No 104
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=2.1e-10 Score=96.63 Aligned_cols=177 Identities=15% Similarity=0.065 Sum_probs=103.7
Q ss_pred CCcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCC--------CCCCCCCC------cccCCCCCHH
Q 029199 2 AGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGG--------TGGGGSGF------YPAGSGGDSQ 67 (197)
Q Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~------~~~~~~g~~~ 67 (197)
+|++.=--|.+..|...|..++.-+....+.++..|+....+|..++. +.--.+.. ..+....+..
T Consensus 496 kgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 496 KGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred CCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHH
Confidence 455554556677777777776666777788888888888775321110 00000000 0111223444
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 029199 68 GVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAV 147 (197)
Q Consensus 68 ~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al 147 (197)
+|++.|.++..+-|++|.++..||.++-. .|+-.+|.+|+-...+..|.|.+..-.+|..|...+ .+++|+.+|+++-
T Consensus 576 qaie~~~q~~slip~dp~ilskl~dlydq-egdksqafq~~ydsyryfp~nie~iewl~ayyidtq-f~ekai~y~ekaa 653 (840)
T KOG2003|consen 576 QAIELLMQANSLIPNDPAILSKLADLYDQ-EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQ-FSEKAINYFEKAA 653 (840)
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHhhc-ccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhH-HHHHHHHHHHHHH
Confidence 44444444444444444444444433222 444444444444444444444444444554455545 5788888899988
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 148 HASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 148 ~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
-+.|+........+.|+.+.|+|++|.+.|..+
T Consensus 654 liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 654 LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 888888888888899999999999987777654
No 105
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.11 E-value=4.2e-10 Score=100.65 Aligned_cols=152 Identities=18% Similarity=0.155 Sum_probs=129.6
Q ss_pred hhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHH
Q 029199 6 LSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPL 85 (197)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~ 85 (197)
+=.-|+.++|...+-..+..+|..++.|...|..... .|+.+++..+.-.|..++|++.+
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEq--------------------rGd~eK~l~~~llAAHL~p~d~e 208 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQ--------------------RGDIEKALNFWLLAAHLNPKDYE 208 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH--------------------cccHHHHHHHHHHHHhcCCCChH
Confidence 3345888999999999999999999999999999887 49999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHH
Q 029199 86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED-----SHVHASY 160 (197)
Q Consensus 86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l 160 (197)
.|..++..... +|++++|+-||.+|++.+|.+-...+.++.+|.++| +...|.+.|.+++..+|.. -......
T Consensus 209 ~W~~ladls~~-~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G-~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~ 286 (895)
T KOG2076|consen 209 LWKRLADLSEQ-LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTG-DLKRAMETFLQLLQLDPPVDIERIEDLIRRV 286 (895)
T ss_pred HHHHHHHHHHh-cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-hHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Confidence 99999955555 999999999999999999999999999999999988 5899999999999999821 1223455
Q ss_pred HHHHHHcCCccccccCCCc
Q 029199 161 AGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 161 a~~~~~~g~~~ea~~~~~~ 179 (197)
+..+...++.+.|...+..
T Consensus 287 ~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 287 AHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 6667777766666544444
No 106
>PRK15331 chaperone protein SicA; Provisional
Probab=99.10 E-value=3e-10 Score=84.16 Aligned_cols=102 Identities=12% Similarity=-0.042 Sum_probs=92.6
Q ss_pred HHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 029199 77 VEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHV 156 (197)
Q Consensus 77 l~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~ 156 (197)
..+.++.-+..+.+|.-++. .|++++|+..|+-....+|.|+..|..+|.++..++. +++|+..|..+..+++++|..
T Consensus 30 ~gis~~~le~iY~~Ay~~y~-~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~-y~~Ai~~Y~~A~~l~~~dp~p 107 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYN-QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQ-FQKACDLYAVAFTLLKNDYRP 107 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcccCCCCc
Confidence 34556667778888977787 9999999999999999999999999999999888885 999999999999999999999
Q ss_pred HHHHHHHHHHcCCccccccCCCcc
Q 029199 157 HASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 157 ~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.+..|.|+..+|+.++|...|+.+
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a 131 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELV 131 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999999999998888764
No 107
>PRK11906 transcriptional regulator; Provisional
Probab=99.10 E-value=9.3e-10 Score=93.27 Aligned_cols=154 Identities=8% Similarity=-0.034 Sum_probs=117.4
Q ss_pred HHHHHhhhcCccc---ccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199 11 KVMEALWNAGFEQ---ERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFL 87 (197)
Q Consensus 11 ~~~~a~~~~~~~~---~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 87 (197)
..+.|+..|..+. +.+|..+..|......--..-- . .......+..+|.+.-+++++++|+|+.++
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~-----~------g~~~~~~~~~~a~~~A~rAveld~~Da~a~ 341 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL-----H------GKSELELAAQKALELLDYVSDITTVDGKIL 341 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH-----h------cCCCchHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 3467888888888 8888888777665544211000 0 000013677899999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHH
Q 029199 88 SNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGF-LWE 166 (197)
Q Consensus 88 ~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~ 166 (197)
..+|.++.. .++++.|...|++|+.++|+.+.+++..|+++.-.|+ .++|.++++++++++|....+-...-++ .+-
T Consensus 342 ~~~g~~~~~-~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~-~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~ 419 (458)
T PRK11906 342 AIMGLITGL-SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK-IEEARICIDKSLQLEPRRRKAVVIKECVDMYV 419 (458)
T ss_pred HHHHHHHHh-hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC-HHHHHHHHHHHhccCchhhHHHHHHHHHHHHc
Confidence 999977777 8889999999999999999999999999999888785 9999999999999999876554333333 333
Q ss_pred cCCccccccCC
Q 029199 167 TEEDNDECDAP 177 (197)
Q Consensus 167 ~g~~~ea~~~~ 177 (197)
....++++..|
T Consensus 420 ~~~~~~~~~~~ 430 (458)
T PRK11906 420 PNPLKNNIKLY 430 (458)
T ss_pred CCchhhhHHHH
Confidence 45556665444
No 108
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.09 E-value=4.3e-09 Score=84.76 Aligned_cols=92 Identities=14% Similarity=0.247 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCH
Q 029199 63 GGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG---DGEILSQYAKLVWELHNDQ 136 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~---~~~~~~~lg~~l~~~~~~~ 136 (197)
.|++++|+..|++.++..|++ +.+++.+|.+++. .|++++|+..|+++++..|+ .+++++.+|.++..+| ++
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g-~~ 233 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG-DT 233 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC-CH
Confidence 477777777777777777777 4677777777666 77777777777777777665 4567777777777766 47
Q ss_pred HHHHHHHHHHHHhCCCCHHH
Q 029199 137 DRAATYYERAVHASPEDSHV 156 (197)
Q Consensus 137 ~~A~~~~~~al~~~p~~~~~ 156 (197)
++|...|+++++..|+...+
T Consensus 234 ~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHHHHCcCCHHH
Confidence 77777777777777776644
No 109
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.08 E-value=4.7e-10 Score=71.37 Aligned_cols=64 Identities=28% Similarity=0.345 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAK 127 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~ 127 (197)
.|++++|++.|++++..+|++..+++.+|.++.. .|++++|...+++++..+|+++.++..++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 5899999999999999999999999999988888 999999999999999999999988877764
No 110
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.08 E-value=3.2e-10 Score=102.13 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=111.6
Q ss_pred HHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199 8 EEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFL 87 (197)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 87 (197)
++++.+.|+..|..+++.+|.+...+++.|+..-.. .....+..++..+.++..++|++|.++
T Consensus 211 kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~-----------------~d~~s~~~~~~ll~~ay~~n~~nP~~l 273 (1018)
T KOG2002|consen 211 KLGMSEKALLAFERALQLDPTCVSALVALGEVDLNF-----------------NDSDSYKKGVQLLQRAYKENNENPVAL 273 (1018)
T ss_pred hccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHc-----------------cchHHHHHHHHHHHHHHhhcCCCcHHH
Confidence 455666677777777777777776666666553221 112566778888888888888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Q 029199 88 SNYAQFLYQSKQDLPKAEEYYSRAILADPGDG---EILSQYAKLVWELHNDQDRAATYYERAVHASPED-SHVHASYAGF 163 (197)
Q Consensus 88 ~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~ 163 (197)
..|++.+|. .|++..+......++...-..+ ...|.+|.++..+| ++++|..+|..++..+|++ .-.++.+|.+
T Consensus 274 ~~LAn~fyf-K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G-d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm 351 (1018)
T KOG2002|consen 274 NHLANHFYF-KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG-DFEKAFKYYMESLKADNDNFVLPLVGLGQM 351 (1018)
T ss_pred HHHHHHHhh-cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHccCCCCccccccchhHH
Confidence 888877776 7888888888888777654333 33778888888877 4888888888888888887 6667888888
Q ss_pred HHHcCCccccccCCCcc
Q 029199 164 LWETEEDNDECDAPSEL 180 (197)
Q Consensus 164 ~~~~g~~~ea~~~~~~~ 180 (197)
+...|+++++...|+++
T Consensus 352 ~i~~~dle~s~~~fEkv 368 (1018)
T KOG2002|consen 352 YIKRGDLEESKFCFEKV 368 (1018)
T ss_pred HHHhchHHHHHHHHHHH
Confidence 88888888887666664
No 111
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.07 E-value=1.3e-09 Score=95.48 Aligned_cols=132 Identities=13% Similarity=-0.085 Sum_probs=106.0
Q ss_pred HHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHh--CCCCHHHH
Q 029199 10 VKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEE--NPGNPLFL 87 (197)
Q Consensus 10 ~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~ 87 (197)
.....|+..|.++++.+|+.+..+...++....... +.. ....+...+.+..++++.+ +|.++.+|
T Consensus 356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~-------~~~-----~~~~~l~~a~~~~~~a~al~~~~~~~~~~ 423 (517)
T PRK10153 356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHS-------QQP-----LDEKQLAALSTELDNIVALPELNVLPRIY 423 (517)
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHh-------cCC-----ccHHHHHHHHHHHHHhhhcccCcCChHHH
Confidence 457799999999999999999888877665422111 000 1113456778888887774 88889999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 029199 88 SNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHV 156 (197)
Q Consensus 88 ~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~ 156 (197)
..+|..... .|++++|...+++|+.++| +..++..+|.++...|+ .++|++.|++|++++|.++..
T Consensus 424 ~ala~~~~~-~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~-~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 424 EILAVQALV-KGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD-NRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCchH
Confidence 999955555 8999999999999999999 58999999999999885 999999999999999998853
No 112
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.06 E-value=1.4e-09 Score=92.18 Aligned_cols=71 Identities=17% Similarity=0.089 Sum_probs=66.2
Q ss_pred HhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 029199 78 EENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEI---LSQYAKLVWELHNDQDRAATYYERAVHAS 150 (197)
Q Consensus 78 ~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~---~~~lg~~l~~~~~~~~~A~~~~~~al~~~ 150 (197)
..+|+++.+|+|+|..++. .|++++|+.+|+++|+++|+++++ |+|+|.+|..+|+ +++|+++|++|+++.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~-lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr-~dEAla~LrrALels 142 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFS-KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREE-GKKAADCLRTALRDY 142 (453)
T ss_pred cCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhc
Confidence 3689999999999988888 999999999999999999999965 9999999999885 999999999999983
No 113
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.4e-10 Score=95.05 Aligned_cols=165 Identities=10% Similarity=0.023 Sum_probs=122.4
Q ss_pred CCCcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------------CCCCCCCCC--cccCCCC
Q 029199 1 MAGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------------GTGGGGSGF--YPAGSGG 64 (197)
Q Consensus 1 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------------~~~~~~~~~--~~~~~~g 64 (197)
|||+.|-.++|+++|+.-|.-++-..|.+-++|-..=..+-..+++.+ .+.+-+-.| +.+..-.
T Consensus 339 lKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~ 418 (564)
T KOG1174|consen 339 LKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPR 418 (564)
T ss_pred hccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCch
Confidence 799999999999999999999988888776554322222222222111 000111111 1222223
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 029199 65 DSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYE 144 (197)
Q Consensus 65 ~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~ 144 (197)
--++|.+.|+++++++|....+...++.++.. .|.+..++.++++.|...|+ ...+..+|.++..++. +++|.++|.
T Consensus 419 ~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~-Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne-~Q~am~~y~ 495 (564)
T KOG1174|consen 419 MREKAKKFAEKSLKINPIYTPAVNLIAELCQV-EGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNE-PQKAMEYYY 495 (564)
T ss_pred hHHHHHHHHHhhhccCCccHHHHHHHHHHHHh-hCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhh-HHHHHHHHH
Confidence 45899999999999999999999999977776 89999999999999987775 4678899999999885 999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcC
Q 029199 145 RAVHASPEDSHVHASYAGFLWETE 168 (197)
Q Consensus 145 ~al~~~p~~~~~~~~la~~~~~~g 168 (197)
.||+++|.+....-.+-.+-.+..
T Consensus 496 ~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 496 KALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHhcCccchHHHHHHHHHHhccC
Confidence 999999999988776665544444
No 114
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.05 E-value=2.4e-09 Score=93.45 Aligned_cols=158 Identities=18% Similarity=0.220 Sum_probs=122.4
Q ss_pred CCCcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC
Q 029199 1 MAGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN 80 (197)
Q Consensus 1 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 80 (197)
|+|-++.++++++.|-.-|..+.+.=|+++++|+...--=.. .|+.-+|...++++.-.|
T Consensus 690 mlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk--------------------~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 690 MLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK--------------------DGQLVRARSILDRARLKN 749 (913)
T ss_pred HHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH--------------------hcchhhHHHHHHHHHhcC
Confidence 567777777777777777777777777777777664332222 367778888888888888
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH------------------------------HHHHHHHHHH
Q 029199 81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGE------------------------------ILSQYAKLVW 130 (197)
Q Consensus 81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~------------------------------~~~~lg~~l~ 130 (197)
|++...|...-.+=.+ .|..++|.....+||+-.|++.. ++...|.+++
T Consensus 750 Pk~~~lwle~Ir~ElR-~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw 828 (913)
T KOG0495|consen 750 PKNALLWLESIRMELR-AGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFW 828 (913)
T ss_pred CCcchhHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHH
Confidence 8888888876655555 78888888888888887776544 4455566667
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 131 ELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 131 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.-. .+++|.++|.++++++|++.++|-.+-..+.+.|..++..+.+..+
T Consensus 829 ~e~-k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 829 SEK-KIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred HHH-HHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 755 4999999999999999999999999999999999888877666664
No 115
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.04 E-value=1.2e-09 Score=89.21 Aligned_cols=175 Identities=15% Similarity=0.093 Sum_probs=95.0
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCC------CcccCCCCCHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSG------FYPAGSGGDSQG 68 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~------~~~~~~~g~~~~ 68 (197)
|..+=--+++.+|++-|--+++.+|++-..++.++..+-..|...- ....|.+. +..+++.|++++
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~ 124 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQ 124 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHH
Confidence 4455566888999999999999999999999999988777543110 12233321 223344455555
Q ss_pred HHHHHHHHHHhCCCCHH---HHHHHHHH------------HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 029199 69 VEEYYKKMVEENPGNPL---FLSNYAQF------------LYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELH 133 (197)
Q Consensus 69 A~~~~~~al~~~P~~~~---~~~~la~~------------l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~ 133 (197)
|+..|..+|+-+|++.. +.-.++.+ .+. .|+...|+....+.|++.|=++..+...+.+|...+
T Consensus 125 A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~-~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~ 203 (504)
T KOG0624|consen 125 AEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASG-SGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEG 203 (504)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhc-CCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcC
Confidence 55555555555553322 22222210 111 234444555555555555555555555555555544
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 134 NDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 134 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
+..+|+.-++.+-++..+|.+.++..+.+++..|+.+......++
T Consensus 204 -e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 204 -EPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred -cHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 255555555555555555555555555555555555555444444
No 116
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.04 E-value=3.1e-10 Score=98.41 Aligned_cols=156 Identities=16% Similarity=0.172 Sum_probs=120.4
Q ss_pred CcchhHHHHHHHHhhhcCccccc--------CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQER--------GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYK 74 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~--------~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 74 (197)
|.+|...|++++|+..+..+++. .|.-..+....|..+.. .+++.+|+..|+
T Consensus 206 a~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~--------------------~~k~~eAv~ly~ 265 (508)
T KOG1840|consen 206 AEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRS--------------------LGKYDEAVNLYE 265 (508)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHH--------------------hccHHHHHHHHH
Confidence 45678889999998888777665 22223333334444333 599999999999
Q ss_pred HHHHh--------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHcCCHHH
Q 029199 75 KMVEE--------NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD--------PGDGEILSQYAKLVWELHNDQDR 138 (197)
Q Consensus 75 ~al~~--------~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~--------P~~~~~~~~lg~~l~~~~~~~~~ 138 (197)
+|+.+ +|.-+.++.+||.+++. .|++++|..++++|+.+. |.=+..+.+++.++..+++ +++
T Consensus 266 ~AL~i~e~~~G~~h~~va~~l~nLa~ly~~-~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~-~Ee 343 (508)
T KOG1840|consen 266 EALTIREEVFGEDHPAVAATLNNLAVLYYK-QGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNE-YEE 343 (508)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhc-cCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcc-hhH
Confidence 99986 45557789999977776 999999999999999873 3344567788888888775 999
Q ss_pred HHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 139 AATYYERAVHAS-----PED---SHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 139 A~~~~~~al~~~-----p~~---~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
|..++++++++- ++| +..+.++|.+|..+|+++||++.+..+
T Consensus 344 a~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 344 AKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 999999999873 334 457889999999999999998877764
No 117
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.00 E-value=8.3e-09 Score=87.42 Aligned_cols=124 Identities=19% Similarity=0.063 Sum_probs=106.6
Q ss_pred hHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 029199 7 SEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLF 86 (197)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 86 (197)
-+.++..+|...|+..+...|+|+..+-..|-.+-. .++.++|.+.+++++.++|+.+..
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~--------------------~nk~~~A~e~~~kal~l~P~~~~l 376 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLE--------------------ANKAKEAIERLKKALALDPNSPLL 376 (484)
T ss_pred HHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------cCChHHHHHHHHHHHhcCCCccHH
Confidence 356677788888888888899999888777766555 399999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 029199 87 LSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPE 152 (197)
Q Consensus 87 ~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~ 152 (197)
+.++|..+.. .|++.+|+..+.+.+..+|+||..|..++..|-.+|. ..+|...+-....+...
T Consensus 377 ~~~~a~all~-~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~-~~~a~~A~AE~~~~~G~ 440 (484)
T COG4783 377 QLNLAQALLK-GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN-RAEALLARAEGYALAGR 440 (484)
T ss_pred HHHHHHHHHh-cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc-hHHHHHHHHHHHHhCCC
Confidence 9999999998 9999999999999999999999999999999988885 67777777666665543
No 118
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.00 E-value=5.6e-09 Score=74.25 Aligned_cols=92 Identities=20% Similarity=0.123 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHH
Q 029199 85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD---GEILSQYAKLVWELHNDQDRAATYYERAVHASPE---DSHVHA 158 (197)
Q Consensus 85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~---~~~~~~ 158 (197)
.+++++|.++-. .|+.++|+..|++++...++. ..++..+|..+..+|+ +++|+..+++++...|+ +..+..
T Consensus 2 ~~~~~~A~a~d~-~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~-~deA~~~L~~~~~~~p~~~~~~~l~~ 79 (120)
T PF12688_consen 2 RALYELAWAHDS-LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGR-YDEALALLEEALEEFPDDELNAALRV 79 (120)
T ss_pred chHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCccccHHHHH
Confidence 345566644443 666666666666666654433 3455666666666664 66666666666666565 556666
Q ss_pred HHHHHHHHcCCccccccCCC
Q 029199 159 SYAGFLWETEEDNDECDAPS 178 (197)
Q Consensus 159 ~la~~~~~~g~~~ea~~~~~ 178 (197)
.++.++..+|+.+||...+-
T Consensus 80 f~Al~L~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 80 FLALALYNLGRPKEALEWLL 99 (120)
T ss_pred HHHHHHHHCCCHHHHHHHHH
Confidence 66666666666666654443
No 119
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.99 E-value=4.9e-09 Score=84.39 Aligned_cols=97 Identities=14% Similarity=0.105 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHH
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD---GEILSQYAKLVWELHNDQDRAATYYERAVHASPE---DSHV 156 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~---~~~~ 156 (197)
+...++..+..+....|++++|+..|++.++.+|++ +.+++.+|.+|+..| ++++|+..|+++++..|+ .+++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g-~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG-KKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCcchhHH
Confidence 456677777555333799999999999999999998 589999999999977 599999999999998877 5788
Q ss_pred HHHHHHHHHHcCCccccccCCCcc
Q 029199 157 HASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 157 ~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
++.+|.++..+|+.++|...|+++
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999876
No 120
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.99 E-value=3.2e-09 Score=68.43 Aligned_cols=66 Identities=23% Similarity=0.238 Sum_probs=60.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199 61 GSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAK 127 (197)
Q Consensus 61 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~ 127 (197)
...+++++|++++++++.++|+++..|..+|.+++. +|++.+|+..|+++++.+|+++.+....+.
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELDPDDPELWLQRARCLFQ-LGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 446999999999999999999999999999988887 999999999999999999999998766553
No 121
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.99 E-value=1.9e-09 Score=83.14 Aligned_cols=106 Identities=10% Similarity=0.093 Sum_probs=95.9
Q ss_pred CChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 029199 28 VGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEY 107 (197)
Q Consensus 28 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~ 107 (197)
..+.+++.+|+-.+.+ |-..-|.-.|.+++.+.|+-+.+.+-+| +++...|+++.|.+.
T Consensus 63 eRA~l~fERGvlYDSl--------------------GL~~LAR~DftQaLai~P~m~~vfNyLG-~Yl~~a~~fdaa~ea 121 (297)
T COG4785 63 ERAQLLFERGVLYDSL--------------------GLRALARNDFSQALAIRPDMPEVFNYLG-IYLTQAGNFDAAYEA 121 (297)
T ss_pred HHHHHHHHhcchhhhh--------------------hHHHHHhhhhhhhhhcCCCcHHHHHHHH-HHHHhcccchHHHHH
Confidence 4578899999988886 7888999999999999999999999999 555559999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 029199 108 YSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSH 155 (197)
Q Consensus 108 ~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~ 155 (197)
|+..+++||.+..+..|.|..++-.|| ++-|.+-+.+-.+.||++|-
T Consensus 122 Fds~~ELDp~y~Ya~lNRgi~~YY~gR-~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 122 FDSVLELDPTYNYAHLNRGIALYYGGR-YKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred hhhHhccCCcchHHHhccceeeeecCc-hHhhHHHHHHHHhcCCCChH
Confidence 999999999999999999999888776 89999999999999999884
No 122
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.98 E-value=4.8e-09 Score=91.28 Aligned_cols=155 Identities=14% Similarity=0.065 Sum_probs=130.1
Q ss_pred CCCcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC
Q 029199 1 MAGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN 80 (197)
Q Consensus 1 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 80 (197)
|||..|.-.|+-.+|......++.-++.+.-+|..-|+.... ..+|++|++||+.|+.++
T Consensus 46 mkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~--------------------dK~Y~eaiKcy~nAl~~~ 105 (700)
T KOG1156|consen 46 MKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS--------------------DKKYDEAIKCYRNALKIE 105 (700)
T ss_pred hccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh--------------------hhhHHHHHHHHHHHHhcC
Confidence 799999999999999999999999999999999999987655 589999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCH---
Q 029199 81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS---PEDS--- 154 (197)
Q Consensus 81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~---p~~~--- 154 (197)
|+|..+|..++ ++..++++++.....-.+.++++|.+-..|..+++.....|. +..|...++.-.... |+..
T Consensus 106 ~dN~qilrDls-lLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~-y~~A~~il~ef~~t~~~~~s~~~~e 183 (700)
T KOG1156|consen 106 KDNLQILRDLS-LLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE-YKMALEILEEFEKTQNTSPSKEDYE 183 (700)
T ss_pred CCcHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccCCCHHHHH
Confidence 99999999999 555569999999999999999999999999999999998884 899988877766554 4322
Q ss_pred --HHHHHHHHHHHHcCCccccccCC
Q 029199 155 --HVHASYAGFLWETEEDNDECDAP 177 (197)
Q Consensus 155 --~~~~~la~~~~~~g~~~ea~~~~ 177 (197)
+.......++.+.|..+++.+..
T Consensus 184 ~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 184 HSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHH
Confidence 23344455566666666654443
No 123
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.97 E-value=2.4e-08 Score=70.97 Aligned_cols=98 Identities=12% Similarity=0.099 Sum_probs=85.7
Q ss_pred hhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHH
Q 029199 30 QEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEE 106 (197)
Q Consensus 30 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~ 106 (197)
|.+++..+...+. .|+.++|+..|++++...+.. ..++.++|..+.. .|++++|+.
T Consensus 1 ~~~~~~~A~a~d~--------------------~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~-LG~~deA~~ 59 (120)
T PF12688_consen 1 PRALYELAWAHDS--------------------LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN-LGRYDEALA 59 (120)
T ss_pred CchHHHHHHHHHh--------------------cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-cCCHHHHHH
Confidence 4566777777777 499999999999999986555 5688999988887 999999999
Q ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 029199 107 YYSRAILADPG---DGEILSQYAKLVWELHNDQDRAATYYERAVHA 149 (197)
Q Consensus 107 ~~~~al~l~P~---~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~ 149 (197)
.+++++...|+ +..+...++.+++..|+ .++|+..+-.++.-
T Consensus 60 ~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr-~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 60 LLEEALEEFPDDELNAALRVFLALALYNLGR-PKEALEWLLEALAE 104 (120)
T ss_pred HHHHHHHHCCCccccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH
Confidence 99999999898 88999999999999997 89999999988863
No 124
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.95 E-value=3.5e-09 Score=90.20 Aligned_cols=151 Identities=9% Similarity=0.021 Sum_probs=116.2
Q ss_pred chhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHH--------
Q 029199 5 ALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKM-------- 76 (197)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a-------- 76 (197)
++-..++..+|+..+....+.+|+++..+...+-.+-.. |++++|++.+.+.
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~--------------------gdw~~a~~~l~~l~k~~~~~~ 221 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT--------------------GAWSSLLDILPSMAKAHVGDE 221 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--------------------HhHHHHHHHHHHHHHcCCCCH
Confidence 344567777888888888888888877666555444332 4444444222222
Q ss_pred ----------------------------------HHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199 77 ----------------------------------VEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEIL 122 (197)
Q Consensus 77 ----------------------------------l~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~ 122 (197)
-+..|+++.++..++..+.. .|+.++|...++++++ .|.++...
T Consensus 222 ~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~-~g~~~~A~~~L~~~l~-~~~~~~l~ 299 (398)
T PRK10747 222 EHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE-CDDHDTAQQIILDGLK-RQYDERLV 299 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHh-cCCCHHHH
Confidence 23456688899999988887 9999999999999999 56677776
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 123 SQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 123 ~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
..++.+. .+ +.+++++.+++.++.+|+|+..+..+|.++...|++++|.+.|++.
T Consensus 300 ~l~~~l~--~~-~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~a 354 (398)
T PRK10747 300 LLIPRLK--TN-NPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAA 354 (398)
T ss_pred HHHhhcc--CC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666542 25 5899999999999999999999999999999999999999999986
No 125
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.95 E-value=1.2e-08 Score=87.24 Aligned_cols=117 Identities=14% Similarity=0.080 Sum_probs=105.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG-EILSQYAKLVWELHNDQDRAAT 141 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~-~~~~~lg~~l~~~~~~~~~A~~ 141 (197)
.|+++.|.+.+.++.+..|+....+...|.+... .|++++|.++++++.+..|++. .+...++.++...+ ++++|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~-~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~-~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQ-RGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN-ELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC-CHHHHHH
Confidence 5999999999999999999988888877877776 9999999999999999999986 57777788888877 5999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCccc
Q 029199 142 YYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELD 181 (197)
Q Consensus 142 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~ 181 (197)
.+++.++..|+++.++..++.++..+|+++++.+.+.++.
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~ 214 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMA 214 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988777763
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.94 E-value=6.4e-09 Score=95.24 Aligned_cols=112 Identities=12% Similarity=0.072 Sum_probs=95.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-------------------HHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG-------------------EILS 123 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~-------------------~~~~ 123 (197)
.+++++|++.++.+++.+|+...+++.+|.+++. .++++++... +++.+.+.+. .+++
T Consensus 44 ~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q-~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~ 120 (906)
T PRK14720 44 ENLTDEAKDICEEHLKEHKKSISALYISGILSLS-RRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALR 120 (906)
T ss_pred cCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHh-hcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHH
Confidence 4899999999999999999999999999975555 7877776655 6666666665 8999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 124 QYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 124 ~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
.+|.||-++|+ .++|...|+++|+.+|+|+.+..++|..|... +.++|...+.+
T Consensus 121 ~LA~~Ydk~g~-~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 121 TLAEAYAKLNE-NKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred HHHHHHHHcCC-hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 99999999886 89999999999999999999999999999999 88888665554
No 127
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.94 E-value=5.5e-09 Score=85.45 Aligned_cols=156 Identities=15% Similarity=0.119 Sum_probs=130.2
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCCCc----------------
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSGFY---------------- 58 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~---------------- 58 (197)
|++|=-+||.+.|+..|+.+++..|+=....+.+|..+-+.|.... ..-.|.+...
T Consensus 79 aT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l 158 (504)
T KOG0624|consen 79 ATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVL 158 (504)
T ss_pred HHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHH
Confidence 5677788999999999999999999988888999988877775332 1112321110
Q ss_pred -----ccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 029199 59 -----PAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELH 133 (197)
Q Consensus 59 -----~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~ 133 (197)
...-.|++..++....+.|++.|=++..+..++.++.. .|+..+|+..++.+-++..+|.+.++.+..+++..|
T Consensus 159 ~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~-~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vg 237 (504)
T KOG0624|consen 159 VQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA-EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVG 237 (504)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh-cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhh
Confidence 11235999999999999999999999999999988887 999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199 134 NDQDRAATYYERAVHASPEDSHVHASY 160 (197)
Q Consensus 134 ~~~~~A~~~~~~al~~~p~~~~~~~~l 160 (197)
|.+.++..++.+|+++|++-..+-.+
T Consensus 238 -d~~~sL~~iRECLKldpdHK~Cf~~Y 263 (504)
T KOG0624|consen 238 -DAENSLKEIRECLKLDPDHKLCFPFY 263 (504)
T ss_pred -hHHHHHHHHHHHHccCcchhhHHHHH
Confidence 59999999999999999987665443
No 128
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.93 E-value=4.1e-09 Score=86.21 Aligned_cols=105 Identities=20% Similarity=0.162 Sum_probs=94.9
Q ss_pred CcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 029199 57 FYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQ 136 (197)
Q Consensus 57 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~ 136 (197)
|..|...|.|++|+.||.+++..+|.++..+.|++..|++ ...|..|+..+..|+.+|-...-++...|.+-..+|. .
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk-~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~-~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK-QKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN-N 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHH-HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh-H
Confidence 4566778999999999999999999999999999988887 9999999999999999999999999999999999996 8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 137 DRAATYYERAVHASPEDSHVHASYAGF 163 (197)
Q Consensus 137 ~~A~~~~~~al~~~p~~~~~~~~la~~ 163 (197)
.+|.+-++++|++.|++.+..-.++.+
T Consensus 182 ~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 999999999999999988876655544
No 129
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1e-08 Score=85.27 Aligned_cols=130 Identities=16% Similarity=0.096 Sum_probs=104.4
Q ss_pred CCcchhHHHHHHHHhhhcCcccccCCC----Ch-----------hhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCH
Q 029199 2 AGTALSEEVKVMEALWNAGFEQERGTV----GQ-----------EMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDS 66 (197)
Q Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~p~----~~-----------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 66 (197)
.||+|=+.+|+..|+..|.+++..-.+ ++ .++++..+. +.+.+++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c--------------------~lKl~~~ 273 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAAC--------------------YLKLKEY 273 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHH--------------------HHhhhhH
Confidence 588899999999999887664433221 11 122222222 3345999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029199 67 QGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERA 146 (197)
Q Consensus 67 ~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~a 146 (197)
.+|++...++|.++|+|..+++..|.++.. +|+++.|+..|+++++++|+|-.+...+..+-.+..+..++..+.|.+.
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~-~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLA-LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHh-hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888 9999999999999999999999999999988777776566778889998
Q ss_pred HHhCCC
Q 029199 147 VHASPE 152 (197)
Q Consensus 147 l~~~p~ 152 (197)
+..-+.
T Consensus 353 F~k~~~ 358 (397)
T KOG0543|consen 353 FAKLAE 358 (397)
T ss_pred hhcccc
Confidence 877653
No 130
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=4.6e-08 Score=74.68 Aligned_cols=102 Identities=21% Similarity=0.255 Sum_probs=89.3
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 029199 59 PAGSGGDSQGVEEYYKKMVEENPGNPL-----FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELH 133 (197)
Q Consensus 59 ~~~~~g~~~~A~~~~~~al~~~P~~~~-----~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~ 133 (197)
.+...|+|++|..-|..||.+-|..+. .+.|.|.++.+ ++.++.|+..+.++++++|.+.-++...+.+|-++.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK-l~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIK-LRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH-hhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 455679999999999999999998743 56788877776 999999999999999999999999999999999987
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199 134 NDQDRAATYYERAVHASPEDSHVHASYAG 162 (197)
Q Consensus 134 ~~~~~A~~~~~~al~~~p~~~~~~~~la~ 162 (197)
+ +++|++-|.+.++++|.+-.+.-....
T Consensus 183 k-~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 183 K-YEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred h-HHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 5 999999999999999998876554443
No 131
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.85 E-value=1.3e-08 Score=86.36 Aligned_cols=72 Identities=18% Similarity=0.111 Sum_probs=63.1
Q ss_pred cccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhcC
Q 029199 23 QERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLF---LSNYAQFLYQSKQ 99 (197)
Q Consensus 23 ~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~---~~~la~~l~~~~g 99 (197)
.+.+|++++.|+..|+.+.. .|++++|+.+|+++++++|++..+ |+|+|.++.. +|
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~--------------------lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LG 126 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFS--------------------KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-RE 126 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cC
Confidence 45678888888888888766 499999999999999999999965 9999966666 99
Q ss_pred CHHHHHHHHHHHHHhC
Q 029199 100 DLPKAEEYYSRAILAD 115 (197)
Q Consensus 100 ~~~~A~~~~~~al~l~ 115 (197)
++++|+.+|++|+++.
T Consensus 127 r~dEAla~LrrALels 142 (453)
T PLN03098 127 EGKKAADCLRTALRDY 142 (453)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999999983
No 132
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.85 E-value=1.1e-08 Score=88.84 Aligned_cols=156 Identities=15% Similarity=0.055 Sum_probs=119.2
Q ss_pred CcchhHHHHHHHHhhhcCccccc--------CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQER--------GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYK 74 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~--------~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 74 (197)
|.+|...+++.+|+..|..+... .|.-+..+...+..+.. .|++++|..+++
T Consensus 248 a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~--------------------~GKf~EA~~~~e 307 (508)
T KOG1840|consen 248 ALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYK--------------------QGKFAEAEEYCE 307 (508)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc--------------------cCChHHHHHHHH
Confidence 56777888899988888765532 22223444444444433 599999999999
Q ss_pred HHHHhC--------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----C---CCHHHHHHHHHHHHHHcCCHHH
Q 029199 75 KMVEEN--------PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD-----P---GDGEILSQYAKLVWELHNDQDR 138 (197)
Q Consensus 75 ~al~~~--------P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~-----P---~~~~~~~~lg~~l~~~~~~~~~ 138 (197)
+|+++- |.-...+.+++.++.. ++++++|+.+|++++++. + .-+.+..++|.+|+.+|+ +++
T Consensus 308 ~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~-~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk-~~e 385 (508)
T KOG1840|consen 308 RALEIYEKLLGASHPEVAAQLSELAAILQS-MNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGK-YKE 385 (508)
T ss_pred HHHHHHHHhhccChHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcc-hhH
Confidence 998763 3334567778866665 999999999999999872 3 446789999999999997 999
Q ss_pred HHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 139 AATYYERAVHAS--------PEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 139 A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
|.+.|++|+++. +.-...+.++|..+.+.+++.+|.+.|.+.
T Consensus 386 a~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 386 AEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 999999999875 333567889999999999999998887773
No 133
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.84 E-value=4.8e-08 Score=85.47 Aligned_cols=156 Identities=19% Similarity=0.173 Sum_probs=115.0
Q ss_pred cchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCC
Q 029199 4 TALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGN 83 (197)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~ 83 (197)
+++.+.|++++|+.-|......-++...+.-.+|-.+..+ |++++|...|...|+.||++
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kL--------------------g~~~eA~~~y~~Li~rNPdn 71 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKL--------------------GRKEEAEKIYRELIDRNPDN 71 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHHCCCc
Confidence 5788899999999999887777777777777777777664 89999999999999999999
Q ss_pred HHHHHHHHHHHHHhcC----------------------------------------------------------------
Q 029199 84 PLFLSNYAQFLYQSKQ---------------------------------------------------------------- 99 (197)
Q Consensus 84 ~~~~~~la~~l~~~~g---------------------------------------------------------------- 99 (197)
...+..|..++....+
T Consensus 72 ~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~ 151 (517)
T PF12569_consen 72 YDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKP 151 (517)
T ss_pred HHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 9998888866522111
Q ss_pred ---CHHHHH---HHHHH---HHHh------------CCCCH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 029199 100 ---DLPKAE---EYYSR---AILA------------DPGDG--EILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHV 156 (197)
Q Consensus 100 ---~~~~A~---~~~~~---al~l------------~P~~~--~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~ 156 (197)
+..++. .++.. .++. .|... ++++.++..+-..| ++++|++++++||...|+.++.
T Consensus 152 Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g-~~~~Al~~Id~aI~htPt~~el 230 (517)
T PF12569_consen 152 LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG-DYEKALEYIDKAIEHTPTLVEL 230 (517)
T ss_pred HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCCCcHHH
Confidence 222211 11111 1111 11112 45577788877877 5999999999999999999999
Q ss_pred HHHHHHHHHHcCCccccccCCCcc
Q 029199 157 HASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 157 ~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+...|.++.+.|++.+|.+..+..
T Consensus 231 y~~KarilKh~G~~~~Aa~~~~~A 254 (517)
T PF12569_consen 231 YMTKARILKHAGDLKEAAEAMDEA 254 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999987666654
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.83 E-value=1.5e-08 Score=92.78 Aligned_cols=139 Identities=17% Similarity=0.047 Sum_probs=107.5
Q ss_pred chhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCH
Q 029199 5 ALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNP 84 (197)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~ 84 (197)
.+..+++..+++......++..|++...++..|+-....+.......- ...-.+....++ .++++|...+...|++.
T Consensus 40 ~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k 116 (906)
T PRK14720 40 AYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKW-AIVEHICDKILLYGENK 116 (906)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccch-hHHHHHHHHHHhhhhhh
Confidence 344667788888888888999999999999999954443321111110 111122333455 78888888888899999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 029199 85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHA 149 (197)
Q Consensus 85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~ 149 (197)
.+++.||.+|-. +|+.++|...|+++|+++|+|+.+++++|..|... ++++|++++.+|+..
T Consensus 117 ~Al~~LA~~Ydk-~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 117 LALRTLAEAYAK-LNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHHH-cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHHHHHHHHHHHH
Confidence 999999966665 99999999999999999999999999999998886 599999999888765
No 135
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.81 E-value=9.7e-09 Score=89.78 Aligned_cols=170 Identities=14% Similarity=0.025 Sum_probs=135.0
Q ss_pred HHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCC-C-------CC-CCCCCCCC----Cccc-CCCCCHHHHHHHHH
Q 029199 9 EVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGG-R-------GG-GTGGGGSG----FYPA-GSGGDSQGVEEYYK 74 (197)
Q Consensus 9 ~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~-~-------~~-~~~~~~~~----~~~~-~~~g~~~~A~~~~~ 74 (197)
.|+|-.|...++.+.+..|++-++|++.- -+..... + +. -+.+|+.. .+.+ ...++.++|++.++
T Consensus 597 agdv~~ar~il~~af~~~pnseeiwlaav-Kle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSEEIWLAAV-KLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcHHHHHHHH-HHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence 36777888888888899999999998742 2222211 1 11 11122211 1111 22489999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 029199 75 KMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS 154 (197)
Q Consensus 75 ~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~ 154 (197)
++++..|++...|..+|.++-. +++.+.|...|..-++.-|..+..|..++.+--..++ .-+|...++++.-.+|.|.
T Consensus 676 e~lk~fp~f~Kl~lmlGQi~e~-~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~-~~rAR~ildrarlkNPk~~ 753 (913)
T KOG0495|consen 676 EALKSFPDFHKLWLMLGQIEEQ-MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ-LVRARSILDRARLKNPKNA 753 (913)
T ss_pred HHHHhCCchHHHHHHHhHHHHH-HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc-hhhHHHHHHHHHhcCCCcc
Confidence 9999999999999999988777 9999999999999999999999999999999888775 8899999999999999999
Q ss_pred HHHHHHHHHHHHcCCccccc----cCCCccc
Q 029199 155 HVHASYAGFLWETEEDNDEC----DAPSELD 181 (197)
Q Consensus 155 ~~~~~la~~~~~~g~~~ea~----~~~~~~~ 181 (197)
..|.....+-.+.|..++|. +.+|++|
T Consensus 754 ~lwle~Ir~ElR~gn~~~a~~lmakALQecp 784 (913)
T KOG0495|consen 754 LLWLESIRMELRAGNKEQAELLMAKALQECP 784 (913)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999985 4444444
No 136
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.78 E-value=1.8e-07 Score=74.64 Aligned_cols=119 Identities=16% Similarity=0.146 Sum_probs=95.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHc-
Q 029199 61 GSGGDSQGVEEYYKKMVEENPGNPLFL---SNYAQFLYQSKQDLPKAEEYYSRAILADPGDG---EILSQYAKLVWELH- 133 (197)
Q Consensus 61 ~~~g~~~~A~~~~~~al~~~P~~~~~~---~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~lg~~l~~~~- 133 (197)
...|++++|++.|++++...|..+.+. +.+|.+++. .+++++|+..|++.++++|+++ .+++.+|.+...++
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~ 121 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDD 121 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcch
Confidence 446999999999999999999997765 789988888 9999999999999999998776 56788887654332
Q ss_pred -------------CC---HHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCccccccCCCcc
Q 029199 134 -------------ND---QDRAATYYERAVHASPEDSHVH-----------------ASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 134 -------------~~---~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+| ..+|+..|++.++..|+...+- +..|..|.+.|++..|..-++.+
T Consensus 122 ~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v 201 (243)
T PRK10866 122 SALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQM 201 (243)
T ss_pred hhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 12 3478899999999999866432 45677899999998876555554
No 137
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.77 E-value=1.4e-08 Score=82.96 Aligned_cols=116 Identities=15% Similarity=0.035 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQ--DLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAA 140 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g--~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~ 140 (197)
.++.+.|.+.++..-+.+.+..-+...-+.+... .| ++++|...|+......|.++.+++.++.+...+|+ +++|.
T Consensus 144 ~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~-~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~-~~eAe 221 (290)
T PF04733_consen 144 MNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLA-TGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGH-YEEAE 221 (290)
T ss_dssp TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHH-HTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT--HHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-hCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC-HHHHH
Confidence 5999999999999888877655444433433333 34 68999999999888888999999999999999885 99999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCccc-cccCCCcc
Q 029199 141 TYYERAVHASPEDSHVHASYAGFLWETEEDND-ECDAPSEL 180 (197)
Q Consensus 141 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e-a~~~~~~~ 180 (197)
+.+++++..+|++++++.|++.+...+|+..+ ..+.+.++
T Consensus 222 ~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 222 ELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 99999999999999999999999999999855 44455544
No 138
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.77 E-value=7.4e-08 Score=72.85 Aligned_cols=153 Identities=14% Similarity=0.095 Sum_probs=121.2
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHH-hCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVE-ENP 81 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~P 81 (197)
|++++++..++-++.+.....+..|.... .+..|..+..+ |++.+|...|++++. +.-
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~ApTvqn-r~rLa~al~el--------------------Gr~~EA~~hy~qalsG~fA 121 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAIAPTVQN-RYRLANALAEL--------------------GRYHEAVPHYQQALSGIFA 121 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhhchhHHH-HHHHHHHHHHh--------------------hhhhhhHHHHHHHhccccC
Confidence 34555555555555555554455554432 34455556554 999999999999875 678
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 029199 82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADP--GDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHAS 159 (197)
Q Consensus 82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P--~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 159 (197)
+++..+..++...+. .+++..|...+++..+.+| ..|+.+..+|..|...|+ +.+|...|+.++...|+ +.+...
T Consensus 122 ~d~a~lLglA~Aqfa-~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~-~a~Aesafe~a~~~ypg-~~ar~~ 198 (251)
T COG4700 122 HDAAMLLGLAQAQFA-IQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGK-YADAESAFEVAISYYPG-PQARIY 198 (251)
T ss_pred CCHHHHHHHHHHHHh-hccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCC-chhHHHHHHHHHHhCCC-HHHHHH
Confidence 899999999999998 9999999999999999988 577888889999999886 88999999999999986 788889
Q ss_pred HHHHHHHcCCccccccCCCc
Q 029199 160 YAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 160 la~~~~~~g~~~ea~~~~~~ 179 (197)
++..+.++|+.+|+..-+..
T Consensus 199 Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 199 YAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHhcchhHHHHHHHH
Confidence 99999999999987544433
No 139
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.76 E-value=1.8e-07 Score=74.64 Aligned_cols=151 Identities=10% Similarity=-0.006 Sum_probs=118.6
Q ss_pred hhHHHHHHHHhhhcCcccccCCCChhhH---HhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 6 LSEEVKVMEALWNAGFEQERGTVGQEMY---LAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
+-+.|++.+|+..|...+...|.++... +..|...-. .+++++|+..|++.++.+|+
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~--------------------~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK--------------------NADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh--------------------cCCHHHHHHHHHHHHHhCcC
Confidence 3456889999999999999999987655 555655555 49999999999999999998
Q ss_pred CH---HHHHHHHHHHHHhcC------------------CHHHHHHHHHHHHHhCCCCHHHH-----------------HH
Q 029199 83 NP---LFLSNYAQFLYQSKQ------------------DLPKAEEYYSRAILADPGDGEIL-----------------SQ 124 (197)
Q Consensus 83 ~~---~~~~~la~~l~~~~g------------------~~~~A~~~~~~al~l~P~~~~~~-----------------~~ 124 (197)
++ .+++.+|.+.+. .+ ...+|+..|++.++..|++..+. +.
T Consensus 102 ~~~~~~a~Y~~g~~~~~-~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ 180 (243)
T PRK10866 102 HPNIDYVLYMRGLTNMA-LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELS 180 (243)
T ss_pred CCchHHHHHHHHHhhhh-cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 84 467777855322 22 13578899999999999987442 23
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCccccccCCC
Q 029199 125 YAKLVWELHNDQDRAATYYERAVHASPE---DSHVHASYAGFLWETEEDNDECDAPS 178 (197)
Q Consensus 125 lg~~l~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~ea~~~~~ 178 (197)
.|..|++.+. +.-|+.-++..++..|+ .+++++.++..+..+|..+++.+..+
T Consensus 181 ia~~Y~~~~~-y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 181 VAEYYTKRGA-YVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHcCc-hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4566888775 89999999999999876 55788999999999999999866544
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.74 E-value=6.3e-08 Score=71.02 Aligned_cols=82 Identities=20% Similarity=0.231 Sum_probs=71.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRA 139 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A 139 (197)
.|++++|+..|++++...|+. +.+...++.++.. .|++++|+..++. +.-.+-.+.++..+|.++...| ++++|
T Consensus 61 ~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g-~~~~A 137 (145)
T PF09976_consen 61 QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-QGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQG-DYDEA 137 (145)
T ss_pred CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCC-CHHHH
Confidence 499999999999999988776 4578889988887 9999999999977 4556778889999999999988 59999
Q ss_pred HHHHHHHH
Q 029199 140 ATYYERAV 147 (197)
Q Consensus 140 ~~~~~~al 147 (197)
+..|++||
T Consensus 138 ~~~y~~Al 145 (145)
T PF09976_consen 138 RAAYQKAL 145 (145)
T ss_pred HHHHHHhC
Confidence 99999985
No 141
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.73 E-value=2e-08 Score=82.04 Aligned_cols=131 Identities=18% Similarity=0.151 Sum_probs=100.4
Q ss_pred HHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199 8 EEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFL 87 (197)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 87 (197)
.++|+..|...|..+.+.+.++.-..++.++.--..| +.++.+|...|++.....|.++..+
T Consensus 143 ~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g------------------~e~~~~A~y~f~El~~~~~~t~~~l 204 (290)
T PF04733_consen 143 KMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG------------------GEKYQDAFYIFEELSDKFGSTPKLL 204 (290)
T ss_dssp HTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT------------------TTCCCHHHHHHHHHHCCS--SHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC------------------chhHHHHHHHHHHHHhccCCCHHHH
Confidence 4567777777777777777666666666665432222 1578999999999888888999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199 88 SNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVH 157 (197)
Q Consensus 88 ~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~ 157 (197)
+.++.+... +|++++|+..+++++..+|++++++.|+..+...+|+..+.+.+++.+....+|+++-+.
T Consensus 205 ng~A~~~l~-~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 205 NGLAVCHLQ-LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHHHHHHHH-CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HHHHHHHHH-hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 999977666 999999999999999999999999999998888878644678889999888999988653
No 142
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=6.8e-08 Score=75.42 Aligned_cols=90 Identities=17% Similarity=0.115 Sum_probs=83.2
Q ss_pred cccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 029199 58 YPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQD 137 (197)
Q Consensus 58 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~ 137 (197)
..|.....|+.|+.+|.++|.++|..+..|.|.+.++++ ..+++......+++++++|+....++.+|.++.+..+ ++
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~-~~ 95 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG-YD 95 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc-cc
Confidence 445556889999999999999999999999999988887 9999999999999999999999999999999999887 89
Q ss_pred HHHHHHHHHHHh
Q 029199 138 RAATYYERAVHA 149 (197)
Q Consensus 138 ~A~~~~~~al~~ 149 (197)
+|+.++.+|..+
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 999999999655
No 143
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=5.9e-08 Score=81.08 Aligned_cols=155 Identities=12% Similarity=0.050 Sum_probs=106.4
Q ss_pred CCcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCC
Q 029199 2 AGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENP 81 (197)
Q Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P 81 (197)
.|.++=++.++.-|+.--.+.+..+|.+-+.++-+|-.+-.. |+.++|+=.|+.|..+.|
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~--------------------~R~~~A~IaFR~Aq~Lap 365 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIAL--------------------ERHTQAVIAFRTAQMLAP 365 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhc--------------------cchHHHHHHHHHHHhcch
Confidence 456667778888888888888889999999999999887764 555666666666666666
Q ss_pred CCHHHHHHHHHHHHHhcC------------------------------------CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199 82 GNPLFLSNYAQFLYQSKQ------------------------------------DLPKAEEYYSRAILADPGDGEILSQY 125 (197)
Q Consensus 82 ~~~~~~~~la~~l~~~~g------------------------------------~~~~A~~~~~~al~l~P~~~~~~~~l 125 (197)
..-+.|-.|-.+|.. .| -.++|.+.++++|+++|....+-..+
T Consensus 366 ~rL~~Y~GL~hsYLA-~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~ 444 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLA-QKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLI 444 (564)
T ss_pred hhHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHH
Confidence 655555555544443 44 34556666677777777776666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 126 AKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 126 g~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
+.++..-|+ +++++..+++.|...|+ ...+..+|.++..++.++++.+.|+.
T Consensus 445 AEL~~~Eg~-~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 445 AELCQVEGP-TKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred HHHHHhhCc-cchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 666555454 66777777777776664 55667777777777777777766665
No 144
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.69 E-value=3.1e-08 Score=89.88 Aligned_cols=81 Identities=16% Similarity=0.076 Sum_probs=58.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCC
Q 029199 98 KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAP 177 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~ 177 (197)
.+++.+|+..|+.+++.+|+|...|..+|.+|...|+ +.-|++.|.+|..++|++....+..+.+...+|++.++++.+
T Consensus 575 a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr-y~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l 653 (1238)
T KOG1127|consen 575 AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR-YSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDAL 653 (1238)
T ss_pred ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc-eehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4466777777777777777777777777777777776 677777777777777777777777777777777777776555
Q ss_pred Cc
Q 029199 178 SE 179 (197)
Q Consensus 178 ~~ 179 (197)
+.
T Consensus 654 ~~ 655 (1238)
T KOG1127|consen 654 GL 655 (1238)
T ss_pred HH
Confidence 54
No 145
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.69 E-value=6.3e-08 Score=85.49 Aligned_cols=136 Identities=14% Similarity=0.091 Sum_probs=117.7
Q ss_pred HHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 029199 9 EVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLS 88 (197)
Q Consensus 9 ~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~ 88 (197)
-.+|.++...|....+.+|-....|+..|-..-.| +++..|.++|..++.++|++.++|+
T Consensus 498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql--------------------ek~q~av~aF~rcvtL~Pd~~eaWn 557 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL--------------------EKEQAAVKAFHRCVTLEPDNAEAWN 557 (777)
T ss_pred chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH--------------------hhhHHHHHHHHHHhhcCCCchhhhh
Confidence 36788888888888899999999999998776665 8999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Q 029199 89 NYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS--PEDSHVHASYAGFLWE 166 (197)
Q Consensus 89 ~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~ 166 (197)
|++..+.+ .++-.+|...+.+|++.+-++..+|-|+-.+....|. +++|++.|.+.+.+. ..++.+...+.....+
T Consensus 558 Nls~ayi~-~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge-~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 558 NLSTAYIR-LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE-FEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred hhhHHHHH-HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhccc-HHHHHHHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence 99977776 9999999999999999999999999999999999995 999999999998764 3355555555544443
No 146
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.68 E-value=2.9e-08 Score=64.81 Aligned_cols=67 Identities=21% Similarity=0.407 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 029199 81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD-------PGDGEILSQYAKLVWELHNDQDRAATYYERAVHA 149 (197)
Q Consensus 81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~-------P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~ 149 (197)
|+-..++.++|.+++. +|++++|+++|++++++. |.-+.++.++|.++...|+ +++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRE-LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD-YEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh
Confidence 4456788999988887 999999999999999762 2235688999999999885 99999999999986
No 147
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=2.7e-08 Score=76.86 Aligned_cols=159 Identities=12% Similarity=0.060 Sum_probs=111.0
Q ss_pred ChhhHHhhhcccCCCCCCCCCCC-CCCCCCcccCCCCCHHHHHHHHHHHHHhC---C-CCHHHHHHHHHHHHHhcCCHHH
Q 029199 29 GQEMYLAKGLGVGGRGGRGGGTG-GGGSGFYPAGSGGDSQGVEEYYKKMVEEN---P-GNPLFLSNYAQFLYQSKQDLPK 103 (197)
Q Consensus 29 ~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~A~~~~~~al~~~---P-~~~~~~~~la~~l~~~~g~~~~ 103 (197)
.+.+.+..-+.+.+|....++.- .+...-+...-.=+.+--+.-+.+.+... | .-+..++.+| ++|...|-+.-
T Consensus 5 ~~~~~~~~~~~LagC~~~~~~~~~k~~~~~~~~qp~lqqEV~iarlsqlL~~~~l~~eeRA~l~fERG-vlYDSlGL~~L 83 (297)
T COG4785 5 LRWCFVATALTLAGCSNQNETFWRKSEVLAVPLQPTLQQEVILARMSQILASRALTDEERAQLLFERG-VLYDSLGLRAL 83 (297)
T ss_pred HHHHHHHHHHHHHhhccccCceecccceeeccCCccHHHHHHHHHHHHHHHhccCChHHHHHHHHHhc-chhhhhhHHHH
Confidence 34555666666777754222110 11111111111112233444455554432 2 2355788899 66666999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc-cc
Q 029199 104 AEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL-DS 182 (197)
Q Consensus 104 A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~-~~ 182 (197)
|+-.|.+++.+.|+-|++.+.+|..+...| +++.|.+.|...+++||.+..++.|+|..+.-.||+.-|.+++.+. .+
T Consensus 84 AR~DftQaLai~P~m~~vfNyLG~Yl~~a~-~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 84 ARNDFSQALAIRPDMPEVFNYLGIYLTQAG-NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HhhhhhhhhhcCCCcHHHHHHHHHHHHhcc-cchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 999999999999999999999998777766 6999999999999999999999999999999999999998777664 33
Q ss_pred cccchhh
Q 029199 183 NTLQIGH 189 (197)
Q Consensus 183 ~~~~~~~ 189 (197)
.+.+|++
T Consensus 163 D~~DPfR 169 (297)
T COG4785 163 DPNDPFR 169 (297)
T ss_pred CCCChHH
Confidence 3444544
No 148
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.64 E-value=2.1e-07 Score=72.16 Aligned_cols=117 Identities=16% Similarity=0.193 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCC-
Q 029199 63 GGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG---EILSQYAKLVWELHND- 135 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~lg~~l~~~~~~- 135 (197)
.|++.+|++.|++++...|.. +.+.+.+|..++. .|++++|+..|++.++..|+++ .+++.+|.+++.....
T Consensus 18 ~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~ 96 (203)
T PF13525_consen 18 QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-QGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGI 96 (203)
T ss_dssp CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccc
Confidence 599999999999999998886 6688899989898 9999999999999999999877 5788889887665321
Q ss_pred ---------HHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCccccccCCCcc
Q 029199 136 ---------QDRAATYYERAVHASPEDSHVH-----------------ASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 136 ---------~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
..+|+..|+..++..|+.+.+- +..|..|.+.|++..|..-++.+
T Consensus 97 ~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v 167 (203)
T PF13525_consen 97 LRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYV 167 (203)
T ss_dssp H-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHH
T ss_pred hhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3589999999999999876442 46688899999999987666554
No 149
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.64 E-value=6.5e-07 Score=64.05 Aligned_cols=87 Identities=23% Similarity=0.210 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG----EILSQYAKLVWELHNDQDR 138 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~----~~~~~lg~~l~~~~~~~~~ 138 (197)
.|+++.|++.|.+++.+-|..+.+|+|.+..+.. +|+.++|++.+++++++..+.. .++...|.+|...|+ -++
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~-dd~ 133 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPERASAYNNRAQALRL-QGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN-DDA 133 (175)
T ss_pred ccchHHHHHHHHHHHHhcccchHhhccHHHHHHH-cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc-hHH
Confidence 4777888888888888888888888888877766 7888888888888887754333 345667777777665 477
Q ss_pred HHHHHHHHHHhCC
Q 029199 139 AATYYERAVHASP 151 (197)
Q Consensus 139 A~~~~~~al~~~p 151 (197)
|..-|+.+-++-+
T Consensus 134 AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 134 ARADFEAAAQLGS 146 (175)
T ss_pred HHHhHHHHHHhCC
Confidence 7777777666544
No 150
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.63 E-value=4.3e-07 Score=76.95 Aligned_cols=116 Identities=22% Similarity=0.151 Sum_probs=96.9
Q ss_pred hhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHH
Q 029199 6 LSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPL 85 (197)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~ 85 (197)
+...+++..|+..|....+.+|... +++++-.. . .++-.+|++.++++++.+|++..
T Consensus 179 l~~t~~~~~ai~lle~L~~~~pev~-~~LA~v~l--~--------------------~~~E~~AI~ll~~aL~~~p~d~~ 235 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERDPEVA-VLLARVYL--L--------------------MNEEVEAIRLLNEALKENPQDSE 235 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcCCcHH-HHHHHHHH--h--------------------cCcHHHHHHHHHHHHHhCCCCHH
Confidence 3445678889999988888887633 22332221 1 26778999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029199 86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERA 146 (197)
Q Consensus 86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~a 146 (197)
.+...+.++.. .++++.|+.+.++++.+.|++...|+.++.+|..+| ++++|+..+..+
T Consensus 236 LL~~Qa~fLl~-k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~-d~e~ALlaLNs~ 294 (395)
T PF09295_consen 236 LLNLQAEFLLS-KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLG-DFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcC-CHHHHHHHHhcC
Confidence 99999989888 999999999999999999999999999999999988 599999877654
No 151
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.62 E-value=2e-07 Score=75.76 Aligned_cols=168 Identities=15% Similarity=0.036 Sum_probs=112.5
Q ss_pred HHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC-------CCCCCCCCC--------------------------
Q 029199 11 KVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG-------GTGGGGSGF-------------------------- 57 (197)
Q Consensus 11 ~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~-------------------------- 57 (197)
+..+|+..|-.+.+.+|..-+.+++.|--+...|-.+. .-.+|+...
T Consensus 50 Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~ 129 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDI 129 (389)
T ss_pred CcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 34567777777777778777888877766655543111 001122110
Q ss_pred -------------------cccCCCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029199 58 -------------------YPAGSGGDSQGVEEYYKKMVEENPGN-----PLFLSNYAQFLYQSKQDLPKAEEYYSRAIL 113 (197)
Q Consensus 58 -------------------~~~~~~g~~~~A~~~~~~al~~~P~~-----~~~~~~la~~l~~~~g~~~~A~~~~~~al~ 113 (197)
..+....++++|+..-++..++.|+. +..+..|+..... ..+.++|+..+.+|++
T Consensus 130 f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~-~~~~d~A~~~l~kAlq 208 (389)
T COG2956 130 FNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA-SSDVDRARELLKKALQ 208 (389)
T ss_pred HHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHh
Confidence 13344467777777777777777665 3345566655554 6778888888888888
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 114 ADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED-SHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 114 l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
-||+..-+-..+|.+....| ++++|++.++++++.||+. +++.-.+-.||.++|+.++....+.+.
T Consensus 209 a~~~cvRAsi~lG~v~~~~g-~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 209 ADKKCVRASIILGRVELAKG-DYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred hCccceehhhhhhHHHHhcc-chHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 88888888888888877766 4788888888888888774 456777788888888888876666554
No 152
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.60 E-value=1.4e-07 Score=54.98 Aligned_cols=41 Identities=24% Similarity=0.197 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199 85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYA 126 (197)
Q Consensus 85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg 126 (197)
.+|..+|.++.. .|++++|++.|+++++.+|+|+.+|..+|
T Consensus 2 ~~~~~la~~~~~-~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRR-LGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 345556655554 66666666666666666666666665555
No 153
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.59 E-value=2.8e-07 Score=71.51 Aligned_cols=149 Identities=14% Similarity=0.106 Sum_probs=112.3
Q ss_pred cchhHHHHHHHHhhhcCcccccCCCCh---hhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC
Q 029199 4 TALSEEVKVMEALWNAGFEQERGTVGQ---EMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN 80 (197)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 80 (197)
..+=+.|++.+|+..|...+...|.++ ...+..|.+... .|+++.|+..|++-++..
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~--------------------~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK--------------------QGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH--------------------TT-HHHHHHHHHHHHHH-
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHHC
Confidence 344567899999999999999999875 556666666655 499999999999999999
Q ss_pred CCCH---HHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHH
Q 029199 81 PGNP---LFLSNYAQFLYQS----------KQDLPKAEEYYSRAILADPGDGEIL-----------------SQYAKLVW 130 (197)
Q Consensus 81 P~~~---~~~~~la~~l~~~----------~g~~~~A~~~~~~al~l~P~~~~~~-----------------~~lg~~l~ 130 (197)
|+++ .+++.+|.+.+.. .+...+|+..|+..++..|+++.+. +..|..|+
T Consensus 73 P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~ 152 (203)
T PF13525_consen 73 PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYY 152 (203)
T ss_dssp TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9985 4778888666542 1234689999999999999987552 23467788
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCcccc
Q 029199 131 ELHNDQDRAATYYERAVHASPEDS---HVHASYAGFLWETEEDNDE 173 (197)
Q Consensus 131 ~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~ea 173 (197)
..+. +..|+..++.+++..|+.+ +++..++..+.++|..+.+
T Consensus 153 ~~~~-y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 153 KRGK-YKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp CTT--HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred Hccc-HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 8775 9999999999999999866 5688899999999988754
No 154
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.59 E-value=1.2e-07 Score=77.02 Aligned_cols=113 Identities=13% Similarity=0.129 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHH
Q 029199 66 SQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG-----EILSQYAKLVWELHNDQDRAA 140 (197)
Q Consensus 66 ~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~~lg~~l~~~~~~~~~A~ 140 (197)
++.|...|........--..+.-.|..+|.. ..++++|++.-++.+++.|+.- ..++.++..+.... +.++|.
T Consensus 123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~-treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~-~~d~A~ 200 (389)
T COG2956 123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQA-TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS-DVDRAR 200 (389)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh-hHHHHH
Confidence 3333444443333322234456666644444 7899999999999999987654 34556666655645 589999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 141 TYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 141 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
..+.+|++.+|+...+-..+|.+....|+++.|++.++++
T Consensus 201 ~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 201 ELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred HHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999888875
No 155
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.55 E-value=7.3e-07 Score=74.05 Aligned_cols=110 Identities=17% Similarity=0.126 Sum_probs=95.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYY 143 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~ 143 (197)
|++++|.+..+++++..-+.. ....++ .+ +-++..+=++..++.++..|++|..+..+|.++++.+ .|.+|.++|
T Consensus 277 ~~~~~A~~~i~~~Lk~~~D~~-L~~~~~-~l--~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~-~w~kA~~~l 351 (400)
T COG3071 277 GDHDEAQEIIEDALKRQWDPR-LCRLIP-RL--RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNK-LWGKASEAL 351 (400)
T ss_pred CChHHHHHHHHHHHHhccChh-HHHHHh-hc--CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh-HHHHHHHHH
Confidence 999999999999999876544 333333 32 2589999999999999999999999999999999977 599999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 144 ERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 144 ~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
+.|++..|+ ...+..+|.++.++|+..+|.+.++.
T Consensus 352 eaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 352 EAALKLRPS-ASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred HHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 999999986 77889999999999999999877766
No 156
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.54 E-value=8.9e-08 Score=52.66 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=16.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 029199 108 YSRAILADPGDGEILSQYAKLVWELHNDQDRAA 140 (197)
Q Consensus 108 ~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~ 140 (197)
|++||+++|+|+.+|+++|.+|...| ++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g-~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQG-DYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCc-CHHhhc
Confidence 45555555555555555555555544 245443
No 157
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.53 E-value=1.5e-07 Score=77.16 Aligned_cols=106 Identities=12% Similarity=-0.015 Sum_probs=96.7
Q ss_pred CCcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCC
Q 029199 2 AGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENP 81 (197)
Q Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P 81 (197)
+|+-|=..|++.|||.+|+.++..+|.+|-.+..+.+++-++ ..+..|....+.|+.+|-
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~--------------------K~FA~AE~DC~~AiaLd~ 162 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQ--------------------KSFAQAEEDCEAAIALDK 162 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHH--------------------HHHHHHHHhHHHHHHhhH
Confidence 588888899999999999999999999999999999998875 889999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKL 128 (197)
Q Consensus 82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~ 128 (197)
....+|..++..-.. +|+..+|.+.++.+|++.|++.+..-.++.+
T Consensus 163 ~Y~KAYSRR~~AR~~-Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 163 LYVKAYSRRMQARES-LGNNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHHHHHHHHHHHHH-HhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 999999999966666 9999999999999999999988877666644
No 158
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.53 E-value=2.4e-07 Score=53.92 Aligned_cols=43 Identities=21% Similarity=0.245 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199 119 GEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG 162 (197)
Q Consensus 119 ~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 162 (197)
|.++..+|.+|...|+ +++|+++|+++++.+|+|+.+|..+|.
T Consensus 1 p~~~~~la~~~~~~G~-~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQ-PDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4688999999999885 999999999999999999999999885
No 159
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.53 E-value=1.1e-06 Score=83.02 Aligned_cols=115 Identities=20% Similarity=0.154 Sum_probs=68.3
Q ss_pred CCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHH
Q 029199 62 SGGDSQGVEEYYKKMVEE--NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD-PGDGEILSQYAKLVWELHNDQDR 138 (197)
Q Consensus 62 ~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~l~~~~~~~~~ 138 (197)
+.|++++|++.|++..+. .|+ ...|..+...+.. .|++++|.+.++++.+.. +.+...+..+...|.+.|+ +++
T Consensus 626 k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k-~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~-~ee 702 (1060)
T PLN03218 626 QKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGH-AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN-WKK 702 (1060)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-HHH
Confidence 346666666666666554 343 3444555545454 666666666666666543 3345556666666666553 666
Q ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 139 AATYYERAVHA--SPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 139 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
|.+.|++.... .| +...|..+...|.+.|+.++|.+.|+++
T Consensus 703 A~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 703 ALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 66666666443 23 3556666666666666666666666654
No 160
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.51 E-value=4.5e-06 Score=60.74 Aligned_cols=93 Identities=16% Similarity=0.137 Sum_probs=74.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcC--
Q 029199 63 GGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG---EILSQYAKLVWELHN-- 134 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~lg~~l~~~~~-- 134 (197)
.|+|.+|++.|+.+....|-. ..+...++..++. .+++++|+..+++-++++|.++ .+++..|.+.+.+..
T Consensus 23 ~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~ 101 (142)
T PF13512_consen 23 KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGS 101 (142)
T ss_pred hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhH
Confidence 489999999999998888775 5577788888887 8999999999999999998877 467777877777541
Q ss_pred ------------CHHHHHHHHHHHHHhCCCCHHH
Q 029199 135 ------------DQDRAATYYERAVHASPEDSHV 156 (197)
Q Consensus 135 ------------~~~~A~~~~~~al~~~p~~~~~ 156 (197)
...+|...|++.++..|+...+
T Consensus 102 ~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 102 LQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 1567888888888888887654
No 161
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.50 E-value=6.5e-07 Score=71.31 Aligned_cols=92 Identities=20% Similarity=0.248 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 029199 87 LSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG---EILSQYAKLVWELHNDQDRAATYYERAVHASPE---DSHVHASY 160 (197)
Q Consensus 87 ~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l 160 (197)
.++.+.-++. .|+|..|+..|..-++..|+++ .+++.||.+++.+| ++++|...|..+++-.|+ -|+.++.+
T Consensus 144 ~Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg-~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYK-SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQG-DYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcc-cchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4555545555 7778888888888888877654 67777888888866 478888888888777654 45678888
Q ss_pred HHHHHHcCCccccccCCCcc
Q 029199 161 AGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 161 a~~~~~~g~~~ea~~~~~~~ 180 (197)
|.++.++|+.++||..++++
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 88888888888887777775
No 162
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.48 E-value=5e-06 Score=66.32 Aligned_cols=98 Identities=17% Similarity=0.267 Sum_probs=87.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcC
Q 029199 61 GSGGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD---GEILSQYAKLVWELHN 134 (197)
Q Consensus 61 ~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~l~~~~~ 134 (197)
...|+|..|.+.|..=++..|++ +.+++=||.++|. +|+++.|...|..+++-.|++ |++++.+|.++..+++
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-QGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-cccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 34599999999999999999997 6678889999998 999999999999999987755 5889999999999996
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199 135 DQDRAATYYERAVHASPEDSHVHASY 160 (197)
Q Consensus 135 ~~~~A~~~~~~al~~~p~~~~~~~~l 160 (197)
.++|...|++.++..|+.+.+....
T Consensus 231 -~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 231 -TDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred -HHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 8999999999999999988775543
No 163
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.48 E-value=1.8e-07 Score=51.47 Aligned_cols=34 Identities=32% Similarity=0.430 Sum_probs=30.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 029199 72 YYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEE 106 (197)
Q Consensus 72 ~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~ 106 (197)
+|+++|+++|+++.+|++||.++.. .|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~-~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLN-QGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHH-CcCHHhhcC
Confidence 4899999999999999999988887 999999863
No 164
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.47 E-value=1e-06 Score=63.07 Aligned_cols=88 Identities=14% Similarity=0.112 Sum_probs=77.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH
Q 029199 91 AQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED----SHVHASYAGFLWE 166 (197)
Q Consensus 91 a~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~ 166 (197)
|..+.. .|+.+.|++.|.+++.+-|.++.+++|.+..+.-.++ .++|++-+++++++..+. ..++...|.+|..
T Consensus 50 ~valaE-~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~-~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAE-AGDLDGALELFGQALCLAPERASAYNNRAQALRLQGD-DEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHh-ccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCC-hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 534445 8999999999999999999999999999999888775 799999999999997543 3568899999999
Q ss_pred cCCccccccCCCcc
Q 029199 167 TEEDNDECDAPSEL 180 (197)
Q Consensus 167 ~g~~~ea~~~~~~~ 180 (197)
+|+.+.|..+|...
T Consensus 128 ~g~dd~AR~DFe~A 141 (175)
T KOG4555|consen 128 LGNDDAARADFEAA 141 (175)
T ss_pred hCchHHHHHhHHHH
Confidence 99999999998874
No 165
>PLN03077 Protein ECB2; Provisional
Probab=98.45 E-value=8.4e-07 Score=82.47 Aligned_cols=168 Identities=9% Similarity=0.004 Sum_probs=121.4
Q ss_pred chhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC----------CCCCCCCCC-----cccCCCCCHHHH
Q 029199 5 ALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG----------GTGGGGSGF-----YPAGSGGDSQGV 69 (197)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~----------~~~~~~~~~-----~~~~~~g~~~~A 69 (197)
+|.+.|++++|...|+.. +.+...|...--++...|...+ .+..|+... ..|...|..++|
T Consensus 533 ~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea 608 (857)
T PLN03077 533 LYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQG 608 (857)
T ss_pred HHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHH
Confidence 455667888888888765 3455555555444444443211 234444332 245667999999
Q ss_pred HHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 029199 70 EEYYKKMVEENPG--NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAV 147 (197)
Q Consensus 70 ~~~~~~al~~~P~--~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al 147 (197)
.++|+...+..+- +...+..+...+.+ .|++++|.+.+++. ...|+ +.+|..+-..+.. +++.+.+....++++
T Consensus 609 ~~~f~~M~~~~gi~P~~~~y~~lv~~l~r-~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~-~~~~e~~e~~a~~l~ 684 (857)
T PLN03077 609 LEYFHSMEEKYSITPNLKHYACVVDLLGR-AGKLTEAYNFINKM-PITPD-PAVWGALLNACRI-HRHVELGELAAQHIF 684 (857)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHh-CCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHH-cCChHHHHHHHHHHH
Confidence 9999998854322 33566777767776 99999999999886 45665 6667776666655 556899999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 148 HASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 148 ~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+++|+++..+..++++|...|+++++.+..+.+
T Consensus 685 ~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 685 ELDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred hhCCCCcchHHHHHHHHHHCCChHHHHHHHHHH
Confidence 999999999999999999999999997766654
No 166
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.41 E-value=7.8e-07 Score=80.90 Aligned_cols=168 Identities=7% Similarity=-0.076 Sum_probs=83.4
Q ss_pred chhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC----------CCCCCCCC-----CcccCCCCCHHHH
Q 029199 5 ALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG----------GTGGGGSG-----FYPAGSGGDSQGV 69 (197)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~----------~~~~~~~~-----~~~~~~~g~~~~A 69 (197)
+|...|++.+|...|+.+.+. +...|....-++...|...+ .+..|+.. -..|...|++++|
T Consensus 268 ~y~k~g~~~~A~~vf~~m~~~---~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a 344 (697)
T PLN03081 268 MYSKCGDIEDARCVFDGMPEK---TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA 344 (697)
T ss_pred HHHHCCCHHHHHHHHHhCCCC---ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHH
Confidence 466778888888888877644 44555554444444322111 11122211 1122334555555
Q ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199 70 EEYYKKMVEEN-PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVH 148 (197)
Q Consensus 70 ~~~~~~al~~~-P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~ 148 (197)
.+.+...++.. +.+..+++.+...|.+ .|+.++|...|++..+ .|...|+.+...|.+.| +.++|++.|++.++
T Consensus 345 ~~i~~~m~~~g~~~d~~~~~~Li~~y~k-~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G-~~~~A~~lf~~M~~ 419 (697)
T PLN03081 345 KQAHAGLIRTGFPLDIVANTALVDLYSK-WGRMEDARNVFDRMPR---KNLISWNALIAGYGNHG-RGTKAVEMFERMIA 419 (697)
T ss_pred HHHHHHHHHhCCCCCeeehHHHHHHHHH-CCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 55555555543 3334444445544444 5555555555555432 23444555555555544 25555555555544
Q ss_pred hC-CCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 149 AS-PEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 149 ~~-p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.. ..|...+..+...+.+.|..+++...|+.+
T Consensus 420 ~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 420 EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 32 113444555555555555555555555554
No 167
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.41 E-value=3e-06 Score=80.08 Aligned_cols=174 Identities=15% Similarity=0.103 Sum_probs=120.3
Q ss_pred chhHHHHHHHHhhhcCcccccCC-CChhhHHhhhcccCCCCCCCC------------CCCCCCCCC-----cccCCCCCH
Q 029199 5 ALSEEVKVMEALWNAGFEQERGT-VGQEMYLAKGLGVGGRGGRGG------------GTGGGGSGF-----YPAGSGGDS 66 (197)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~~g~~~~~~~~~~~------------~~~~~~~~~-----~~~~~~g~~ 66 (197)
.|...|++.+|+..|..+.+.+. .|...|...--++...|..+. .+..|.... ..|...|++
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence 35566777777777777654432 223333333333333332111 112232111 134556899
Q ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199 67 QGVEEYYKKMVEEN-PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA--DPGDGEILSQYAKLVWELHNDQDRAATYY 143 (197)
Q Consensus 67 ~~A~~~~~~al~~~-P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~l~~~~~~~~~A~~~~ 143 (197)
++|.+.|++..+.+ +.+...|+.+...+.+ .|++++|+..|++..+. .|+ ...+..+...+...| ++++|.+.+
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k-~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G-~~eeA~~l~ 672 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ-KGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAG-DLDKAFEIL 672 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 99999999998876 4466777777767666 89999999999998876 454 567777778888877 489999999
Q ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCccccccCCCccc
Q 029199 144 ERAVHAS-PEDSHVHASYAGFLWETEEDNDECDAPSELD 181 (197)
Q Consensus 144 ~~al~~~-p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~ 181 (197)
+...+.. +.+...+..+...|.+.|+.++|...|+++.
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9998764 4468889999999999999999998888774
No 168
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.40 E-value=1e-06 Score=80.12 Aligned_cols=169 Identities=12% Similarity=0.022 Sum_probs=123.8
Q ss_pred chhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC----------CCCCCCCCC-----cccCCCCCHHHH
Q 029199 5 ALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG----------GTGGGGSGF-----YPAGSGGDSQGV 69 (197)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~----------~~~~~~~~~-----~~~~~~g~~~~A 69 (197)
+|.+.|++.+|...|+.+.+. |...|....-++...|...+ .+..|+... ..|...|..++|
T Consensus 369 ~y~k~G~~~~A~~vf~~m~~~---d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a 445 (697)
T PLN03081 369 LYSKWGRMEDARNVFDRMPRK---NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445 (697)
T ss_pred HHHHCCCHHHHHHHHHhCCCC---CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHH
Confidence 466778899999999888764 44455555445544443211 233444322 245667999999
Q ss_pred HHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 029199 70 EEYYKKMVEENPGN--PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAV 147 (197)
Q Consensus 70 ~~~~~~al~~~P~~--~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al 147 (197)
.++|+...+..+-. ...|..+...+.+ .|++++|.+.+++. ...| +..+|..+...+...| +++.|...+++.+
T Consensus 446 ~~~f~~m~~~~g~~p~~~~y~~li~~l~r-~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g-~~~~a~~~~~~l~ 521 (697)
T PLN03081 446 WEIFQSMSENHRIKPRAMHYACMIELLGR-EGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHK-NLELGRLAAEKLY 521 (697)
T ss_pred HHHHHHHHHhcCCCCCccchHhHHHHHHh-cCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcC-CcHHHHHHHHHHh
Confidence 99999987643322 3345666666666 99999999998875 2344 4567888888877766 5999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 148 HASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 148 ~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.+.|++...|..+..+|.+.|++++|.+.++.+
T Consensus 522 ~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 522 GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999999999999999998888776
No 169
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.39 E-value=7.8e-06 Score=60.85 Aligned_cols=115 Identities=24% Similarity=0.308 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHH
Q 029199 63 GGDSQGVEEYYKKMVEENP---GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG-DGEILSQYAKLVWELHNDQDR 138 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P---~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~l~~~~~~~~~ 138 (197)
.|+++.|...|++++..+| .....+..++..+.. .+++++++..+.+++...|. ....+..++..+...+ ++++
T Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 220 (291)
T COG0457 143 LGDYEEALELYEKALELDPELNELAEALLALGALLEA-LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG-KYEE 220 (291)
T ss_pred cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH-hcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc-cHHH
Confidence 4778888888888777666 344555555544444 67888888888888888777 5777777877777766 4778
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 139 AATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 139 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
|...+.+++...|.....+..++..+...++.+++...+.+
T Consensus 221 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (291)
T COG0457 221 ALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEK 261 (291)
T ss_pred HHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHH
Confidence 88888888888777667777777777755656666554444
No 170
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=1e-06 Score=67.50 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199 87 LSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG-----EILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYA 161 (197)
Q Consensus 87 ~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 161 (197)
+..=|+-++. .|+|.+|..-|..||.+-|.-+ ..+.|.|.++.+++. ++.|++.+.++++++|.+..++..++
T Consensus 98 lK~EGN~~F~-ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k-~e~aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 98 LKKEGNELFK-NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRK-WESAIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred HHHHHHHhhh-cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhh-HHHHHHHHHhhHhcCchhHHHHHHHH
Confidence 3445778887 9999999999999999999765 467788999999996 99999999999999999999999999
Q ss_pred HHHHHcCCccccccCCCcc
Q 029199 162 GFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 162 ~~~~~~g~~~ea~~~~~~~ 180 (197)
..|.++.++++|+.+|..+
T Consensus 176 eayek~ek~eealeDyKki 194 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKI 194 (271)
T ss_pred HHHHhhhhHHHHHHHHHHH
Confidence 9999999999999988876
No 171
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.38 E-value=6.5e-07 Score=76.07 Aligned_cols=112 Identities=17% Similarity=0.110 Sum_probs=98.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 029199 60 AGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRA 139 (197)
Q Consensus 60 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A 139 (197)
+...++++.|+..|.++|+++|+++..+-+++..+.+ .+++..|+..+.+|++++|...-+++..|.+...+++ +.+|
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK-~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~-~~~A 91 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK-VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE-FKKA 91 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhhee-echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH-HHHH
Confidence 3445899999999999999999999999999966665 9999999999999999999999999999999999886 9999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCcccc
Q 029199 140 ATYYERAVHASPEDSHVHASYAGFLWET--EEDNDE 173 (197)
Q Consensus 140 ~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~ea 173 (197)
+..|++...+.|+++.+...+-.|-... -+++.+
T Consensus 92 ~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~a 127 (476)
T KOG0376|consen 92 LLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKA 127 (476)
T ss_pred HHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999987777664443 344444
No 172
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=2.5e-06 Score=74.06 Aligned_cols=147 Identities=17% Similarity=0.080 Sum_probs=92.6
Q ss_pred hHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 029199 7 SEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLF 86 (197)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 86 (197)
...+++++|+...++.+...|+++.....+-+.+-.. ++|++|++..++-....-.+..
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~--------------------~ky~~ALk~ikk~~~~~~~~~~- 81 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQL--------------------DKYEDALKLIKKNGALLVINSF- 81 (652)
T ss_pred ccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhh--------------------hHHHHHHHHHHhcchhhhcchh-
Confidence 4567889999999999999999998888888887765 4555555332222111111111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------
Q 029199 87 LSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAV------------------- 147 (197)
Q Consensus 87 ~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al------------------- 147 (197)
.+..+.|.|+ .++.++|+.+++ -+++.+..+....|.+++.+++ |++|.+.|+..+
T Consensus 82 ~fEKAYc~Yr-lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~-ydealdiY~~L~kn~~dd~d~~~r~nl~a~~ 156 (652)
T KOG2376|consen 82 FFEKAYCEYR-LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLER-YDEALDIYQHLAKNNSDDQDEERRANLLAVA 156 (652)
T ss_pred hHHHHHHHHH-cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 1344555555 566666666555 3445555555555555555554 556655555542
Q ss_pred -----------HhCCC-CHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 148 -----------HASPE-DSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 148 -----------~~~p~-~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
...|+ ..+.+||.+.++...|++.+|++.++.
T Consensus 157 a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~k 200 (652)
T KOG2376|consen 157 AALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEK 200 (652)
T ss_pred HhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 23343 556789999999999999999877766
No 173
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=4e-07 Score=71.17 Aligned_cols=88 Identities=16% Similarity=0.189 Sum_probs=81.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 029199 91 AQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEED 170 (197)
Q Consensus 91 a~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 170 (197)
|+.++. ..++..|+.+|-+++.++|..+..+.|.+.++.++++ ++....-.+++++++|+-...++.+|.++.....+
T Consensus 17 gnk~f~-~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~-~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 17 GNKCFI-PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKH-WEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccccc-hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhh-hhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 445565 6789999999999999999999999999999999885 99999999999999999999999999999999999
Q ss_pred cccccCCCcc
Q 029199 171 NDECDAPSEL 180 (197)
Q Consensus 171 ~ea~~~~~~~ 180 (197)
++++..+++.
T Consensus 95 ~eaI~~Lqra 104 (284)
T KOG4642|consen 95 DEAIKVLQRA 104 (284)
T ss_pred cHHHHHHHHH
Confidence 9998877774
No 174
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.37 E-value=4.6e-06 Score=60.69 Aligned_cols=84 Identities=19% Similarity=0.120 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HH
Q 029199 84 PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG---EILSQYAKLVWELHNDQDRAATYYERAVHASPEDSH---VH 157 (197)
Q Consensus 84 ~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~---~~ 157 (197)
+..++.-|.-.+. .|++++|++.|+......|..+ .+...++.+++..+ ++++|+..+++-++++|.++. ++
T Consensus 10 ~~~ly~~a~~~l~-~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~-~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 10 PQELYQEAQEALQ-KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQG-DYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred HHHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 5567778877777 8999999999999999988654 68899999999977 599999999999999998874 68
Q ss_pred HHHHHHHHHcCC
Q 029199 158 ASYAGFLWETEE 169 (197)
Q Consensus 158 ~~la~~~~~~g~ 169 (197)
+..|.++..+.+
T Consensus 88 Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 88 YMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHhh
Confidence 899999988865
No 175
>PLN03077 Protein ECB2; Provisional
Probab=98.36 E-value=2e-06 Score=80.00 Aligned_cols=128 Identities=8% Similarity=-0.020 Sum_probs=98.6
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCH
Q 029199 59 PAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA--DPGDGEILSQYAKLVWELHNDQ 136 (197)
Q Consensus 59 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~l~~~~~~~ 136 (197)
.+.+.|+.++|.+.|++. +.+...|+.+...+.. .|+.++|++.|++..+. .|+......-+ ..+...| ..
T Consensus 533 ~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~-~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll-~a~~~~g-~v 605 (857)
T PLN03077 533 LYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVA-HGKGSMAVELFNRMVESGVNPDEVTFISLL-CACSRSG-MV 605 (857)
T ss_pred HHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCcccHHHHH-HHHhhcC-hH
Confidence 344569999999999886 5678889988877776 99999999999998874 57766654444 4567767 59
Q ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCccccccCCCcccccccchhhhhhh
Q 029199 137 DRAATYYERAVHAS--PEDSHVHASYAGFLWETEEDNDECDAPSELDSNTLQIGHAAVA 193 (197)
Q Consensus 137 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~~~~~~~~~~~~~ 193 (197)
++|.++|+...+.. ..+...+..+..++.+.|+.++|.+.++++|--+....+.++.
T Consensus 606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl 664 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALL 664 (857)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHH
Confidence 99999999998543 2246789999999999999999999999986444444444433
No 176
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=8.2e-07 Score=71.80 Aligned_cols=152 Identities=14% Similarity=0.073 Sum_probs=124.7
Q ss_pred hHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 029199 7 SEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLF 86 (197)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 86 (197)
...-|+.++|+.+..-.|+.|.+-..+-..|..+.. ..++..|..||++.-.+.|.....
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~--------------------~Q~f~~AA~CYeQL~ql~P~~~qY 80 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYR--------------------LQEFALAAECYEQLGQLHPELEQY 80 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHhhChHHHHH
Confidence 567799999999999999999777666666666555 389999999999999999999988
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH----------HH--------------------hCC--CCHHHHHHHHHHHHHHcC
Q 029199 87 LSNYAQFLYQSKQDLPKAEEYYSRA----------IL--------------------ADP--GDGEILSQYAKLVWELHN 134 (197)
Q Consensus 87 ~~~la~~l~~~~g~~~~A~~~~~~a----------l~--------------------l~P--~~~~~~~~lg~~l~~~~~ 134 (197)
.+-.+..+|. .+.+..|+...... ++ .-| ++++...+.|-++++.|+
T Consensus 81 rlY~AQSLY~-A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 81 RLYQAQSLYK-ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHHHHHHH-hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeecccc
Confidence 8888888887 78777765443322 22 234 577888899988888774
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 135 DQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 135 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
++.|++-|+.|++...-+|-+-++++.+..+.|+++.|.+..+++
T Consensus 160 -yEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 160 -YEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEI 204 (459)
T ss_pred -HHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998776664
No 177
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.33 E-value=2.9e-06 Score=77.48 Aligned_cols=162 Identities=9% Similarity=-0.073 Sum_probs=128.3
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC----------------CCCCCCCCCcccCCCCCH
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG----------------GTGGGGSGFYPAGSGGDS 66 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~----------------~~~~~~~~~~~~~~~g~~ 66 (197)
|-+|.+-+...-|-.+|+++-+.|+.+.+.+-+..-........+. -...|..+|..+...+++
T Consensus 499 G~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~ 578 (1238)
T KOG1127|consen 499 GQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNL 578 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccch
Confidence 4556666667778888888888999887776554443333322111 112444567777778999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029199 67 QGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERA 146 (197)
Q Consensus 67 ~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~a 146 (197)
..|+..|+.+++.+|++...|..+|..|.. .|++.-|++.|.+|..++|.+....+..+.+...+|+ +++|++.+...
T Consensus 579 h~aV~~fQsALR~dPkD~n~W~gLGeAY~~-sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~Gk-Ykeald~l~~i 656 (1238)
T KOG1127|consen 579 HGAVCEFQSALRTDPKDYNLWLGLGEAYPE-SGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGK-YKEALDALGLI 656 (1238)
T ss_pred hhHHHHHHHHhcCCchhHHHHHHHHHHHHh-cCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhh-HHHHHHHHHHH
Confidence 999999999999999999999999988888 9999999999999999999999999999999999996 99999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHH
Q 029199 147 VHASPEDSHVHASYAGFLWE 166 (197)
Q Consensus 147 l~~~p~~~~~~~~la~~~~~ 166 (197)
+......-.+...++.++.+
T Consensus 657 i~~~s~e~~~q~gLaE~~ir 676 (1238)
T KOG1127|consen 657 IYAFSLERTGQNGLAESVIR 676 (1238)
T ss_pred HHHHHHHHHhhhhHHHHHHH
Confidence 88776655555555555544
No 178
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.33 E-value=5.4e-07 Score=67.70 Aligned_cols=106 Identities=14% Similarity=0.068 Sum_probs=74.4
Q ss_pred HHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199 12 VMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYA 91 (197)
Q Consensus 12 ~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la 91 (197)
++.|...+...-..+|.|++.+..=|.+|..++.+..+. ....-+++|+.-|++||.++|+...++.++|
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~----------es~~miedAisK~eeAL~I~P~~hdAlw~lG 76 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGP----------ESKKMIEDAISKFEEALKINPNKHDALWCLG 76 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HH----------HHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcc----------hHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344555555555779999999999999987764321000 0013468899999999999999999999999
Q ss_pred HHHHHhcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 92 QFLYQSKQ-----------DLPKAEEYYSRAILADPGDGEILSQYAKL 128 (197)
Q Consensus 92 ~~l~~~~g-----------~~~~A~~~~~~al~l~P~~~~~~~~lg~~ 128 (197)
+.+.. .+ -|++|..+|++|+..+|+|..++..+...
T Consensus 77 nA~ts-~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 77 NAYTS-LAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHH-HHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 88876 55 47889999999999999999887777643
No 179
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.27 E-value=3e-06 Score=45.96 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 029199 85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD 118 (197)
Q Consensus 85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~ 118 (197)
.+|+.+|.+++. +|++++|+++|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQ-LGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcCC
Confidence 345555544444 555555555555555555543
No 180
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.27 E-value=2.1e-06 Score=46.81 Aligned_cols=32 Identities=34% Similarity=0.450 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 029199 85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG 117 (197)
Q Consensus 85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~ 117 (197)
.+|+++|.++.. +|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQ-LGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHH-hCCchHHHHHHHHHHHHCcC
Confidence 345555544444 55555555555555555554
No 181
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.26 E-value=1.2e-05 Score=59.85 Aligned_cols=148 Identities=22% Similarity=0.176 Sum_probs=110.8
Q ss_pred HHHHHHhhhcCcccc--cCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199 10 VKVMEALWNAGFEQE--RGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFL 87 (197)
Q Consensus 10 ~~~~~a~~~~~~~~~--~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 87 (197)
+....++..+..... ..+.....+...|..... .+++..+++.+.+++..++.+....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (291)
T COG0457 73 GRLEEALELLEKALELELLPNLAEALLNLGLLLEA--------------------LGKYEEALELLEKALALDPDPDLAE 132 (291)
T ss_pred ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH--------------------HhhHHHHHHHHHHHHcCCCCcchHH
Confidence 334444444444333 455555666666655544 3778999999999999888875555
Q ss_pred HHHHH-HHHHhcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Q 029199 88 SNYAQ-FLYQSKQDLPKAEEYYSRAILADP---GDGEILSQYAKLVWELHNDQDRAATYYERAVHASPE-DSHVHASYAG 162 (197)
Q Consensus 88 ~~la~-~l~~~~g~~~~A~~~~~~al~l~P---~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~ 162 (197)
...+. ++.. .+++++|...|++++..+| .........+..+...+ ++++++..+.+++...|. ....+..++.
T Consensus 133 ~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (291)
T COG0457 133 ALLALGALYE-LGDYEEALELYEKALELDPELNELAEALLALGALLEALG-RYEEALELLEKALKLNPDDDAEALLNLGL 210 (291)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhc-CHHHHHHHHHHHHhhCcccchHHHHHhhH
Confidence 55554 5666 9999999999999998887 45666667776666766 489999999999999999 6999999999
Q ss_pred HHHHcCCccccccCCCc
Q 029199 163 FLWETEEDNDECDAPSE 179 (197)
Q Consensus 163 ~~~~~g~~~ea~~~~~~ 179 (197)
++...++++++...+..
T Consensus 211 ~~~~~~~~~~a~~~~~~ 227 (291)
T COG0457 211 LYLKLGKYEEALEYYEK 227 (291)
T ss_pred HHHHcccHHHHHHHHHH
Confidence 99999988888766655
No 182
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=4.3e-06 Score=72.67 Aligned_cols=112 Identities=14% Similarity=0.059 Sum_probs=92.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
.|+|++|++...+.+...|++..+...--.++.. .++|++|+...++-..+.-.+... +..+.|.|++++ .++|+.+
T Consensus 25 ~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq-~~ky~~ALk~ikk~~~~~~~~~~~-fEKAYc~Yrlnk-~Dealk~ 101 (652)
T KOG2376|consen 25 NGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQ-LDKYEDALKLIKKNGALLVINSFF-FEKAYCEYRLNK-LDEALKT 101 (652)
T ss_pred chHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhh-hhHHHHHHHHHHhcchhhhcchhh-HHHHHHHHHccc-HHHHHHH
Confidence 5999999999999999999999988866645555 899999996655544332223222 688999999997 8999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+. .+++.+..+..-.|.+++++|+|+++.+.|+.+
T Consensus 102 ~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L 136 (652)
T KOG2376|consen 102 LK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHL 136 (652)
T ss_pred Hh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99 557777889999999999999999999999987
No 183
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.17 E-value=3.8e-06 Score=45.74 Aligned_cols=34 Identities=24% Similarity=0.512 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 029199 119 GEILSQYAKLVWELHNDQDRAATYYERAVHASPED 153 (197)
Q Consensus 119 ~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~ 153 (197)
+.+|+++|.++..+++ +++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGD-YEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCC-chHHHHHHHHHHHHCcCC
Confidence 4689999999999885 999999999999999974
No 184
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=98.17 E-value=3.9e-05 Score=65.80 Aligned_cols=93 Identities=14% Similarity=0.310 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 029199 68 GVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAV 147 (197)
Q Consensus 68 ~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al 147 (197)
.=...|+.++...+.|...|.++..+..+ .+.+.+--..|.+++..+|++|++|..-+...+..+...+.|...|.++|
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk-~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKK-KKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHH-hcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 44678999999999999999999966665 77799999999999999999999999999999998877999999999999
Q ss_pred HhCCCCHHHHHHHH
Q 029199 148 HASPEDSHVHASYA 161 (197)
Q Consensus 148 ~~~p~~~~~~~~la 161 (197)
+.+|++|..|.-+-
T Consensus 168 R~npdsp~Lw~eyf 181 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYF 181 (568)
T ss_pred hcCCCChHHHHHHH
Confidence 99999999886443
No 185
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.17 E-value=5.8e-06 Score=44.82 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 029199 119 GEILSQYAKLVWELHNDQDRAATYYERAVHASPED 153 (197)
Q Consensus 119 ~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~ 153 (197)
+.+++.+|.+++..|+ +++|+++|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~-~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGN-YEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHCcCC
Confidence 5789999999999885 999999999999999986
No 186
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.14 E-value=4.9e-07 Score=58.94 Aligned_cols=63 Identities=16% Similarity=0.301 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCC---HHHHHHHHHHHHHcCCccccccCCCc
Q 029199 116 PGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS----PED---SHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 116 P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~----p~~---~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
|+-..++.++|.++..+|+ +++|+++|++++++. +++ ..++.++|.++..+|++++|++.+++
T Consensus 2 ~~~a~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGR-YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4456789999999999885 999999999999762 222 45789999999999999999988776
No 187
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.12 E-value=1.4e-05 Score=65.13 Aligned_cols=114 Identities=16% Similarity=0.305 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 029199 65 DSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYE 144 (197)
Q Consensus 65 ~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~ 144 (197)
..+.|.+.|.+|++..+....+|...|.+=+...++.+.|...|+++++..|.++.+|..+...+...+ +.+.|...|+
T Consensus 16 g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~-d~~~aR~lfe 94 (280)
T PF05843_consen 16 GIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLN-DINNARALFE 94 (280)
T ss_dssp HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHH
T ss_pred ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC-cHHHHHHHHH
Confidence 367888999999866666788888888554553456666999999999999999999999999988877 5889999999
Q ss_pred HHHHhCCCCH---HHHHHHHHHHHHcCCccccccCCCc
Q 029199 145 RAVHASPEDS---HVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 145 ~al~~~p~~~---~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
+++..-|... .+|..+...-.+.|+.+......++
T Consensus 95 r~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R 132 (280)
T PF05843_consen 95 RAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR 132 (280)
T ss_dssp HHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9998877655 5777777777777877665444444
No 188
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.12 E-value=8.7e-06 Score=66.25 Aligned_cols=95 Identities=20% Similarity=0.319 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 029199 85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFL 164 (197)
Q Consensus 85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 164 (197)
.+|..+..+..+ .+..+.|+..|++|++..+-...+|...|.+.+..+++.+.|...|+++++..|.++..|..+...+
T Consensus 2 ~v~i~~m~~~~r-~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRR-TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 478888888887 6779999999999997777789999999999888787776799999999999999999999999999
Q ss_pred HHcCCccccccCCCcc
Q 029199 165 WETEEDNDECDAPSEL 180 (197)
Q Consensus 165 ~~~g~~~ea~~~~~~~ 180 (197)
...|+.+.+...|++.
T Consensus 81 ~~~~d~~~aR~lfer~ 96 (280)
T PF05843_consen 81 IKLNDINNARALFERA 96 (280)
T ss_dssp HHTT-HHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHH
Confidence 9999999998888885
No 189
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=5.5e-05 Score=60.29 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccc
Q 029199 100 DLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDND 172 (197)
Q Consensus 100 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 172 (197)
+...|.-.|+..-...|..+..+...+.+...+++ +++|...++.+|..++++|+++.|+..+-..+|+..+
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~-~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR-YEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC-HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence 45555555555555455555555555555555553 5555555555555555555555555555555555544
No 190
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.10 E-value=3.4e-05 Score=66.23 Aligned_cols=116 Identities=17% Similarity=0.112 Sum_probs=92.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----------C----------C----
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADP-----------G----------D---- 118 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P-----------~----------~---- 118 (197)
.+...-++.-++||+++|+.+.+|.-|+.- ...-..+|+++|+++++... . +
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAEE---eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~ 258 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAEE---EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL 258 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhcccc---cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence 678888999999999999999999988731 13456777777777776511 0 1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCccccccCCCccccc
Q 029199 119 GEILSQYAKLVWELHNDQDRAATYYERAVHASPE--DSHVHASYAGFLWETEEDNDECDAPSELDSN 183 (197)
Q Consensus 119 ~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~ea~~~~~~~~~~ 183 (197)
+.+...+|++++++|+ .++|++.++..++..|. +-.++.++..++..++++.++...+.+..++
T Consensus 259 ~y~KrRLAmCarklGr-~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGR-LREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhhHHHHHHHHHHhCC-hHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 3456778999999997 89999999999988775 6679999999999999999998777765443
No 191
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=6.6e-05 Score=59.32 Aligned_cols=100 Identities=21% Similarity=0.242 Sum_probs=83.4
Q ss_pred CcccCCCCCHHHHHHHHHHHHH--------hCCCC----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 029199 57 FYPAGSGGDSQGVEEYYKKMVE--------ENPGN----------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD 118 (197)
Q Consensus 57 ~~~~~~~g~~~~A~~~~~~al~--------~~P~~----------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~ 118 (197)
|..+...|++.+|...|+.|+. ..|.+ ...+.|+..++.. .|++-++++.....|..+|.|
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~-~~e~yevleh~seiL~~~~~n 263 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK-KEEYYEVLEHCSEILRHHPGN 263 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh-HHHHHHHHHHHHHHHhcCCch
Confidence 4456667999999999999864 24544 3457788888887 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 029199 119 GEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHA 158 (197)
Q Consensus 119 ~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 158 (197)
..+++..|.+....=+ .++|..-|.++|+++|.-..+-.
T Consensus 264 vKA~frRakAhaa~Wn-~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 264 VKAYFRRAKAHAAVWN-EAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred HHHHHHHHHHHHhhcC-HHHHHHHHHHHHhcChhhHHHHH
Confidence 9999999999888775 78999999999999998655543
No 192
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.03 E-value=4.1e-05 Score=67.29 Aligned_cols=80 Identities=23% Similarity=0.218 Sum_probs=41.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCC
Q 029199 98 KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAP 177 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~ 177 (197)
.|++++|++++++|+...|..++.+...|.+|-..| ++++|.++++.|..+|+.|-.+-...+..+.+.|+.++|+...
T Consensus 207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G-~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG-DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555555555555555555555555555555544 3555555555555555555555555555555555555554333
Q ss_pred C
Q 029199 178 S 178 (197)
Q Consensus 178 ~ 178 (197)
.
T Consensus 286 ~ 286 (517)
T PF12569_consen 286 S 286 (517)
T ss_pred H
Confidence 3
No 193
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=3e-05 Score=63.44 Aligned_cols=95 Identities=16% Similarity=0.083 Sum_probs=81.6
Q ss_pred CcccCCCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 029199 57 FYPAGSGGDSQGVEEYYKKMVEENPGN----PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWEL 132 (197)
Q Consensus 57 ~~~~~~~g~~~~A~~~~~~al~~~P~~----~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~ 132 (197)
|..++..++|..|+.+|.+.|+....| ...|+|++.+-+. .|+|..|+..+.+++.++|.+.-+++.-+.+++++
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~-l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY-LGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL 166 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH
Confidence 446666789999999999999987655 4467899977777 99999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCC
Q 029199 133 HNDQDRAATYYERAVHASPED 153 (197)
Q Consensus 133 ~~~~~~A~~~~~~al~~~p~~ 153 (197)
.+ +++|..+++..+.++-+.
T Consensus 167 e~-~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 167 ER-FAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HH-HHHHHHHHhhhhhhhHHH
Confidence 97 899999988887776543
No 194
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=4.3e-05 Score=60.87 Aligned_cols=133 Identities=21% Similarity=0.168 Sum_probs=100.4
Q ss_pred chhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCH
Q 029199 5 ALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNP 84 (197)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~ 84 (197)
|+-.+-|+.-|...+-.++..+-+..-..++..|.-..-| +++...|.-+|++.-+.-|-.+
T Consensus 146 I~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~g------------------gek~qdAfyifeE~s~k~~~T~ 207 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATG------------------GEKIQDAFYIFEELSEKTPPTP 207 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhcc------------------chhhhhHHHHHHHHhcccCCCh
Confidence 3445666777777766666554333222244444322222 2678999999999999888889
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 029199 85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHV 156 (197)
Q Consensus 85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~ 156 (197)
...+..+.+... ++++++|...++.+|..+|++|+++.|+-.+-..+|.+.+--.+++.+....+|+++-+
T Consensus 208 ~llnG~Av~~l~-~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 208 LLLNGQAVCHLQ-LGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHccHHHHHHH-hcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 999999977776 99999999999999999999999999999888888887656677788888888988755
No 195
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=5.7e-05 Score=62.19 Aligned_cols=119 Identities=13% Similarity=0.047 Sum_probs=101.6
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHcC
Q 029199 59 PAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA-DPGD---GEILSQYAKLVWELHN 134 (197)
Q Consensus 59 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l-~P~~---~~~~~~lg~~l~~~~~ 134 (197)
..--+|++.+|....++.++-.|.+--++.---..++. +|+...-...+++.+.. +|+- ..+.--++-.+.+.|-
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy-~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFY-NGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHh-ccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 44446899999999999999999999888765556666 89999999999999987 7777 4555566677888884
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 135 DQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 135 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
+++|.+.-+++++++|.+.-+....+.++...|++.|+.+..++
T Consensus 191 -y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 191 -YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred -chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 99999999999999999999999999999999999999776665
No 196
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.00 E-value=9.8e-05 Score=56.19 Aligned_cols=115 Identities=16% Similarity=0.053 Sum_probs=97.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAIL-ADPGDGEILSQYAKLVWELHNDQDRAAT 141 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~-l~P~~~~~~~~lg~~l~~~~~~~~~A~~ 141 (197)
.=|.+.......+.+...|.... .+.||..+.. .|++.+|..+|++++. +.-+++.++..++...+.+++ +..|..
T Consensus 69 ~ldP~R~~Rea~~~~~~ApTvqn-r~rLa~al~e-lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~-~A~a~~ 145 (251)
T COG4700 69 KLDPERHLREATEELAIAPTVQN-RYRLANALAE-LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE-FAAAQQ 145 (251)
T ss_pred hcChhHHHHHHHHHHhhchhHHH-HHHHHHHHHH-hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc-HHHHHH
Confidence 34556666667777777786554 5568988888 9999999999999985 567899999999999999995 999999
Q ss_pred HHHHHHHhCCC--CHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 142 YYERAVHASPE--DSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 142 ~~~~al~~~p~--~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.+++..+.+|. .|+.+.-+|.++..+|++.+|+..|+-.
T Consensus 146 tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a 186 (251)
T COG4700 146 TLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVA 186 (251)
T ss_pred HHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHH
Confidence 99999999875 6788899999999999999998777763
No 197
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.97 E-value=0.0001 Score=66.99 Aligned_cols=135 Identities=13% Similarity=0.060 Sum_probs=99.2
Q ss_pred HHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199 8 EEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFL 87 (197)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 87 (197)
+-++++.|+...++.+++.|+.+....-+++.+.+. |+.++|..+++..-..-++|...+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~--------------------gk~~ea~~~Le~~~~~~~~D~~tL 80 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRL--------------------GKGDEALKLLEALYGLKGTDDLTL 80 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHh--------------------cCchhHHHHHhhhccCCCCchHHH
Confidence 456788888888888889998888888888888874 778888888888777777777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 029199 88 SNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLW 165 (197)
Q Consensus 88 ~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 165 (197)
--+-.++.. ++++++|..+|++++..+|+ ...++.+=++|.+.+. |.+=.+.--+.-+.-|+++...++..-+..
T Consensus 81 q~l~~~y~d-~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~-yk~qQkaa~~LyK~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 81 QFLQNVYRD-LGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKS-YKKQQKAALQLYKNFPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHHHHH-HhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCcccchHHHHHHHHH
Confidence 777756665 89999999999999998988 6666666666666553 554444444444566887765554444443
No 198
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=1.5e-05 Score=64.62 Aligned_cols=116 Identities=12% Similarity=0.071 Sum_probs=97.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
..++..|++++..-.+.+|.+-..+..||.++|. ..++..|.+||++.-.+.|......+..+..+++.+. +.+|+..
T Consensus 23 d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~-~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i-~ADALrV 100 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSPRSRAGLSLLGYCYYR-LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI-YADALRV 100 (459)
T ss_pred HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc-cHHHHHH
Confidence 4788999999999999999999999999999998 9999999999999999999999999999988888776 6677654
Q ss_pred HHHHH------------------------------HhCC--CCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 143 YERAV------------------------------HASP--EDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 143 ~~~al------------------------------~~~p--~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
..... +.-| +......+.|.++.+.|++++|++-|+..
T Consensus 101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence 43221 1224 46677889999999999999998888873
No 199
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.97 E-value=3.3e-05 Score=62.88 Aligned_cols=72 Identities=24% Similarity=0.251 Sum_probs=61.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 029199 91 AQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFL 164 (197)
Q Consensus 91 a~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 164 (197)
+.-.++ .|+.++|...|+.|++++|++|+++..+|.+.-. .++.-+|-.||-+||.++|.|.+++.+.....
T Consensus 123 A~~~~~-~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 123 AGRSRK-DGKLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHh-ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 334455 8999999999999999999999999999987655 45688999999999999999999998887653
No 200
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.91 E-value=1.2e-06 Score=73.59 Aligned_cols=123 Identities=14% Similarity=-0.026 Sum_probs=84.5
Q ss_pred CCCcccCCCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----C--CCHHHH
Q 029199 55 SGFYPAGSGGDSQGVEEYYKKMVEENPGN------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD----P--GDGEIL 122 (197)
Q Consensus 55 ~~~~~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~----P--~~~~~~ 122 (197)
+.+.-+.-.|+++.|+...+.-+.+...+ -.++.|+|+++.. .|+++.|+++|++.+.+- . ..+..-
T Consensus 200 nLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif-lg~fe~A~ehYK~tl~LAielg~r~vEAQsc 278 (639)
T KOG1130|consen 200 NLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF-LGNFELAIEHYKLTLNLAIELGNRTVEAQSC 278 (639)
T ss_pred ccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh-hcccHhHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 33444444588888888877777765443 3467788877776 788888888887766542 2 234456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 123 SQYAKLVWELHNDQDRAATYYERAVHASPE------DSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 123 ~~lg~~l~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
|.+|..|.-.+ ++++|++++.+=|.+.-+ ...+++.+|..+..+|..++|.-....
T Consensus 279 YSLgNtytll~-e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 279 YSLGNTYTLLK-EVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 77787777766 488888888888888732 445678888888888888777655444
No 201
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.89 E-value=4.2e-06 Score=68.58 Aligned_cols=90 Identities=16% Similarity=0.093 Sum_probs=80.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 029199 61 GSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAA 140 (197)
Q Consensus 61 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~ 140 (197)
...|.++.|++.|..++.++|.....|...+.++.+ +++...|+..|..++.++|+...-+-..|.+...++ ++++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk-l~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg-~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLK-LKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG-NWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeee-ccCCchhhhhhhhhhccCcccccccchhhHHHHHhh-chHHHH
Confidence 445899999999999999999999999999988887 999999999999999999999988888888888878 499999
Q ss_pred HHHHHHHHhCCC
Q 029199 141 TYYERAVHASPE 152 (197)
Q Consensus 141 ~~~~~al~~~p~ 152 (197)
..++.+++++-+
T Consensus 203 ~dl~~a~kld~d 214 (377)
T KOG1308|consen 203 HDLALACKLDYD 214 (377)
T ss_pred HHHHHHHhcccc
Confidence 999999998743
No 202
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.88 E-value=0.00011 Score=63.99 Aligned_cols=119 Identities=20% Similarity=0.161 Sum_probs=98.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG----DGEILSQYAKLVWELHNDQDR 138 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~----~~~~~~~lg~~l~~~~~~~~~ 138 (197)
..+.+.|.+.++...+..|+..-.++..|.+... .|+.++|++.|++++..... ....++.+++++.-+. +|++
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~-~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~-~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL-KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH-DWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc-hHHH
Confidence 5678999999999999999999999999988777 99999999999998853332 2346788899988877 5999
Q ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCc-------cccccCCCccccc
Q 029199 139 AATYYERAVHASPE-DSHVHASYAGFLWETEED-------NDECDAPSELDSN 183 (197)
Q Consensus 139 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~-------~ea~~~~~~~~~~ 183 (197)
|.+++.+.++.+.- ..-..|..|.|+..+|+. ++|...|.++|.+
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 99999999987643 444567889999999999 7788888877543
No 203
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.86 E-value=1.2e-05 Score=65.34 Aligned_cols=116 Identities=22% Similarity=0.259 Sum_probs=84.6
Q ss_pred CCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENP--GN----PLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD--PGD----GEILSQYAKLVW 130 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P--~~----~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~--P~~----~~~~~~lg~~l~ 130 (197)
.|++++|..+|.++....- ++ ...+...+.+ +. ..++++|+.+|++|+.+. ..+ ..++.++|.+|.
T Consensus 48 ~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~-~k-~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye 125 (282)
T PF14938_consen 48 AKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANC-YK-KGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYE 125 (282)
T ss_dssp TT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HH-HTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC
T ss_pred HhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HH-hhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 4899999999999976532 22 3345555644 44 459999999999999873 222 357788898888
Q ss_pred HHcCCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 131 ELHNDQDRAATYYERAVHAS--PED----SHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 131 ~~~~~~~~A~~~~~~al~~~--p~~----~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
...+++++|+++|++|+.+. .+. ...+.++|.++.++|++++|.+.|+++
T Consensus 126 ~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~ 181 (282)
T PF14938_consen 126 EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEV 181 (282)
T ss_dssp CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 86136999999999999873 222 245789999999999999999888875
No 204
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.00019 Score=59.54 Aligned_cols=109 Identities=14% Similarity=0.086 Sum_probs=72.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------------HhCC------------
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAI--------------LADP------------ 116 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al--------------~l~P------------ 116 (197)
.|+|++|+..|.-+.+.+.-+.+.|.+|+.+.+. .|++.+|.....++- +++.
T Consensus 70 LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy-Lg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~Lq 148 (557)
T KOG3785|consen 70 LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY-LGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQ 148 (557)
T ss_pred hccHHHHHHHHHHHhccCCCCcccchhHHHHHHH-HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHh
Confidence 4899999999999988888888899999966666 887777765544431 1110
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccc
Q 029199 117 GDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDE 173 (197)
Q Consensus 117 ~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea 173 (197)
+..+-...++.+.+-.. ++++|++.|.+.|.-+|+....-.+++.||.++.=++=+
T Consensus 149 D~~EdqLSLAsvhYmR~-HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvs 204 (557)
T KOG3785|consen 149 DTLEDQLSLASVHYMRM-HYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVS 204 (557)
T ss_pred hhHHHHHhHHHHHHHHH-HHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhH
Confidence 00111122223333323 377888888888888887777777888888887666554
No 205
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.86 E-value=0.00025 Score=59.22 Aligned_cols=56 Identities=11% Similarity=0.000 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcccccccchhhhhhh
Q 029199 138 RAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELDSNTLQIGHAAVA 193 (197)
Q Consensus 138 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~~~~~~~~~~~~~ 193 (197)
+=++..++.++..|++|..++.+|..+.+.+.+.+|...|+..-+.+.+..+.+..
T Consensus 312 ~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~l 367 (400)
T COG3071 312 PLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAEL 367 (400)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHH
Confidence 33555566677789999999999999999999999988888743344444444433
No 206
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.84 E-value=0.00021 Score=65.01 Aligned_cols=108 Identities=14% Similarity=0.062 Sum_probs=98.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
.+++.+|++...+.++..|+.+-+...-|..+.+ +|+.++|..+++..-..-++|...+-.+-.+|..+++ .++|..+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r-~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~-~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFR-LGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK-LDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-hcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh-hhHHHHH
Confidence 3899999999999999999999988877867776 9999999999988888888999999999999999996 8999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCcccc
Q 029199 143 YERAVHASPEDSHVHASYAGFLWETEEDNDE 173 (197)
Q Consensus 143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea 173 (197)
|++++..+|+ .+..+.+=++|.+.+.|.+.
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 88889999999998888774
No 207
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.83 E-value=7.7e-05 Score=62.92 Aligned_cols=172 Identities=15% Similarity=0.073 Sum_probs=105.5
Q ss_pred CcchhHHHHHHHHhhh----cCcccccCCC--ChhhHHhhhcccCCCCCCCCCCCCC---CCCCcccCCCCCHHHHHHHH
Q 029199 3 GTALSEEVKVMEALWN----AGFEQERGTV--GQEMYLAKGLGVGGRGGRGGGTGGG---GSGFYPAGSGGDSQGVEEYY 73 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~----~~~~~~~~p~--~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~A~~~~ 73 (197)
|+.|...|++.+|+.+ ++++.+.... ....++..|-.+-.-|..... -.| +..+... ...++.|.++|
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~-~~pee~g~f~~ev--~~al~~Av~fy 178 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGL-EAPEEKGAFNAEV--TSALENAVKFY 178 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCC-CChhhcccccHHH--HHHHHHHHHHH
Confidence 7888888999888764 3333332221 223344444443332221110 011 2111111 35567788888
Q ss_pred HHHHHhCCC------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCHHHHHH
Q 029199 74 KKMVEENPG------NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG------DGEILSQYAKLVWELHNDQDRAAT 141 (197)
Q Consensus 74 ~~al~~~P~------~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~------~~~~~~~lg~~l~~~~~~~~~A~~ 141 (197)
++-+++-.. ...++-+||+.+|. .|+|++|+..-+.-|.+... .--++.|+|.++..+|+ ++.|++
T Consensus 179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYl-LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~-fe~A~e 256 (639)
T KOG1130|consen 179 MENLELSEKLGDRLAQGRAYGNLGNTYYL-LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN-FELAIE 256 (639)
T ss_pred HHHHHHHHHhhhHHhhcchhcccCceeee-eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc-cHhHHH
Confidence 877765432 47778888888887 88888888877666655322 12467788888888775 888888
Q ss_pred HHHHHHHhC------CCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 142 YYERAVHAS------PEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 142 ~~~~al~~~------p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
+|.+.+.+. .......|.+|..|.-+.++++|++.+++
T Consensus 257 hYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 257 HYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 888776542 22345568888888888888888766655
No 208
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.82 E-value=0.00016 Score=63.42 Aligned_cols=101 Identities=13% Similarity=0.077 Sum_probs=90.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLF-LSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAAT 141 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~-~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~ 141 (197)
.|+...|++|+..|+...|....+ ..+|++++.. .|....|-..+.++|.++...|..++.+|.++..+. +.++|++
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~-~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~-~i~~a~~ 697 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIH-YGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALK-NISGALE 697 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHH-hhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHh-hhHHHHH
Confidence 489999999999999999987654 6689988888 889999999999999999999999999999999988 5999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHH
Q 029199 142 YYERAVHASPEDSHVHASYAGFLW 165 (197)
Q Consensus 142 ~~~~al~~~p~~~~~~~~la~~~~ 165 (197)
+|+.|++++|+++.....+-.+-.
T Consensus 698 ~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 698 AFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999998877665544
No 209
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.80 E-value=0.0001 Score=69.69 Aligned_cols=123 Identities=20% Similarity=0.289 Sum_probs=88.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG--DGEILSQYAKLVWELHNDQDRAA 140 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~--~~~~~~~lg~~l~~~~~~~~~A~ 140 (197)
.+.+++|.++|+..++..-+...+|..++.+++. ..+-++|...+.+||+.-|. +..+....+.+.++.| |.+++.
T Consensus 1543 ~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~-~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G-DaeRGR 1620 (1710)
T KOG1070|consen 1543 SEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR-QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG-DAERGR 1620 (1710)
T ss_pred hhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc-ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC-CchhhH
Confidence 3667777777777777777777777777777776 66667777777777777776 6677777777777755 577777
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcccccccch
Q 029199 141 TYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELDSNTLQI 187 (197)
Q Consensus 141 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~~~~~~~ 187 (197)
..|+..|.-.|...+.|.-+...-.+.|+.+-.++.|+|+-...+.+
T Consensus 1621 tlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1621 TLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 77777777777777777777777777777777777777764444443
No 210
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.80 E-value=4.4e-05 Score=62.13 Aligned_cols=115 Identities=23% Similarity=0.232 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEEN--PGN----PLFLSNYAQFLYQSK-QDLPKAEEYYSRAILADP--GD----GEILSQYAKLVW 130 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~--P~~----~~~~~~la~~l~~~~-g~~~~A~~~~~~al~l~P--~~----~~~~~~lg~~l~ 130 (197)
.++++|+.+|++++.+. -.. ...+.++|.++.. . |++++|+++|++|+.+.- +. ...+.++|.++.
T Consensus 88 ~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~-~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 88 GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE-QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC-TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 69999999999999863 222 4567788966655 6 899999999999998832 22 245678899999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC----H---HHHHHHHHHHHHcCCccccccCCCcc
Q 029199 131 ELHNDQDRAATYYERAVHASPED----S---HVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 131 ~~~~~~~~A~~~~~~al~~~p~~----~---~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.+++ +++|++.|++.....-++ . ..++..+.|+...|+...|.+.+++.
T Consensus 167 ~l~~-y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 167 RLGR-YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HTT--HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HhCC-HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9885 999999999998764221 1 34578888999999998887766663
No 211
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00011 Score=58.07 Aligned_cols=95 Identities=13% Similarity=0.151 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCH----------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 029199 84 PLFLSNYAQFLYQSKQDLPKAEEYYSRAILA--------DPGDG----------EILSQYAKLVWELHNDQDRAATYYER 145 (197)
Q Consensus 84 ~~~~~~la~~l~~~~g~~~~A~~~~~~al~l--------~P~~~----------~~~~~lg~~l~~~~~~~~~A~~~~~~ 145 (197)
..++..-|+-+|. .|++.+|...|+.|+.. .|.+| ..+.|+..|+...+ ++=+++++...
T Consensus 178 v~~l~q~GN~lfk-~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~-e~yevleh~se 255 (329)
T KOG0545|consen 178 VPVLHQEGNRLFK-LGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKE-EYYEVLEHCSE 255 (329)
T ss_pred hHHHHHhhhhhhh-hccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHH-HHHHHHHHHHH
Confidence 3466778888998 99999999999888643 35544 56789999999988 57899999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 146 AVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 146 al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.|+.+|+|..+++.+|......-+.+||..+|+.+
T Consensus 256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~v 290 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKV 290 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 99999999999999999999999999999988874
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.0002 Score=57.21 Aligned_cols=101 Identities=18% Similarity=0.266 Sum_probs=79.5
Q ss_pred CCCCHHHHHHHHHHHHH----hC--CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 029199 62 SGGDSQGVEEYYKKMVE----EN--PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHND 135 (197)
Q Consensus 62 ~~g~~~~A~~~~~~al~----~~--P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~ 135 (197)
+.||.+.|..+|+..-+ ++ ...-.++.+.+.++.. .+++..|...|.+++..||.++.+.+|.+.|+.-+|+
T Consensus 224 Q~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg-~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~- 301 (366)
T KOG2796|consen 224 QIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLG-QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK- 301 (366)
T ss_pred hcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheec-ccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH-
Confidence 35999999999994433 22 3345567777755555 8899999999999999999999999999999999996
Q ss_pred HHHHHHHHHHHHHhCCCCH---HHHHHHHHHH
Q 029199 136 QDRAATYYERAVHASPEDS---HVHASYAGFL 164 (197)
Q Consensus 136 ~~~A~~~~~~al~~~p~~~---~~~~~la~~~ 164 (197)
..+|++.++.++.+.|... .+.+|+..+|
T Consensus 302 l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 302 LKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred HHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 8999999999999999743 3344554443
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.00014 Score=58.05 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=97.8
Q ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hC--CCCHHHHHHHHHHHHHHcCCH
Q 029199 64 GDSQGVEEYYKKMVEEN-PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAIL----AD--PGDGEILSQYAKLVWELHNDQ 136 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~-P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~----l~--P~~~~~~~~lg~~l~~~~~~~ 136 (197)
|+|.-.+..+.+.++.+ |.++.....||.+-.. -|+.+.|..+|++.-+ ++ ..+..+.-+.+.++.-.+ ++
T Consensus 191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ-~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~n-n~ 268 (366)
T KOG2796|consen 191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ-IGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQN-NF 268 (366)
T ss_pred hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheeccc-ch
Confidence 89999999999999999 7778888899988777 9999999999995433 33 345567777777777756 58
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 137 DRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 137 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
..|...|.+++..||.++.+..+.+.|+.-+|+..+|++....+
T Consensus 269 a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~ 312 (366)
T KOG2796|consen 269 AEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAM 312 (366)
T ss_pred HHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998777664
No 214
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.75 E-value=0.00018 Score=67.19 Aligned_cols=116 Identities=15% Similarity=0.111 Sum_probs=89.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----C---CHHHHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGN------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADP-----G---DGEILSQYAKL 128 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P-----~---~~~~~~~lg~~ 128 (197)
.|++++|...+++++...... ..++.++|.+++. .|++++|+..+++++.+-. . ...++..+|.+
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA-QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 599999999999998764321 2355678877777 9999999999999988622 1 23446678888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 129 VWELHNDQDRAATYYERAVHASPE-----DSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 129 l~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
++..| ++++|..++++++..... ....+..++.++...|++++|...+++.
T Consensus 583 ~~~~G-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a 638 (903)
T PRK04841 583 LWEWA-RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRL 638 (903)
T ss_pred HHHhc-CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88887 599999999999886321 3455677899999999999987666554
No 215
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.72 E-value=0.00042 Score=59.48 Aligned_cols=114 Identities=21% Similarity=0.245 Sum_probs=98.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGN----PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDR 138 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~----~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~ 138 (197)
..+.+.+.+.|+.+|++-|+- +.+|..+|.+..+ +-+...|.+.+-.|+-..|.+-...-.+ .+-.+++. ++.
T Consensus 379 ~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIR-q~~l~~ARkiLG~AIG~cPK~KlFk~YI-elElqL~e-fDR 455 (677)
T KOG1915|consen 379 AEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIR-QLNLTGARKILGNAIGKCPKDKLFKGYI-ELELQLRE-FDR 455 (677)
T ss_pred hhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH-HcccHHHHHHHHHHhccCCchhHHHHHH-HHHHHHhh-HHH
Confidence 388999999999999999985 7789999977777 8999999999999999999987665444 35566674 999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 139 AATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 139 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
....|++-|...|+|..+|..+|.+-..+|+.+.+...|.-
T Consensus 456 cRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifel 496 (677)
T KOG1915|consen 456 CRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFEL 496 (677)
T ss_pred HHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999998665554
No 216
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.71 E-value=8.3e-05 Score=40.21 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 029199 86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPG 117 (197)
Q Consensus 86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~ 117 (197)
+|+.+|.++.. +|++++|+.+|+++++++|+
T Consensus 3 ~~~~lg~~y~~-~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQ-LGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHH-TTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCC
Confidence 45555544444 55555555555555555553
No 217
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.001 Score=53.93 Aligned_cols=113 Identities=15% Similarity=0.108 Sum_probs=70.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHHcCCHHH
Q 029199 61 GSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYA--KLVWELHNDQDR 138 (197)
Q Consensus 61 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg--~~l~~~~~~~~~ 138 (197)
...|++.+|...|..++..+|++..+...|+.++.. .|+.+.|...+...=....++. .....+ .++.+... ..+
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~-~g~~e~A~~iL~~lP~~~~~~~-~~~l~a~i~ll~qaa~-~~~ 221 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLA-AGDVEAAQAILAALPLQAQDKA-AHGLQAQIELLEQAAA-TPE 221 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH-cCChHHHHHHHHhCcccchhhH-HHHHHHHHHHHHHHhc-CCC
Confidence 445999999999999999999999999999988888 9999887666654221111111 111111 12222221 211
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCC
Q 029199 139 AATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAP 177 (197)
Q Consensus 139 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~ 177 (197)
...+++.+..+|+|.++-+.++..+...|+.++|.+.+
T Consensus 222 -~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~L 259 (304)
T COG3118 222 -IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHL 259 (304)
T ss_pred -HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 23355556666666666666666666666666664433
No 218
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.71 E-value=3e-05 Score=66.15 Aligned_cols=100 Identities=11% Similarity=-0.048 Sum_probs=90.2
Q ss_pred HHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199 8 EEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFL 87 (197)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 87 (197)
....+..|+..++++++.+|+++..+-.+.+..-.. +++..|+..+.++++++|....++
T Consensus 16 ~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~--------------------e~~~~Al~Da~kaie~dP~~~K~Y 75 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKV--------------------ESFGGALHDALKAIELDPTYIKAY 75 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCcceeeechhhhhheee--------------------chhhhHHHHHHhhhhcCchhhhee
Confidence 345678899999999999999999999998877764 889999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 88 SNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKL 128 (197)
Q Consensus 88 ~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~ 128 (197)
+..|..... .+++.+|...|++...+.|+++.+.-.+-.+
T Consensus 76 ~rrg~a~m~-l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 76 VRRGTAVMA-LGEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred eeccHHHHh-HHHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 999977777 9999999999999999999999998776655
No 219
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.70 E-value=9e-05 Score=63.62 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=82.3
Q ss_pred CCCHHHHHHHHHHH-HHhCCC------C--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---------C---------
Q 029199 63 GGDSQGVEEYYKKM-VEENPG------N--PLFLSNYAQFLYQSKQDLPKAEEYYSRAILA---------D--------- 115 (197)
Q Consensus 63 ~g~~~~A~~~~~~a-l~~~P~------~--~~~~~~la~~l~~~~g~~~~A~~~~~~al~l---------~--------- 115 (197)
.|++.+|.+.+... +...|. . -.+|+|+|.+.+. .+.+.-+..+|.+||+. .
T Consensus 253 ~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~-~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~ 331 (696)
T KOG2471|consen 253 HGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ-LGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQ 331 (696)
T ss_pred hcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeee-hhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhc
Confidence 48999998887543 333333 2 3368899966666 99999999999999961 1
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199 116 PGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWE 166 (197)
Q Consensus 116 P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 166 (197)
.+.-+++||.|..|...|+ .-.|.+||.+++...-.||..|.+++.|.+.
T Consensus 332 nks~eilYNcG~~~Lh~gr-Pl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 332 NKSMEILYNCGLLYLHSGR-PLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred ccchhhHHhhhHHHHhcCC-cHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 2456889999999999997 8899999999999999999999999988654
No 220
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.59 E-value=0.0021 Score=46.79 Aligned_cols=61 Identities=25% Similarity=0.247 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199 86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVH 148 (197)
Q Consensus 86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~ 148 (197)
++..++..+.. .|++++|+..+++++..+|.+..++..+-.+|...|+ ..+|+..|++..+
T Consensus 64 ~~~~l~~~~~~-~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~-~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLE-AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGR-RAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcC-HHHHHHHHHHHHH
Confidence 44455555555 7777777777777777777777777777777777774 7777777776643
No 221
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.56 E-value=0.00016 Score=59.02 Aligned_cols=67 Identities=22% Similarity=0.415 Sum_probs=60.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 61 GSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKL 128 (197)
Q Consensus 61 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~ 128 (197)
...|+.++|...|+.|+.++|++++++..+|.+.-. .++.-+|-++|-+||.++|.|.+++.|....
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 345999999999999999999999999999966555 7889999999999999999999999998753
No 222
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.55 E-value=0.00017 Score=38.91 Aligned_cols=33 Identities=27% Similarity=0.508 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 029199 120 EILSQYAKLVWELHNDQDRAATYYERAVHASPED 153 (197)
Q Consensus 120 ~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~ 153 (197)
.+++.+|.++..+| ++++|.++|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~-~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLG-DYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCC
Confidence 57899999999988 5999999999999999964
No 223
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.55 E-value=0.00099 Score=62.28 Aligned_cols=118 Identities=16% Similarity=0.067 Sum_probs=90.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHH
Q 029199 61 GSGGDSQGVEEYYKKMVEENPGNP-----LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG--D----GEILSQYAKLV 129 (197)
Q Consensus 61 ~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~--~----~~~~~~lg~~l 129 (197)
...|++++|...+++++...|... .++..+|.++.. .|++++|+..+++++..... + ..++.++|.++
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~-~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC-KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 346999999999999998655432 345678867666 99999999999999976332 1 24567788888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 130 WELHNDQDRAATYYERAVHASPE--------DSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 130 ~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+..| ++++|..++++++++... ....+..+|.++...|++++|...+++.
T Consensus 542 ~~~G-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a 599 (903)
T PRK04841 542 FAQG-FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKG 599 (903)
T ss_pred HHCC-CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 8877 599999999999986321 2334667899999999999997666553
No 224
>PRK10941 hypothetical protein; Provisional
Probab=97.53 E-value=0.0017 Score=52.56 Aligned_cols=76 Identities=17% Similarity=0.132 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGF 163 (197)
Q Consensus 86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 163 (197)
...++-.++.. .+++++|+.+.++.+.++|++|.-+...|.+|.+++. +..|..-++.-++..|++|.+-.-...+
T Consensus 183 ml~nLK~~~~~-~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c-~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 183 LLDTLKAALME-EKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDC-EHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHH-cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 34566656666 8999999999999999999999999999999999996 8999999999999999999886554444
No 225
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.52 E-value=2.1e-05 Score=64.62 Aligned_cols=114 Identities=11% Similarity=0.050 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029199 67 QGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERA 146 (197)
Q Consensus 67 ~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~a 146 (197)
+...+-++++-+..-. +.-.+. .|.+++|++.|.+++.++|....++...+.++.++++ ...|+.-|..+
T Consensus 105 e~Tee~~eqa~e~k~~--------A~eAln-~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~k-p~~airD~d~A 174 (377)
T KOG1308|consen 105 EITEEMMDQANDKKVQ--------ASEALN-DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKK-PNAAIRDCDFA 174 (377)
T ss_pred hhhHHHHHHHHHHHHH--------HHHHhc-CcchhhhhcccccccccCCchhhhcccccceeeeccC-Cchhhhhhhhh
Confidence 4455666666544322 223344 7999999999999999999999999999999999997 78999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCccccccCCCcccccccchhhh
Q 029199 147 VHASPEDSHVHASYAGFLWETEEDNDECDAPSELDSNTLQIGHA 190 (197)
Q Consensus 147 l~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~~~~~~~~~~ 190 (197)
+.++|+...-+-..+.....+|++.++..+++..-.+...+.-+
T Consensus 175 ~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 175 IEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEANS 218 (377)
T ss_pred hccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccHHHH
Confidence 99999999999999999999999999988887755555444333
No 226
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.51 E-value=0.00019 Score=58.50 Aligned_cols=89 Identities=8% Similarity=0.173 Sum_probs=73.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 029199 72 YYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASP 151 (197)
Q Consensus 72 ~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p 151 (197)
.|.++....|+|+..|..++..... .+.+.+--..|.++++.+|.|.+.|..-+..-+....+++.+...|.++|+.+|
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k-~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~ 173 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIK-KKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS 173 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence 3456667789999999999955555 889999999999999999999999988554444444469999999999999999
Q ss_pred CCHHHHHHHH
Q 029199 152 EDSHVHASYA 161 (197)
Q Consensus 152 ~~~~~~~~la 161 (197)
++|.+|..+-
T Consensus 174 ~~p~iw~eyf 183 (435)
T COG5191 174 RSPRIWIEYF 183 (435)
T ss_pred CCchHHHHHH
Confidence 9999986544
No 227
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0045 Score=54.37 Aligned_cols=128 Identities=20% Similarity=0.121 Sum_probs=98.3
Q ss_pred HhhhcCcccccCCCChhhHHhh--hcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199 15 ALWNAGFEQERGTVGQEMYLAK--GLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQ 92 (197)
Q Consensus 15 a~~~~~~~~~~~p~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~ 92 (197)
++..+-..+..+|.+++++++. .+.... .++...+.-.+..++..+|++..++.+|+.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~--------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ 109 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAP--------------------LADSTLAFLAKRIPLSVNPENCPAVQNLAA 109 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccc--------------------cccchhHHHHHhhhHhcCcccchHHHHHHH
Confidence 4444555556678888887776 333333 377778999999999999999999999997
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 93 FLYQSKQDLPKAEEYYSRAILADPGDGEILSQY------AKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGF 163 (197)
Q Consensus 93 ~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~l------g~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 163 (197)
.+......+.-+....+.+....|+|..+...+ +..+..+++ ..++...+++++.+.|.++.+...+...
T Consensus 110 ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 110 ALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGR-TAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 777633444555555566999999999998888 877788886 8999999999999999997776555544
No 228
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.40 E-value=0.0013 Score=56.67 Aligned_cols=114 Identities=17% Similarity=0.232 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYY 143 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~ 143 (197)
+++..|...+++||..+-.+...|..++.+=.+ ....+-|...+++|+.+-|.--..|+.+-.+--.+|+ ..-|.+.|
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emk-nk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgN-i~gaRqif 164 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMK-NKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGN-IAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHh-hhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc-cHHHHHHH
Confidence 667777777777777777777777777766555 6677777777777777777777777777766666664 67777777
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 144 ERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 144 ~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
++=+...|+ ..+|......-.+.++.+.|...|+++
T Consensus 165 erW~~w~P~-eqaW~sfI~fElRykeieraR~IYerf 200 (677)
T KOG1915|consen 165 ERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERF 200 (677)
T ss_pred HHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 777777775 667777777777777777777777664
No 229
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0023 Score=51.17 Aligned_cols=118 Identities=18% Similarity=0.168 Sum_probs=100.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH-HH
Q 029199 61 GSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQD-RA 139 (197)
Q Consensus 61 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~-~A 139 (197)
.+...-+.|++..+.++.++|-+-.+|.-+-.++.....+..+-++++...+.-+|+|-.+|...-.+.-.++ +.. .-
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~-d~s~rE 132 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLG-DPSFRE 132 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhc-Ccccch
Confidence 3345667899999999999999999998777677775678999999999999999999999999988877777 676 78
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 140 ATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 140 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
++..+.++..+..|..+|..+-++...-+.++.......+
T Consensus 133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~ 172 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADE 172 (318)
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 8999999999999999999999999998888876544333
No 230
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.38 E-value=0.0086 Score=50.54 Aligned_cols=155 Identities=14% Similarity=0.103 Sum_probs=94.4
Q ss_pred hhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHH-HHHhCCCCH
Q 029199 6 LSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKK-MVEENPGNP 84 (197)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~-al~~~P~~~ 84 (197)
|+.+++.-|.+..+.-.. -+..+.+.+..++++.+... .|+.++|++.+.. .....+.++
T Consensus 157 ydamI~Lve~l~~~p~~~--~~~~~~i~~~yafALnRrn~-----------------~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 157 YDAMIKLVETLEALPTCD--VANQHNIKFQYAFALNRRNK-----------------PGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred HHHHHHHHHHhhccCccc--hhcchHHHHHHHHHHhhccc-----------------CCCHHHHHHHHHHHHhccCCCCh
Confidence 566777777777764433 45566777777777766322 4888999999888 556677788
Q ss_pred HHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------h
Q 029199 85 LFLSNYAQFLYQS--------KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVH-------A 149 (197)
Q Consensus 85 ~~~~~la~~l~~~--------~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~-------~ 149 (197)
+.+..+|.++... ....++|+..|+++.+++|+. ..=.|++.++...|.+++...+.-.-.++ .
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k 296 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK 296 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence 8888888665431 114678899999999988643 44456666666656543332221111111 1
Q ss_pred C----CCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 150 S----PEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 150 ~----p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
. -.+.-.+-.+..+..-.|+++++.+..+++
T Consensus 297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~ 331 (374)
T PF13281_consen 297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKA 331 (374)
T ss_pred ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 112222345555566677777776666654
No 231
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.27 E-value=0.012 Score=48.92 Aligned_cols=95 Identities=17% Similarity=0.224 Sum_probs=78.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 029199 70 EEYYKKMVEENPGNPLFLSNYAQFLYQSKQD------------LPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQD 137 (197)
Q Consensus 70 ~~~~~~al~~~P~~~~~~~~la~~l~~~~g~------------~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~ 137 (197)
...|++.++.+|+|..+|..+..+--. .-. .+.-+..|++||+.+|++...+..+-....+.- +.+
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~-~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~-~~~ 82 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDE-LFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW-DSE 82 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHH-hccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHH
Confidence 356889999999999999999854443 221 356688999999999999999999888888877 578
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199 138 RAATYYERAVHASPEDSHVHASYAGFLWE 166 (197)
Q Consensus 138 ~A~~~~~~al~~~p~~~~~~~~la~~~~~ 166 (197)
+..+-+++++..+|+++.+|..+-.....
T Consensus 83 ~l~~~we~~l~~~~~~~~LW~~yL~~~q~ 111 (321)
T PF08424_consen 83 KLAKKWEELLFKNPGSPELWREYLDFRQS 111 (321)
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 88999999999999999999877665544
No 232
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.27 E-value=0.012 Score=46.85 Aligned_cols=116 Identities=14% Similarity=0.118 Sum_probs=88.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHc---
Q 029199 63 GGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGE---ILSQYAKLVWELH--- 133 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~---~~~~lg~~l~~~~--- 133 (197)
.|++++|++.|+.+....|.. ..+...++...++ .+++++|+...++-+++.|.++. +.+..|..++..-
T Consensus 47 ~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~ 125 (254)
T COG4105 47 KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDV 125 (254)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcc
Confidence 599999999999999999887 4578888988888 99999999999999999998775 4555666554311
Q ss_pred -CC---HHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCccccccCCCc
Q 029199 134 -ND---QDRAATYYERAVHASPEDSHVH-----------------ASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 134 -~~---~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~ea~~~~~~ 179 (197)
+| ..+|...|+..++.-|+..-+- ...|..|.+-|.+..|..=+++
T Consensus 126 ~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 126 TRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred ccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 12 4578888999999999865321 3566778888887777544444
No 233
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.26 E-value=0.0029 Score=46.00 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 121 ILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 121 ~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+...++..+...| ++++|+..+++++..+|.+..+|..+-.++..+|+..+|.+.|+++
T Consensus 64 ~~~~l~~~~~~~~-~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 64 ALERLAEALLEAG-DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3445566667767 5999999999999999999999999999999999999999988886
No 234
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0018 Score=53.34 Aligned_cols=93 Identities=16% Similarity=0.081 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199 85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG----EILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASY 160 (197)
Q Consensus 85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~----~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 160 (197)
.-+..=|+.+++ ..+|..|+.+|.+.|+..-.|+ ..+.|++-+.+.+|+ |-.|+.-+.+++.++|.+..+++.-
T Consensus 82 en~KeeGN~~fK-~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~N-yRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 82 ENYKEEGNEYFK-EKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGN-YRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHhHHHHH-hhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHhcCcchhhhhhhh
Confidence 345556889998 8999999999999998865444 567889989888896 8999999999999999999999999
Q ss_pred HHHHHHcCCccccccCCCc
Q 029199 161 AGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 161 a~~~~~~g~~~ea~~~~~~ 179 (197)
+.|+.++.++++|..+-+.
T Consensus 160 Akc~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEE 178 (390)
T ss_pred hHHHHHHHHHHHHHHHHhh
Confidence 9999999998887655544
No 235
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.0032 Score=52.51 Aligned_cols=85 Identities=16% Similarity=0.068 Sum_probs=68.7
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 029199 60 AGSGGDSQGVEEYYKKMVEENPGNP-LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDR 138 (197)
Q Consensus 60 ~~~~g~~~~A~~~~~~al~~~P~~~-~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~ 138 (197)
+.+..|+..|+..++-.+..+.... ..-.-+|.+++. .|++++|+..|+-+...+.-+.+++.+++.+.+-+|. +.+
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fh-LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~-Y~e 109 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFH-LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ-YIE 109 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHh-hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH-HHH
Confidence 4456899999999998887664433 222224767777 9999999999999999888889999999999999996 899
Q ss_pred HHHHHHHH
Q 029199 139 AATYYERA 146 (197)
Q Consensus 139 A~~~~~~a 146 (197)
|.....++
T Consensus 110 A~~~~~ka 117 (557)
T KOG3785|consen 110 AKSIAEKA 117 (557)
T ss_pred HHHHHhhC
Confidence 98877765
No 236
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.22 E-value=0.00084 Score=35.68 Aligned_cols=30 Identities=33% Similarity=0.479 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 029199 87 LSNYAQFLYQSKQDLPKAEEYYSRAILADPG 117 (197)
Q Consensus 87 ~~~la~~l~~~~g~~~~A~~~~~~al~l~P~ 117 (197)
++++|.++.. .|++++|+..|+++++..|+
T Consensus 3 ~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYK-LGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHH-HCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHH-ccCHHHHHHHHHHHHHHCcC
Confidence 3444444443 44455555555554444443
No 237
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.20 E-value=0.0012 Score=44.49 Aligned_cols=48 Identities=15% Similarity=0.041 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 029199 70 EEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD 118 (197)
Q Consensus 70 ~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~ 118 (197)
+..+++.+..+|+|..+.+.+|..+.. .|++++|++.+-.+++.+|+.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~-~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLA-AGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCccc
Confidence 455666666677776666666655555 667777777666666666554
No 238
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0072 Score=51.06 Aligned_cols=102 Identities=10% Similarity=0.035 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC---HHHH
Q 029199 65 DSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQ--DLPKAEEYYSRAILADPGDGEILSQYAKLVWELHND---QDRA 139 (197)
Q Consensus 65 ~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g--~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~---~~~A 139 (197)
-.++-+.+.+.+++.+|+.-.+|+.+-.++.+ .+ ++..-++..+++++.||.|...|...-.+.....+. ..+-
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~-~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~E 168 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQK-NPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEE 168 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhH
Confidence 56777899999999999999999999977775 43 479999999999999999999998887777666665 5678
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 029199 140 ATYYERAVHASPEDSHVHASYAGFLWET 167 (197)
Q Consensus 140 ~~~~~~al~~~p~~~~~~~~la~~~~~~ 167 (197)
+++..+++.-+++|..+|.++..++..+
T Consensus 169 l~ftt~~I~~nfSNYsaWhyRs~lL~~l 196 (421)
T KOG0529|consen 169 LEFTTKLINDNFSNYSAWHYRSLLLSTL 196 (421)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence 8999999999999999999999998865
No 239
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.18 E-value=0.00086 Score=36.96 Aligned_cols=25 Identities=40% Similarity=0.618 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 029199 87 LSNYAQFLYQSKQDLPKAEEYYSRAI 112 (197)
Q Consensus 87 ~~~la~~l~~~~g~~~~A~~~~~~al 112 (197)
|.+||.++.. .|++++|+++|+++|
T Consensus 2 l~~Lg~~~~~-~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQ-QGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHH-CT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 4455544444 566666666666533
No 240
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.16 E-value=0.0044 Score=59.21 Aligned_cols=141 Identities=13% Similarity=0.109 Sum_probs=119.9
Q ss_pred chhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC--
Q 029199 5 ALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG-- 82 (197)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-- 82 (197)
+|..-.++.+|.+.|+.+.++......+|...|-.+-. ..+-+.|...+++|++.-|.
T Consensus 1539 iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~--------------------~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR--------------------QNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc--------------------ccHHHHHHHHHHHHHhhcchhh
Confidence 46677788899999999999988889999988877766 36668899999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS--PEDSHVHASY 160 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 160 (197)
+..+....+.+-|+ .|+.+.++..|+-.+.-+|.-.++|.-|...-...+ +.+.....|+|++.+. |.....+|+.
T Consensus 1599 Hv~~IskfAqLEFk-~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~-~~~~vR~lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFK-YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHG-DIKYVRDLFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred hHHHHHHHHHHHhh-cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccC-CHHHHHHHHHHHHhcCCChhHhHHHHHH
Confidence 88888889977787 999999999999999999999999999999988877 4799999999999876 5555666665
Q ss_pred HHHHHHc
Q 029199 161 AGFLWET 167 (197)
Q Consensus 161 a~~~~~~ 167 (197)
=.-|.+.
T Consensus 1677 wLeyEk~ 1683 (1710)
T KOG1070|consen 1677 WLEYEKS 1683 (1710)
T ss_pred HHHHHHh
Confidence 5555554
No 241
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.16 E-value=0.00087 Score=52.56 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGE 120 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~ 120 (197)
.++.+.|.+.|.+++.+.|++...|+.+| .+..+.|+++.|.+.|++.++++|.+..
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g-~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLG-EYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcc-hhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 58999999999999999999999999999 6666699999999999999999998754
No 242
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.10 E-value=0.004 Score=37.58 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199 87 LSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYA 126 (197)
Q Consensus 87 ~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg 126 (197)
++.+|..+++ .|++++|..+.+.+|+.+|+|..+.....
T Consensus 4 lY~lAig~yk-l~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 4 LYYLAIGHYK-LGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 3445544555 66666666666666666666666654443
No 243
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.05 E-value=0.0018 Score=34.37 Aligned_cols=33 Identities=27% Similarity=0.562 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 029199 120 EILSQYAKLVWELHNDQDRAATYYERAVHASPED 153 (197)
Q Consensus 120 ~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~ 153 (197)
++++++|.++...| ++++|++.|++.++..|++
T Consensus 1 ~a~~~~a~~~~~~g-~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLG-DYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHC-HHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHcc-CHHHHHHHHHHHHHHCcCC
Confidence 47899999999987 5999999999999999974
No 244
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.04 E-value=0.0012 Score=33.72 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 029199 121 ILSQYAKLVWELHNDQDRAATYYERAVHASP 151 (197)
Q Consensus 121 ~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p 151 (197)
+++++|.++...++ +++|..+|+++++++|
T Consensus 3 ~~~~~a~~~~~~~~-~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGD-YDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhh-HHHHHHHHHHHHccCC
Confidence 34444555444443 4555555555554444
No 245
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.97 E-value=0.0018 Score=33.08 Aligned_cols=33 Identities=30% Similarity=0.416 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 029199 85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD 118 (197)
Q Consensus 85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~ 118 (197)
.+|+++|.++.. .+++++|+.+|+++++++|++
T Consensus 2 ~~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLK-LGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHH-HhhHHHHHHHHHHHHccCCCC
Confidence 468889988777 999999999999999998864
No 246
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.003 Score=52.32 Aligned_cols=122 Identities=16% Similarity=0.029 Sum_probs=95.0
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199 56 GFYPAGSGGDSQGVEEYYKKMVEE-NPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWE 131 (197)
Q Consensus 56 ~~~~~~~~g~~~~A~~~~~~al~~-~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~ 131 (197)
.--.+.+.|+...-...+++.+-. +|+- +-++-.++-.+.. .|-+++|++.-++++++||.+..+....+-++.-
T Consensus 143 sh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E-~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem 221 (491)
T KOG2610|consen 143 SHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE-CGIYDDAEKQADRALQINRFDCWASHAKAHVLEM 221 (491)
T ss_pred hhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH-hccchhHHHHHHhhccCCCcchHHHHHHHHHHHh
Confidence 334556679999899999999887 6666 5555566644455 8999999999999999999999999999999887
Q ss_pred HcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 132 LHNDQDRAATYYERAVHASPE----DSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 132 ~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
.++ ++++.+...+--..-.. -..-|...+.++.+.++++.++..|.+
T Consensus 222 ~~r-~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 222 NGR-HKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred cch-hhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 776 89999988775332111 123367788999999999999888876
No 247
>PRK10941 hypothetical protein; Provisional
Probab=96.91 E-value=0.0052 Score=49.76 Aligned_cols=68 Identities=12% Similarity=-0.050 Sum_probs=60.5
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199 59 PAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAK 127 (197)
Q Consensus 59 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~ 127 (197)
.+...++++.|+++.+..+.++|+++.-+..+|.++.. +|.+..|...++.-++..|++|.+..-...
T Consensus 190 ~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q-L~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 190 ALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQ-LDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 44567999999999999999999999999999966665 999999999999999999999998765543
No 248
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.90 E-value=0.046 Score=44.28 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--
Q 029199 64 GDSQGVEEYYKKMVEENPGN-PLFLSNYAQFLYQSKQ--------DLPKAEEYYSRAILADPGDGEILSQYAKLVWEL-- 132 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~-~~~~~~la~~l~~~~g--------~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~-- 132 (197)
.+..+|.++|+++.+..-.. ..+.+.++.++.. | +..+|+..|.++-... ++.+.+++|.+|..-
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~--g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLS--GLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc--ChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCC
Confidence 48899999999999886444 3447777854443 4 3447999999988776 888999999877652
Q ss_pred -cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 029199 133 -HNDQDRAATYYERAVHASPEDSHVHASYAGFLWETE 168 (197)
Q Consensus 133 -~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 168 (197)
.+++++|..+|.++-+... ...+++++ ++...|
T Consensus 203 v~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 2368899999999988776 88999999 777666
No 249
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.88 E-value=0.0058 Score=53.36 Aligned_cols=119 Identities=14% Similarity=0.048 Sum_probs=92.0
Q ss_pred HHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHH---
Q 029199 9 EVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPL--- 85 (197)
Q Consensus 9 ~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~--- 85 (197)
.+.+..+...+....++.|+++-..+..|-.... .|+.++|++.|++++........
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~--------------------~g~~~~Ai~~~~~a~~~q~~~~Ql~~ 305 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL--------------------KGNLEEAIESFERAIESQSEWKQLHH 305 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--------------------hcCHHHHHHHHHHhccchhhHHhHHH
Confidence 4556777778888888999999888888877665 49999999999999864444333
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHh
Q 029199 86 -FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG-EILSQYAKLVWELHNDQ-------DRAATYYERAVHA 149 (197)
Q Consensus 86 -~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~-~~~~~lg~~l~~~~~~~-------~~A~~~~~~al~~ 149 (197)
.++.++.++.. +.++++|..+|.+.++.+.-+. ...|..|.++...++ . ++|.++|.++-..
T Consensus 306 l~~~El~w~~~~-~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~-~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 306 LCYFELAWCHMF-QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGR-EEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHHH-HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc-chhhhhhHHHHHHHHHHHHHH
Confidence 46678866666 8999999999999999766543 455666778888775 6 7888888887554
No 250
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.88 E-value=0.013 Score=46.69 Aligned_cols=83 Identities=16% Similarity=0.062 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---H
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG---EILSQYAKLVWELHNDQDRAATYYERAVHASPEDSH---V 156 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~---~ 156 (197)
.+..|++-|..... .|++++|+..|+++...+|.++ .+...++.++++.+ ++++|+..+++-+++.|+++. +
T Consensus 33 p~~~LY~~g~~~L~-~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~-~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 33 PASELYNEGLTELQ-KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNG-EYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCCCCCChhHH
Confidence 45567777766666 8999999999999999998766 67888999999977 599999999999999988775 4
Q ss_pred HHHHHHHHHHc
Q 029199 157 HASYAGFLWET 167 (197)
Q Consensus 157 ~~~la~~~~~~ 167 (197)
++-.|.++...
T Consensus 111 ~YlkgLs~~~~ 121 (254)
T COG4105 111 YYLKGLSYFFQ 121 (254)
T ss_pred HHHHHHHHhcc
Confidence 66667665443
No 251
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.87 E-value=0.034 Score=37.35 Aligned_cols=71 Identities=11% Similarity=0.026 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCcccccc
Q 029199 104 AEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED--SHVHASYAGFLWETEEDNDECD 175 (197)
Q Consensus 104 A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~ea~~ 175 (197)
.+..+++.++.+|+|+.+.+.+|..+...| ++++|++.+-.+++.+|+. ..+.-.+-.++..+|..+.-..
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g-~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~ 79 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAG-DYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVS 79 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHH
Confidence 467789999999999999999999999977 5999999999999998765 7788888888888888665433
No 252
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.87 E-value=0.0092 Score=35.98 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 029199 120 EILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLW 165 (197)
Q Consensus 120 ~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 165 (197)
+.++.++..++++| ++++|..+.+.+|+++|+|..+..-...+-.
T Consensus 2 d~lY~lAig~ykl~-~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~ 46 (53)
T PF14853_consen 2 DCLYYLAIGHYKLG-EYEKARRYCDALLEIEPDNRQAQSLKELIED 46 (53)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhh-hHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 45788899999988 5999999999999999999998766555443
No 253
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.85 E-value=0.038 Score=41.08 Aligned_cols=100 Identities=16% Similarity=0.105 Sum_probs=79.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
.++.+.+...+...--+.|+.+.+-..-|.++.. .|++.+|+..++.+....|..|.+.-.++.||+.++ |. .=..+
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~-r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~-D~-~Wr~~ 99 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV-RGDWDDALRLLRELEERAPGFPYAKALLALCLYALG-DP-SWRRY 99 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC-Ch-HHHHH
Confidence 4788999999999999999999999988866665 999999999999999999999999999999998866 53 44555
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHH
Q 029199 143 YERAVHASPEDSHVHASYAGFLWE 166 (197)
Q Consensus 143 ~~~al~~~p~~~~~~~~la~~~~~ 166 (197)
-..+++..+ ++.+..-...++..
T Consensus 100 A~evle~~~-d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 100 ADEVLESGA-DPDARALVRALLAR 122 (160)
T ss_pred HHHHHhcCC-ChHHHHHHHHHHHh
Confidence 566666555 56665444444433
No 254
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.83 E-value=0.0021 Score=35.36 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 029199 121 ILSQYAKLVWELHNDQDRAATYYERAVHAS 150 (197)
Q Consensus 121 ~~~~lg~~l~~~~~~~~~A~~~~~~al~~~ 150 (197)
++.++|.++...| ++++|+++|+++|.+.
T Consensus 1 al~~Lg~~~~~~g-~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQG-DYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT--HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC-CHHHHHHHHHHHHHhc
Confidence 4789999999988 5999999999966543
No 255
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.82 E-value=0.0045 Score=51.75 Aligned_cols=116 Identities=14% Similarity=0.018 Sum_probs=90.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----------CHHHHHH
Q 029199 61 GSGGDSQGVEEYYKKMVEENPGNP------LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG----------DGEILSQ 124 (197)
Q Consensus 61 ~~~g~~~~A~~~~~~al~~~P~~~------~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~----------~~~~~~~ 124 (197)
...+.+++++++|++|+++..++. .+...||.++-. ..++++|.-...+|+++-.. ...+++.
T Consensus 133 lgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~-l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyh 211 (518)
T KOG1941|consen 133 LGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ-LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYH 211 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH-HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHH
Confidence 445889999999999999865543 367788966555 99999999999999887432 1256778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCccccccCCC
Q 029199 125 YAKLVWELHNDQDRAATYYERAVHAS------PEDSHVHASYAGFLWETEEDNDECDAPS 178 (197)
Q Consensus 125 lg~~l~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~ea~~~~~ 178 (197)
+++.|..+|+ ...|.++.+.+.++. |-......-+|.+|...|+.+.+-.-|+
T Consensus 212 maValR~~G~-LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 212 MAVALRLLGR-LGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 8888888886 899999999998764 3455667889999999999988644443
No 256
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.81 E-value=0.0076 Score=50.04 Aligned_cols=157 Identities=13% Similarity=0.060 Sum_probs=107.7
Q ss_pred HhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 029199 15 ALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFL 94 (197)
Q Consensus 15 a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l 94 (197)
...+|+.....+|.|.+.|+.-----+..-..... ..-....-.+.-+..|++||+.+|++...+..+-.+.
T Consensus 4 r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~--------~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~ 75 (321)
T PF08424_consen 4 RTAELNRRVRENPHDIEAWLELIEFQDELFRLQSS--------SKAERRALAERKLSILERALKHNPDSERLLLGYLEEG 75 (321)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcccccc--------chhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44566667778999999988743222221100000 0001113356778999999999999999998877666
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHhCC----C--------------CH
Q 029199 95 YQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWEL-HN-DQDRAATYYERAVHASP----E--------------DS 154 (197)
Q Consensus 95 ~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~-~~-~~~~A~~~~~~al~~~p----~--------------~~ 154 (197)
.+ ..+.++-.+-+++++..+|+++.+|..+-...... .+ .+++....|.++|+.-. . -.
T Consensus 76 ~~-~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l 154 (321)
T PF08424_consen 76 EK-VWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFML 154 (321)
T ss_pred HH-hCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHH
Confidence 66 77889999999999999999999998886544331 11 25677777777765421 1 11
Q ss_pred HHHHHHHHHHHHcCCccccccCCCcc
Q 029199 155 HVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 155 ~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.++.++...+.+.|-.+.|...+|.+
T Consensus 155 ~v~~r~~~fl~~aG~~E~Ava~~Qa~ 180 (321)
T PF08424_consen 155 YVFLRLCRFLRQAGYTERAVALWQAL 180 (321)
T ss_pred HHHHHHHHHHHHCCchHHHHHHHHHH
Confidence 35678888899999999998777774
No 257
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.76 E-value=0.0076 Score=52.61 Aligned_cols=92 Identities=20% Similarity=0.098 Sum_probs=78.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 029199 62 SGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSK--QDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRA 139 (197)
Q Consensus 62 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~--g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A 139 (197)
+.+....++..|.++++.-|+....+-+++.++.++. |+.-.|+.....|+++||....+|+.++.++.++++ +.+|
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r-~~ea 464 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR-YLEA 464 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh-HHHh
Confidence 3467788999999999999999999999987776532 577789999999999999999999999999999997 8999
Q ss_pred HHHHHHHHHhCCCCH
Q 029199 140 ATYYERAVHASPEDS 154 (197)
Q Consensus 140 ~~~~~~al~~~p~~~ 154 (197)
+++...+....|.+.
T Consensus 465 l~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 465 LSCHWALQMSFPTDV 479 (758)
T ss_pred hhhHHHHhhcCchhh
Confidence 998877777777544
No 258
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.012 Score=47.79 Aligned_cols=78 Identities=14% Similarity=0.127 Sum_probs=56.6
Q ss_pred CCHHHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 64 GDSQGVEEYY-KKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 64 g~~~~A~~~~-~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
...+..++.+ .+.+.. ..+.-+.-+.-... .|++.+|...|..++..+|.+.++...++.++...|. .+.|...
T Consensus 116 ~qPesqlr~~ld~~~~~---~~e~~~~~~~~~~~-~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~-~e~A~~i 190 (304)
T COG3118 116 AQPESQLRQFLDKVLPA---EEEEALAEAKELIE-AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGD-VEAAQAI 190 (304)
T ss_pred CCcHHHHHHHHHHhcCh---HHHHHHHHhhhhhh-ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCC-hHHHHHH
Confidence 4555555444 444333 22223333434555 8999999999999999999999999999999999884 8888887
Q ss_pred HHHH
Q 029199 143 YERA 146 (197)
Q Consensus 143 ~~~a 146 (197)
+...
T Consensus 191 L~~l 194 (304)
T COG3118 191 LAAL 194 (304)
T ss_pred HHhC
Confidence 7664
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.67 E-value=0.035 Score=48.26 Aligned_cols=95 Identities=18% Similarity=0.130 Sum_probs=70.3
Q ss_pred CCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCC----
Q 029199 63 GGDSQGVEEYYKKMVEENPG--NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA-DPGDGEILSQYAKLVWELHND---- 135 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~--~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l-~P~~~~~~~~lg~~l~~~~~~---- 135 (197)
.|+.++|++.++..++.+|. +..++.+|..++.. .+.+.++...+.+-=.+ -|+.+.+.+..+.+-.+.-.|
T Consensus 272 lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe-lq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~ 350 (539)
T PF04184_consen 272 LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE-LQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSP 350 (539)
T ss_pred hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh-cCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCc
Confidence 49999999999999998876 45588888888888 89999998888885333 377788877777554332222
Q ss_pred -----------HHHHHHHHHHHHHhCCCCHHHHH
Q 029199 136 -----------QDRAATYYERAVHASPEDSHVHA 158 (197)
Q Consensus 136 -----------~~~A~~~~~~al~~~p~~~~~~~ 158 (197)
-..|.+.+.+|++.||.-|..+.
T Consensus 351 e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 351 EAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred hhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 12467889999999987775543
No 260
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.64 E-value=0.17 Score=37.62 Aligned_cols=85 Identities=16% Similarity=-0.022 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 029199 86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLW 165 (197)
Q Consensus 86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 165 (197)
.+..+..+-.. .++.+.+...+...--+.|..+++...-|+++...+ ++.+|+..|+......|..+.+---++.|+.
T Consensus 12 gLie~~~~al~-~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~-~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 12 GLIEVLSVALR-LGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRG-DWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHc-cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhC-CHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 34444434444 789999999999999999999999999999999977 5999999999999999999999999999999
Q ss_pred HcCCccc
Q 029199 166 ETEEDND 172 (197)
Q Consensus 166 ~~g~~~e 172 (197)
.+|+.+-
T Consensus 90 ~~~D~~W 96 (160)
T PF09613_consen 90 ALGDPSW 96 (160)
T ss_pred HcCChHH
Confidence 9988765
No 261
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.62 E-value=0.022 Score=43.74 Aligned_cols=85 Identities=13% Similarity=0.137 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAA 140 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~ 140 (197)
|++++|+..++.++..--+. +.+-.+|+.+... +|++++|+..++.... +.-.+......|.++...| +.++|+
T Consensus 103 ~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q-~~k~D~AL~~L~t~~~-~~w~~~~~elrGDill~kg-~k~~Ar 179 (207)
T COG2976 103 NNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ-QKKADAALKTLDTIKE-ESWAAIVAELRGDILLAKG-DKQEAR 179 (207)
T ss_pred ccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH-hhhHHHHHHHHhcccc-ccHHHHHHHHhhhHHHHcC-chHHHH
Confidence 55555555555544321111 1123344544444 5555555554443321 1111222334455555544 245555
Q ss_pred HHHHHHHHhCC
Q 029199 141 TYYERAVHASP 151 (197)
Q Consensus 141 ~~~~~al~~~p 151 (197)
..|++++...+
T Consensus 180 ~ay~kAl~~~~ 190 (207)
T COG2976 180 AAYEKALESDA 190 (207)
T ss_pred HHHHHHHHccC
Confidence 55555555543
No 262
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.017 Score=45.91 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=82.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFL------SNYAQFLYQSKQDLPKAEEYYSRAILAD-----PGDGEILSQYAKLVWE 131 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~------~~la~~l~~~~g~~~~A~~~~~~al~l~-----P~~~~~~~~lg~~l~~ 131 (197)
.+++++|..++.++++-..++...| -..+ .+.+.+..+.++..+|++|..+. |+-+..-...+--..+
T Consensus 44 Ak~feKakdcLlkA~~~yEnnrslfhAAKayEqaa-mLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~le 122 (308)
T KOG1585|consen 44 AKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAA-MLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALE 122 (308)
T ss_pred hccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Confidence 5899999999999997665553332 2334 44444899999999999998873 5555544444434455
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCccccccCCCc
Q 029199 132 LHNDQDRAATYYERAVHASPEDS------HVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 132 ~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
.- +.++|++.|++++.+--... +.+-..+.++.++.+++|+...+.+
T Consensus 123 nv-~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 123 NV-KPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred cC-CHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 35 48999999999998753322 3456778889999999998665555
No 263
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.61 E-value=0.03 Score=38.98 Aligned_cols=87 Identities=15% Similarity=0.192 Sum_probs=65.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199 62 SGGDSQGVEEYYKKMVEENPGNPL---FLSNYAQFLYQSKQ-----------DLPKAEEYYSRAILADPGDGEILSQYAK 127 (197)
Q Consensus 62 ~~g~~~~A~~~~~~al~~~P~~~~---~~~~la~~l~~~~g-----------~~~~A~~~~~~al~l~P~~~~~~~~lg~ 127 (197)
..|++-+|++..+..+...+++.. .+..-|.+++. +. -.-.++++|.++..+.|+.+..++.+|.
T Consensus 8 ~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~-lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~ 86 (111)
T PF04781_consen 8 ARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYK-LAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELAS 86 (111)
T ss_pred HccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHH-HHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHH
Confidence 369999999999999999998874 44455655544 22 1235789999999999999888888887
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Q 029199 128 LVWELHNDQDRAATYYERAVHAS 150 (197)
Q Consensus 128 ~l~~~~~~~~~A~~~~~~al~~~ 150 (197)
-+-... +|+++..-.+++|.+.
T Consensus 87 ~l~s~~-~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 87 QLGSVK-YYKKAVKKAKRGLSVT 108 (111)
T ss_pred HhhhHH-HHHHHHHHHHHHhccc
Confidence 655544 5888888888888763
No 264
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.48 E-value=0.038 Score=46.71 Aligned_cols=109 Identities=16% Similarity=0.172 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHh---cCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHH---
Q 029199 64 GDSQGVEEYYKKMVEE----NPGNPLFLSNYAQFLYQS---KQDLPKAEEYYSR-AILADPGDGEILSQYAKLVWEL--- 132 (197)
Q Consensus 64 g~~~~A~~~~~~al~~----~P~~~~~~~~la~~l~~~---~g~~~~A~~~~~~-al~l~P~~~~~~~~lg~~l~~~--- 132 (197)
.+|+.-++..+..-.+ -++.+.+.+.+| +...+ .|+.++|++.+.. .....+.+++++...|.+|-..
T Consensus 155 qdydamI~Lve~l~~~p~~~~~~~~~i~~~ya-fALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~ 233 (374)
T PF13281_consen 155 QDYDAMIKLVETLEALPTCDVANQHNIKFQYA-FALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLE 233 (374)
T ss_pred hhHHHHHHHHHHhhccCccchhcchHHHHHHH-HHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH
Confidence 7889888888887666 456677777788 44444 7999999999999 5566789999999999876421
Q ss_pred -----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 029199 133 -----HNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDEC 174 (197)
Q Consensus 133 -----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~ 174 (197)
....++|+.+|.++.+++|+ ...=.|++.++...|...+..
T Consensus 234 s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~ 279 (374)
T PF13281_consen 234 SNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETS 279 (374)
T ss_pred cCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccch
Confidence 11378999999999999975 444567788888888755543
No 265
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.041 Score=46.62 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 029199 67 QGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQ-----------DLPKAEEYYSRAILADPGDGEILSQYAKLVWELHND 135 (197)
Q Consensus 67 ~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g-----------~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~ 135 (197)
.++++.=.+.+..+|+...+|+..-.++...+- -.++-+.....+++.+|++..+|+.+.+++.+....
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 578888889999999999999866534443233 456678888999999999999999999999887765
Q ss_pred -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 029199 136 -QDRAATYYERAVHASPEDSHVHASYAGFLWETEED 170 (197)
Q Consensus 136 -~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 170 (197)
+..-++.++++++.||.|..+|..+-.+.....+.
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS 161 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence 88999999999999999999999988888776555
No 266
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.41 E-value=0.018 Score=49.99 Aligned_cols=64 Identities=16% Similarity=0.362 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAK 127 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~ 127 (197)
+.+.+--+.|.+++..+|+++..|..-+...+...-+.+.|...|.++|+.+|++|..|.-+=.
T Consensus 119 ~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 119 KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFR 182 (568)
T ss_pred cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence 5577888999999999999999999888888874455999999999999999999999876543
No 267
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.063 Score=42.50 Aligned_cols=109 Identities=17% Similarity=0.104 Sum_probs=74.6
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH------HHHHHH
Q 029199 59 PAGSGGDSQGVEEYYKKMVEENPGNPL------FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGE------ILSQYA 126 (197)
Q Consensus 59 ~~~~~g~~~~A~~~~~~al~~~P~~~~------~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~------~~~~lg 126 (197)
.+....+..+|+.++++++++..+-.. .+..+|.++-....++++|+.+|+++-+....+-. .+..-+
T Consensus 82 ~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA 161 (288)
T KOG1586|consen 82 NCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVA 161 (288)
T ss_pred HHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHH
Confidence 455568999999999999998766543 34477866665457999999999999876543221 122233
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-------HHHHHHHHHcC
Q 029199 127 KLVWELHNDQDRAATYYERAVHASPEDSHVH-------ASYAGFLWETE 168 (197)
Q Consensus 127 ~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~-------~~la~~~~~~g 168 (197)
..-.+++ ++.+|++.|++..+..-+|+..- +.-|.|+.-..
T Consensus 162 ~yaa~le-qY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~ 209 (288)
T KOG1586|consen 162 QYAAQLE-QYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKA 209 (288)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcc
Confidence 3344556 48999999999988877776543 44556655533
No 268
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=0.047 Score=43.21 Aligned_cols=93 Identities=18% Similarity=0.140 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------C
Q 029199 86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEI------LSQYAKLVWELHNDQDRAATYYERAVHASPE------D 153 (197)
Q Consensus 86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~------~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~------~ 153 (197)
.+..-+.+ |+ ..+..+|+.++++++++.-+-... +..+|.+|-.--.++++|+.+|+++-+-... -
T Consensus 76 ~YveA~~c-yk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssA 153 (288)
T KOG1586|consen 76 TYVEAANC-YK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSA 153 (288)
T ss_pred HHHHHHHH-hh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhH
Confidence 34444433 44 469999999999999886443322 2356666544324699999999999766432 2
Q ss_pred HHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 154 SHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 154 ~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
-..+...+..-..+++|.+|++.|+++
T Consensus 154 NKC~lKvA~yaa~leqY~~Ai~iyeqv 180 (288)
T KOG1586|consen 154 NKCLLKVAQYAAQLEQYSKAIDIYEQV 180 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234667777788889999999998876
No 269
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.23 E-value=0.0071 Score=47.59 Aligned_cols=56 Identities=25% Similarity=0.281 Sum_probs=51.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 029199 98 KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS 154 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~ 154 (197)
.++.+.|.+.|.+++.+-|....-|+.+|...-+.| +++.|.+.|++.++++|++.
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag-~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAG-EFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcc-cHHHHHHHHHHHHcCCcccc
Confidence 789999999999999999999999999998877767 59999999999999999764
No 270
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.21 E-value=0.12 Score=42.73 Aligned_cols=111 Identities=20% Similarity=0.251 Sum_probs=84.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-C-----------------
Q 029199 61 GSGGDSQGVEEYYKKMVEENPG----NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG-D----------------- 118 (197)
Q Consensus 61 ~~~g~~~~A~~~~~~al~~~P~----~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~-~----------------- 118 (197)
...|.++.|...+.++...++. .+.+.+..+.+++. .|+..+|+..++..+..... +
T Consensus 157 Rk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~-~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (352)
T PF02259_consen 157 RKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA-QGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESL 235 (352)
T ss_pred HHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccc
Confidence 4459999999999999887622 46777888989998 99999999999988882111 1
Q ss_pred ----------------HHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccc
Q 029199 119 ----------------GEILSQYAKLVWEL-----HNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDND 172 (197)
Q Consensus 119 ----------------~~~~~~lg~~l~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 172 (197)
..++..+|...... ....+++...|..++..+|+...+|+.+|..+.+.=+.+.
T Consensus 236 ~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~ 310 (352)
T PF02259_consen 236 EVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDP 310 (352)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhh
Confidence 13344455555555 1247889999999999999999999999999887744443
No 271
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.03 Score=44.92 Aligned_cols=112 Identities=13% Similarity=0.082 Sum_probs=78.1
Q ss_pred HhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 029199 15 ALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFL 94 (197)
Q Consensus 15 a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l 94 (197)
|+..-...+..+|.+-.+|.-+-..+..+ ..+..+-+.++.+.++.+|.+-.+|..+-.++
T Consensus 62 Al~LT~d~i~lNpAnYTVW~yRr~iL~~l-------------------~~dL~~El~~l~eI~e~npKNYQvWHHRr~iv 122 (318)
T KOG0530|consen 62 ALQLTEDAIRLNPANYTVWQYRRVILRHL-------------------MSDLNKELEYLDEIIEDNPKNYQVWHHRRVIV 122 (318)
T ss_pred HHHHHHHHHHhCcccchHHHHHHHHHHHh-------------------HHHHHHHHHHHHHHHHhCccchhHHHHHHHHH
Confidence 44444445555666666666666665554 35678888889999999999999888887454
Q ss_pred HHhcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 029199 95 YQSKQDLP-KAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAV 147 (197)
Q Consensus 95 ~~~~g~~~-~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al 147 (197)
-. .|+.. .-++..+.++..|.+|--+|...-+++...+. ++.-+.+....|
T Consensus 123 e~-l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~-~~~EL~y~~~Ll 174 (318)
T KOG0530|consen 123 EL-LGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKD-YEDELAYADELL 174 (318)
T ss_pred HH-hcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhh-HHHHHHHHHHHH
Confidence 44 78777 77888888888888888888888777766663 555444443333
No 272
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.97 E-value=0.092 Score=46.91 Aligned_cols=99 Identities=21% Similarity=0.133 Sum_probs=76.0
Q ss_pred CCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHh---cC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVE-------ENPGNPLFLSNYAQFLYQS---KQ-DLPKAEEYYSRAILADPGDGEILSQYAKLVWE 131 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~-------~~P~~~~~~~~la~~l~~~---~g-~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~ 131 (197)
..|.+.|+.+|+.+.. .. ++.+.+.+|.++... .. +...|..+|.++-.+. ++.+.+.+|.++..
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYET 337 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHc
Confidence 4789999999999877 33 556778889776651 11 6788999999998765 56777888888766
Q ss_pred Hc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 029199 132 LH--NDQDRAATYYERAVHASPEDSHVHASYAGFLWET 167 (197)
Q Consensus 132 ~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 167 (197)
-. +|+.+|.++|..|... .+..+.++++.|+..-
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G 373 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELG 373 (552)
T ss_pred CCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhC
Confidence 33 4678999999998764 5788999999998764
No 273
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.93 E-value=0.025 Score=31.37 Aligned_cols=28 Identities=21% Similarity=0.139 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 029199 86 FLSNYAQFLYQSKQDLPKAEEYYSRAILA 114 (197)
Q Consensus 86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l 114 (197)
++.++|.++.. .|++++|+.++++++.+
T Consensus 4 ~~~~la~~~~~-~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRA-QGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-hhhcchhhHHHHHHHHH
Confidence 44555544444 56666666666555543
No 274
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.043 Score=48.42 Aligned_cols=115 Identities=15% Similarity=-0.030 Sum_probs=90.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNY--AQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAAT 141 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~l--a~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~ 141 (197)
|...-++..+..-+.++|+++..+... . ++....+....+.-..+.++..+|.+..+..+++..+...+..+.-+..
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~ls-i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~ 123 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLS-ILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALAD 123 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHH-hhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHH
Confidence 444457777777788999999985543 5 5555578888999999999999999999999999988887876666667
Q ss_pred HHHHHHHhCCCCHHHHHHH------HHHHHHcCCccccccCCCc
Q 029199 142 YYERAVHASPEDSHVHASY------AGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 142 ~~~~al~~~p~~~~~~~~l------a~~~~~~g~~~ea~~~~~~ 179 (197)
..+.+....|+|..+...+ +..+..+|+..++.....+
T Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 167 (620)
T COG3914 124 ISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALER 167 (620)
T ss_pred HHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 7777999999999988777 7777777877776544444
No 275
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.87 E-value=0.095 Score=42.23 Aligned_cols=73 Identities=16% Similarity=0.075 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 89 NYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGF 163 (197)
Q Consensus 89 ~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 163 (197)
++=..+.. .++++.|..+.++.+.++|.+|.-+...|.+|.+++. +.-|++-++..++..|+++.+-.-...+
T Consensus 186 ~lk~~~~~-e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c-~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 186 NLKAALLR-ELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC-YHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHH-hhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC-chhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34334454 7899999999999999999999999999999999995 7899999999999999998875544443
No 276
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.82 E-value=0.31 Score=39.47 Aligned_cols=111 Identities=14% Similarity=0.127 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHc-----C
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQS---KQDLPKAEEYYSRAILADPGD-GEILSQYAKLVWELH-----N 134 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~---~g~~~~A~~~~~~al~l~P~~-~~~~~~lg~~l~~~~-----~ 134 (197)
.+..+|+..|+. ..+..++.+.++||.++..- ..+..+|..+|++|.+..... ..+.+++|.++.. + -
T Consensus 91 ~~~~~A~~~~~~--~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~-g~~~~~~ 167 (292)
T COG0790 91 RDKTKAADWYRC--AAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLS-GLQALAV 167 (292)
T ss_pred ccHHHHHHHHHH--HhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc-Chhhhcc
Confidence 568889999994 45566888888899555541 128899999999998875443 3458888877666 3 1
Q ss_pred C--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C---CccccccCCCc
Q 029199 135 D--QDRAATYYERAVHASPEDSHVHASYAGFLWET-E---EDNDECDAPSE 179 (197)
Q Consensus 135 ~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g---~~~ea~~~~~~ 179 (197)
. ..+|..+|.++-... ++.+.+++|.+|..- | +..+|...|..
T Consensus 168 ~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~ 216 (292)
T COG0790 168 AYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKK 216 (292)
T ss_pred cHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHH
Confidence 2 337999999987766 788999999888764 2 44555555555
No 277
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.78 E-value=0.3 Score=43.96 Aligned_cols=114 Identities=19% Similarity=0.227 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-------------------H
Q 029199 63 GGDSQGVEEYYKKMVEENPGN----PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD-------------------G 119 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~----~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~-------------------~ 119 (197)
.|+.+.|...|+++++.+-.. ..+|.+.|..=.. ..+++.|+.+.++|.. -|.+ .
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr-h~~~~~Al~lm~~A~~-vP~~~~~~~yd~~~pvQ~rlhrSl 477 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR-HENFEAALKLMRRATH-VPTNPELEYYDNSEPVQARLHRSL 477 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh-hhhHHHHHHHHHhhhc-CCCchhhhhhcCCCcHHHHHHHhH
Confidence 467777777777776655322 4566666644343 5666666666666653 2333 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 120 EILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 120 ~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
-+|..++...-..|- ++.....|++.+.+.=-.|.+..|+|.++.+..-++++-+.|++
T Consensus 478 kiWs~y~DleEs~gt-festk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YEr 536 (835)
T KOG2047|consen 478 KIWSMYADLEESLGT-FESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYER 536 (835)
T ss_pred HHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 344455555555553 56666666666666655566666666666666666666555554
No 278
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.68 E-value=0.056 Score=47.02 Aligned_cols=79 Identities=10% Similarity=-0.082 Sum_probs=66.7
Q ss_pred CCCCCCCcccCCCCCHHHHHHHHHHHHH---------h---------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 029199 51 GGGGSGFYPAGSGGDSQGVEEYYKKMVE---------E---------NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAI 112 (197)
Q Consensus 51 ~~~~~~~~~~~~~g~~~~A~~~~~~al~---------~---------~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al 112 (197)
+.|.+.|......|.|..+..+|.+|++ + ....-++++|.|..+.- .|+.-.|.+||.+++
T Consensus 284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh-~grPl~AfqCf~~av 362 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLH-SGRPLLAFQCFQKAV 362 (696)
T ss_pred eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHh-cCCcHHHHHHHHHHH
Confidence 3567778888889999999999999996 1 12346789999955555 999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHH
Q 029199 113 LADPGDGEILSQYAKLVW 130 (197)
Q Consensus 113 ~l~P~~~~~~~~lg~~l~ 130 (197)
.....||-.|..++.+..
T Consensus 363 ~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 363 HVFHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHhcCcHHHHHHHHHHH
Confidence 999999999999998765
No 279
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.65 E-value=0.62 Score=36.45 Aligned_cols=104 Identities=19% Similarity=0.166 Sum_probs=68.4
Q ss_pred ccCCCCCHHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHhCCC------C
Q 029199 59 PAGSGGDSQGVEEYYKKMVEE----NPGN---PLFLSNYAQFLYQSKQDL-------PKAEEYYSRAILADPG------D 118 (197)
Q Consensus 59 ~~~~~g~~~~A~~~~~~al~~----~P~~---~~~~~~la~~l~~~~g~~-------~~A~~~~~~al~l~P~------~ 118 (197)
.+....++++|++.|.-|+-. ..++ +..+..+| .+++..++. .+|++.|+++++.... .
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlA-WlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~ 164 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLA-WLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDE 164 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchH
Confidence 444457889999998887642 2222 34566677 455447874 4566667777665432 3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Q 029199 119 GEILSQYAKLVWELHNDQDRAATYYERAVHASPED-SHVHASYAGFL 164 (197)
Q Consensus 119 ~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~ 164 (197)
..+.+.+|.+.+.+|+ +++|..+|.+++.....+ +..+.+++.=+
T Consensus 165 ~~l~YLigeL~rrlg~-~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~ 210 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGN-YDEAKRWFSRVIGSKKASKEPKLKDMARDQ 210 (214)
T ss_pred HHHHHHHHHHHHHhCC-HHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 5788889999999895 899999999998764222 23555555443
No 280
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.58 E-value=0.34 Score=37.44 Aligned_cols=79 Identities=11% Similarity=0.106 Sum_probs=59.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHc
Q 029199 93 FLYQSKQDLPKAEEYYSRAILA-DPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPE----DSHVHASYAGFLWET 167 (197)
Q Consensus 93 ~l~~~~g~~~~A~~~~~~al~l-~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~ 167 (197)
..+. ....++|...|-++-.. .=++++..+.+|..|. ++|.++++..|-++|++.+. |++++..++.++.++
T Consensus 115 y~Ws-r~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~--krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~ 191 (203)
T PF11207_consen 115 YHWS-RFGDQEALRRFLQLEGTPELETAELQYALATYYT--KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL 191 (203)
T ss_pred HHhh-ccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 3444 33456677766555321 1278999999997665 44689999999999998643 699999999999999
Q ss_pred CCccccc
Q 029199 168 EEDNDEC 174 (197)
Q Consensus 168 g~~~ea~ 174 (197)
|++++|-
T Consensus 192 ~~~e~AY 198 (203)
T PF11207_consen 192 KNYEQAY 198 (203)
T ss_pred cchhhhh
Confidence 9999874
No 281
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=95.58 E-value=0.059 Score=29.68 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHH--HHHHHHhCCCC
Q 029199 85 LFLSNYAQFLYQSKQDLPKAEEY--YSRAILADPGD 118 (197)
Q Consensus 85 ~~~~~la~~l~~~~g~~~~A~~~--~~~al~l~P~~ 118 (197)
+.|+.+|..++. +|++++|++. |+-+..++|.|
T Consensus 2 e~~y~~a~~~y~-~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQ-KGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhcccC
Confidence 345566655555 6666666666 44666666543
No 282
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.55 E-value=0.59 Score=33.90 Aligned_cols=83 Identities=14% Similarity=0.106 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHH--hcCCHHHHHHHHHHHHH-hCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 029199 84 PLFLSNYAQFLYQ--SKQDLPKAEEYYSRAIL-ADP-GDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHAS 159 (197)
Q Consensus 84 ~~~~~~la~~l~~--~~g~~~~A~~~~~~al~-l~P-~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 159 (197)
....++++..+.. ...+..+.+.+++..++ -.| ..-+..+.++..++++++ |++++.+++..|+..|+|..+..-
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlke-Y~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKE-YSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhh-HHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4456677755554 12366788999999997 444 344678888999999995 999999999999999999998766
Q ss_pred HHHHHHHc
Q 029199 160 YAGFLWET 167 (197)
Q Consensus 160 la~~~~~~ 167 (197)
.-.+..+.
T Consensus 111 k~~ied~i 118 (149)
T KOG3364|consen 111 KETIEDKI 118 (149)
T ss_pred HHHHHHHH
Confidence 55555443
No 283
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=0.19 Score=43.72 Aligned_cols=112 Identities=12% Similarity=0.039 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCHHH----HHHHHHHHHHHcC
Q 029199 65 DSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD---PGDGEI----LSQYAKLVWELHN 134 (197)
Q Consensus 65 ~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~---P~~~~~----~~~lg~~l~~~~~ 134 (197)
+...+++|++..+...|.+ +..+..+|.+++....+.+.|..++++|..+- |+..++ ...++.++.+..+
T Consensus 24 kIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~ 103 (629)
T KOG2300|consen 24 KIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQ 103 (629)
T ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcC
Confidence 7889999999999998876 44677889999988999999999999998774 544333 3445666777665
Q ss_pred CHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHcCCccccccC
Q 029199 135 DQDRAATYYERAVHASPEDSHV----HASYAGFLWETEEDNDECDA 176 (197)
Q Consensus 135 ~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~g~~~ea~~~ 176 (197)
.+..+...+++++++..+.|.. .+.++.++.-..++.-|++.
T Consensus 104 s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~el 149 (629)
T KOG2300|consen 104 SFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALEL 149 (629)
T ss_pred CCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHH
Confidence 5788999999999998777743 45677777777777766544
No 284
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.50 E-value=0.036 Score=30.72 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 029199 119 GEILSQYAKLVWELHNDQDRAATYYERAVHAS 150 (197)
Q Consensus 119 ~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~ 150 (197)
..++.++|.+|...|+ +++|+.++++++.+.
T Consensus 2 a~~~~~la~~~~~~g~-~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGR-YEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhh-cchhhHHHHHHHHHH
Confidence 3578899999999875 999999999999864
No 285
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.49 E-value=0.084 Score=36.79 Aligned_cols=82 Identities=18% Similarity=0.151 Sum_probs=63.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHHH
Q 029199 91 AQFLYQSKQDLPKAEEYYSRAILADPGDG---EILSQYAKLVWELHN----------DQDRAATYYERAVHASPEDSHVH 157 (197)
Q Consensus 91 a~~l~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~lg~~l~~~~~----------~~~~A~~~~~~al~~~p~~~~~~ 157 (197)
+.-++. .|++-+|++..+..+..++++. ..+..-|.+++.+.. .+--++++|.++..+.|..+..+
T Consensus 3 A~~~~~-rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 3 AKDYFA-RGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred HHHHHH-ccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 334566 8999999999999999998877 556666777765544 24468999999999999998888
Q ss_pred HHHHHHHHHcCCcccc
Q 029199 158 ASYAGFLWETEEDNDE 173 (197)
Q Consensus 158 ~~la~~~~~~g~~~ea 173 (197)
+.+|.-+...--|+++
T Consensus 82 ~~la~~l~s~~~Ykk~ 97 (111)
T PF04781_consen 82 FELASQLGSVKYYKKA 97 (111)
T ss_pred HHHHHHhhhHHHHHHH
Confidence 9888876555555554
No 286
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.47 E-value=0.4 Score=42.57 Aligned_cols=110 Identities=16% Similarity=0.066 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD-PGDGEILSQYAKLVWELHNDQDRAAT 141 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~l~~~~~~~~~A~~ 141 (197)
.|+++...-.|++++---.....+|.+++..+.. .|+.+-|...+.++.++. |+.|.++...+.+--..| +++.|..
T Consensus 310 ~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~-~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~-n~~~A~~ 387 (577)
T KOG1258|consen 310 LGDFSRVFILFERCLIPCALYDEFWIKYARWMES-SGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNG-NFDDAKV 387 (577)
T ss_pred cccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHH-cCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhc-cHHHHHH
Confidence 4999999999999999999999999999988777 899999999999888774 888889888887766655 6999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 029199 142 YYERAVHASPEDSHVHASYAGFLWETEEDNDEC 174 (197)
Q Consensus 142 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~ 174 (197)
.|++...-.|+...+-.....+..+.|..+.+.
T Consensus 388 ~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 388 ILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 999999888999999999999999999888865
No 287
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.38 E-value=0.4 Score=35.30 Aligned_cols=86 Identities=7% Similarity=-0.053 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
.++++++...+...--+.|+.+.+..--|.++.. .|++.+|+..++....-.|..|...-.++.|++.++ |. .=..+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~-rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~-Dp-~Wr~~ 99 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIA-RGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG-DA-EWHVH 99 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHH-cCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC-Ch-HHHHH
Confidence 4677777777777777888888877777755554 788888888888888777777877777888877766 43 44444
Q ss_pred HHHHHHhCC
Q 029199 143 YERAVHASP 151 (197)
Q Consensus 143 ~~~al~~~p 151 (197)
-..++..++
T Consensus 100 A~~~le~~~ 108 (153)
T TIGR02561 100 ADEVLARDA 108 (153)
T ss_pred HHHHHHhCC
Confidence 555555544
No 288
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.29 E-value=0.24 Score=42.09 Aligned_cols=116 Identities=16% Similarity=0.060 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCHH---HHHHHHHHHHHHcCCH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA---DPGDGE---ILSQYAKLVWELHNDQ 136 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l---~P~~~~---~~~~lg~~l~~~~~~~ 136 (197)
.|+.+.|.++-+.+..+.|.-+.++...-..... .|+++.|+++.+...+. .|+-.+ +-..-+..-..+.-|.
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~-~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQLPWAARATLEARCA-AGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHh-cCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 3888888888888888888888877655435555 78888888777654433 222211 1111111222223345
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 137 DRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 137 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
..|.+.-..++++.|+-..+-.--+..+++.|+..++-..+++
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~ 288 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILET 288 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHH
Confidence 6677777777777777777777777777777777776555554
No 289
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.26 E-value=0.0082 Score=49.25 Aligned_cols=64 Identities=8% Similarity=0.144 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAK 127 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~ 127 (197)
|-+.+--..|.++++.+|.+.+.|......=+...++++.++..|.++|+.+|++|-+|..+-.
T Consensus 121 k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 121 KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 6677778889999999999999998744344444899999999999999999999999977643
No 290
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.24 E-value=0.32 Score=43.75 Aligned_cols=117 Identities=19% Similarity=0.258 Sum_probs=87.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-H-HcCCHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD--PGDGEILSQYAKLVW-E-LHNDQDR 138 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~l~-~-~~~~~~~ 138 (197)
.|-++.....|++.+.+.--.|.+..|+|.++-. ..-++++.+.|++-+.+. |.-.++|..+-.... + .|...+.
T Consensus 490 ~gtfestk~vYdriidLriaTPqii~NyAmfLEe-h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIATPQIIINYAMFLEE-HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred hccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 3888999999999999999999999999977766 788999999999999986 566677776643221 2 2445899
Q ss_pred HHHHHHHHHHhCCC-CH-HHHHHHHHHHHHcCCccccccCCCcc
Q 029199 139 AATYYERAVHASPE-DS-HVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 139 A~~~~~~al~~~p~-~~-~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
|.++|++||+..|. +. .++..++.+-.+-|-...|...+++.
T Consensus 569 aRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 569 ARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999998873 22 23455555555556655566665553
No 291
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.24 E-value=0.088 Score=44.29 Aligned_cols=113 Identities=13% Similarity=0.053 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--H----HHHHHHHHHHHHHc
Q 029199 65 DSQGVEEYYKKMVEENPGNP-----LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD--G----EILSQYAKLVWELH 133 (197)
Q Consensus 65 ~~~~A~~~~~~al~~~P~~~-----~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~--~----~~~~~lg~~l~~~~ 133 (197)
++.+++.+-.-.+.+-...+ .++..++..... ++.++++++.|++|++.-.++ + .+...+|.++-+++
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlg-ls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLG-LSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhh-HHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 44455555544444432222 345556666666 788999999999998874433 3 45677888877777
Q ss_pred CCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 134 NDQDRAATYYERAVHASPE----------DSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 134 ~~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
|+++|+.+..+|.++--+ ...+++.++..+..+|+.-+|.+.-++
T Consensus 177 -D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~E 231 (518)
T KOG1941|consen 177 -DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEE 231 (518)
T ss_pred -hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 689999999998887422 224567888888888888776544443
No 292
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.18 E-value=0.047 Score=47.89 Aligned_cols=81 Identities=21% Similarity=0.086 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccC
Q 029199 99 QDLPKAEEYYSRAILADPGDGEILSQYAKLVWELH--NDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDA 176 (197)
Q Consensus 99 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~ 176 (197)
+....|+..|.++++..|.....+.|++.++.+-+ ++.-.|+.-...|++++|....+|+.++.++.+++++.+|...
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence 56788999999999999999999999998776532 1344788888999999999999999999999999999999765
Q ss_pred CCc
Q 029199 177 PSE 179 (197)
Q Consensus 177 ~~~ 179 (197)
...
T Consensus 468 ~~a 470 (758)
T KOG1310|consen 468 HWA 470 (758)
T ss_pred HHH
Confidence 554
No 293
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.11 E-value=0.12 Score=41.44 Aligned_cols=62 Identities=23% Similarity=0.194 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199 69 VEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWE 131 (197)
Q Consensus 69 A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~ 131 (197)
|+.+|.+|+.+.|++...|+.+|.+... .|+.=.|+-+|-|++....-.+.+..|+..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~-~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASY-QGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHH-TT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcc-ccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6789999999999999999999955555 8899999999988887665568888998877666
No 294
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.04 E-value=0.11 Score=41.62 Aligned_cols=62 Identities=26% Similarity=0.288 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199 104 AEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWE 166 (197)
Q Consensus 104 A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 166 (197)
|+.+|.+|+.+.|++...++.+|.+....+ +.=.|+-+|-|++...-..+.+..|+..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~-~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQG-DDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT--HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcccc-chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 689999999999999999999999888866 46799999999998775569999999999999
No 295
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.91 E-value=0.34 Score=37.29 Aligned_cols=87 Identities=15% Similarity=0.126 Sum_probs=67.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Q 029199 89 NYAQFLYQSKQDLPKAEEYYSRAILADPGDG----EILSQYAKLVWELHNDQDRAATYYERAVHASPE-DSHVHASYAGF 163 (197)
Q Consensus 89 ~la~~l~~~~g~~~~A~~~~~~al~l~P~~~----~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 163 (197)
.++..... .+++++|+..++.++. .|.|. -+..+++.++.+++. +++|+..++.... ++ .+..-...|.+
T Consensus 94 ~lAk~~ve-~~~~d~A~aqL~~~l~-~t~De~lk~l~~lRLArvq~q~~k-~D~AL~~L~t~~~--~~w~~~~~elrGDi 168 (207)
T COG2976 94 ELAKAEVE-ANNLDKAEAQLKQALA-QTKDENLKALAALRLARVQLQQKK-ADAALKTLDTIKE--ESWAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHh-hccHHHHHHHHHHHHc-cchhHHHHHHHHHHHHHHHHHhhh-HHHHHHHHhcccc--ccHHHHHHHHhhhH
Confidence 45556666 7899999999999986 34443 456778999999885 9999998877532 22 23456788999
Q ss_pred HHHcCCccccccCCCcc
Q 029199 164 LWETEEDNDECDAPSEL 180 (197)
Q Consensus 164 ~~~~g~~~ea~~~~~~~ 180 (197)
+...|+-++|...|...
T Consensus 169 ll~kg~k~~Ar~ay~kA 185 (207)
T COG2976 169 LLAKGDKQEARAAYEKA 185 (207)
T ss_pred HHHcCchHHHHHHHHHH
Confidence 99999999998888774
No 296
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.82 E-value=0.33 Score=38.81 Aligned_cols=115 Identities=14% Similarity=0.107 Sum_probs=72.5
Q ss_pred CCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEEN-----PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD------GEILSQYAKLVWEL 132 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~-----P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~l~~~ 132 (197)
..+.++..+|+++..+. |+-+..-...+.-... .-++++|++.|++++.+--.+ .+.+...+.+|..+
T Consensus 85 ~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~le-nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 85 SKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALE-NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 56677777788777653 4444444444434444 678999999999988764322 23444556778887
Q ss_pred cCCHHHHHHHHHHHH----HhC--CCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 133 HNDQDRAATYYERAV----HAS--PEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 133 ~~~~~~A~~~~~~al----~~~--p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.+ +++|...+.+-. ..+ |+....+.....++....++..|.+.++..
T Consensus 164 ~k-f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 164 EK-FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred HH-hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence 76 778777665543 333 333334444445555556999998888884
No 297
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=94.74 E-value=0.12 Score=26.76 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHH
Q 029199 102 PKAEEYYSRAILADPGDGEILSQY 125 (197)
Q Consensus 102 ~~A~~~~~~al~l~P~~~~~~~~l 125 (197)
+.+...|++++...|.++.+|..+
T Consensus 4 ~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 4 ERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred HHHHHHHHHHHHHCCCChHHHHHH
Confidence 334444444444444444444333
No 298
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.72 E-value=0.083 Score=42.57 Aligned_cols=69 Identities=16% Similarity=0.002 Sum_probs=60.6
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 59 PAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKL 128 (197)
Q Consensus 59 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~ 128 (197)
.++..++++.|..+.++.+.++|+++.-+.-.|.+|.. +|-+.-|++.++..++.-|+++.+-.-....
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~q-l~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQ-LGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHh-cCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 44556999999999999999999999999999966665 9999999999999999999999887666543
No 299
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.64 E-value=0.89 Score=40.70 Aligned_cols=102 Identities=21% Similarity=0.165 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----CCHHH
Q 029199 65 DSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSK--QDLPKAEEYYSRAILADPGDGEILSQYAKLVWELH----NDQDR 138 (197)
Q Consensus 65 ~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~--g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~----~~~~~ 138 (197)
+...|+.+|.++.... ++.+.+.+|.++.... .+..+|.++|..|.+. .++.+.++++.++.. | ++.++
T Consensus 308 d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~-G~gv~r~~~~ 382 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL-GLGVERNLEL 382 (552)
T ss_pred cHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh-CCCcCCCHHH
Confidence 8899999999998886 4555667785555422 2467999999999764 578899999988665 5 46889
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCcccc
Q 029199 139 AATYYERAVHASPEDSHVHASYAGFLWET-EEDNDE 173 (197)
Q Consensus 139 A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~ea 173 (197)
|..++.++.+.. ++.+.+.++.++... ++.+.+
T Consensus 383 A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~ 416 (552)
T KOG1550|consen 383 AFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTA 416 (552)
T ss_pred HHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHH
Confidence 999999999987 567777777666554 555543
No 300
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.58 E-value=0.25 Score=38.20 Aligned_cols=71 Identities=21% Similarity=0.196 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHHH
Q 029199 67 QGVEEYYKKMVE-ENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG----DGEILSQYAKLVWELHNDQDRAA 140 (197)
Q Consensus 67 ~~A~~~~~~al~-~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~----~~~~~~~lg~~l~~~~~~~~~A~ 140 (197)
+.|.+.|-++-. -.=++++..+.|| .+|. ..+.++++..+-++|++.+. ||++...++.++++.++ +++|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~-~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALA-TYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN-YEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc-hhhhh
Confidence 456666655422 1235688899999 5565 68999999999999999644 59999999999999885 87764
No 301
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.57 E-value=0.58 Score=40.53 Aligned_cols=114 Identities=13% Similarity=0.105 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH--HHHHHHh------------CCCCHHHHHHHHH--
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEY--YSRAILA------------DPGDGEILSQYAK-- 127 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~--~~~al~l------------~P~~~~~~~~lg~-- 127 (197)
+.-++|+..++.+++..|.|...-+.. +.+. ...|.+|+.. +-+.+.+ .-.+.+..+-++.
T Consensus 394 ~~dekalnLLk~il~ft~yD~ec~n~v--~~fv-Kq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE 470 (549)
T PF07079_consen 394 QCDEKALNLLKLILQFTNYDIECENIV--FLFV-KQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE 470 (549)
T ss_pred CccHHHHHHHHHHHHhccccHHHHHHH--HHHH-HHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence 557899999999999999887654422 2222 3445555332 3333333 1245555555554
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcccc
Q 029199 128 LVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELDS 182 (197)
Q Consensus 128 ~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~~ 182 (197)
.++..| ++.++.-+-....++.| .+.++.-+|.|+....+|+||-..+..+|.
T Consensus 471 yLysqg-ey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 471 YLYSQG-EYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHhcc-cHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 356656 69999999999999999 799999999999999999999999998874
No 302
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.46 E-value=0.93 Score=38.69 Aligned_cols=104 Identities=17% Similarity=0.131 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYY 143 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~ 143 (197)
-+...|...-.+++++.|+...+-..-+..++. .|+..++-..++.+-+.+| +|+++..| +....| +.+++-+
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~-d~~~rKg~~ilE~aWK~eP-HP~ia~lY--~~ar~g---dta~dRl 315 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFR-DGNLRKGSKILETAWKAEP-HPDIALLY--VRARSG---DTALDRL 315 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHh-ccchhhhhhHHHHHHhcCC-ChHHHHHH--HHhcCC---CcHHHHH
Confidence 456677777778888888887777666667776 7888888888888877777 34444333 222322 2344444
Q ss_pred HHH---HHhCCCCHHHHHHHHHHHHHcCCccccc
Q 029199 144 ERA---VHASPEDSHVHASYAGFLWETEEDNDEC 174 (197)
Q Consensus 144 ~~a---l~~~p~~~~~~~~la~~~~~~g~~~ea~ 174 (197)
+++ -.+.|+|.+..+..+..-..-|++..|.
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~AR 349 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAAR 349 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHH
Confidence 443 3345777777777766666666665543
No 303
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.31 E-value=0.83 Score=37.05 Aligned_cols=117 Identities=16% Similarity=0.116 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHh----C---CCCH-------
Q 029199 63 GGDSQGVEEYYKKMVEEN----PGN----PLFLSNYAQFLYQSKQ-DLPKAEEYYSRAILA----D---PGDG------- 119 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~----P~~----~~~~~~la~~l~~~~g-~~~~A~~~~~~al~l----~---P~~~------- 119 (197)
.|+++.|..+|.++-... |+. ....++.|..++. .+ +++.|..++++++++ . ...+
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~-~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS-KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 599999999999986654 443 4467778877777 77 999999999999988 2 2222
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 120 EILSQYAKLVWELHN--DQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 120 ~~~~~lg~~l~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.++..++.++.+.+. ..++|...++.+-.-.|+.+.++.-.-.++.+.++.++..+.+.++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~m 147 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRM 147 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHH
Confidence 345556667766553 1345566666665566888888855556666677777777777665
No 304
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=94.17 E-value=0.097 Score=46.56 Aligned_cols=108 Identities=14% Similarity=0.045 Sum_probs=83.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 029199 70 EEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG--EILSQYAKLVWELHNDQDRAATYYERAV 147 (197)
Q Consensus 70 ~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~lg~~l~~~~~~~~~A~~~~~~al 147 (197)
-..+..+++.+|.+...+. ++.+|++..|+..+|..|+..++-+-|+.. .++..+|.++...|. ..+|--.+..|+
T Consensus 199 ~~~~~~glq~~~~sw~lH~-~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~-sadA~iILhAA~ 276 (886)
T KOG4507|consen 199 GHLIHEGLQKNTSSWVLHN-MASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGF-SADAAVILHAAL 276 (886)
T ss_pred HHHHHHhhhcCchhHHHHH-HHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHccc-ccchhheeehhc
Confidence 3445677888887777665 566888889999999999999998877644 578889999999886 677877788887
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 148 HASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 148 ~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
.-.|.-..-++.++.++..+|.+....-.|..
T Consensus 277 ~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydh 308 (886)
T KOG4507|consen 277 DDADFFTSNYYTLGNIYAMLGEYNHSVLCYDH 308 (886)
T ss_pred cCCccccccceeHHHHHHHHhhhhhhhhhhhh
Confidence 77676666688999999998887765544443
No 305
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=94.15 E-value=0.18 Score=26.01 Aligned_cols=30 Identities=27% Similarity=0.527 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQF 93 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~ 93 (197)
|+.+.+...|++++...|.++.+|..+..+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567899999999999999999999988744
No 306
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.12 E-value=1.7 Score=32.04 Aligned_cols=74 Identities=16% Similarity=-0.001 Sum_probs=65.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccc
Q 029199 98 KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDND 172 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 172 (197)
..+.+++...+...=-+.|+.+++..--|+++...|+ +++|+..|+...+-.+..|...--++.|+.-+|+.+-
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~-w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGN-YDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEW 96 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCC-HHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHH
Confidence 7899999999999889999999999999999999775 9999999999988888878888888888888887654
No 307
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.11 E-value=0.22 Score=27.40 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 029199 119 GEILSQYAKLVWELHNDQDRAATY--YERAVHASPED 153 (197)
Q Consensus 119 ~~~~~~lg~~l~~~~~~~~~A~~~--~~~al~~~p~~ 153 (197)
++.++.+|..++..|+ +++|++. |+-+..++|.|
T Consensus 1 ~e~~y~~a~~~y~~~k-y~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGK-YDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHTTT-
T ss_pred CcHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhcccC
Confidence 3567888988888775 9999999 55888888765
No 308
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=94.06 E-value=0.47 Score=41.93 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=50.2
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 029199 74 KKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS 150 (197)
Q Consensus 74 ~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~ 150 (197)
++-++.+|.|...|+.|-.-+. ..-+++.+..|++.+...|..+.+|-.+.......+ +|+.-...|.++|..-
T Consensus 10 ~~rie~nP~di~sw~~lire~q--t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~sk-dfe~VEkLF~RCLvkv 83 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQ--TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASK-DFESVEKLFSRCLVKV 83 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHc--cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHH
Confidence 5567777777777776663333 347777777777777777777777777776666655 4777777777776543
No 309
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.64 E-value=1.8 Score=30.79 Aligned_cols=83 Identities=13% Similarity=0.102 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CCCCHHHH--
Q 029199 64 GDSQGVEEYYKKMVEENPG------------NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA-------DPGDGEIL-- 122 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~------------~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l-------~P~~~~~~-- 122 (197)
|.|++|...++++....-. |...|..|+..+.. +|+|++++..-+++|.. +.+....|
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~-Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa 101 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG-LGRYDECLQSADRALRYFNRRGELHQDEGKLWIA 101 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence 8899999999999876422 34567778877777 99999887777777653 44444433
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199 123 --SQYAKLVWELHNDQDRAATYYERAVH 148 (197)
Q Consensus 123 --~~lg~~l~~~~~~~~~A~~~~~~al~ 148 (197)
++.+..+..+|+ .++|+..|+.+-+
T Consensus 102 aVfsra~Al~~~Gr-~~eA~~~fr~agE 128 (144)
T PF12968_consen 102 AVFSRAVALEGLGR-KEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-hHHHHHHHHHHHH
Confidence 456777888887 7888888888754
No 310
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.61 E-value=0.41 Score=41.45 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=60.3
Q ss_pred CHHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----H
Q 029199 83 NPLFLSNY--AQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS-----H 155 (197)
Q Consensus 83 ~~~~~~~l--a~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~-----~ 155 (197)
+.+.-+-| |..++. +|++.++.-+-....++.| +|.++..+|.+++..++ |++|..++... |.|. .
T Consensus 459 e~eian~LaDAEyLys-qgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~-Y~eA~~~l~~L----P~n~~~~dsk 531 (549)
T PF07079_consen 459 EEEIANFLADAEYLYS-QGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKR-YQEAWEYLQKL----PPNERMRDSK 531 (549)
T ss_pred HHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhh-HHHHHHHHHhC----CCchhhHHHH
Confidence 34444444 456777 8999999999999999999 99999999999999885 99999998775 3333 4
Q ss_pred HHHHHHHHHHHcC
Q 029199 156 VHASYAGFLWETE 168 (197)
Q Consensus 156 ~~~~la~~~~~~g 168 (197)
++-.++.|+..+-
T Consensus 532 vqKAl~lCqKh~~ 544 (549)
T PF07079_consen 532 VQKALALCQKHLP 544 (549)
T ss_pred HHHHHHHHHHhhh
Confidence 4555666665543
No 311
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.56 E-value=0.49 Score=34.30 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHH-hCCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVE-ENPGNP-LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVW 130 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~-~~P~~~-~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~ 130 (197)
..+..+.+.+++..++ -.|... +..+.|+.-+++ .++|++++.+.+..|+.+|+|.++.-..-.+.-
T Consensus 48 ~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR-lkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied 116 (149)
T KOG3364|consen 48 TEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR-LKEYSKSLRYVDALLETEPNNRQALELKETIED 116 (149)
T ss_pred hHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH-HhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 3677889999999997 556543 345556756666 999999999999999999999998766554433
No 312
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.53 E-value=1.7 Score=35.74 Aligned_cols=89 Identities=15% Similarity=0.173 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHHHHHhCCC----------------------------------CHHHHHHHHHHHHHhc------CCHH
Q 029199 63 GGDSQGVEEYYKKMVEENPG----------------------------------NPLFLSNYAQFLYQSK------QDLP 102 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~----------------------------------~~~~~~~la~~l~~~~------g~~~ 102 (197)
.|+..+|+..++..+..... .+.++..+|.+... . +..+
T Consensus 197 ~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~-~~~~~~~~~~~ 275 (352)
T PF02259_consen 197 QGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDE-LYSKLSSESSD 275 (352)
T ss_pred cCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHh-hccccccccHH
Confidence 48889999998888871110 13456677766665 6 8899
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC----------------CHHHHHHHHHHHHHhCCC
Q 029199 103 KAEEYYSRAILADPGDGEILSQYAKLVWELHN----------------DQDRAATYYERAVHASPE 152 (197)
Q Consensus 103 ~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~----------------~~~~A~~~~~~al~~~p~ 152 (197)
+++..|+++++++|....+|+.+|..+...-. ....|+.+|-+++...|.
T Consensus 276 ~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 276 EILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999987654321 123588888888888877
No 313
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.41 E-value=0.22 Score=43.47 Aligned_cols=89 Identities=16% Similarity=0.061 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYY 143 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~ 143 (197)
|+|+.+.+.+..+-..-..-..+..-+-.-++. .+++++|...-+-.|..+-.++++..--+..-.+++ .++++..++
T Consensus 337 g~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~-l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~-~~d~~~~~w 414 (831)
T PRK15180 337 GYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHG-LARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQ-LFDKSYHYW 414 (831)
T ss_pred hhHHHHHHHhhchhhhhcCCchHHHHHHHhhhc-hhhHHHHHHHHHHHhccccCChhheeeecccHHHHh-HHHHHHHHH
Confidence 555555555544433322222222222223444 556666666666666555555655544444444445 467777777
Q ss_pred HHHHHhCCCCH
Q 029199 144 ERAVHASPEDS 154 (197)
Q Consensus 144 ~~al~~~p~~~ 154 (197)
.+.+.++|...
T Consensus 415 k~~~~~~~~~~ 425 (831)
T PRK15180 415 KRVLLLNPETQ 425 (831)
T ss_pred HHHhccCChhc
Confidence 77777766533
No 314
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.20 E-value=3.1 Score=33.94 Aligned_cols=95 Identities=18% Similarity=0.083 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYY 143 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~ 143 (197)
.++..=+...+++++. ....++..++..+.. .++++.++..+++.+..+|.+..+|..+-..|...|. ...|+..|
T Consensus 135 ~~f~~WV~~~R~~l~e--~~~~~l~~lae~~~~-~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~-~~~ai~~y 210 (280)
T COG3629 135 DRFDEWVLEQRRALEE--LFIKALTKLAEALIA-CGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGR-QSAAIRAY 210 (280)
T ss_pred chHHHHHHHHHHHHHH--HHHHHHHHHHHHHHh-cccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC-chHHHHHH
Confidence 3355545445554443 356678888877776 8999999999999999999999999999999999775 78999999
Q ss_pred HHHHHh-------CCCCHHHHHHHHHH
Q 029199 144 ERAVHA-------SPEDSHVHASYAGF 163 (197)
Q Consensus 144 ~~al~~-------~p~~~~~~~~la~~ 163 (197)
++.-+. +|. +.++..+..+
T Consensus 211 ~~l~~~~~edlgi~P~-~~~~~~y~~~ 236 (280)
T COG3629 211 RQLKKTLAEELGIDPA-PELRALYEEI 236 (280)
T ss_pred HHHHHHhhhhcCCCcc-HHHHHHHHHH
Confidence 888663 243 4555555555
No 315
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.04 E-value=0.52 Score=31.62 Aligned_cols=51 Identities=16% Similarity=0.109 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 029199 63 GGDSQGVEEYYKKMVEENPGN---------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILA 114 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~---------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l 114 (197)
.|++..|++.+.+.+...... ..++.++|.+... .|++++|+..+++++++
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRL 70 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHH
Confidence 478888877777766543221 3455667755555 77777777777777765
No 316
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.99 E-value=1.3 Score=29.65 Aligned_cols=52 Identities=17% Similarity=0.123 Sum_probs=41.8
Q ss_pred cCCHHHHHHHHHHHHHhCC----CC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 029199 98 KQDLPKAEEYYSRAILADP----GD-----GEILSQYAKLVWELHNDQDRAATYYERAVHAS 150 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~l~P----~~-----~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~ 150 (197)
.+++..|++.+.+.+.... .. ..++.++|.+....|. +++|++.++.++++-
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~-~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGH-YEEALQALEEAIRLA 71 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHH
Confidence 6999999888777776532 22 4677889999999885 899999999999885
No 317
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.79 E-value=1.2 Score=33.87 Aligned_cols=100 Identities=9% Similarity=0.110 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHhcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHcCCH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFL-----SNYAQFLYQSKQDLPKAEEYYSRA-ILADPGDGEILSQYAKLVWELHNDQ 136 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~-----~~la~~l~~~~g~~~~A~~~~~~a-l~l~P~~~~~~~~lg~~l~~~~~~~ 136 (197)
.|+...|+..|.++-.-.|- |.+. ..-+.++.. .|-|+.-....+.. -.-+|--..+.-.+|..-++.| ++
T Consensus 107 kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD-~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kag-d~ 183 (221)
T COG4649 107 KGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVD-NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAG-DF 183 (221)
T ss_pred cccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhc-cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhcc-ch
Confidence 47777777777775544332 2221 222323333 66666554444332 1223444456666676666656 47
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199 137 DRAATYYERAVHASPEDSHVHASYAGFLWE 166 (197)
Q Consensus 137 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 166 (197)
.+|..+|.+... +..-|....+++.++..
T Consensus 184 a~A~~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 184 AKAKSWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred HHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 777777776654 55555566666665544
No 318
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.76 E-value=0.17 Score=25.40 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 029199 87 LSNYAQFLYQSKQDLPKAEEYY 108 (197)
Q Consensus 87 ~~~la~~l~~~~g~~~~A~~~~ 108 (197)
++++|..+.. .|++++|+..+
T Consensus 4 ~~~la~~~~~-~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLA-QGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHH-cCCHHHHHHHH
Confidence 3444444444 45555554444
No 319
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.61 E-value=0.26 Score=27.44 Aligned_cols=28 Identities=14% Similarity=0.250 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 029199 86 FLSNYAQFLYQSKQDLPKAEEYYSRAILA 114 (197)
Q Consensus 86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l 114 (197)
++..||.+-.. .++|++|+..|+++|++
T Consensus 3 v~~~Lgeisle-~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLE-NENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHH-hccHHHHHHHHHHHHHH
Confidence 44555655554 56666666666666654
No 320
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=92.48 E-value=0.26 Score=42.27 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccC
Q 029199 124 QYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDA 176 (197)
Q Consensus 124 ~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~ 176 (197)
.+..||..+++ .+-|+.+..+.+-++|.++.-|...+.|+..+.+|.||.+.
T Consensus 233 klv~CYL~~rk-pdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarS 284 (569)
T PF15015_consen 233 KLVTCYLRMRK-PDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARS 284 (569)
T ss_pred HHHHhhhhcCC-CchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666664 67777777777777777777777777777777777776543
No 321
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.43 E-value=0.68 Score=41.74 Aligned_cols=93 Identities=11% Similarity=0.152 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 029199 85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG------EILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHA 158 (197)
Q Consensus 85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~------~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 158 (197)
..|+.-+ -.++ ..+|.-+++.|+..+..-|.|. ....++..||..+.+ .|+|.++++.|=+.+|.++-...
T Consensus 356 iLWn~A~-~~F~-~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~Q-LD~A~E~~~EAE~~d~~~~l~q~ 432 (872)
T KOG4814|consen 356 LLWNTAK-KLFK-MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQ-LDNAVEVYQEAEEVDRQSPLCQL 432 (872)
T ss_pred HHHHhhH-HHHH-HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhhccccHHHHH
Confidence 3455433 6676 7899999999999999887654 356677889999885 99999999999999999999988
Q ss_pred HHHHHHHHcCCccccccCCCcc
Q 029199 159 SYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 159 ~la~~~~~~g~~~ea~~~~~~~ 180 (197)
..-.+....|.-++|....+++
T Consensus 433 ~~~~~~~~E~~Se~AL~~~~~~ 454 (872)
T KOG4814|consen 433 LMLQSFLAEDKSEEALTCLQKI 454 (872)
T ss_pred HHHHHHHHhcchHHHHHHHHHH
Confidence 8888888888888887666554
No 322
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=92.40 E-value=0.96 Score=38.27 Aligned_cols=90 Identities=12% Similarity=0.122 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHcCC-
Q 029199 63 GGDSQGVEEYYKKMVEENPG-NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADP-----GDGEILSQYAKLVWELHND- 135 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P-----~~~~~~~~lg~~l~~~~~~- 135 (197)
+|-+..|.+..+-.+.+||. |+-.....-..+..+.++++-=++.++....... .-|...+..+.+++.++++
T Consensus 116 RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~ 195 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEE 195 (360)
T ss_pred cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCcc
Confidence 69999999999999999999 8776555554555557888888888877665322 1346778888888888863
Q ss_pred -------------HHHHHHHHHHHHHhCCC
Q 029199 136 -------------QDRAATYYERAVHASPE 152 (197)
Q Consensus 136 -------------~~~A~~~~~~al~~~p~ 152 (197)
.++|.+.+.+|+...|.
T Consensus 196 ~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 196 SSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred ccccccccccccchhHHHHHHHHHHHHhHH
Confidence 17999999999998874
No 323
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.38 E-value=1.5 Score=33.17 Aligned_cols=95 Identities=15% Similarity=0.044 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH--
Q 029199 84 PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD---GEILSQYAKLVWELHNDQDRAATYYERAVHAS--PEDSHV-- 156 (197)
Q Consensus 84 ~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~--p~~~~~-- 156 (197)
..++..+|..+.. .|+.++|+++|.++....... .+++.++-.+.+..+ ++.....++.++-.+- +.++..
T Consensus 36 r~~~~~l~~~~~~-~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~-d~~~v~~~i~ka~~~~~~~~d~~~~n 113 (177)
T PF10602_consen 36 RMALEDLADHYCK-IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFG-DWSHVEKYIEKAESLIEKGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhccchHHHHH
Confidence 3577899988887 999999999999987754322 245556666666667 5999999999987663 333332
Q ss_pred --HHHHHHHHHHcCCccccccCCCcc
Q 029199 157 --HASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 157 --~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
...-|..+...++|.+|...|-..
T Consensus 114 rlk~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 114 RLKVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHcc
Confidence 234566677789999987666654
No 324
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.83 E-value=2 Score=38.87 Aligned_cols=87 Identities=11% Similarity=0.036 Sum_probs=69.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 029199 62 SGGDSQGVEEYYKKMVEENPGN------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHND 135 (197)
Q Consensus 62 ~~g~~~~A~~~~~~al~~~P~~------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~ 135 (197)
...+|..+++.|...++.-|.| .....++..+|.. ..+.++|.+.++.|-+.+|.++.-....-.....-+.
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~-L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~- 443 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK-LEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK- 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc-
Confidence 3489999999999999988776 3455677866666 9999999999999999999999887777655555454
Q ss_pred HHHHHHHHHHHHHhC
Q 029199 136 QDRAATYYERAVHAS 150 (197)
Q Consensus 136 ~~~A~~~~~~al~~~ 150 (197)
-++|+.++.+.....
T Consensus 444 Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 444 SEEALTCLQKIKSSE 458 (872)
T ss_pred hHHHHHHHHHHHhhh
Confidence 789999988876553
No 325
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=91.60 E-value=0.39 Score=44.58 Aligned_cols=102 Identities=20% Similarity=0.208 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199 63 GGDSQGVEEYYKKM----------VEENPG----------NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEIL 122 (197)
Q Consensus 63 ~g~~~~A~~~~~~a----------l~~~P~----------~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~ 122 (197)
.+|.+.|+++|+++ |..+|. ++..|.-.|..+-. .|+.+.|+..|..|-. |
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES-~GemdaAl~~Y~~A~D--------~ 941 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLES-VGEMDAALSFYSSAKD--------Y 941 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhc-ccchHHHHHHHHHhhh--------h
Confidence 58889999999876 333443 34445555644443 7888888888877653 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 123 SQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 123 ~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
+.+-.+.+-+|+ .++|...-+ ...|-.+.|.+|..|...|+..+|+..|-+
T Consensus 942 fs~VrI~C~qGk-~~kAa~iA~-----esgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 942 FSMVRIKCIQGK-TDKAARIAE-----ESGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred hhheeeEeeccC-chHHHHHHH-----hcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 444444444454 566654333 356677778888888888888887666655
No 326
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.46 E-value=0.26 Score=24.71 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Q 029199 120 EILSQYAKLVWELHNDQDRAATYYE 144 (197)
Q Consensus 120 ~~~~~lg~~l~~~~~~~~~A~~~~~ 144 (197)
.+.+++|.++...| ++++|...++
T Consensus 2 ~a~~~la~~~~~~G-~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQG-DPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHh
Confidence 34566666666655 3666666654
No 327
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=91.33 E-value=1.6 Score=34.19 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Q 029199 66 SQGVEEYYKKMVEENPG------NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD-GEILSQYAKLV 129 (197)
Q Consensus 66 ~~~A~~~~~~al~~~P~------~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~lg~~l 129 (197)
+..|++.|++++..... ...+.+.+|.+.++ .|++++|..+|.+++..--.+ +..+.+++.=+
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rr-lg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~ 210 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRR-LGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQ 210 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 45677777777765533 24577778866666 999999999999999743222 23555555433
No 328
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=91.06 E-value=0.24 Score=41.36 Aligned_cols=110 Identities=13% Similarity=0.039 Sum_probs=84.7
Q ss_pred cCCCCCHHHHHHHHHHHHHhCC-----------C--------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 029199 60 AGSGGDSQGVEEYYKKMVEENP-----------G--------NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGE 120 (197)
Q Consensus 60 ~~~~g~~~~A~~~~~~al~~~P-----------~--------~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~ 120 (197)
....++++.|..-|.++++.-- + -.....+++.+-.. .+.+..|+..-..+++.++....
T Consensus 232 ~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk-~~~~~~a~~~~~~~~~~~~s~tk 310 (372)
T KOG0546|consen 232 EFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLK-VKGRGGARFRTNEALRDERSKTK 310 (372)
T ss_pred hhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhccc-ccCCCcceeccccccccChhhCc
Confidence 4445888899888888875321 1 11234456655555 78888999888888889999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcc
Q 029199 121 ILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDN 171 (197)
Q Consensus 121 ~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 171 (197)
++|..+..+..+.+ +++|++.++.+....|++..+...+..+-....++.
T Consensus 311 a~~Rr~~~~~~~~~-~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~ 360 (372)
T KOG0546|consen 311 AHYRRGQAYKLLKN-YDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYN 360 (372)
T ss_pred HHHHHHhHHHhhhc-hhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHH
Confidence 99999999999885 999999999999999999988777766655554443
No 329
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=90.91 E-value=2.9 Score=37.13 Aligned_cols=113 Identities=17% Similarity=0.262 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHH
Q 029199 66 SQGVEEYYKKMVEENPGNPL-FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG-EILSQYAKLVWELHNDQDRAATYY 143 (197)
Q Consensus 66 ~~~A~~~~~~al~~~P~~~~-~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~-~~~~~lg~~l~~~~~~~~~A~~~~ 143 (197)
.+.-...|++++.+.-.+++ +|.++-++..+ ..=.+.|+..|.+|=+ ++..+ .++..-|.+-+...+|.+-|...|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR-~eGlkaaR~iF~kaR~-~~r~~hhVfVa~A~mEy~cskD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRR-AEGLKAARKIFKKARE-DKRTRHHVFVAAALMEYYCSKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHH-hhhHHHHHHHHHHHhh-ccCCcchhhHHHHHHHHHhcCChhHHHHHH
Confidence 44455566666655433332 44555555555 5556677777777744 44333 455555555555555677888888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 144 ERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 144 ~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+-.|+..++.|..-..+...+..+++...+...|+++
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~ 461 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERV 461 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 8888888888888888888888888877777777775
No 330
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=90.76 E-value=6.9 Score=33.12 Aligned_cols=95 Identities=16% Similarity=0.239 Sum_probs=64.4
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------------C------------CCCHH---HHHHH
Q 029199 75 KMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA--------------D------------PGDGE---ILSQY 125 (197)
Q Consensus 75 ~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l--------------~------------P~~~~---~~~~l 125 (197)
..++.+|-+.+.+..++.++.. +|+.+.|.+.+++||=. + |.|-. +.+.+
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~-~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~ 109 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQ-QGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRY 109 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHH
Confidence 4467889999999999977776 99999999988888532 1 11222 23333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH-HHcCCcc
Q 029199 126 AKLVWELHNDQDRAATYYERAVHASPE-DSHVHASYAGFL-WETEEDN 171 (197)
Q Consensus 126 g~~l~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~-~~~g~~~ 171 (197)
...+.+.| -+..|.++.+-.+.+||. ||.........| .+.++++
T Consensus 110 i~~L~~RG-~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~ 156 (360)
T PF04910_consen 110 IQSLGRRG-CWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQ 156 (360)
T ss_pred HHHHHhcC-cHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHH
Confidence 44555545 588999999999999998 776544444443 3344444
No 331
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.44 E-value=3.5 Score=26.94 Aligned_cols=54 Identities=9% Similarity=0.066 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH---HHHHHcCCHHHHHHHHHH
Q 029199 90 YAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAK---LVWELHNDQDRAATYYER 145 (197)
Q Consensus 90 la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~---~l~~~~~~~~~A~~~~~~ 145 (197)
-|.-+|. ..+.++|+..++++|+..++.+.-+..+|. ++...|+ +.+.+++--+
T Consensus 12 ~GlkLY~-~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gk-yr~~L~fA~~ 68 (80)
T PF10579_consen 12 KGLKLYH-QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGK-YREMLAFALQ 68 (80)
T ss_pred HHHHHhc-cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3444555 788888888888888888888776666664 4555554 5555554333
No 332
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=90.42 E-value=1.5 Score=31.18 Aligned_cols=81 Identities=12% Similarity=0.024 Sum_probs=60.0
Q ss_pred cCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHH--
Q 029199 98 KQDLPKAEEYYSRAILADPG------------DGEILSQYAKLVWELHNDQDRAATYYERAVH-------ASPEDSHV-- 156 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~l~P~------------~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~-------~~p~~~~~-- 156 (197)
.|-|++|...+++|+...-. |...+-.++.++..+|+ |++++..-+++|. ++.+....
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgr-y~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGR-YDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 58999999999999987422 33456667788899996 8988887777775 34444444
Q ss_pred --HHHHHHHHHHcCCccccccCCCc
Q 029199 157 --HASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 157 --~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
.++.+..+..+|+.+||...|+.
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHH
Confidence 47889999999999999888765
No 333
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=90.40 E-value=3.5 Score=36.84 Aligned_cols=114 Identities=15% Similarity=0.214 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 029199 65 DSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYE 144 (197)
Q Consensus 65 ~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~ 144 (197)
+.+.+...|...|...|..-..|..+|..=++ .|..+.+...|+++++--|-....|..+-..+....++.+.-...|+
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~k-lg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYK-LGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 34677778888899999999999999966666 99999999999999999999999999998888887777778888899
Q ss_pred HHHHhCCCC---HHHHHHHHHHHHHcCCccccccCCCc
Q 029199 145 RAVHASPED---SHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 145 ~al~~~p~~---~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
+|+.....+ ...|..+-.....+++...-...+++
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeR 176 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYER 176 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHH
Confidence 998876443 34555555555455555544444444
No 334
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.88 E-value=1.7 Score=35.69 Aligned_cols=47 Identities=21% Similarity=0.133 Sum_probs=24.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 029199 98 KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYER 145 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~ 145 (197)
.|.+.+|+++.++++++||-+.+.+..+-.+|..+|. --.+..+|++
T Consensus 292 ~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD-~is~~khyer 338 (361)
T COG3947 292 AGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD-EISAIKHYER 338 (361)
T ss_pred cCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc-chhhhhHHHH
Confidence 5555555555555555555555555555555555452 2344444443
No 335
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=89.73 E-value=3.7 Score=39.12 Aligned_cols=135 Identities=17% Similarity=0.101 Sum_probs=92.6
Q ss_pred HHHHHHHhhhcCcccccCCCCh---hhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHH
Q 029199 9 EVKVMEALWNAGFEQERGTVGQ---EMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPL 85 (197)
Q Consensus 9 ~~~~~~a~~~~~~~~~~~p~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~ 85 (197)
+.-+..|+..|..--+..|+.. |..+..|+.+-.-.... .....+++|+..|++. .-.|.-|-
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~-~~~~~~~~ 553 (932)
T PRK13184 488 EKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQ-------------GDPRDFTQALSEFSYL-HGGVGAPL 553 (932)
T ss_pred hHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhc-------------CChHHHHHHHHHHHHh-cCCCCCch
Confidence 4567788888888878888764 67788888864321100 0013678888888884 45577777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHH
Q 029199 86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHN----DQDRAATYYERAVHASPEDSHVHA 158 (197)
Q Consensus 86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~----~~~~A~~~~~~al~~~p~~~~~~~ 158 (197)
-|..-|.+|. ++|++++-+++|.-|++..|+.|.+-...-.+.+.+.. +-..|....--++.+-|.....-.
T Consensus 554 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (932)
T PRK13184 554 EYLGKALVYQ-RLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSRE 629 (932)
T ss_pred HHHhHHHHHH-HhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchH
Confidence 7888885544 49999999999999999999999765443333222211 124677888888888888665433
No 336
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=89.71 E-value=2.8 Score=32.23 Aligned_cols=97 Identities=21% Similarity=0.247 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQS----KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHN----- 134 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~----- 134 (197)
.++++|.+.|..-...+ ..+..-+.+|..++.- .++...|++.|+.+-. -+++.+-.++|.+++. |.
T Consensus 49 knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~-g~~~r~~ 124 (248)
T KOG4014|consen 49 KNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWN-GEKDRKA 124 (248)
T ss_pred HHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhcc-CcCCccC
Confidence 66777777776654443 3566667788443321 1278999999999875 5688999999987765 32
Q ss_pred --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199 135 --DQDRAATYYERAVHASPEDSHVHASYAGFLWE 166 (197)
Q Consensus 135 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 166 (197)
+.++|++++.++..+ ++..+.++|.-.+..
T Consensus 125 dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~ 156 (248)
T KOG4014|consen 125 DPDSEKAERYMTRACDL--EDGEACFLLSTMYMG 156 (248)
T ss_pred CCCcHHHHHHHHHhccC--CCchHHHHHHHHHhc
Confidence 367999999998765 467777777776644
No 337
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=89.17 E-value=3.6 Score=39.20 Aligned_cols=96 Identities=13% Similarity=0.038 Sum_probs=73.9
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhc---C---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 029199 59 PAGSGGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSK---Q---DLPKAEEYYSRAILADPGDGEILSQYAKLV 129 (197)
Q Consensus 59 ~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~---g---~~~~A~~~~~~al~l~P~~~~~~~~lg~~l 129 (197)
.+...+.|+.|+..|++...-.|.- -++.+..|..+..+. | .+.+|+.-|++.. -.|.-|-=+...|.+|
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 562 (932)
T PRK13184 484 AFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALVY 562 (932)
T ss_pred HHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHH
Confidence 4445588999999999988888875 446777775555422 2 4677777777754 3677787788888899
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 029199 130 WELHNDQDRAATYYERAVHASPEDSHV 156 (197)
Q Consensus 130 ~~~~~~~~~A~~~~~~al~~~p~~~~~ 156 (197)
..++ ++++-+++|.-|++..|.+|.+
T Consensus 563 ~~~~-~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 563 QRLG-EYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHhh-hHHHHHHHHHHHHHhcCCCCcc
Confidence 9988 5999999999999999988865
No 338
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=88.75 E-value=1.5 Score=36.85 Aligned_cols=102 Identities=13% Similarity=0.033 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYY 143 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~ 143 (197)
.+..+-++.-..++++||..+.++..|+.- ...-..+|++.+++||+.- +..++........+. ..+|
T Consensus 198 Rnp~~RI~~A~~ALeIN~eCA~AyvLLAEE---Ea~Ti~~AE~l~k~ALka~----e~~yr~sqq~qh~~~-~~da---- 265 (556)
T KOG3807|consen 198 RNPPARIKAAYQALEINNECATAYVLLAEE---EATTIVDAERLFKQALKAG----ETIYRQSQQCQHQSP-QHEA---- 265 (556)
T ss_pred cCcHHHHHHHHHHHhcCchhhhHHHhhhhh---hhhhHHHHHHHHHHHHHHH----HHHHhhHHHHhhhcc-chhh----
Confidence 445556777888999999999999887732 2345788888998888742 222222222222121 1111
Q ss_pred HHHHHhCCCCHHH--HHHHHHHHHHcCCccccccCCCcc
Q 029199 144 ERAVHASPEDSHV--HASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 144 ~~al~~~p~~~~~--~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
......|..+ -..+++|-.++|+..||.+.++.+
T Consensus 266 ---~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL 301 (556)
T KOG3807|consen 266 ---QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDL 301 (556)
T ss_pred ---hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 1112223322 345666666677776666555543
No 339
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.93 E-value=6.4 Score=35.65 Aligned_cols=113 Identities=12% Similarity=0.115 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHH-hCCC---CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHH----HHHHHHHHHHHcCC
Q 029199 66 SQGVEEYYKKMVE-ENPG---NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADP--GDGEI----LSQYAKLVWELHND 135 (197)
Q Consensus 66 ~~~A~~~~~~al~-~~P~---~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P--~~~~~----~~~lg~~l~~~~~~ 135 (197)
...|++|++-+++ ..+. .+.+++.+|.+++..+.+++.|+.+++|++.+.. +-.+. .+.++.++.+.+.
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~- 115 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNP- 115 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCH-
Confidence 3567888888885 2222 2457889999999889999999999999988764 33332 3345677777553
Q ss_pred HHHHHHHHHHHHHhCCC----CHHHHHHHHHH--HHHcCCccccccCCCcc
Q 029199 136 QDRAATYYERAVHASPE----DSHVHASYAGF--LWETEEDNDECDAPSEL 180 (197)
Q Consensus 136 ~~~A~~~~~~al~~~p~----~~~~~~~la~~--~~~~g~~~ea~~~~~~~ 180 (197)
..|...+++.++..-+ .+...+.+-.+ ....+++..|++.++.+
T Consensus 116 -~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~ 165 (608)
T PF10345_consen 116 -KAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSI 165 (608)
T ss_pred -HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4599999999887544 23333333322 22236777777777765
No 340
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=87.85 E-value=11 Score=29.13 Aligned_cols=99 Identities=17% Similarity=0.135 Sum_probs=71.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc----C--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSK----Q--DLPKAEEYYSRAILADPGDGEILSQYAKLVWEL---- 132 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~----g--~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~---- 132 (197)
.+++..|+++|..+.. -+++.+-.++|.++.... + +..+|++++.++-.++ +.++-+++...+..-
T Consensus 86 ~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~ 161 (248)
T KOG4014|consen 86 DASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKF 161 (248)
T ss_pred ccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhh
Confidence 4789999999998876 567888888885554311 1 4789999999998664 666666666554431
Q ss_pred -------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 029199 133 -------------------HNDQDRAATYYERAVHASPEDSHVHASYAGFLWET 167 (197)
Q Consensus 133 -------------------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 167 (197)
.+|.++|.++--+|.+++ ++.+.-|+...|..-
T Consensus 162 ~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklG 213 (248)
T KOG4014|consen 162 KTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLG 213 (248)
T ss_pred cccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHcc
Confidence 136788888888887664 678888888887654
No 341
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.75 E-value=2.5 Score=34.51 Aligned_cols=51 Identities=14% Similarity=0.119 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA 114 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l 114 (197)
.|+++.++..+++.+..+|-+..+|..+-..++. .|+...|+..|++.-++
T Consensus 166 ~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~-~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 166 CGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV-NGRQSAAIRAYRQLKKT 216 (280)
T ss_pred cccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCCchHHHHHHHHHHHH
Confidence 4899999999999999999999999998878887 99999999999998775
No 342
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.18 E-value=1.7 Score=28.42 Aligned_cols=52 Identities=6% Similarity=0.031 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHHHcCCcccccc
Q 029199 123 SQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYA---GFLWETEEDNDECD 175 (197)
Q Consensus 123 ~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la---~~~~~~g~~~ea~~ 175 (197)
...|.-++... +.++|+..++++|+..++.+.-+..+| .++...|++.+.++
T Consensus 10 ie~GlkLY~~~-~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 10 IEKGLKLYHQN-ETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHhccc-hHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567756 489999999999999988777665555 56788899988653
No 343
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=86.78 E-value=4.7 Score=29.41 Aligned_cols=50 Identities=22% Similarity=0.130 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 029199 84 PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHN 134 (197)
Q Consensus 84 ~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~ 134 (197)
.+.....+.-.+. .|++.-|.++.+.++..+|+|..+....+.+|.+++.
T Consensus 70 ~d~vl~~A~~~~~-~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALA-AGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHH-CT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3445556656666 8999999999999999999999999998888887763
No 344
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=86.63 E-value=1.7 Score=24.16 Aligned_cols=30 Identities=20% Similarity=0.343 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 029199 120 EILSQYAKLVWELHNDQDRAATYYERAVHAS 150 (197)
Q Consensus 120 ~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~ 150 (197)
+++..+|.+-...++ |++|++-|+++|.+.
T Consensus 2 dv~~~Lgeisle~e~-f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENEN-FEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhcc-HHHHHHHHHHHHHHH
Confidence 467788988888774 999999999999874
No 345
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=86.61 E-value=6.4 Score=29.86 Aligned_cols=45 Identities=24% Similarity=0.362 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 029199 105 EEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASP 151 (197)
Q Consensus 105 ~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p 151 (197)
++..++.++..| ++.++.+++.++...|+ .++|.+..+++..+.|
T Consensus 131 ~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~-~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 131 IEWAERLLRRRP-DPNVYQRYALALALLGD-PEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCC
Confidence 444455555555 55555666666666553 5666666666666666
No 346
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.63 E-value=10 Score=29.04 Aligned_cols=121 Identities=10% Similarity=0.025 Sum_probs=85.3
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHH
Q 029199 59 PAGSGGDSQGVEEYYKKMVEENPGNPL--FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGE-----ILSQYAKLVWE 131 (197)
Q Consensus 59 ~~~~~g~~~~A~~~~~~al~~~P~~~~--~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~-----~~~~lg~~l~~ 131 (197)
.+.+.+..++|+..|..+-+-.-..-. +....+.+... .|+...|+..|..+-.-.| .|. +...-+.++..
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~-kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQ-KGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh-cccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhc
Confidence 345568889999999887666544433 34455656555 9999999999999876443 343 34445667777
Q ss_pred HcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCccccccCCCcccc
Q 029199 132 LHNDQDRAATYYERAV-HASPEDSHVHASYAGFLWETEEDNDECDAPSELDS 182 (197)
Q Consensus 132 ~~~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~~ 182 (197)
.|- |++-....+..- ..+|-...+.-.||..-++.|++.+|...|..+..
T Consensus 145 ~gs-y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGS-YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccc-HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 664 877666665542 33455566778899999999999999999988743
No 347
>PF12854 PPR_1: PPR repeat
Probab=84.56 E-value=0.62 Score=24.99 Aligned_cols=26 Identities=4% Similarity=-0.081 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHcCCccccccCCCc
Q 029199 154 SHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 154 ~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
...|..+...+.+.|+.++|.+.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 44455555555555555555555443
No 348
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.47 E-value=3.4 Score=32.70 Aligned_cols=58 Identities=19% Similarity=0.073 Sum_probs=49.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 029199 62 SGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGE 120 (197)
Q Consensus 62 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~ 120 (197)
+.+...++++..+.-++.+|.+.....-|-.++.. .|++++|...++-+-++.|++..
T Consensus 13 ~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcv-aGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 13 DDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCV-AGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HhccHHHHHHHHHHHHhcCCccccchhHHHHHHhh-cchHHHHHHHHHHHhhcCcccch
Confidence 34788999999999999999998887777767666 89999999999999999997753
No 349
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=84.27 E-value=4.2 Score=21.03 Aligned_cols=26 Identities=12% Similarity=0.164 Sum_probs=13.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH
Q 029199 140 ATYYERAVHASPEDSHVHASYAGFLW 165 (197)
Q Consensus 140 ~~~~~~al~~~p~~~~~~~~la~~~~ 165 (197)
+++...++..+|.|..+|..+-.++.
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHH
Confidence 34444555555555555555544443
No 350
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.99 E-value=1.8 Score=35.59 Aligned_cols=52 Identities=13% Similarity=0.008 Sum_probs=45.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 029199 60 AGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAI 112 (197)
Q Consensus 60 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al 112 (197)
|...|.+.+|++..+++++++|-+...+..+-.++.. .|+--.+...|++--
T Consensus 289 yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~-~gD~is~~khyerya 340 (361)
T COG3947 289 YLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLAT-LGDEISAIKHYERYA 340 (361)
T ss_pred HHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-hccchhhhhHHHHHH
Confidence 3446999999999999999999999999999888887 999888888887643
No 351
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=83.73 E-value=9.1 Score=30.96 Aligned_cols=76 Identities=18% Similarity=0.125 Sum_probs=55.2
Q ss_pred cCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC---CC-------HH
Q 029199 98 KQDLPKAEEYYSRAILAD-PGDG-------EILSQYAKLVWELHNDQDRAATYYERAVHA----SP---ED-------SH 155 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~l~-P~~~-------~~~~~lg~~l~~~~~~~~~A~~~~~~al~~----~p---~~-------~~ 155 (197)
.|+++.|..++.|+-.+. ..+| ...++.|.-++..+.+++.|..++++++++ .+ .. ..
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~ 85 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS 85 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence 799999999999988765 4444 346666766667551489999999999988 21 11 23
Q ss_pred HHHHHHHHHHHcCCcccc
Q 029199 156 VHASYAGFLWETEEDNDE 173 (197)
Q Consensus 156 ~~~~la~~~~~~g~~~ea 173 (197)
++..++.++...+.++..
T Consensus 86 iL~~La~~~l~~~~~~~~ 103 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESV 103 (278)
T ss_pred HHHHHHHHHHcCCChHHH
Confidence 567888888888876654
No 352
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.50 E-value=5.9 Score=35.00 Aligned_cols=108 Identities=13% Similarity=0.075 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD-PGDGEILSQYAKLVWELHNDQDRAAT 141 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~l~~~~~~~~~A~~ 141 (197)
.|+.-.|-+-...+++..|.+|......+ .++...|+|+.+.+.+.-+-..- ..+......+ .-++.+++ +++|..
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~-~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~-r~~~~l~r-~~~a~s 378 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRS-VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRL-RSLHGLAR-WREALS 378 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHH-HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHH-Hhhhchhh-HHHHHH
Confidence 38888888889999999999998777777 44445999999988875554433 3333333333 45677787 888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcccc
Q 029199 142 YYERAVHASPEDSHVHASYAGFLWETEEDNDE 173 (197)
Q Consensus 142 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea 173 (197)
.-+-.|...=+++++..--+..-..+|=+|++
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHH
Confidence 88877766666666554444444444444444
No 353
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=83.43 E-value=20 Score=29.23 Aligned_cols=110 Identities=10% Similarity=-0.031 Sum_probs=72.0
Q ss_pred CCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH---HHHhcCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-
Q 029199 63 GGDSQGVEEYYKKMVEENPG--NPLFLSNYAQF---LYQSKQDL---PKAEEYYSRAILADPGDGEILSQYAKLVWELH- 133 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~--~~~~~~~la~~---l~~~~g~~---~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~- 133 (197)
.++|++-.+.|.+..+...+ ..+..+..+.. ++...... ..-.+.++..++..|++..++..+|..+....
T Consensus 13 ~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw 92 (277)
T PF13226_consen 13 ARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYWVHRAW 92 (277)
T ss_pred hCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 47888888888877654332 11111111111 11201111 24677888999999999999998886643211
Q ss_pred --------------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccc
Q 029199 134 --------------------NDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDND 172 (197)
Q Consensus 134 --------------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 172 (197)
.-.++|..++.+|++++|....+...+-.+-...|+.+=
T Consensus 93 ~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~W 151 (277)
T PF13226_consen 93 DIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPDW 151 (277)
T ss_pred HHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCchH
Confidence 125789999999999999999998888877777776654
No 354
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.35 E-value=17 Score=27.37 Aligned_cols=86 Identities=16% Similarity=0.045 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHH----HHHHHHHHHc
Q 029199 63 GGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD--PGDGEILS----QYAKLVWELH 133 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~--P~~~~~~~----~lg~~l~~~~ 133 (197)
.|++++|+++|.++....... ...++++-.+... .+++.....+..++-.+- +.+.+... .-|..+...+
T Consensus 49 ~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r 127 (177)
T PF10602_consen 49 IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-FGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQR 127 (177)
T ss_pred hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhc
Confidence 499999999999987765443 3355566666666 899999999998887653 33343332 2354555545
Q ss_pred CCHHHHHHHHHHHHHhC
Q 029199 134 NDQDRAATYYERAVHAS 150 (197)
Q Consensus 134 ~~~~~A~~~~~~al~~~ 150 (197)
+|.+|.+.|-.++.-.
T Consensus 128 -~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 128 -DFKEAAELFLDSLSTF 143 (177)
T ss_pred -hHHHHHHHHHccCcCC
Confidence 6999999988775443
No 355
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=82.66 E-value=4.8 Score=37.07 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=23.8
Q ss_pred hCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 149 ASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 149 ~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.-|++...+-.+|..+...|--++|++.|-+.
T Consensus 847 ~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 847 TLPEDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred hcCcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 34777888888888888888888887666553
No 356
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=82.30 E-value=7.9 Score=29.36 Aligned_cols=47 Identities=23% Similarity=0.350 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 029199 68 GVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADP 116 (197)
Q Consensus 68 ~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P 116 (197)
..++..++.++..| ++.++.+++.++.. .|+.++|.+..+++..+.|
T Consensus 129 ~~~~~a~~~l~~~P-~~~~~~~~a~~l~~-~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 129 AYIEWAERLLRRRP-DPNVYQRYALALAL-LGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCC
Confidence 33344444444444 34444444433333 5555555555555555555
No 357
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=81.76 E-value=35 Score=32.10 Aligned_cols=104 Identities=11% Similarity=0.069 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HHcCCHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVW--ELHNDQDRAAT 141 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~--~~~~~~~~A~~ 141 (197)
+..+.-+.-++.-+.+++.+...+..|-.+++. .|++++-...-.++-++.|..+.+|.+...-.. ....+-.+..+
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk-~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~ 171 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRK-LGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEE 171 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHH-hcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHH
Confidence 556667788888888999888888888878887 999999999989999999999999988765333 22334678888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 029199 142 YYERAVHASPEDSHVHASYAGFLWETEE 169 (197)
Q Consensus 142 ~~~~al~~~p~~~~~~~~la~~~~~~g~ 169 (197)
.|++++- +-+.+.+|..++..+...+.
T Consensus 172 ~~ekal~-dy~~v~iw~e~~~y~~~~~~ 198 (881)
T KOG0128|consen 172 LFEKALG-DYNSVPIWEEVVNYLVGFGN 198 (881)
T ss_pred HHHHHhc-ccccchHHHHHHHHHHhccc
Confidence 9999985 55667788888888777665
No 358
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=81.33 E-value=4.3 Score=21.66 Aligned_cols=26 Identities=42% Similarity=0.524 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199 136 QDRAATYYERAVHASPEDSHVHASYAG 162 (197)
Q Consensus 136 ~~~A~~~~~~al~~~p~~~~~~~~la~ 162 (197)
++.|...|++.+...|+ +..|..+|.
T Consensus 3 ~dRAR~IyeR~v~~hp~-~k~WikyAk 28 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE-VKNWIKYAK 28 (32)
T ss_pred HHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 56777777777777654 566666554
No 359
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=81.30 E-value=8.4 Score=30.56 Aligned_cols=47 Identities=32% Similarity=0.423 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029199 67 QGVEEYYKKMVE-----ENPGNPL---FLSNYAQFLYQSKQDLPKAEEYYSRAIL 113 (197)
Q Consensus 67 ~~A~~~~~~al~-----~~P~~~~---~~~~la~~l~~~~g~~~~A~~~~~~al~ 113 (197)
+.|.++|++|+. +.|.+|. ...|++.++|...|+.++|++..++|+.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 456666666654 3455544 3345566666666666666666666553
No 360
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.25 E-value=13 Score=29.45 Aligned_cols=69 Identities=19% Similarity=0.132 Sum_probs=57.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHH
Q 029199 93 FLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSH---VHASYAGF 163 (197)
Q Consensus 93 ~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~ 163 (197)
-+.+ .+...+++...+.-++-.|.+......+-.+|.-.| ++++|...++-+-++.|++.. .|.++..|
T Consensus 10 eLL~-~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaG-dw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 10 ELLD-DNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAG-DWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHH-hccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcc-hHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4445 689999999999999999999999999988888877 699999999999999998653 34444444
No 361
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=81.10 E-value=18 Score=30.49 Aligned_cols=168 Identities=13% Similarity=-0.022 Sum_probs=71.9
Q ss_pred HHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC-CCCCCCCC-----CcccCCCCCHHHHHHHHHHHHHhC-CC
Q 029199 10 VKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG-GTGGGGSG-----FYPAGSGGDSQGVEEYYKKMVEEN-PG 82 (197)
Q Consensus 10 ~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~-----~~~~~~~g~~~~A~~~~~~al~~~-P~ 82 (197)
+=+.|||..=......-|..|+++--..+.+-...+... .+.+...+ +-..-+.+-.+++...+.+++... |.
T Consensus 210 ~Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pG 289 (415)
T COG4941 210 DLCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPG 289 (415)
T ss_pred hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 344555555445555567777775554444322211100 00000000 001111245555555555555443 22
Q ss_pred CHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHH
Q 029199 83 NPLFLSNYAQFLYQS----KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHA--SPEDSHV 156 (197)
Q Consensus 83 ~~~~~~~la~~l~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~--~p~~~~~ 156 (197)
--..--.++.+.-.. .-++..=..+|+-...+-| +|.+-.|.++++....+ .+.++...+....- -..+...
T Consensus 290 PYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~G-p~agLa~ve~L~~~~~L~gy~~~ 367 (415)
T COG4941 290 PYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP-SPVVTLNRAVALAMREG-PAAGLAMVEALLARPRLDGYHLY 367 (415)
T ss_pred hHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhh-HHhHHHHHHHhhccccccccccc
Confidence 222222222222110 1244443444443333333 44555555555555554 44555554444432 1233344
Q ss_pred HHHHHHHHHHcCCccccccCCCc
Q 029199 157 HASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 157 ~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
|.-.|.++.++|+.+||...|++
T Consensus 368 h~~RadlL~rLgr~~eAr~aydr 390 (415)
T COG4941 368 HAARADLLARLGRVEEARAAYDR 390 (415)
T ss_pred HHHHHHHHHHhCChHHHHHHHHH
Confidence 55555566666666665555555
No 362
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=81.06 E-value=4.7 Score=29.39 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccc
Q 029199 119 GEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDND 172 (197)
Q Consensus 119 ~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 172 (197)
.+.....+.-.+..| ++.-|.+..+.++..+|+|..+..-.+.++.++|...+
T Consensus 70 ~d~vl~~A~~~~~~g-d~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 70 ADKVLERAQAALAAG-DYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHHCT--HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 344455555666646 69999999999999999999999999999999886655
No 363
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.06 E-value=3.7 Score=23.56 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=16.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199 123 SQYAKLVWELHNDQDRAATYYERAVH 148 (197)
Q Consensus 123 ~~lg~~l~~~~~~~~~A~~~~~~al~ 148 (197)
++++.+|..+| |.+.|.+.++..+.
T Consensus 3 LdLA~ayie~G-d~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMG-DLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcC-ChHHHHHHHHHHHH
Confidence 45666666666 46666666666663
No 364
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=80.40 E-value=10 Score=32.86 Aligned_cols=104 Identities=13% Similarity=0.031 Sum_probs=72.7
Q ss_pred CCCCCHHHHHHHHHHHHHhC--------CCC----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199 61 GSGGDSQGVEEYYKKMVEEN--------PGN----------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEIL 122 (197)
Q Consensus 61 ~~~g~~~~A~~~~~~al~~~--------P~~----------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~ 122 (197)
...++|..|.--|..+|++- |.. +.+-..+..||.+ +++.+.|+..-.+.+.++|.++--+
T Consensus 187 yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~-~rkpdlALnh~hrsI~lnP~~frnH 265 (569)
T PF15015_consen 187 YRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLR-MRKPDLALNHSHRSINLNPSYFRNH 265 (569)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhh-cCCCchHHHHHhhhhhcCcchhhHH
Confidence 34577888888888887752 221 2233467767776 9999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHH
Q 029199 123 SQYAKLVWELHNDQDRAATYYERAV---HASPEDSHVHASYAGFLWE 166 (197)
Q Consensus 123 ~~lg~~l~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~ 166 (197)
...+.+...+.+ |.+|..-+.-+. .++..+..-...+...|+.
T Consensus 266 LrqAavfR~LeR-y~eAarSamia~ymywl~g~~~q~~S~lIklyWq 311 (569)
T PF15015_consen 266 LRQAAVFRRLER-YSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQ 311 (569)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHH
Confidence 999999999998 778876655543 3344333333444444443
No 365
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=79.88 E-value=19 Score=25.50 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYS 109 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~ 109 (197)
.+.....+.+++.++..++.++..++.+..++.+ -+..+.++.++
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~--~~~~~ll~~l~ 64 (140)
T smart00299 20 RNLLEELIPYLESALKLNSENPALQTKLIELYAK--YDPQKEIERLD 64 (140)
T ss_pred CCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH--HCHHHHHHHHH
Confidence 4788999999999999999888888888855443 46666777766
No 366
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.00 E-value=5.4 Score=22.87 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029199 88 SNYAQFLYQSKQDLPKAEEYYSRAIL 113 (197)
Q Consensus 88 ~~la~~l~~~~g~~~~A~~~~~~al~ 113 (197)
++|+..|.. +|+.+.|+..++.++.
T Consensus 3 LdLA~ayie-~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIE-MGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHH-cCChHHHHHHHHHHHH
Confidence 568878887 9999999999999995
No 367
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=78.90 E-value=11 Score=30.13 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=11.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 029199 89 NYAQFLYQSKQDLPKAEEYYSRAI 112 (197)
Q Consensus 89 ~la~~l~~~~g~~~~A~~~~~~al 112 (197)
|++.++|..+++.++|.+..++|+
T Consensus 175 N~SVF~yEI~~~~~~A~~lAk~af 198 (244)
T smart00101 175 NFSVFYYEILNSPDRACNLAKQAF 198 (244)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444455555544444443
No 368
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=78.66 E-value=4.7 Score=21.03 Aligned_cols=14 Identities=36% Similarity=0.762 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHHHH
Q 029199 135 DQDRAATYYERAVH 148 (197)
Q Consensus 135 ~~~~A~~~~~~al~ 148 (197)
|.++|..+|+++.+
T Consensus 20 d~~~A~~~~~~Aa~ 33 (36)
T smart00671 20 DLEKALEYYKKAAE 33 (36)
T ss_pred CHHHHHHHHHHHHH
Confidence 45555555555543
No 369
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=78.25 E-value=12 Score=29.70 Aligned_cols=47 Identities=26% Similarity=0.358 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199 102 PKAEEYYSRAILA-----DPGDGE---ILSQYAKLVWELHNDQDRAATYYERAVH 148 (197)
Q Consensus 102 ~~A~~~~~~al~l-----~P~~~~---~~~~lg~~l~~~~~~~~~A~~~~~~al~ 148 (197)
++|.+.|++|+.+ .|.+|. ...|++++|+..-++.++|.+..++|+.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6788888888764 678874 5678888998877789999888777765
No 370
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=77.84 E-value=20 Score=31.35 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029199 81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAIL 113 (197)
Q Consensus 81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~ 113 (197)
.+++..|..||..... +|+++-|+.+|.++-.
T Consensus 344 ~~~~~~W~~Lg~~AL~-~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALR-QGNIELAEECYQKAKD 375 (443)
T ss_dssp CSTHHHHHHHHHHHHH-TTBHHHHHHHHHHCT-
T ss_pred cCcHHHHHHHHHHHHH-cCCHHHHHHHHHhhcC
Confidence 3467778888877776 7888888888877653
No 371
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=77.83 E-value=26 Score=30.89 Aligned_cols=103 Identities=12% Similarity=0.130 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 029199 66 SQGVEEYYKKMVEENPGNPLFLSNYAQ-FLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYE 144 (197)
Q Consensus 66 ~~~A~~~~~~al~~~P~~~~~~~~la~-~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~ 144 (197)
.+.|.+.|-++-+.--....++..-|. -++. +|++.-|-..|+--+...|+++...+.+-..+...+. -..|...|+
T Consensus 413 l~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ind-e~naraLFe 490 (660)
T COG5107 413 LEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRIND-EENARALFE 490 (660)
T ss_pred HHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCc-HHHHHHHHH
Confidence 455666666665543233333333332 3334 7888888888888888888888888888778888774 578888888
Q ss_pred HHHHhCCCC--HHHHHHHHHHHHHcCCc
Q 029199 145 RAVHASPED--SHVHASYAGFLWETEED 170 (197)
Q Consensus 145 ~al~~~p~~--~~~~~~la~~~~~~g~~ 170 (197)
+++..-... ..+|..+...-..-|+.
T Consensus 491 tsv~r~~~~q~k~iy~kmi~YEs~~G~l 518 (660)
T COG5107 491 TSVERLEKTQLKRIYDKMIEYESMVGSL 518 (660)
T ss_pred HhHHHHHHhhhhHHHHHHHHHHHhhcch
Confidence 777543222 34444444444444544
No 372
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=77.77 E-value=13 Score=29.69 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199 101 LPKAEEYYSRAIL-----ADPGDGE---ILSQYAKLVWELHNDQDRAATYYERAVH 148 (197)
Q Consensus 101 ~~~A~~~~~~al~-----l~P~~~~---~~~~lg~~l~~~~~~~~~A~~~~~~al~ 148 (197)
.++|.+.|+.|++ +.|.+|. ...|++++|+..-++.++|.+..++|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4578999999886 4588875 4678889999987788888876666654
No 373
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=77.57 E-value=25 Score=25.69 Aligned_cols=80 Identities=19% Similarity=0.172 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYY 143 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~ 143 (197)
|+...-+.+|-.. +-.+..+-..|. .+.. +|+.++=.+.+....+.+..+|.++..+|.+|-++|. ..++-+.+
T Consensus 70 ~NlKrVi~C~~~~---n~~se~vD~ALd-~lv~-~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~-~r~~~ell 143 (161)
T PF09205_consen 70 GNLKRVIECYAKR---NKLSEYVDLALD-ILVK-QGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGN-TREANELL 143 (161)
T ss_dssp S-THHHHHHHHHT---T---HHHHHHHH-HHHH-TT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred cchHHHHHHHHHh---cchHHHHHHHHH-HHHH-hccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcc-hhhHHHHH
Confidence 7777777777553 222333333344 4555 7888888888888887778899999999999999884 88999999
Q ss_pred HHHHHh
Q 029199 144 ERAVHA 149 (197)
Q Consensus 144 ~~al~~ 149 (197)
.+|.+.
T Consensus 144 ~~ACek 149 (161)
T PF09205_consen 144 KEACEK 149 (161)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998764
No 374
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.45 E-value=24 Score=31.41 Aligned_cols=72 Identities=14% Similarity=0.097 Sum_probs=54.2
Q ss_pred CCCCHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHh---CC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 029199 80 NPGNPLFL-SNYAQFLYQSKQDLPKAEEYYSRAILA---DP----GDGEILSQYAKLVWELHNDQDRAATYYERAVHASP 151 (197)
Q Consensus 80 ~P~~~~~~-~~la~~l~~~~g~~~~A~~~~~~al~l---~P----~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p 151 (197)
|+++.-.. +.+|.++.. .|+...|..+|...+.. .- --|.++|.+|.+++..++-.+++..++.+|-....
T Consensus 444 d~Dd~~lk~lL~g~~lR~-Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRN-LGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred CchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 45544443 345755555 99999999999998833 22 24688999999999988658999999999987664
Q ss_pred C
Q 029199 152 E 152 (197)
Q Consensus 152 ~ 152 (197)
+
T Consensus 523 d 523 (546)
T KOG3783|consen 523 D 523 (546)
T ss_pred c
Confidence 4
No 375
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=77.41 E-value=39 Score=30.65 Aligned_cols=74 Identities=16% Similarity=0.003 Sum_probs=53.4
Q ss_pred cCCHHHHHHHHHHHHHhC---CC------CHHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHhCCCCHH---HH
Q 029199 98 KQDLPKAEEYYSRAILAD---PG------DGEILSQYAKLVWELHNDQDRAATYYE--------RAVHASPEDSH---VH 157 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~l~---P~------~~~~~~~lg~~l~~~~~~~~~A~~~~~--------~al~~~p~~~~---~~ 157 (197)
.+++.+|....+.+.... |. .+.+++..|..+...| +.+.|+.+|. .+....+.+.- +-
T Consensus 374 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g-~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 374 RGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTG-DLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred CcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcC-CHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 789999999988777653 22 4788899998777766 6999999998 44455554332 34
Q ss_pred HHHHHHHHHcCCccc
Q 029199 158 ASYAGFLWETEEDND 172 (197)
Q Consensus 158 ~~la~~~~~~g~~~e 172 (197)
.|+..++...+...+
T Consensus 453 LNl~~I~~~~~~~~~ 467 (608)
T PF10345_consen 453 LNLAIILQYESSRDD 467 (608)
T ss_pred HHHHHHhHhhcccch
Confidence 678888887776444
No 376
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=77.36 E-value=7.5 Score=20.69 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHH
Q 029199 136 QDRAATYYERAVH 148 (197)
Q Consensus 136 ~~~A~~~~~~al~ 148 (197)
.++|..+|++|.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 4566666666654
No 377
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.35 E-value=56 Score=29.09 Aligned_cols=113 Identities=12% Similarity=0.124 Sum_probs=78.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHH
Q 029199 60 AGSGGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD----------GEILSQYA 126 (197)
Q Consensus 60 ~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~----------~~~~~~lg 126 (197)
+.+-+-++.|...|..|+++-..- +..-.|+|..|.. .++. ...|+-.-.+.|.| ..+++-+|
T Consensus 377 s~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~-~~~~---ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~g 452 (629)
T KOG2300|consen 377 SHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLR-IGDA---EDLYKALDLIGPLNTNSLSSQRLEASILYVYG 452 (629)
T ss_pred hhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHH-hccH---HHHHHHHHhcCCCCCCcchHHHHHHHHHHHHH
Confidence 344589999999999998875432 2344577866655 5554 44454444556653 35677788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------HHHHHHHHHHHcCCccccccCCCc
Q 029199 127 KLVWELHNDQDRAATYYERAVHASPEDSH--------VHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 127 ~~l~~~~~~~~~A~~~~~~al~~~p~~~~--------~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
...+..+ ++.+|...+.+.|+.. |.+ .+.-++.+..-.|+..|+.+-.+.
T Consensus 453 lfaf~qn-~lnEaK~~l~e~Lkma--naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrp 510 (629)
T KOG2300|consen 453 LFAFKQN-DLNEAKRFLRETLKMA--NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRP 510 (629)
T ss_pred HHHHHhc-cHHHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccch
Confidence 8888867 5999999999999876 332 245677888889999988666554
No 378
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=75.71 E-value=34 Score=28.90 Aligned_cols=110 Identities=18% Similarity=0.132 Sum_probs=68.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-------------------------CHHHHHHHHHHHHHhCC-C
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQ-------------------------DLPKAEEYYSRAILADP-G 117 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g-------------------------~~~~A~~~~~~al~l~P-~ 117 (197)
+--++|+..=.-.+.+-|..++++-.++..++.... -.+++...+.+++...- .
T Consensus 210 ~Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pG 289 (415)
T COG4941 210 DLCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPG 289 (415)
T ss_pred hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 445788888888899999999998877744443111 45678888888887753 3
Q ss_pred CHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 029199 118 DGEILSQYAKLVWEL----HNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDEC 174 (197)
Q Consensus 118 ~~~~~~~lg~~l~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~ 174 (197)
-..+.-.++.+.... .-||..=..+|+-...+.|+ |.+-.|.+..+.+.--.+.+.
T Consensus 290 PYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agL 349 (415)
T COG4941 290 PYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGL 349 (415)
T ss_pred hHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHH
Confidence 323333333332221 12575555566666666665 667777777766654444443
No 379
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=75.37 E-value=3.8 Score=34.44 Aligned_cols=67 Identities=12% Similarity=0.049 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWE 131 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~ 131 (197)
+.+..|+..-..+++.+++...+++.++..+.. ..++++|++.++.+....|++..+.-.+...-..
T Consensus 289 ~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~-~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 289 KGRGGARFRTNEALRDERSKTKAHYRRGQAYKL-LKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred cCCCcceeccccccccChhhCcHHHHHHhHHHh-hhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 555556666666667889999999999977776 8999999999999999999999887776655433
No 380
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.32 E-value=27 Score=28.77 Aligned_cols=109 Identities=9% Similarity=0.149 Sum_probs=66.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHHc
Q 029199 64 GDSQGVEEYYKKMVEENPGNPL----FLSNYAQFLYQSKQDLPKAEEYYSRAILAD-----PG-DGEILSQYAKLVWELH 133 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~----~~~~la~~l~~~~g~~~~A~~~~~~al~l~-----P~-~~~~~~~lg~~l~~~~ 133 (197)
.+.++|+..|++.+++.|.-.+ ++...-.+.++ ++++++-...|++.|..- .+ +....+++-.. ....
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~-l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDy-iStS 118 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFR-LGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDY-ISTS 118 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH-Hhhh
Confidence 5789999999999999998765 34445556676 899998888888776531 11 11122222222 2223
Q ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHH----HHHHHHHHcCCccccc
Q 029199 134 NDQDRAATYYERAVHA--SPEDSHVHA----SYAGFLWETEEDNDEC 174 (197)
Q Consensus 134 ~~~~~A~~~~~~al~~--~p~~~~~~~----~la~~~~~~g~~~ea~ 174 (197)
++.+--.+.|+.-|.. +..|...|+ .+|.+++..|++.+-.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~ 165 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQ 165 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHH
Confidence 3455556666665543 344555553 5677776666665543
No 381
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=74.82 E-value=11 Score=30.97 Aligned_cols=97 Identities=9% Similarity=0.078 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------HHHcCCHHH
Q 029199 66 SQGVEEYYKKMVEENPGNPLFLSNYAQFLYQS-KQDLPKAEEYYSRAILADPGDGEILSQYAKLV------WELHNDQDR 138 (197)
Q Consensus 66 ~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~-~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l------~~~~~~~~~ 138 (197)
++.-+..+..+++-+|.+-.+|..+-.++-.. ...+..-...-++.+..||.|.-.|...-.++ .... ++..
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S-~~k~ 168 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFS-DLKH 168 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccch-hHHH
Confidence 35566779999999999999999887554431 25677788888999999999998887776665 2222 3445
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 139 AATYYERAVHASPEDSHVHASYAGF 163 (197)
Q Consensus 139 A~~~~~~al~~~p~~~~~~~~la~~ 163 (197)
-.++=..++..|+.|+.+|.+.-..
T Consensus 169 e~eytt~~I~tdi~N~SaW~~r~~~ 193 (328)
T COG5536 169 ELEYTTSLIETDIYNNSAWHHRYIW 193 (328)
T ss_pred HHHhHHHHHhhCCCChHHHHHHHHH
Confidence 5666667788899999999888433
No 382
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=74.72 E-value=48 Score=29.30 Aligned_cols=93 Identities=15% Similarity=0.200 Sum_probs=69.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 029199 72 YYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASP 151 (197)
Q Consensus 72 ~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p 151 (197)
-+++-++-+|++...|+.|-..+-. ++.+++-++.|++...-.|--+.+|..+-.--...+ |+..-...|.++|...-
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~t-q~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~-df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLET-QESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARK-DFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhh-hhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhh-hHHHHHHHHHHHHhhhc
Confidence 6778899999999999999965555 999999999999999988888888766644333334 68777778888887654
Q ss_pred CCHHHHHHHHHHHHHc
Q 029199 152 EDSHVHASYAGFLWET 167 (197)
Q Consensus 152 ~~~~~~~~la~~~~~~ 167 (197)
+ .+.|..+-..-.+.
T Consensus 108 ~-ldLW~lYl~YIRr~ 122 (660)
T COG5107 108 N-LDLWMLYLEYIRRV 122 (660)
T ss_pred c-HhHHHHHHHHHHhh
Confidence 3 55665544444443
No 383
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=74.37 E-value=18 Score=23.39 Aligned_cols=26 Identities=23% Similarity=0.096 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199 101 LPKAEEYYSRAILADPGDGEILSQYA 126 (197)
Q Consensus 101 ~~~A~~~~~~al~l~P~~~~~~~~lg 126 (197)
|.+|++.+.+++...|+++.-.....
T Consensus 29 Y~~aIe~L~q~~~~~pD~~~k~~yr~ 54 (75)
T cd02682 29 YKKAIEVLSQIVKNYPDSPTRLIYEQ 54 (75)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 34455555555666777776444333
No 384
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=74.15 E-value=34 Score=35.82 Aligned_cols=102 Identities=19% Similarity=0.191 Sum_probs=73.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CC----------C------HHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD-PG----------D------GEILSQY 125 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~-P~----------~------~~~~~~l 125 (197)
.|+++.|-.++-+|.+.. -+.++...|..++. +|+...|+..+++.+.++ |+ . ..+...+
T Consensus 1683 aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~-~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~ 1759 (2382)
T KOG0890|consen 1683 AGHLQRAQNALLNAKESR--LPEIVLERAKLLWQ-TGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKI 1759 (2382)
T ss_pred cccHHHHHHHHHhhhhcc--cchHHHHHHHHHHh-hccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHH
Confidence 599999999998888877 56788888999998 999999999999999665 33 1 1123333
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 029199 126 AKLVWELHN-DQDRAATYYERAVHASPEDSHVHASYAGFLWET 167 (197)
Q Consensus 126 g~~l~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 167 (197)
+...-..++ ..++-+++|..+.++.|.....++.+|..|.+.
T Consensus 1760 ~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kl 1802 (2382)
T KOG0890|consen 1760 TKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKL 1802 (2382)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHH
Confidence 333334443 123457789999999998888888888665543
No 385
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=74.13 E-value=67 Score=30.50 Aligned_cols=104 Identities=13% Similarity=0.045 Sum_probs=73.2
Q ss_pred CCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPG--N-------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG-----EILSQYAKL 128 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~--~-------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~~lg~~ 128 (197)
..++.+|..++.++...-|. . .....-.|.+... .|++++|++..+.++..-|.+. .+....|.+
T Consensus 428 ~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~-~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 428 QHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALN-RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred ccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 58899999998888765544 1 1222223444444 8999999999999999877654 456667777
Q ss_pred HHHHcCCHHHHHHHHHHHHHh----CCCCHHHH--HHHHHHHHHcC
Q 029199 129 VWELHNDQDRAATYYERAVHA----SPEDSHVH--ASYAGFLWETE 168 (197)
Q Consensus 129 l~~~~~~~~~A~~~~~~al~~----~p~~~~~~--~~la~~~~~~g 168 (197)
..-.| ++++|..+...+.+. +-..-.+| ...+.++..+|
T Consensus 507 ~~~~G-~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 507 AHIRG-ELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred HHHhc-hHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 66666 599999999999887 33333444 34477888888
No 386
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=74.11 E-value=10 Score=19.49 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=13.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH
Q 029199 105 EEYYSRAILADPGDGEILSQYAKLV 129 (197)
Q Consensus 105 ~~~~~~al~l~P~~~~~~~~lg~~l 129 (197)
++...+++..+|.|..+|..+-.++
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll 27 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLL 27 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHH
Confidence 3444555555555555555554443
No 387
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=73.39 E-value=61 Score=28.33 Aligned_cols=80 Identities=21% Similarity=0.187 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHhcCCHHHHHHH-------HHHHHHh-----------CCCCHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLF-LSNYAQFLYQSKQDLPKAEEY-------YSRAILA-----------DPGDGEILSQ 124 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~-~~~la~~l~~~~g~~~~A~~~-------~~~al~l-----------~P~~~~~~~~ 124 (197)
|+++++.+..+. -++-|.-+.- ....+.++.. +|..+.|++. |+-||++ ..+++..|-.
T Consensus 275 ~d~~~v~~~i~~-~~ll~~i~~~~~~~i~~fL~~-~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~ 352 (443)
T PF04053_consen 275 GDFEEVLRMIAA-SNLLPNIPKDQGQSIARFLEK-KGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQ 352 (443)
T ss_dssp T-HHH-----HH-HHTGGG--HHHHHHHHHHHHH-TT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHH
T ss_pred CChhhhhhhhhh-hhhcccCChhHHHHHHHHHHH-CCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHH
Confidence 777776555531 2333333333 3334444444 6766555432 2222222 3457778888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 029199 125 YAKLVWELHNDQDRAATYYERA 146 (197)
Q Consensus 125 lg~~l~~~~~~~~~A~~~~~~a 146 (197)
+|......| +++-|.++|.++
T Consensus 353 Lg~~AL~~g-~~~lAe~c~~k~ 373 (443)
T PF04053_consen 353 LGDEALRQG-NIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHTT-BHHHHHHHHHHC
T ss_pred HHHHHHHcC-CHHHHHHHHHhh
Confidence 888777766 478888888775
No 388
>PRK11619 lytic murein transglycosylase; Provisional
Probab=72.93 E-value=44 Score=30.72 Aligned_cols=114 Identities=12% Similarity=0.074 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPL----FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRA 139 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~----~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A 139 (197)
.+.+.|...+.+.....+-+.. ++..+|.-+.. .+..++|...+..+.....++...-..+-.++ ..+ +++..
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~-~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al-~~~-dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMG-NDVTDEQAKWRDDVIMRSQSTSLLERRVRMAL-GTG-DRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh-ccCCHHHHHHHHhcccccCCcHHHHHHHHHHH-Hcc-CHHHH
Confidence 5566677777665444433322 23333322222 11266777777766543333333322232233 435 58777
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 140 ATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 140 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
..++...-....+.+..+|.+|..+..+|+.++|...|+++
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777754444457788899999988899999987777775
No 389
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=72.11 E-value=11 Score=24.37 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=13.8
Q ss_pred cCCHHHHHHHHHHHHHh
Q 029199 98 KQDLPKAEEYYSRAILA 114 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~l 114 (197)
.|++++|+++|..+++.
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 67888888888888875
No 390
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=71.48 E-value=27 Score=24.69 Aligned_cols=76 Identities=7% Similarity=0.064 Sum_probs=53.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH---------HHHhCCCCHHHHHHHHHHHHHcC
Q 029199 98 KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYER---------AVHASPEDSHVHASYAGFLWETE 168 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~---------al~~~p~~~~~~~~la~~~~~~g 168 (197)
.+.....+.+++..+..++.++..+..+..++.+.. ..+.+++++. ++++... ...|-....++.+.|
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~--~~~ll~~l~~~~~~yd~~~~~~~c~~-~~l~~~~~~l~~k~~ 96 (140)
T smart00299 20 RNLLEELIPYLESALKLNSENPALQTKLIELYAKYD--PQKEIERLDNKSNHYDIEKVGKLCEK-AKLYEEAVELYKKDG 96 (140)
T ss_pred CCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC--HHHHHHHHHhccccCCHHHHHHHHHH-cCcHHHHHHHHHhhc
Confidence 578999999999999999999999999998887754 4677777773 2222211 112445566677778
Q ss_pred CccccccC
Q 029199 169 EDNDECDA 176 (197)
Q Consensus 169 ~~~ea~~~ 176 (197)
.+++|.+.
T Consensus 97 ~~~~Al~~ 104 (140)
T smart00299 97 NFKDAIVT 104 (140)
T ss_pred CHHHHHHH
Confidence 87777543
No 391
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=70.61 E-value=11 Score=24.55 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAIL 113 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~ 113 (197)
+.|+.|..+.+++|+.+. .|+.++|+.+|++++.
T Consensus 3 ~~~~~A~~~I~kaL~~dE----------------~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 3 GYYKQAFEEISKALRADE----------------WGDKEQALAHYRKGLR 36 (79)
T ss_pred hHHHHHHHHHHHHhhhhh----------------cCCHHHHHHHHHHHHH
Confidence 446666666666666543 3555555555555554
No 392
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=70.60 E-value=42 Score=26.97 Aligned_cols=64 Identities=17% Similarity=0.204 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 116 PGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS------PEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 116 P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
|.+.+..-++..++......-.+-.+..+++++-. -.+|..|..+|..+.+.|++.+|+..|-.
T Consensus 46 ~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 46 PVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp --SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 44444445555554444322112333333333322 24677888888888888888877766544
No 393
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.52 E-value=58 Score=31.83 Aligned_cols=83 Identities=14% Similarity=0.068 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199 82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYA 161 (197)
Q Consensus 82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 161 (197)
+.+.+|..+|..-.. .|...+|++.|-+| +||..+..--.+-.+.|. |++-+.++.-|-+.-. .+.+-..+.
T Consensus 1102 n~p~vWsqlakAQL~-~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~-~edLv~yL~MaRkk~~-E~~id~eLi 1173 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQ-GGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGK-YEDLVKYLLMARKKVR-EPYIDSELI 1173 (1666)
T ss_pred CChHHHHHHHHHHHh-cCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCc-HHHHHHHHHHHHHhhc-CccchHHHH
Confidence 456777777766665 77777777777665 345555555555556564 7777776666654322 233334444
Q ss_pred HHHHHcCCccc
Q 029199 162 GFLWETEEDND 172 (197)
Q Consensus 162 ~~~~~~g~~~e 172 (197)
..|.++++..|
T Consensus 1174 ~AyAkt~rl~e 1184 (1666)
T KOG0985|consen 1174 FAYAKTNRLTE 1184 (1666)
T ss_pred HHHHHhchHHH
Confidence 44445555444
No 394
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=70.04 E-value=32 Score=32.29 Aligned_cols=87 Identities=18% Similarity=0.268 Sum_probs=67.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC------
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYA--QFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHN------ 134 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la--~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~------ 134 (197)
.|++++-...-+++.++.|.++..|.+.. .......+........|++++. |-+.+.+|..++..+...++
T Consensus 126 ~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~-dy~~v~iw~e~~~y~~~~~~~~~~~~ 204 (881)
T KOG0128|consen 126 LGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG-DYNSVPIWEEVVNYLVGFGNVAKKSE 204 (881)
T ss_pred hcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc-ccccchHHHHHHHHHHhccccccccc
Confidence 48888888888888899999999998875 2333335678888999999995 77888889888877665443
Q ss_pred CHHHHHHHHHHHHHhC
Q 029199 135 DQDRAATYYERAVHAS 150 (197)
Q Consensus 135 ~~~~A~~~~~~al~~~ 150 (197)
+++.-...|+++|+.-
T Consensus 205 d~k~~R~vf~ral~s~ 220 (881)
T KOG0128|consen 205 DYKKERSVFERALRSL 220 (881)
T ss_pred cchhhhHHHHHHHhhh
Confidence 4677788888888653
No 395
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=69.74 E-value=57 Score=26.22 Aligned_cols=92 Identities=13% Similarity=0.183 Sum_probs=52.3
Q ss_pred HHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CC----------CCHHHHHHHHHHHHHHcCC----HHH
Q 029199 77 VEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA----DP----------GDGEILSQYAKLVWELHND----QDR 138 (197)
Q Consensus 77 l~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l----~P----------~~~~~~~~lg~~l~~~~~~----~~~ 138 (197)
.+-.|.....+..++.+-+...++..-|...+..-++. +| .+...++-+-.++....++ |..
T Consensus 133 ~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~ 212 (260)
T PF04190_consen 133 TKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKK 212 (260)
T ss_dssp HHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHH
T ss_pred HhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHH
Confidence 35678888888888877777689999998887766655 33 2222222222222222221 333
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 029199 139 AATYYERAVHASPEDSHVHASYAGFLWETE 168 (197)
Q Consensus 139 A~~~~~~al~~~p~~~~~~~~la~~~~~~g 168 (197)
-.+.|...|+.+|........+|.+|+...
T Consensus 213 L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~ 242 (260)
T PF04190_consen 213 LCEKYKPSLKRDPSFKEYLDKIGQLYFGIQ 242 (260)
T ss_dssp HHHHTHH---HHHHTHHHHHHHHHHHH---
T ss_pred HHHHhCccccccHHHHHHHHHHHHHHCCCC
Confidence 445566666677888888889999998764
No 396
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=69.60 E-value=17 Score=34.41 Aligned_cols=94 Identities=15% Similarity=0.002 Sum_probs=61.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 029199 71 EYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS 150 (197)
Q Consensus 71 ~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~ 150 (197)
..++++.+ +|+..++- .+ ++...+|..++|+.+|++.-+.| .+-.+|...|+ +++|.+.-+.==++.
T Consensus 790 RAlR~a~q-~~~e~eak--vA-vLAieLgMlEeA~~lYr~ckR~D--------LlNKlyQs~g~-w~eA~eiAE~~DRiH 856 (1416)
T KOG3617|consen 790 RALRRAQQ-NGEEDEAK--VA-VLAIELGMLEEALILYRQCKRYD--------LLNKLYQSQGM-WSEAFEIAETKDRIH 856 (1416)
T ss_pred HHHHHHHh-CCcchhhH--HH-HHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHhccc-HHHHHHHHhhcccee
Confidence 34455433 44433332 34 33334899999999999998743 23345666664 888888766543332
Q ss_pred CCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 151 PEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 151 p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
- -..|++++.-+...++.+.|+..|++
T Consensus 857 L--r~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 857 L--RNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred h--hhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 2 24688999999999998888888876
No 397
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=68.98 E-value=34 Score=30.93 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 029199 65 DSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYE 144 (197)
Q Consensus 65 ~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~ 144 (197)
..+.+....+.-+.-....+...+..+.++.. .++.++|-.+|++.+..+|+ ..++.++.-++..|- ..+|...+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~ 98 (578)
T PRK15490 23 KLAQAVALIDSELPTEALTSLAMLKKAEFLHD-VNETERAYALYETLIAQNND--EARYEYARRLYNTGL-AKDAQLILK 98 (578)
T ss_pred hHHHHHHHHHHhCCccchhHHHHHHHhhhhhh-hhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhh-hhHHHHHHH
Confidence 33444444443333333334444455555555 67777777777777777776 455556666666553 556666555
No 398
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=68.86 E-value=10 Score=18.76 Aligned_cols=24 Identities=8% Similarity=-0.005 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 029199 89 NYAQFLYQSKQDLPKAEEYYSRAIL 113 (197)
Q Consensus 89 ~la~~l~~~~g~~~~A~~~~~~al~ 113 (197)
.+-..+.+ .|++++|.+.|++..+
T Consensus 5 ~li~~~~~-~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 5 SLISGYCK-MGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHc-cchHHHHHHHHHHHhH
Confidence 33334444 6666666666666544
No 399
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.44 E-value=22 Score=34.45 Aligned_cols=66 Identities=21% Similarity=0.137 Sum_probs=47.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 029199 98 KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDEC 174 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~ 174 (197)
.+..+.|.+.-+++ +.|.+|..+|.+-.+.+. ..+|++.|-+| ++|..+.....+-.+.|++++-+
T Consensus 1088 i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~-v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv 1153 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGL-VKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLV 1153 (1666)
T ss_pred hhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCc-hHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHH
Confidence 45555555554444 458888888888777554 78888888775 56777888888888888888743
No 400
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.16 E-value=77 Score=28.79 Aligned_cols=91 Identities=15% Similarity=0.161 Sum_probs=59.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHH-----HHhCCCCHHHHHHHHHHHHHHcC
Q 029199 61 GSGGDSQGVEEYYKKMVEENPG-NPLFLSNYAQFLYQSKQDLPKAEEYYSRA-----ILADPGDGEILSQYAKLVWELHN 134 (197)
Q Consensus 61 ~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~l~~~~g~~~~A~~~~~~a-----l~l~P~~~~~~~~lg~~l~~~~~ 134 (197)
.++|=+..|.+..+-.++++|. ||.+...+-.++..+..+|+==++.++.. +..-|+-+.. ..++.+|.....
T Consensus 353 ~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS-~AlA~f~l~~~~ 431 (665)
T KOG2422|consen 353 AQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYS-LALARFFLRKNE 431 (665)
T ss_pred HhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHH-HHHHHHHHhcCC
Confidence 4458899999999999999999 88876666655555466776666666555 3333443322 223334443222
Q ss_pred --CHHHHHHHHHHHHHhCCC
Q 029199 135 --DQDRAATYYERAVHASPE 152 (197)
Q Consensus 135 --~~~~A~~~~~~al~~~p~ 152 (197)
+.+.|+..+.+|+...|.
T Consensus 432 ~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 432 EDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hhhHHHHHHHHHHHHHhCcH
Confidence 145788889999988873
No 401
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=66.97 E-value=57 Score=25.25 Aligned_cols=55 Identities=9% Similarity=-0.048 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 029199 61 GSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD 115 (197)
Q Consensus 61 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~ 115 (197)
...||++.|-++|--.++..+-|....=++|.-+....+.-....+.++......
T Consensus 52 llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y 106 (199)
T PF04090_consen 52 LLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFY 106 (199)
T ss_pred HHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHH
Confidence 4469999999999999999888877666677555553554444446666554443
No 402
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=66.75 E-value=43 Score=24.52 Aligned_cols=51 Identities=20% Similarity=0.279 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA 114 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l 114 (197)
.|+.++-.+.+....+-+..+|+.+..+|..|.+ .|+..+|-+.+++|-+.
T Consensus 99 ~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~k-lg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 99 QGKKDQLDKIYNELKKNEEINPEFLVKIANAYKK-LGNTREANELLKEACEK 149 (161)
T ss_dssp TT-HHHHHHHHHHH-----S-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH-hcchhhHHHHHHHHHHh
Confidence 3777777788888877667789999999977777 99999999999998764
No 403
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.58 E-value=33 Score=30.59 Aligned_cols=83 Identities=23% Similarity=0.153 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 029199 67 QGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG--DGEILSQYAKLVWELHNDQDRAATYYE 144 (197)
Q Consensus 67 ~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~--~~~~~~~lg~~l~~~~~~~~~A~~~~~ 144 (197)
+...+.+....+..|+++....+.+..+.. .|+.+.|+..++..+...=. ..-..+.+|+++..+.+ |.+|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~-~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~-~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSI-KGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQ-YSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHH-cccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHH
Confidence 677788888888999999999999988887 78888888888888871111 22345677888888775 899999999
Q ss_pred HHHHhCC
Q 029199 145 RAVHASP 151 (197)
Q Consensus 145 ~al~~~p 151 (197)
.....+.
T Consensus 328 ~L~desd 334 (546)
T KOG3783|consen 328 LLRDESD 334 (546)
T ss_pred HHHhhhh
Confidence 8877654
No 404
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=66.48 E-value=28 Score=28.60 Aligned_cols=97 Identities=11% Similarity=0.129 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--cCCHH
Q 029199 67 QGVEEYYKKMVEENPGNPLFLSNYAQFLYQ-------SKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWEL--HNDQD 137 (197)
Q Consensus 67 ~~A~~~~~~al~~~P~~~~~~~~la~~l~~-------~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~--~~~~~ 137 (197)
..|++.-...+..+|..-.+|+-.-.++.. ...-.+.-+..+..+++-+|++-.+|...-.++-.. .. ++
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~-~~ 127 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPS-WG 127 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcc-cc
Confidence 467788888888899888888866545443 223457778889999999999999999998876654 43 77
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 029199 138 RAATYYERAVHASPEDSHVHASYAGFL 164 (197)
Q Consensus 138 ~A~~~~~~al~~~p~~~~~~~~la~~~ 164 (197)
.-....++.++.||.|..+|..+-+|+
T Consensus 128 rEl~itkklld~DsrNyH~W~YR~~vl 154 (328)
T COG5536 128 RELFITKKLLDSDSRNYHVWSYRRWVL 154 (328)
T ss_pred hhHHHHHHHhcccccccceeeeEeeee
Confidence 778888999999999999988777666
No 405
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=65.50 E-value=18 Score=35.52 Aligned_cols=109 Identities=19% Similarity=0.230 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEE--------NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA--------DPGDGEILSQYA 126 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l--------~P~~~~~~~~lg 126 (197)
.|++++|+..-.++.-+ .|+....+.+++...+. .++...|...+.+++.+ .|.-.....+++
T Consensus 986 ~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~-~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle 1064 (1236)
T KOG1839|consen 986 LGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFA-VKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLE 1064 (1236)
T ss_pred hcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHh-ccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHH
Confidence 48888888877666433 25566778888855555 77899999999888876 455666678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-----CC---CHHHHHHHHHHHHHcCCcccc
Q 029199 127 KLVWELHNDQDRAATYYERAVHAS-----PE---DSHVHASYAGFLWETEEDNDE 173 (197)
Q Consensus 127 ~~l~~~~~~~~~A~~~~~~al~~~-----p~---~~~~~~~la~~~~~~g~~~ea 173 (197)
.++..+++ ++.|+.+++.|+..+ |. +...+..++..+...+++..+
T Consensus 1065 ~l~~~v~e-~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~a 1118 (1236)
T KOG1839|consen 1065 LLLLGVEE-ADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNA 1118 (1236)
T ss_pred HHHhhHHH-HHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHH
Confidence 88888885 999999999999865 22 333445555555555555443
No 406
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=65.02 E-value=30 Score=32.47 Aligned_cols=107 Identities=16% Similarity=0.090 Sum_probs=65.9
Q ss_pred cccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHH
Q 029199 58 YPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADP--------GDGEILSQYAKLV 129 (197)
Q Consensus 58 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P--------~~~~~~~~lg~~l 129 (197)
..|...+..+.|++.|+++.+..|.--. -.|++.++......|+...+.=.-.++++. .+-.-++..|..+
T Consensus 295 S~ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~ 373 (1226)
T KOG4279|consen 295 SNYTDAESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYF 373 (1226)
T ss_pred cCCcchhhHHHHHHHHHHHhccCchhhc-cccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhh
Confidence 4555668889999999999999997544 345776666533345555554444444432 1112222222111
Q ss_pred --HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 029199 130 --WELHNDQDRAATYYERAVHASPEDSHVHASYAGFLW 165 (197)
Q Consensus 130 --~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 165 (197)
.-+.+|+.+|++.-+...++.|..+..-..+..++.
T Consensus 374 ~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~meni~l 411 (1226)
T KOG4279|consen 374 EASVLANDYQKAIQAAEMMFKLKPPVWYLKSTMENILL 411 (1226)
T ss_pred hhhhhccCHHHHHHHHHHHhccCCceehHHHHHHHHHH
Confidence 112336899999999999999877666555555543
No 407
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=64.98 E-value=80 Score=28.68 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYS 109 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~ 109 (197)
+..++|-.+|++.+..+|+ ..++.++.-+++ .|-...|...+.
T Consensus 56 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~ 98 (578)
T PRK15490 56 NETERAYALYETLIAQNND--EARYEYARRLYN-TGLAKDAQLILK 98 (578)
T ss_pred hhhHhHHHHHHHHHHhCCc--chHHHHHHHHHh-hhhhhHHHHHHH
Confidence 8889999999999999999 667778888887 898888888777
No 408
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=64.80 E-value=36 Score=28.60 Aligned_cols=46 Identities=11% Similarity=-0.035 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSR 110 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~ 110 (197)
...-+|+-.++.+++.+|.+.....-+..+|.. .|-.+.|...|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~-LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSL-LGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHh
Confidence 456688888999999999999988888867666 8999999888864
No 409
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=63.87 E-value=66 Score=27.45 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHH--HHHHH--HHHHHHhcCCHHHHHHHHHHHHHh
Q 029199 61 GSGGDSQGVEEYYKKMVEENPGNPL--FLSNY--AQFLYQSKQDLPKAEEYYSRAILA 114 (197)
Q Consensus 61 ~~~g~~~~A~~~~~~al~~~P~~~~--~~~~l--a~~l~~~~g~~~~A~~~~~~al~l 114 (197)
...++|..|.+.++.+...-|.... .+..+ |...+. .-++.+|.+.+++.+..
T Consensus 142 ~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD-~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWD-RFDHKEALEYLEKLLKR 198 (379)
T ss_pred HhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHH
Confidence 3458889999998888875333333 33333 334455 67888999988887764
No 410
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=63.81 E-value=72 Score=25.27 Aligned_cols=51 Identities=18% Similarity=0.070 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCccc
Q 029199 121 ILSQYAKLVWELHNDQDRAATYYERAVHASP------EDSHVHASYAGFLWETEEDND 172 (197)
Q Consensus 121 ~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~e 172 (197)
+...+|..|+..| ++++|+++|+.+..... =-..+...+..|..++|+.++
T Consensus 180 l~~~~A~ey~~~g-~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~ 236 (247)
T PF11817_consen 180 LSLEMAEEYFRLG-DYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVED 236 (247)
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHH
Confidence 3345555556555 36666666666643321 122345555566666665554
No 411
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=63.81 E-value=16 Score=29.03 Aligned_cols=92 Identities=14% Similarity=0.004 Sum_probs=50.9
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCHHHH------------HHHHHHHHHhcCCH-HHH-HHHHHHHHHh--CCCCHHHH
Q 029199 59 PAGSGGDSQGVEEYYKKMVEENPGNPLFL------------SNYAQFLYQSKQDL-PKA-EEYYSRAILA--DPGDGEIL 122 (197)
Q Consensus 59 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~------------~~la~~l~~~~g~~-~~A-~~~~~~al~l--~P~~~~~~ 122 (197)
++...|+++.|++...-+|+.+-.-|+-+ ...+...+. .|+. +-. ...+.....- -|+...+.
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~-ag~~~e~~~~~~~~~l~~~~dmpd~vrAK 170 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAAS-AGESVEPYFLRVFLDLTTEWDMPDEVRAK 170 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHH-cCCCCChHHHHHHHHHHhcCCCChHHHHH
Confidence 45667999999999999999863332221 122222222 3321 111 1222222211 25555444
Q ss_pred HH--HHHHHH---------HHcCCHHHHHHHHHHHHHhCCC
Q 029199 123 SQ--YAKLVW---------ELHNDQDRAATYYERAVHASPE 152 (197)
Q Consensus 123 ~~--lg~~l~---------~~~~~~~~A~~~~~~al~~~p~ 152 (197)
+. .|..+. ..+ +..+|+.++++|++++|.
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~-~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAE-TLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcc-cHHHHHHHHHHHHHhCCC
Confidence 44 344442 223 477999999999999986
No 412
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=63.63 E-value=37 Score=21.80 Aligned_cols=14 Identities=14% Similarity=0.266 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhC
Q 029199 67 QGVEEYYKKMVEEN 80 (197)
Q Consensus 67 ~~A~~~~~~al~~~ 80 (197)
.+|+..+.+|++.+
T Consensus 4 ~~A~~l~~~Ave~d 17 (75)
T cd02677 4 EQAAELIRLALEKE 17 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555543
No 413
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=63.42 E-value=23 Score=29.84 Aligned_cols=45 Identities=20% Similarity=0.124 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 029199 100 DLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYER 145 (197)
Q Consensus 100 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~ 145 (197)
..-+|+-+++.+++.+|.|+.+...+-.+|..+|- .+.|...|..
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~-~~~A~~~~~~ 242 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGA-GSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHh
Confidence 34567777777777778888777777777777775 6777776643
No 414
>PF13041 PPR_2: PPR repeat family
Probab=62.55 E-value=27 Score=19.86 Aligned_cols=21 Identities=5% Similarity=-0.021 Sum_probs=10.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHh
Q 029199 93 FLYQSKQDLPKAEEYYSRAILA 114 (197)
Q Consensus 93 ~l~~~~g~~~~A~~~~~~al~l 114 (197)
.+.+ .|++++|.+.|++..+.
T Consensus 12 ~~~~-~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 12 GYCK-AGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHH-CcCHHHHHHHHHHHHHc
Confidence 3343 55555555555555543
No 415
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.40 E-value=49 Score=22.85 Aligned_cols=54 Identities=15% Similarity=0.190 Sum_probs=37.2
Q ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 029199 70 EEYYKKMVEEN-PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQ 124 (197)
Q Consensus 70 ~~~~~~al~~~-P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 124 (197)
.+.++++-..+ |--|-+|..||.++. ..|+.+.|...|+.=-.+.|.+...+..
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys-~~G~~e~a~~eFetEKalFPES~~fmDF 111 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYS-NSGKDEQAVREFETEKALFPESGVFMDF 111 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHh-hcCChHHHHHHHHHhhhhCccchhHHHH
Confidence 34445544333 344667888894444 4899999999998888889988766543
No 416
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=61.03 E-value=17 Score=20.62 Aligned_cols=26 Identities=38% Similarity=0.344 Sum_probs=13.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHc
Q 029199 108 YSRAILADPGDGEILSQYAKLVWELH 133 (197)
Q Consensus 108 ~~~al~l~P~~~~~~~~lg~~l~~~~ 133 (197)
|.+++--+|++...+.-++..+...|
T Consensus 5 ll~AI~~~P~ddt~RLvYADWL~e~g 30 (42)
T TIGR02996 5 LLRAILAHPDDDTPRLVYADWLDEHG 30 (42)
T ss_pred HHHHHHhCCCCcchHHHHHHHHHHcC
Confidence 44455555555555555555555533
No 417
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=60.89 E-value=10 Score=20.55 Aligned_cols=30 Identities=20% Similarity=0.158 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh
Q 029199 120 EILSQYAKLVWELHN--DQDRAATYYERAVHA 149 (197)
Q Consensus 120 ~~~~~lg~~l~~~~~--~~~~A~~~~~~al~~ 149 (197)
...+++|+++..... |..+.+..++..++.
T Consensus 2 qt~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~~ 33 (35)
T PF14852_consen 2 QTQFNYAWGLVKSNNREDQQEGIALLEELYRD 33 (35)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHCCC
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 455667776665432 234555555555443
No 418
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=60.56 E-value=45 Score=35.07 Aligned_cols=105 Identities=14% Similarity=0.253 Sum_probs=75.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHHcCCHHHHH
Q 029199 62 SGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAK-LVWELHNDQDRAA 140 (197)
Q Consensus 62 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~-~l~~~~~~~~~A~ 140 (197)
..|++..|..||+++++.+|+....+...-...+. .+.++..+.+.+-.....++...-|+++|. +-+..+ +++.-.
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~-~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~-qwD~~e 1538 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLA-IQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLS-QWDLLE 1538 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCCccccchhhHHHhhhc-ccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhc-chhhhh
Confidence 34999999999999999999987777666556666 789999999888888888888888888875 335555 477666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCccc
Q 029199 141 TYYERAVHASPEDSHVHASYAGFLWETEEDND 172 (197)
Q Consensus 141 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 172 (197)
.+.. ..+-++..+.. +|.++....+-|.
T Consensus 1539 ~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~ 1566 (2382)
T KOG0890|consen 1539 SYLS---DRNIEYWSVES-IGKLLLRNKKKDE 1566 (2382)
T ss_pred hhhh---cccccchhHHH-HHHHHHhhcccch
Confidence 6554 22333333332 6777766655554
No 419
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.43 E-value=58 Score=23.02 Aligned_cols=75 Identities=11% Similarity=0.153 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHc
Q 029199 65 DSQGVEEYYKKMVEENPGN---------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILA--DPGDGEILSQYAKLVWELH 133 (197)
Q Consensus 65 ~~~~A~~~~~~al~~~P~~---------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~l~~~~ 133 (197)
....-...++++++.-.++ ..+|..++ ...+.+.+.|...... --..+..+...|..+...+
T Consensus 41 ~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya-------~~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~ 113 (126)
T PF08311_consen 41 KQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYA-------DLSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRG 113 (126)
T ss_dssp CCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHH-------TTBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHH-------HHccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcC
Confidence 3344566777777765443 23333333 2233778888877764 4677888888898888877
Q ss_pred CCHHHHHHHHHHHH
Q 029199 134 NDQDRAATYYERAV 147 (197)
Q Consensus 134 ~~~~~A~~~~~~al 147 (197)
++++|.+.|+.+|
T Consensus 114 -~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 114 -NFKKADEIYQLGI 126 (126)
T ss_dssp --HHHHHHHHHHHH
T ss_pred -CHHHHHHHHHhhC
Confidence 4999999998875
No 420
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.31 E-value=71 Score=29.26 Aligned_cols=66 Identities=12% Similarity=-0.007 Sum_probs=36.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199 72 YYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVH 148 (197)
Q Consensus 72 ~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~ 148 (197)
..++||++.|+. .-.+.++ .+ .|+++.|.+... +-+++.=|-.+|.+....+ ++..|.+||.++-.
T Consensus 629 ~~e~AL~~s~D~-d~rFela---l~-lgrl~iA~~la~-----e~~s~~Kw~~Lg~~al~~~-~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 629 MKEQALELSTDP-DQRFELA---LK-LGRLDIAFDLAV-----EANSEVKWRQLGDAALSAG-ELPLASECFLRARD 694 (794)
T ss_pred chHhhhhcCCCh-hhhhhhh---hh-cCcHHHHHHHHH-----hhcchHHHHHHHHHHhhcc-cchhHHHHHHhhcc
Confidence 344555555432 2233333 23 566665554332 2345666777777766655 47777777777644
No 421
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=58.96 E-value=20 Score=33.51 Aligned_cols=87 Identities=16% Similarity=0.191 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 029199 63 GGDSQGVEEYYKKMVEEN-PGNPLFLSNYAQFLYQ--------SKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELH 133 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~l~~--------~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~ 133 (197)
-|+-++|+...-.+++.. |-.++.+...|.+|.. ..+..+.|+++|++|.+..|.-..- .|++.++...|
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sG-IN~atLL~aaG 334 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSG-INLATLLRAAG 334 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhcc-ccHHHHHHHhh
Confidence 489999999998888876 4445566555655432 1235678999999999999965443 67788888888
Q ss_pred CCHHHHHHHHHHHHHhC
Q 029199 134 NDQDRAATYYERAVHAS 150 (197)
Q Consensus 134 ~~~~~A~~~~~~al~~~ 150 (197)
++|+...+.=.-++.++
T Consensus 335 ~~Fens~Elq~IgmkLn 351 (1226)
T KOG4279|consen 335 EHFENSLELQQIGMKLN 351 (1226)
T ss_pred hhccchHHHHHHHHHHH
Confidence 87877776655555544
No 422
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=58.74 E-value=1.4e+02 Score=26.93 Aligned_cols=129 Identities=9% Similarity=-0.043 Sum_probs=78.7
Q ss_pred HhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-
Q 029199 34 LAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAI- 112 (197)
Q Consensus 34 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al- 112 (197)
+..++.+..|+.+. |... +......-...+..++.++-+-.++...-|..++.....+.|+..+|...+.+.=
T Consensus 18 illa~vla~C~t~~-----~~~~-~~~lq~~a~a~s~~yl~qa~qs~~~~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~ 91 (604)
T COG3107 18 ILLALVLAGCSTFL-----PSGS-VVLLQGTANASSQFYLQQAQQSSGEQQNDWLLLAARALVEEGKTAQAQALLNQLPQ 91 (604)
T ss_pred HHHHHHHHhhccCC-----CCCc-hhhccCCcchhHHHHHHHHhhcCchhhhhHHHHHHHHHHHcCChHHHHHHHHhccc
Confidence 34456677775421 1111 3334444445666777888888887777788777544444899999999998865
Q ss_pred HhCCCCHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Q 029199 113 LADPGDGEILSQ-YAKLVWELHNDQDRAATYYERAVHAS-PEDSHVHASYAGFLWETEE 169 (197)
Q Consensus 113 ~l~P~~~~~~~~-lg~~l~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~ 169 (197)
.+.|..-.-+.. .+.+... .+++..|.+.+.+..--+ |.+-.+.|..+.+-...++
T Consensus 92 ~Ltd~Q~~~~~LL~ael~la-~~q~~~Al~~L~~~~~~~ls~~Qq~Ry~q~~a~a~ea~ 149 (604)
T COG3107 92 ELTDAQRAEKSLLAAELALA-QKQPAAALQQLAKLLPADLSQNQQARYYQARADALEAR 149 (604)
T ss_pred cCCHHHHHHHHHHHHHHHHh-ccChHHHHHHHhhcchhhcCHHHHHHHHHHHHHHHhcc
Confidence 555544333333 3444444 446889999998875433 5555555555555544444
No 423
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=58.59 E-value=40 Score=21.74 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHH
Q 029199 136 QDRAATYYERAVHASPEDSHVHA 158 (197)
Q Consensus 136 ~~~A~~~~~~al~~~p~~~~~~~ 158 (197)
|.+|++.+.+++...|+++.-..
T Consensus 29 Y~~aIe~L~q~~~~~pD~~~k~~ 51 (75)
T cd02682 29 YKKAIEVLSQIVKNYPDSPTRLI 51 (75)
T ss_pred HHHHHHHHHHHHHhCCChHHHHH
Confidence 34555555566666666665433
No 424
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=58.52 E-value=32 Score=21.29 Aligned_cols=16 Identities=31% Similarity=0.347 Sum_probs=10.1
Q ss_pred cCCHHHHHHHHHHHHH
Q 029199 98 KQDLPKAEEYYSRAIL 113 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~ 113 (197)
.|++++|+.+|.+++.
T Consensus 18 ~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 18 AGNYEEALELYKEAIE 33 (69)
T ss_dssp TTSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5666666666666554
No 425
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=58.05 E-value=35 Score=27.08 Aligned_cols=77 Identities=18% Similarity=0.092 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHH
Q 029199 65 DSQGVEEYYKKMVEENPGN------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD------GEILSQYAKLVWEL 132 (197)
Q Consensus 65 ~~~~A~~~~~~al~~~P~~------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~l~~~ 132 (197)
.....++.+++|....... ..+...+|..++. .|++++|++.|+.+....-.. ..+...+-.|...+
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~-~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~ 231 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFR-LGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL 231 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 4456677777776654322 2344577888887 899999999999986653322 23444455566665
Q ss_pred cCCHHHHHHHH
Q 029199 133 HNDQDRAATYY 143 (197)
Q Consensus 133 ~~~~~~A~~~~ 143 (197)
+ +.++.+.+.
T Consensus 232 ~-~~~~~l~~~ 241 (247)
T PF11817_consen 232 G-DVEDYLTTS 241 (247)
T ss_pred C-CHHHHHHHH
Confidence 6 355544443
No 426
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=55.60 E-value=24 Score=25.45 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHH
Q 029199 66 SQGVEEYYKKMVEENPGNPLFLSN 89 (197)
Q Consensus 66 ~~~A~~~~~~al~~~P~~~~~~~~ 89 (197)
.+.|.+.|+++++..|++..+|..
T Consensus 92 ~e~Ae~vY~el~~~~P~HLpaHla 115 (139)
T PF12583_consen 92 PENAEQVYEELLEAHPDHLPAHLA 115 (139)
T ss_dssp HHHHHHHHHHHHHH-TT-THHHHH
T ss_pred HHHHHHHHHHHHHHCcchHHHHHH
Confidence 344445555555555555444443
No 427
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=55.38 E-value=30 Score=21.85 Aligned_cols=15 Identities=13% Similarity=0.202 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHhC
Q 029199 66 SQGVEEYYKKMVEEN 80 (197)
Q Consensus 66 ~~~A~~~~~~al~~~ 80 (197)
+++|..+..+|++.+
T Consensus 5 ~~~A~~li~~Av~~d 19 (77)
T smart00745 5 LSKAKELISKALKAD 19 (77)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666655554443
No 428
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=55.08 E-value=35 Score=21.82 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=9.9
Q ss_pred cCCHHHHHHHHHHHHH
Q 029199 98 KQDLPKAEEYYSRAIL 113 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~ 113 (197)
.|++++|+.+|..+++
T Consensus 19 ~g~y~eA~~lY~~ale 34 (75)
T cd02684 19 RGDAAAALSLYCSALQ 34 (75)
T ss_pred hccHHHHHHHHHHHHH
Confidence 5666666666666654
No 429
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=54.54 E-value=72 Score=26.92 Aligned_cols=79 Identities=22% Similarity=0.187 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHhCC--CCHHHHH-HHHHHHHHHcCCHHHHHHH
Q 029199 68 GVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYY--SRAILADP--GDGEILS-QYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 68 ~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~--~~al~l~P--~~~~~~~-~lg~~l~~~~~~~~~A~~~ 142 (197)
.-++.+++--..-|+..+.++.++.+.|. -|+|..|-.++ =+++-.+| ++..+++ .+| .-.-+. +|+-|.+-
T Consensus 113 ~~l~~L~e~ynf~~e~i~~lykyakfqye-CGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlA-SEIL~q-nWd~A~ed 189 (432)
T KOG2758|consen 113 QNLQHLQEHYNFTPERIETLYKYAKFQYE-CGNYSGASDYLYFYRALVSDPDRNYLSALWGKLA-SEILTQ-NWDGALED 189 (432)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHH-HHHHHh-hHHHHHHH
Confidence 44555666666778888999999999998 99999998874 34443333 3344433 333 233445 48999888
Q ss_pred HHHHHHh
Q 029199 143 YERAVHA 149 (197)
Q Consensus 143 ~~~al~~ 149 (197)
+.+.-+.
T Consensus 190 L~rLre~ 196 (432)
T KOG2758|consen 190 LTRLREY 196 (432)
T ss_pred HHHHHHH
Confidence 8776544
No 430
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=54.50 E-value=20 Score=35.22 Aligned_cols=116 Identities=15% Similarity=0.078 Sum_probs=84.7
Q ss_pred CCCHHHHHH------HHH-HHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Q 029199 63 GGDSQGVEE------YYK-KMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA--------DPGDGEILSQYAK 127 (197)
Q Consensus 63 ~g~~~~A~~------~~~-~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l--------~P~~~~~~~~lg~ 127 (197)
.|.+.++.+ .+. .--.+.|.....+..++.+++. .++.++|+..-.++.-+ .|+....+.+++.
T Consensus 945 e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~-~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal 1023 (1236)
T KOG1839|consen 945 EDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNR-LGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLAL 1023 (1236)
T ss_pred ccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhh-hcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHH
Confidence 455555555 554 3334578888889999978777 99999999987776544 2566677888887
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 128 LVWELHNDQDRAATYYERAVHAS--------PEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 128 ~l~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
..+..+. ...|...+.+++.+. |.-.....+++.++...++++.|.+..+.+
T Consensus 1024 ~~f~~~~-~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A 1083 (1236)
T KOG1839|consen 1024 YEFAVKN-LSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESA 1083 (1236)
T ss_pred HHHhccC-ccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 7788774 789999999988763 444455678888888888888876665553
No 431
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=54.10 E-value=46 Score=31.37 Aligned_cols=73 Identities=19% Similarity=0.081 Sum_probs=47.1
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCcccccc
Q 029199 97 SKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED-SHVHASYAGFLWETEEDNDECD 175 (197)
Q Consensus 97 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~ea~~ 175 (197)
..|+++-|+++|.++-.. ..--.+|-+.|+ +++|.+.-++... |+. ...+...+.-+.+.|++.||++
T Consensus 777 n~~dfe~ae~lf~e~~~~--------~dai~my~k~~k-w~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeq 845 (1636)
T KOG3616|consen 777 NKGDFEIAEELFTEADLF--------KDAIDMYGKAGK-WEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQ 845 (1636)
T ss_pred cchhHHHHHHHHHhcchh--------HHHHHHHhcccc-HHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhh
Confidence 377888888887765321 111123444454 7777776666532 443 3456677788899999999998
Q ss_pred CCCcc
Q 029199 176 APSEL 180 (197)
Q Consensus 176 ~~~~~ 180 (197)
.|-++
T Consensus 846 lyiti 850 (1636)
T KOG3616|consen 846 LYITI 850 (1636)
T ss_pred eeEEc
Confidence 88875
No 432
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=53.91 E-value=40 Score=19.16 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=28.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 029199 71 EYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKA 104 (197)
Q Consensus 71 ~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A 104 (197)
..|..+|-.+|++...+.-++..+-. .|+...|
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~e-~gdp~ra 35 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLDE-HGDPARA 35 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHH-cCCHHHH
Confidence 45778899999999999999998888 8988654
No 433
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=52.82 E-value=36 Score=21.46 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=9.0
Q ss_pred cCCHHHHHHHHHHHHH
Q 029199 98 KQDLPKAEEYYSRAIL 113 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~ 113 (197)
.|++++|+.+|..+++
T Consensus 19 ~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 19 DGNYEEALELYKEALD 34 (75)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4556665555555544
No 434
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=52.55 E-value=49 Score=30.80 Aligned_cols=102 Identities=19% Similarity=0.146 Sum_probs=75.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 029199 61 GSGGDSQGVEEYYKKMVEENPGN----PLFLSNYAQFLYQ-SKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHND 135 (197)
Q Consensus 61 ~~~g~~~~A~~~~~~al~~~P~~----~~~~~~la~~l~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~ 135 (197)
.+.+++..+.--|..++.+-|.+ .....+.+.++.. ..+++.+++.-..-++...|.-..++.-.+.+|..+++
T Consensus 64 ~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k- 142 (748)
T KOG4151|consen 64 FQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNK- 142 (748)
T ss_pred hhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHH-
Confidence 33467777777778888887733 4445556644443 24699999999999999999999999998889999887
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 136 QDRAATYYERAVHASPEDSHVHASYAGF 163 (197)
Q Consensus 136 ~~~A~~~~~~al~~~p~~~~~~~~la~~ 163 (197)
++-|.+.+.-....+|.++.+-.....+
T Consensus 143 ~d~a~rdl~i~~~~~p~~~~~~eif~el 170 (748)
T KOG4151|consen 143 LDLAVRDLRIVEKMDPSNVSASEIFEEL 170 (748)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHH
Confidence 7889888877788889986654433333
No 435
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=51.93 E-value=31 Score=37.53 Aligned_cols=97 Identities=13% Similarity=0.084 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---CC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSK---QD----LPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQ 136 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~---g~----~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~ 136 (197)
|+.++|-+.|..|++++-..+.+|...|..+..+- +. -..|+.||-+|.... ++..+.-.++.+++-+. +
T Consensus 2826 ~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~-~~skaRk~iakvLwLls--~ 2902 (3550)
T KOG0889|consen 2826 GKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLY-NSSKARKLIAKVLWLLS--F 2902 (3550)
T ss_pred cCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccc-cchhhHHHHHHHHHHHH--h
Confidence 88899999999999999888999988885544311 11 234677777776644 33444455666666654 3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 137 DRAATYYERAVHASPEDSHVHASYAGF 163 (197)
Q Consensus 137 ~~A~~~~~~al~~~p~~~~~~~~la~~ 163 (197)
++|..-+.+++...-....+|+.+.++
T Consensus 2903 dda~~~l~~~~~k~l~~ip~~~wl~~I 2929 (3550)
T KOG0889|consen 2903 DDSLGTLGDVFDKFLGEIPVWNWLYFI 2929 (3550)
T ss_pred ccccchHHHHHHHhhccCCchhhhhhh
Confidence 556555555555544444444444443
No 436
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=51.73 E-value=26 Score=30.08 Aligned_cols=46 Identities=26% Similarity=0.264 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHH
Q 029199 101 LPKAEEYYSRAILADPGDGEILSQYAKLVWELHN-----------DQDRAATYYERAVH 148 (197)
Q Consensus 101 ~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~-----------~~~~A~~~~~~al~ 148 (197)
..+|++++++|.. -++|..|.++|-++..+|+ -|++|.+.+.+|-.
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~ 390 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANK 390 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhh
Confidence 4556777777654 5677778888777776654 24566666666643
No 437
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.23 E-value=59 Score=30.74 Aligned_cols=84 Identities=14% Similarity=0.193 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199 84 PLFLSNYAQFLYQSKQDLPKAEEYYSRAIL-ADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG 162 (197)
Q Consensus 84 ~~~~~~la~~l~~~~g~~~~A~~~~~~al~-l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 162 (197)
...+..+|..+|. .|++++|...|-+.+. ++|...--.+ ...++ ..+-..+++...+..-.+.+--.-|-.
T Consensus 368 ~~i~~kYgd~Ly~-Kgdf~~A~~qYI~tI~~le~s~Vi~kf------Ldaq~-IknLt~YLe~L~~~gla~~dhttlLLn 439 (933)
T KOG2114|consen 368 AEIHRKYGDYLYG-KGDFDEATDQYIETIGFLEPSEVIKKF------LDAQR-IKNLTSYLEALHKKGLANSDHTTLLLN 439 (933)
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHcccCChHHHHHHh------cCHHH-HHHHHHHHHHHHHcccccchhHHHHHH
Confidence 4567789999998 9999999999988874 3443222111 22232 444455555555555445555566677
Q ss_pred HHHHcCCcccccc
Q 029199 163 FLWETEEDNDECD 175 (197)
Q Consensus 163 ~~~~~g~~~ea~~ 175 (197)
||.++++.+.=.+
T Consensus 440 cYiKlkd~~kL~e 452 (933)
T KOG2114|consen 440 CYIKLKDVEKLTE 452 (933)
T ss_pred HHHHhcchHHHHH
Confidence 8888887766433
No 438
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=49.07 E-value=26 Score=26.90 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=27.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 029199 93 FLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVW 130 (197)
Q Consensus 93 ~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~ 130 (197)
++.+ .|.+++|.+.+++... +|++......+..+-.
T Consensus 120 VCm~-~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~ 155 (200)
T cd00280 120 VCME-NGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHh-cCchHHHHHHHHHHhc-CCCchhHHHHHHHHHH
Confidence 4555 8999999999999888 8888887777765533
No 439
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=48.94 E-value=49 Score=28.60 Aligned_cols=116 Identities=9% Similarity=0.021 Sum_probs=64.7
Q ss_pred CCCHHHHHHHHHHH--------HHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 029199 63 GGDSQGVEEYYKKM--------VEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHN 134 (197)
Q Consensus 63 ~g~~~~A~~~~~~a--------l~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~ 134 (197)
.|||..|++.++.. .+.-+-+...++..|-++.. +++|.+|+..|...|-.--..-........-+-...+
T Consensus 135 LGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylM-lrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K 213 (404)
T PF10255_consen 135 LGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLM-LRRYADAIRTFSQILLYIQRTKNQYHQRSYQYDQINK 213 (404)
T ss_pred ccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHh
Confidence 49999999987653 11224456677788844444 8999999999999885322111111111111112222
Q ss_pred CHHHHHHHHHHHHHhCCC--CHHH----HHHHHHHHHHcCCccc--cccCCCc
Q 029199 135 DQDRAATYYERAVHASPE--DSHV----HASYAGFLWETEEDND--ECDAPSE 179 (197)
Q Consensus 135 ~~~~A~~~~~~al~~~p~--~~~~----~~~la~~~~~~g~~~e--a~~~~~~ 179 (197)
..|+...++--++.+.|. +..+ .-.++.-+.++.+.++ -.+.|..
T Consensus 214 ~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~ 266 (404)
T PF10255_consen 214 KNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSF 266 (404)
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHh
Confidence 356777777777777785 2222 2345555555544333 2444444
No 440
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=48.13 E-value=1.3e+02 Score=24.68 Aligned_cols=65 Identities=11% Similarity=-0.025 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199 68 GVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQ----------------------DLPKAEEYYSRAILADPGDGEILSQY 125 (197)
Q Consensus 68 ~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g----------------------~~~~A~~~~~~al~l~P~~~~~~~~l 125 (197)
.-.+.++.=++..|++..++..+|.++.. .. -.++|...+.+|+.++|+...+...+
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~-~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m 139 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVH-RAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGM 139 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHH-HHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 35566777788999999998888866554 22 55778999999999999999888777
Q ss_pred HHHHHHHc
Q 029199 126 AKLVWELH 133 (197)
Q Consensus 126 g~~l~~~~ 133 (197)
-.+-...|
T Consensus 140 ~~~s~~fg 147 (277)
T PF13226_consen 140 INISAYFG 147 (277)
T ss_pred HHHHhhcC
Confidence 65543333
No 441
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=48.11 E-value=36 Score=16.90 Aligned_cols=16 Identities=13% Similarity=0.187 Sum_probs=9.6
Q ss_pred cCCHHHHHHHHHHHHH
Q 029199 98 KQDLPKAEEYYSRAIL 113 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~ 113 (197)
.|++++|.+.|++..+
T Consensus 13 ~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 13 AGRVEEALELFKEMLE 28 (35)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5666666666665543
No 442
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=47.58 E-value=34 Score=29.51 Aligned_cols=31 Identities=6% Similarity=-0.092 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 029199 116 PGDGEILSQYAKLVWELHNDQDRAATYYERAV 147 (197)
Q Consensus 116 P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al 147 (197)
+-+..+++..|-+|.-++| |.+|+..|...|
T Consensus 161 ~~~is~~YyvGFaylMlrR-Y~DAir~f~~iL 191 (404)
T PF10255_consen 161 ACHISTYYYVGFAYLMLRR-YADAIRTFSQIL 191 (404)
T ss_pred chheehHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3455666777777666665 677777776665
No 443
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=47.49 E-value=56 Score=21.06 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=11.9
Q ss_pred hcCCHHHHHHHHHHHHH
Q 029199 97 SKQDLPKAEEYYSRAIL 113 (197)
Q Consensus 97 ~~g~~~~A~~~~~~al~ 113 (197)
..|++++|+.+|..+++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 36777777777777765
No 444
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=44.67 E-value=71 Score=27.75 Aligned_cols=75 Identities=13% Similarity=0.118 Sum_probs=46.7
Q ss_pred cCCHHHHHHHHHHHH--HhCCCCHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHc
Q 029199 98 KQDLPKAEEYYSRAI--LADPGDGEI--LSQYAKLVWELHNDQDRAATYYERAVHASPEDSHV------HASYAGFLWET 167 (197)
Q Consensus 98 ~g~~~~A~~~~~~al--~l~P~~~~~--~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~------~~~la~~~~~~ 167 (197)
.+.++.|.....++. ....+|.++ .+.+|.+-.-.. +|..|.++|-+|++..|.+..+ ...+..+-.-+
T Consensus 222 n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiql-dYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~ 300 (493)
T KOG2581|consen 222 NKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQL-DYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLL 300 (493)
T ss_pred hHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhc-chhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHc
Confidence 457777777776655 122233443 445677766545 6999999999999999974432 22223333446
Q ss_pred CCcccc
Q 029199 168 EEDNDE 173 (197)
Q Consensus 168 g~~~ea 173 (197)
|++-|-
T Consensus 301 geiPer 306 (493)
T KOG2581|consen 301 GEIPER 306 (493)
T ss_pred CCCcch
Confidence 777764
No 445
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=44.45 E-value=1.1e+02 Score=21.55 Aligned_cols=109 Identities=7% Similarity=-0.007 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHcCCHH
Q 029199 68 GVEEYYKKMVEENP---GNPLFLSNYAQFLYQSK---QDLPKAEEYYSRAILADPGDGEI----LSQYAKLVWELHNDQD 137 (197)
Q Consensus 68 ~A~~~~~~al~~~P---~~~~~~~~la~~l~~~~---g~~~~A~~~~~~al~l~P~~~~~----~~~lg~~l~~~~~~~~ 137 (197)
+-.+.|++.+.... +.-..|..+-....... +....=...++++++...+++.. .+-.-++.+. . ..+
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya-~-~~~ 80 (126)
T PF08311_consen 3 QQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYA-D-LSS 80 (126)
T ss_dssp HHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHH-T-TBS
T ss_pred HHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHH-H-Hcc
Confidence 34566777776654 45667777665554422 34455567888888776554322 1222222222 2 234
Q ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCccccccCCC
Q 029199 138 RAATYYERAVHA--SPEDSHVHASYAGFLWETEEDNDECDAPS 178 (197)
Q Consensus 138 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~ea~~~~~ 178 (197)
.+.+.|...... --..+..|-..|.++...|++++|...|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 788888887764 46788999999999999999999987664
No 446
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=43.42 E-value=2.5e+02 Score=26.97 Aligned_cols=93 Identities=16% Similarity=0.069 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 029199 84 PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG--D-------GEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS 154 (197)
Q Consensus 84 ~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~--~-------~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~ 154 (197)
|......+..... ..++++|..+..++...-|. . .+..--.|.+....+ ++++|.++.+.++..-|.+.
T Consensus 415 P~Lvll~aW~~~s-~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~-~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 415 PRLVLLQAWLLAS-QHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRG-DPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred chHHHHHHHHHHH-ccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccccc
Confidence 3333445544444 78999999999888766544 1 133334555656645 69999999999998877654
Q ss_pred -----HHHHHHHHHHHHcCCccccccCCC
Q 029199 155 -----HVHASYAGFLWETEEDNDECDAPS 178 (197)
Q Consensus 155 -----~~~~~la~~~~~~g~~~ea~~~~~ 178 (197)
.+....|.+..-.|++++|....+
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~ 521 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQ 521 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHH
Confidence 456778888888899999854433
No 447
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.00 E-value=2.5e+02 Score=25.95 Aligned_cols=48 Identities=15% Similarity=0.032 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 029199 61 GSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA 114 (197)
Q Consensus 61 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l 114 (197)
.+.|+++.|.+... ..++..=|..||..... .+++..|.+||.++-.+
T Consensus 648 l~lgrl~iA~~la~-----e~~s~~Kw~~Lg~~al~-~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAV-----EANSEVKWRQLGDAALS-AGELPLASECFLRARDL 695 (794)
T ss_pred hhcCcHHHHHHHHH-----hhcchHHHHHHHHHHhh-cccchhHHHHHHhhcch
Confidence 44577777765433 34567789999988777 99999999999998654
No 448
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.76 E-value=2.2e+02 Score=28.44 Aligned_cols=17 Identities=6% Similarity=0.216 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHHHHHh
Q 029199 63 GGDSQGVEEYYKKMVEE 79 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~ 79 (197)
.|+..+|+.+|.+|..-
T Consensus 933 tge~~kAl~cF~~a~Sg 949 (1480)
T KOG4521|consen 933 TGEPVKALNCFQSALSG 949 (1480)
T ss_pred CCchHHHHHHHHHHhhc
Confidence 48889999999988764
No 449
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=41.22 E-value=2.3e+02 Score=24.19 Aligned_cols=59 Identities=20% Similarity=0.305 Sum_probs=42.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH--HHHH--HHHHHHHHcCCHHHHHHHHHHHHHh
Q 029199 89 NYAQFLYQSKQDLPKAEEYYSRAILADPGDGE--ILSQ--YAKLVWELHNDQDRAATYYERAVHA 149 (197)
Q Consensus 89 ~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~--~~~~--lg~~l~~~~~~~~~A~~~~~~al~~ 149 (197)
..+..++. .++|..|.+.++.....-|.+.. .+.. .|.-++..- ++++|.+++++.+..
T Consensus 136 ~~a~~l~n-~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~f-d~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELFN-RYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRF-DHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHh-cCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHH
Confidence 45556777 89999999999999985344433 3333 344566766 589999999988765
No 450
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=40.43 E-value=76 Score=22.47 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=17.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 029199 125 YAKLVWELHNDQDRAATYYERAVHASPEDS 154 (197)
Q Consensus 125 lg~~l~~~~~~~~~A~~~~~~al~~~p~~~ 154 (197)
+|..+...| ++++|..+|-+|+...|...
T Consensus 69 lGE~L~~~G-~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 69 LGEQLLAQG-DYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHhCC-CHHHHHHHHHHHHHhCCCHH
Confidence 555555544 46777777777777766543
No 451
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=39.17 E-value=3e+02 Score=24.96 Aligned_cols=136 Identities=12% Similarity=-0.016 Sum_probs=0.0
Q ss_pred chhHHHHHHHH---hhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCC
Q 029199 5 ALSEEVKVMEA---LWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENP 81 (197)
Q Consensus 5 ~~~~~~~~~~a---~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P 81 (197)
+|.-.++++|| +..+.. +....-..-.++.-+..|+. ..-..=..+|+.+++++|
T Consensus 318 lLl~~~~l~eal~~~e~~c~----~~~~~lpi~~~~~lle~~d~------------------~~~~~l~~~~e~~~~~~P 375 (547)
T PF14929_consen 318 LLLIGGRLKEALNELEKFCI----SSTCALPIRLRAHLLEYFDQ------------------NNSSVLSSCLEDCLKKDP 375 (547)
T ss_pred EEeccccHHHHHHHHHHhcc----CCCccchHHHHHHHHHHhCc------------------ccHHHHHHHHHHHhcCCC
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHH---HHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------Hh
Q 029199 82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRA---ILADPGDGEILSQYAKLVWELHNDQDRAATYYERAV---------HA 149 (197)
Q Consensus 82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~a---l~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al---------~~ 149 (197)
........+. .++. . ...+.+.++-. +.+. ..+.+|..+..++.+.-.+++.-.+....++ .-
T Consensus 376 ~~~~~le~l~-~~~~-~--~~~~~~Lle~i~~~l~~~-~s~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf~~ 450 (547)
T PF14929_consen 376 TMSYSLERLI-LLHQ-K--DYSAEQLLEMIALHLDLV-PSHPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDFAG 450 (547)
T ss_pred cHHHHHHHHH-hhhh-h--HHHHHHHHHHHHHHhhcC-CCchHHHHHHHHHHhccccccccHHHHHHHHhcchhcccccc
Q ss_pred CCCCHHHHHHHHHHHHHc
Q 029199 150 SPEDSHVHASYAGFLWET 167 (197)
Q Consensus 150 ~p~~~~~~~~la~~~~~~ 167 (197)
+-.|..+|..+...+.+.
T Consensus 451 ~r~n~~aW~~l~~~l~~i 468 (547)
T PF14929_consen 451 WRKNIQAWKLLAKKLPKI 468 (547)
T ss_pred cccccHHHHHHHHHhhHh
No 452
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.26 E-value=1.8e+02 Score=28.95 Aligned_cols=141 Identities=13% Similarity=0.012 Sum_probs=72.2
Q ss_pred CCCcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC
Q 029199 1 MAGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN 80 (197)
Q Consensus 1 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 80 (197)
|-|++|...|+.-+|+.+|..+.......-.++-. -..+...+-.-..+.+| -.-..|+++|.+++++-
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~l-v~~~~p~~~sv~dG~t~----------s~e~t~lhYYlkv~rll 993 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKL-VYFLLPKRFSVADGKTP----------SEELTALHYYLKVVRLL 993 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhhccccHHHHHHH-HHHhcCCCCchhcCCCC----------CchHHHHHHHHHHHHHH
Confidence 56899999999999999998876554443322111 11111100000000000 11123677887777652
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCHHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHhCCCCH--
Q 029199 81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA-DPGDGEILSQYA---KLVWELHNDQDRAATYYERAVHASPEDS-- 154 (197)
Q Consensus 81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l-~P~~~~~~~~lg---~~l~~~~~~~~~A~~~~~~al~~~p~~~-- 154 (197)
.+.+-.+.+.+.-.+|++. .|++|......- +-..++|. +-+|.+ |+-.+|+..
T Consensus 994 ---------------e~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh-~~qAy~----ai~~npdserr 1053 (1480)
T KOG4521|consen 994 ---------------EEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGH-WFQAYK----AILRNPDSERR 1053 (1480)
T ss_pred ---------------HHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhh-HHHHHH----HHHcCCcHHHH
Confidence 2245556666666666654 344544333332 22334443 444433 333456522
Q ss_pred -HHHHHHHHHHHHcCCccc
Q 029199 155 -HVHASYAGFLWETEEDND 172 (197)
Q Consensus 155 -~~~~~la~~~~~~g~~~e 172 (197)
..+..+-.++.+-|+.+.
T Consensus 1054 rdcLRqlvivLfecg~l~~ 1072 (1480)
T KOG4521|consen 1054 RDCLRQLVIVLFECGELEA 1072 (1480)
T ss_pred HHHHHHHHHHHHhccchHH
Confidence 345677777888777655
No 453
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=37.43 E-value=89 Score=23.01 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199 124 QYAKLVWELHNDQDRAATYYERAVHASPEDSHVH 157 (197)
Q Consensus 124 ~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~ 157 (197)
.+|..+...|.+.+++..+|-+||...|...+.+
T Consensus 95 ~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL 128 (148)
T TIGR00985 95 QLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLL 128 (148)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHH
Confidence 4677788877458899999999999998755443
No 454
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=35.99 E-value=1.1e+02 Score=21.62 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199 89 NYAQFLYQSKQDLPKAEEYYSRAILADPGDGEIL 122 (197)
Q Consensus 89 ~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~ 122 (197)
.+|..+.. .|++++|..+|-+|+...|+-...+
T Consensus 68 ~lGE~L~~-~G~~~~aa~hf~nAl~V~~qP~~LL 100 (121)
T PF02064_consen 68 QLGEQLLA-QGDYEEAAEHFYNALKVCPQPAELL 100 (121)
T ss_dssp HHHHHHHH-TT-HHHHHHHHHHHHHTSSSHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHHhCCCHHHHH
Confidence 57877777 8999999999999999998765443
No 455
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=35.97 E-value=1.1e+02 Score=26.23 Aligned_cols=50 Identities=22% Similarity=0.151 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHcCCHHHH
Q 029199 88 SNYAQFLYQSKQDLPKAEEYYSRAILAD--------PGDGEILSQYAKLVWELHNDQDRA 139 (197)
Q Consensus 88 ~~la~~l~~~~g~~~~A~~~~~~al~l~--------P~~~~~~~~lg~~l~~~~~~~~~A 139 (197)
...|.-.+. ++++++|...|..|..+- -.+..+++.||..++++++ ++..
T Consensus 45 v~~G~~~~~-~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~-~e~~ 102 (400)
T KOG4563|consen 45 VQAGRRALC-NNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAK-EESQ 102 (400)
T ss_pred HHhhhHHHh-cccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 345666666 888999888888887663 3456788888988888775 4443
No 456
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=35.74 E-value=1.4e+02 Score=20.27 Aligned_cols=44 Identities=14% Similarity=-0.041 Sum_probs=26.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 029199 125 YAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEE 169 (197)
Q Consensus 125 lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 169 (197)
.|.+-...| |+++|.+.+.++-+..+..+..+..-+..-..+|+
T Consensus 65 ~Gl~al~~G-~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 65 RGLIALAEG-DWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHCC-CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 344444435 58888888888866655555555555555555553
No 457
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=35.49 E-value=1.1e+02 Score=19.31 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=8.6
Q ss_pred cCCHHHHHHHHHHHHH
Q 029199 98 KQDLPKAEEYYSRAIL 113 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~ 113 (197)
.|++++|+.+|.+++.
T Consensus 19 ~g~y~eA~~~Y~~aie 34 (75)
T cd02678 19 AGNYEEALRLYQHALE 34 (75)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4555555555555543
No 458
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.93 E-value=1.6e+02 Score=24.41 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=37.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199 98 KQDLPKAEEYYSRAILADPGDGE----ILSQYAKLVWELHNDQDRAATYYERAVH 148 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~l~P~~~~----~~~~lg~~l~~~~~~~~~A~~~~~~al~ 148 (197)
..+.++|+..|++++++.|.-.+ ++-.+-.+.+.+++ +++-.+.|.+.|.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~-~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGN-YKEMMERYKQLLT 93 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhcccc-HHHHHHHHHHHHH
Confidence 45899999999999999987654 33344567778786 7777777776654
No 459
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=34.16 E-value=68 Score=27.62 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQ 99 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g 99 (197)
.-...|++++++|.. -++|..|.++|.++.. .|
T Consensus 332 ~l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~-LG 364 (404)
T PF12753_consen 332 ELIKKALEYLKKAQD--EDDPETWVDVAEAMID-LG 364 (404)
T ss_dssp HHHHHHHHHHHHHHH--S--TTHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHhhc--cCChhHHHHHHHHHhh-hh
Confidence 345678888888865 5567788888766665 66
No 460
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=34.05 E-value=1.3e+02 Score=21.69 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=22.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 029199 98 KQDLPKAEEYYSRAILADPGDGEILSQYAKLV 129 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l 129 (197)
.-+.+.|...|+..++.+|++..++..+-..+
T Consensus 89 Kle~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 89 KLEPENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp TS-HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHCcchHHHHHHHHHcc
Confidence 45668889999999999999988887665543
No 461
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=33.67 E-value=58 Score=28.27 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHH--hCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 029199 64 GDSQGVEEYYKKMVE--ENP--GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG 119 (197)
Q Consensus 64 g~~~~A~~~~~~al~--~~P--~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~ 119 (197)
+.++.|.+...+..- .+. ..+...+-+|.+-.. +.+|..|.++|-+|+...|.+.
T Consensus 223 ~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkai-qldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 223 KLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAI-QLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHh-hcchhHHHHHHHHHHHhCcchh
Confidence 567777766666541 122 234455567755555 8999999999999999999854
No 462
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=32.05 E-value=73 Score=15.81 Aligned_cols=24 Identities=8% Similarity=-0.038 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 029199 89 NYAQFLYQSKQDLPKAEEYYSRAIL 113 (197)
Q Consensus 89 ~la~~l~~~~g~~~~A~~~~~~al~ 113 (197)
.+-..+.+ .|+++.|...|+...+
T Consensus 6 ~ll~a~~~-~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 6 ALLRACAK-AGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 33334444 6677777666666544
No 463
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=30.06 E-value=3.5e+02 Score=23.14 Aligned_cols=71 Identities=14% Similarity=0.064 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Q 029199 89 NYAQFLYQSKQDLPKAEEYYSRAILADPGDG--EILSQYAKLVWELHNDQDRAATYYERAVHAS-PEDSHVHASYA 161 (197)
Q Consensus 89 ~la~~l~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la 161 (197)
.|+.+..+ +|+..+|++.++-..+-.|-.. .++.|+-..+.+++- |.+-...+-+-=++. |....+.|.-+
T Consensus 280 RLAMCARk-lGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QA-YADvqavLakYDdislPkSA~icYTaA 353 (556)
T KOG3807|consen 280 RLAMCARK-LGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQA-YADVQAVLAKYDDISLPKSAAICYTAA 353 (556)
T ss_pred HHHHHHHH-hhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccccCcchHHHHHHHH
Confidence 45655555 8888888888888777666221 234444444444442 333333333322222 44444444443
No 464
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=29.39 E-value=1.7e+02 Score=19.17 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=18.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199 98 KQDLPKAEEYYSRAILADPGDGEILSQYA 126 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg 126 (197)
-++...++..-.+.++.+|+||.++-.+-
T Consensus 20 a~~~~~~l~~Al~~l~~~pdnP~~LA~~Q 48 (80)
T PRK15326 20 VDNLQTQVTEALDKLAAKPSDPALLAAYQ 48 (80)
T ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 34555566666666777888887765553
No 465
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.83 E-value=4.6e+02 Score=24.07 Aligned_cols=103 Identities=13% Similarity=0.080 Sum_probs=70.6
Q ss_pred CCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------------
Q 029199 63 GGDSQGVEEYYKKMVEE------------NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA---------------- 114 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~------------~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l---------------- 114 (197)
...|+++...|.-++.. .|-+...+..++.+... +|+.+-|....+++|=.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~-qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRF-QGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 47788898888887664 35567778888965555 99999888888777622
Q ss_pred -----CCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Q 029199 115 -----DPGDGEI---LSQYAKLVWELHNDQDRAATYYERAVHASPE-DSHVHASYAGFLWET 167 (197)
Q Consensus 115 -----~P~~~~~---~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~ 167 (197)
+|.|-.. ++.+-..+.+ .|-+..|.+++.-.+.++|. ||.+...+..+|.-.
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~-RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALr 390 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQ-RGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALR 390 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHH
Confidence 2223222 2222223334 33688999999999999998 888777666665543
No 466
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=28.31 E-value=97 Score=24.58 Aligned_cols=21 Identities=19% Similarity=0.086 Sum_probs=18.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCC
Q 029199 98 KQDLPKAEEYYSRAILADPGD 118 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~l~P~~ 118 (197)
.++...|+.++++|+++||+-
T Consensus 191 ~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 191 AETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred cccHHHHHHHHHHHHHhCCCC
Confidence 467889999999999999863
No 467
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.79 E-value=2.1e+02 Score=19.80 Aligned_cols=52 Identities=13% Similarity=0.106 Sum_probs=39.4
Q ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199 105 EEYYSRAILAD-PGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVH 157 (197)
Q Consensus 105 ~~~~~~al~l~-P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~ 157 (197)
++.++++-..+ |--|-++-.+|.+|...|+ -+.|..-|+.--++.|+.....
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~-~e~a~~eFetEKalFPES~~fm 109 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGK-DEQAVREFETEKALFPESGVFM 109 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCC-hHHHHHHHHHhhhhCccchhHH
Confidence 34455555443 5567788899999999886 6899999999888899876553
No 468
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=27.52 E-value=4.2e+02 Score=23.16 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=26.6
Q ss_pred HhCCCCHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 029199 113 LADPGDGEILSQYAKLV-WELHNDQDRAATYYERAVHASPEDSHVHA 158 (197)
Q Consensus 113 ~l~P~~~~~~~~lg~~l-~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 158 (197)
++.|.+-..-...|+.. ++.+ +|..|....++.|++.|....+..
T Consensus 293 ~LQp~H~~LaLr~AM~~~~K~K-Nf~tAa~FArRLLel~p~~~~a~q 338 (422)
T PF06957_consen 293 KLQPSHLILALRSAMSQAFKLK-NFITAASFARRLLELNPSPEVAEQ 338 (422)
T ss_dssp ---HHHHHHHHHHHHHHCCCTT-BHHHHHHHHHHHHCT--SCHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHcCCCHHHHHH
Confidence 33454444444444433 4445 599999999999999998765543
No 469
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=25.63 E-value=3.8e+02 Score=23.07 Aligned_cols=8 Identities=13% Similarity=0.152 Sum_probs=5.7
Q ss_pred HcCCcccc
Q 029199 166 ETEEDNDE 173 (197)
Q Consensus 166 ~~g~~~ea 173 (197)
.+|+|+.|
T Consensus 258 ~~~ry~da 265 (380)
T TIGR02710 258 TQGRYDDA 265 (380)
T ss_pred HccCHHHH
Confidence 56777776
No 470
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.49 E-value=1.1e+02 Score=29.46 Aligned_cols=21 Identities=29% Similarity=0.072 Sum_probs=15.7
Q ss_pred CcchhHHHHHHHHhhhcCccc
Q 029199 3 GTALSEEVKVMEALWNAGFEQ 23 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~ 23 (197)
|-.+..+||+.+|++.|...+
T Consensus 998 gy~ltt~gKf~eAie~Frsii 1018 (1202)
T KOG0292|consen 998 GYKLTTEGKFGEAIEKFRSII 1018 (1202)
T ss_pred HHhhhccCcHHHHHHHHHHHH
Confidence 455677889999999986544
No 471
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.03 E-value=2.5e+02 Score=25.16 Aligned_cols=46 Identities=26% Similarity=0.294 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 029199 88 SNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHN 134 (197)
Q Consensus 88 ~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~ 134 (197)
..++.--+. .|+|.=+.+...+++--+|+|..+....+.++-++|-
T Consensus 456 l~la~ea~~-kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgY 501 (655)
T COG2015 456 LELAREAFD-KGDYRWAAELLNQAVFADPGNKAARELQADALEQLGY 501 (655)
T ss_pred HHHHHHHHh-cccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhh
Confidence 445656676 8999999999999999999999999999999988883
No 472
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=24.23 E-value=2.8e+02 Score=20.00 Aligned_cols=57 Identities=16% Similarity=0.095 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 029199 89 NYAQFLYQSKQDLPKAEEYYSRAILADPG---------------DGEILSQYAKLVWELHNDQDRAATYYERAV 147 (197)
Q Consensus 89 ~la~~l~~~~g~~~~A~~~~~~al~l~P~---------------~~~~~~~lg~~l~~~~~~~~~A~~~~~~al 147 (197)
.+|...++ .+++=.++-+|++|+.+.-+ ......|++.+...+| |.+=.+++++-|.
T Consensus 6 llAd~a~~-~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~g-d~~yELkYLqlAS 77 (140)
T PF10952_consen 6 LLADQAFK-EADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQG-DSDYELKYLQLAS 77 (140)
T ss_pred HHHHHHhh-cccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcC-ChHHHHHHHHHHH
Confidence 34444444 55555555555555544211 0122456777766655 5677777775543
No 473
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=23.61 E-value=3.3e+02 Score=23.15 Aligned_cols=49 Identities=18% Similarity=0.091 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 029199 103 KAEEYYSRAILADPG---DGEILSQYAKLVWELHNDQDRAATYYERAVHASPE 152 (197)
Q Consensus 103 ~A~~~~~~al~l~P~---~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~ 152 (197)
+....+...++.-|+ .+-+|.=++.++-..| .+++.+..|++|+.....
T Consensus 121 ei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~-~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 121 EILATLSDLIKNIPDAKKLAKYWICLARLEPRTG-PIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHcCCC
Confidence 334444444444442 2344555555555544 355666666666665543
No 474
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=23.41 E-value=8.4e+02 Score=27.75 Aligned_cols=102 Identities=11% Similarity=0.090 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------------------------CCHH
Q 029199 65 DSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADP------------------------GDGE 120 (197)
Q Consensus 65 ~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P------------------------~~~~ 120 (197)
....++-.|-+..+...-...+.+.|..++-.-+...++|..-+++=++..= ..++
T Consensus 2734 e~A~~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~ae 2813 (3550)
T KOG0889|consen 2734 ELAWAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAE 2813 (3550)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHH
Confidence 3445555666666644444445666666665555666666554443332211 1234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 029199 121 ILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWET 167 (197)
Q Consensus 121 ~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 167 (197)
.....|.++.++++ .++|-..|..|++++-.-+.+|...|..+.+.
T Consensus 2814 ff~lkG~f~~kL~~-~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~ 2859 (3550)
T KOG0889|consen 2814 FFTLKGMFLEKLGK-FEEANKAFSAAVQIDDGLGKAWAEWGKYLDNR 2859 (3550)
T ss_pred HHHhhhHHHHHhcC-cchhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45566888889886 89999999999999988899999999876654
No 475
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.34 E-value=3.7e+02 Score=23.55 Aligned_cols=83 Identities=14% Similarity=0.058 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHH
Q 029199 61 GSGGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADP---------GDGEILSQYAKL 128 (197)
Q Consensus 61 ~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P---------~~~~~~~~lg~~ 128 (197)
...|+++.|+++|-++-..-.+- ...|.|+-.+-.. +|+|..-..+..+|.+. | -.+.+...-|.+
T Consensus 161 ~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~-~~nw~hv~sy~~~A~st-~~~~~~~~q~v~~kl~C~agLa 238 (466)
T KOG0686|consen 161 LDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIY-MGNWGHVLSYISKAEST-PDANENLAQEVPAKLKCAAGLA 238 (466)
T ss_pred HHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHh-hcchhhhhhHHHHHHhC-chhhhhHHHhcCcchHHHHHHH
Confidence 33466666666666644433332 2233344333333 45555444444444332 1 011233333444
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 029199 129 VWELHNDQDRAATYYERA 146 (197)
Q Consensus 129 l~~~~~~~~~A~~~~~~a 146 (197)
...++. ++.|..+|-.+
T Consensus 239 ~L~lkk-yk~aa~~fL~~ 255 (466)
T KOG0686|consen 239 NLLLKK-YKSAAKYFLLA 255 (466)
T ss_pred HHHHHH-HHHHHHHHHhC
Confidence 444443 56666655444
No 476
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=23.12 E-value=28 Score=31.24 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HhCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 029199 69 VEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAI--LADPGD-GEILSQYAKLVWELHNDQDRAATYYER 145 (197)
Q Consensus 69 A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al--~l~P~~-~~~~~~lg~~l~~~~~~~~~A~~~~~~ 145 (197)
|..+++++-+..+....-|...+.-.+...|++..|...+.+.- .+.|.. .......+.+....+ +.++|+..+..
T Consensus 8 A~~yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~-~~~~Al~~L~~ 86 (536)
T PF04348_consen 8 AEQYLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQG-DPEQALSLLNA 86 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcC-CHHHHHHHhcc
Confidence 44445555555554444444333233333778888877777655 333322 233344455555545 47777777763
Q ss_pred H--HHhCC-CCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 146 A--VHASP-EDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 146 a--l~~~p-~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
. ..+.+ .....+..++.++...|+.-++...+-.+
T Consensus 87 ~~~~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l 124 (536)
T PF04348_consen 87 QDLWQLPPEQQARYHQLRAQAYEQQGDPLAAARERIAL 124 (536)
T ss_dssp --------------------------------------
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1 11111 12233455666777777777765544443
No 477
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=22.68 E-value=1.3e+02 Score=25.69 Aligned_cols=52 Identities=19% Similarity=0.103 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCcccccc
Q 029199 123 SQYAKLVWELHNDQDRAATYYERAVHAS--------PEDSHVHASYAGFLWETEEDNDECD 175 (197)
Q Consensus 123 ~~lg~~l~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~ea~~ 175 (197)
...|.-.+.++ ++++|...|..|..+. -++.++++.+|..+.++++...++.
T Consensus 45 v~~G~~~~~~~-d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 45 VQAGRRALCNN-DIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred HHhhhHHHhcc-cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555556 6899999998888764 2456788999999999998888643
No 478
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=22.38 E-value=1.5e+02 Score=27.80 Aligned_cols=62 Identities=15% Similarity=0.009 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQY 125 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~l 125 (197)
.|++..++.--.-++...|....+++..+..|.. .++++-|.+...-....+|.++.+....
T Consensus 106 l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~a-l~k~d~a~rdl~i~~~~~p~~~~~~eif 167 (748)
T KOG4151|consen 106 LGEYPKAIPECELALESQPRISKALLKRARKYEA-LNKLDLAVRDLRIVEKMDPSNVSASEIF 167 (748)
T ss_pred ccchhhhcCchhhhhhccchHHHHHhhhhhHHHH-HHHHHHHHHHHHHHhcCCCCcchHHHHH
Confidence 5899999999999999999999999998866665 8889999999888889999997665533
No 479
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=22.15 E-value=1.1e+02 Score=26.96 Aligned_cols=56 Identities=11% Similarity=0.096 Sum_probs=44.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 124 QYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 124 ~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.+=.+|++.|+ ..+|++.-..-+-.+|++-.+..++-+....+|.-++-..+.++-
T Consensus 138 YL~~ay~k~~~-l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~s~d~l~DlE~~ 193 (471)
T KOG4459|consen 138 YLQFAYFKVGE-LEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGVSEDELTDLERR 193 (471)
T ss_pred HHHHHHHHhhh-HHHHHHhcceeeecCCcHHHHHHHHHHHHhccCCCcccccccccc
Confidence 34456788886 899999988888889999999999988888888777777666664
No 480
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=22.00 E-value=4.5e+02 Score=21.58 Aligned_cols=87 Identities=16% Similarity=0.122 Sum_probs=62.2
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 029199 79 ENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHA 158 (197)
Q Consensus 79 ~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 158 (197)
++++-+.+....+.++.+ .---++|+..+-..+..+ ++.+....+.++-+++. ..|+..+.+.|.-..++|.+..
T Consensus 164 ld~t~~l~~Ry~amF~LR-n~g~EeaI~al~~~l~~~--SalfrhEvAfVfGQl~s--~~ai~~L~k~L~d~~E~pMVRh 238 (289)
T KOG0567|consen 164 LDETKPLFERYRAMFYLR-NIGTEEAINALIDGLADD--SALFRHEVAFVFGQLQS--PAAIPSLIKVLLDETEHPMVRH 238 (289)
T ss_pred HhcchhHHHHHhhhhHhh-ccCcHHHHHHHHHhcccc--hHHHHHHHHHHHhhccc--hhhhHHHHHHHHhhhcchHHHH
Confidence 344445554445645444 344488888888888765 67777777777766663 6899999999998889998888
Q ss_pred HHHHHHHHcCCc
Q 029199 159 SYAGFLWETEED 170 (197)
Q Consensus 159 ~la~~~~~~g~~ 170 (197)
--+..+...++.
T Consensus 239 EaAeALGaIa~e 250 (289)
T KOG0567|consen 239 EAAEALGAIADE 250 (289)
T ss_pred HHHHHHHhhcCH
Confidence 888888777653
No 481
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=21.78 E-value=2.7e+02 Score=18.88 Aligned_cols=34 Identities=12% Similarity=0.074 Sum_probs=23.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199 90 YAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQY 125 (197)
Q Consensus 90 la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~l 125 (197)
-|.+-+. .|++.+|++...++-+. .++|...+.+
T Consensus 65 ~Gl~al~-~G~~~~A~k~~~~a~~~-~~~~~l~~L~ 98 (108)
T PF07219_consen 65 RGLIALA-EGDWQRAEKLLAKAAKL-SDNPLLNYLL 98 (108)
T ss_pred HHHHHHH-CCCHHHHHHHHHHHHhc-CCCHHHHHHH
Confidence 4544455 89999999999999765 4455544443
No 482
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=21.55 E-value=2.3e+02 Score=18.09 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhC
Q 029199 67 QGVEEYYKKMVEEN 80 (197)
Q Consensus 67 ~~A~~~~~~al~~~ 80 (197)
..|+.+..+|++.|
T Consensus 4 ~~a~~l~~~Ave~D 17 (77)
T cd02683 4 LAAKEVLKRAVELD 17 (77)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555666655443
No 483
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=21.07 E-value=1e+02 Score=28.71 Aligned_cols=106 Identities=18% Similarity=0.083 Sum_probs=49.8
Q ss_pred CCCCCHHHHHHH----------HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 029199 61 GSGGDSQGVEEY----------YKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVW 130 (197)
Q Consensus 61 ~~~g~~~~A~~~----------~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~ 130 (197)
-+.|+.++|+.. ++-+-+++-.+-+.+..++..+ ++...+.-|.+.|.+.=.. -.+-.+..
T Consensus 714 iSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~yl-k~l~~~gLAaeIF~k~gD~--------ksiVqlHv 784 (1081)
T KOG1538|consen 714 ISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYL-KKLDSPGLAAEIFLKMGDL--------KSLVQLHV 784 (1081)
T ss_pred hcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHH-hhccccchHHHHHHHhccH--------HHHhhhee
Confidence 345777666543 3334445555555555555332 2255555555555443211 11112333
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 131 ELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 131 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
..+ ++++|...-++--+.- +++|+-+|..+.+..+++||.+.|.+
T Consensus 785 e~~-~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 785 ETQ-RWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred ecc-cchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHH
Confidence 444 3666655544432222 23555566555555555555444443
Done!