Query 029199
Match_columns 197
No_of_seqs 224 out of 2347
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 14:44:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029199.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029199hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pl2_A Hypothetical conserved 99.9 4.5E-25 1.5E-29 170.6 9.8 155 3-180 12-177 (217)
2 3vtx_A MAMA; tetratricopeptide 99.9 2.4E-24 8.3E-29 160.9 11.6 156 3-180 12-167 (184)
3 4ga2_A E3 SUMO-protein ligase 99.9 4.7E-24 1.6E-28 156.1 12.6 145 3-169 4-149 (150)
4 4gyw_A UDP-N-acetylglucosamine 99.9 1.6E-24 5.4E-29 194.8 11.8 156 3-180 16-171 (723)
5 2pl2_A Hypothetical conserved 99.9 2.8E-24 9.7E-29 166.1 10.2 166 3-180 46-211 (217)
6 2h6f_A Protein farnesyltransfe 99.9 7.2E-24 2.5E-28 177.8 6.9 155 3-179 104-265 (382)
7 4gco_A Protein STI-1; structur 99.9 3.1E-22 1.1E-26 142.5 13.3 120 23-164 6-125 (126)
8 4ga2_A E3 SUMO-protein ligase 99.9 1.5E-22 5E-27 148.2 6.6 121 57-179 4-125 (150)
9 2h6f_A Protein farnesyltransfe 99.9 5.9E-23 2E-27 172.3 4.7 158 2-180 137-302 (382)
10 3gyz_A Chaperone protein IPGC; 99.9 3.4E-21 1.2E-25 141.7 13.3 127 6-154 12-138 (151)
11 4i17_A Hypothetical protein; T 99.9 1.7E-22 5.9E-27 155.8 6.0 147 2-170 13-169 (228)
12 4gyw_A UDP-N-acetylglucosamine 99.9 1.3E-21 4.4E-26 175.9 12.3 135 24-180 3-137 (723)
13 3as5_A MAMA; tetratricopeptide 99.8 1.7E-20 5.9E-25 138.0 13.8 156 3-180 15-170 (186)
14 3urz_A Uncharacterized protein 99.8 3.8E-22 1.3E-26 153.1 3.5 157 2-180 10-183 (208)
15 1w3b_A UDP-N-acetylglucosamine 99.8 1.4E-20 4.6E-25 155.6 11.1 152 6-179 179-330 (388)
16 4eqf_A PEX5-related protein; a 99.8 4.6E-21 1.6E-25 157.0 7.8 176 3-180 106-307 (365)
17 2pzi_A Probable serine/threoni 99.8 4.6E-21 1.6E-25 171.3 8.2 150 9-181 404-561 (681)
18 3gyz_A Chaperone protein IPGC; 99.8 2.8E-21 9.6E-26 142.2 5.6 108 71-180 23-130 (151)
19 1w3b_A UDP-N-acetylglucosamine 99.8 8.7E-21 3E-25 156.8 9.2 152 7-180 146-297 (388)
20 2q7f_A YRRB protein; TPR, prot 99.8 5.7E-20 1.9E-24 141.5 12.5 176 2-179 29-218 (243)
21 4abn_A Tetratricopeptide repea 99.8 2.6E-21 8.8E-26 166.0 4.6 174 4-179 110-317 (474)
22 4abn_A Tetratricopeptide repea 99.8 2E-20 6.8E-25 160.5 9.4 141 3-146 144-318 (474)
23 4gco_A Protein STI-1; structur 99.8 2.4E-20 8.3E-25 132.6 8.3 104 75-180 4-107 (126)
24 3vtx_A MAMA; tetratricopeptide 99.8 1.5E-19 5.1E-24 134.7 13.0 131 28-180 3-133 (184)
25 2q7f_A YRRB protein; TPR, prot 99.8 6.3E-20 2.2E-24 141.3 11.1 104 63-168 138-241 (243)
26 2vgx_A Chaperone SYCD; alterna 99.8 3.6E-20 1.2E-24 135.2 8.8 125 17-163 8-132 (148)
27 4eqf_A PEX5-related protein; a 99.8 5.6E-20 1.9E-24 150.6 10.8 156 3-180 72-273 (365)
28 1fch_A Peroxisomal targeting s 99.8 1.5E-19 5.3E-24 147.3 13.3 154 3-179 189-355 (368)
29 2r5s_A Uncharacterized protein 99.8 7E-21 2.4E-25 142.0 4.8 155 3-179 13-169 (176)
30 4i17_A Hypothetical protein; T 99.8 2.6E-19 8.9E-24 137.9 13.7 133 26-180 3-143 (228)
31 2xcb_A PCRH, regulatory protei 99.8 7.8E-20 2.7E-24 131.9 9.8 130 17-168 5-134 (142)
32 2vq2_A PILW, putative fimbrial 99.8 7.6E-20 2.6E-24 138.8 9.6 156 3-180 15-173 (225)
33 3uq3_A Heat shock protein STI1 99.8 3.6E-20 1.2E-24 143.4 7.5 156 3-180 45-233 (258)
34 3cv0_A Peroxisome targeting si 99.8 3.5E-19 1.2E-23 142.4 13.5 156 3-180 144-312 (327)
35 3urz_A Uncharacterized protein 99.8 3.1E-19 1.1E-23 136.8 11.9 130 29-180 3-150 (208)
36 3upv_A Heat shock protein STI1 99.8 1E-18 3.4E-23 122.9 13.3 119 27-167 1-125 (126)
37 3mkr_A Coatomer subunit epsilo 99.8 2.7E-19 9.1E-24 144.4 11.5 172 7-180 76-261 (291)
38 3hym_B Cell division cycle pro 99.8 1.3E-19 4.5E-24 145.1 9.4 175 4-180 98-296 (330)
39 2vsy_A XCC0866; transferase, g 99.8 3.4E-19 1.2E-23 155.3 12.8 150 9-180 2-154 (568)
40 2ho1_A Type 4 fimbrial biogene 99.8 1.4E-19 4.9E-24 140.5 8.8 156 3-180 44-201 (252)
41 3hym_B Cell division cycle pro 99.8 1.8E-19 6.2E-24 144.3 9.6 155 4-180 64-219 (330)
42 1p5q_A FKBP52, FK506-binding p 99.8 1.8E-19 6.3E-24 148.1 9.7 143 10-174 127-284 (336)
43 2vgx_A Chaperone SYCD; alterna 99.8 8.8E-20 3E-24 133.1 6.4 109 70-180 7-115 (148)
44 2fbn_A 70 kDa peptidylprolyl i 99.8 4.5E-19 1.5E-23 134.3 10.4 156 3-180 11-183 (198)
45 2pzi_A Probable serine/threoni 99.8 1.9E-20 6.6E-25 167.2 2.9 144 3-169 440-583 (681)
46 2vyi_A SGTA protein; chaperone 99.8 4.4E-18 1.5E-22 118.3 14.1 126 24-171 6-131 (131)
47 1fch_A Peroxisomal targeting s 99.8 9.9E-19 3.4E-23 142.5 11.9 175 3-179 71-310 (368)
48 3uq3_A Heat shock protein STI1 99.8 1.9E-19 6.4E-24 139.4 7.1 155 3-180 12-199 (258)
49 3ieg_A DNAJ homolog subfamily 99.8 3.8E-19 1.3E-23 143.5 8.9 156 3-180 10-180 (359)
50 3sz7_A HSC70 cochaperone (SGT) 99.8 2.9E-18 9.8E-23 126.1 12.6 121 24-166 5-125 (164)
51 3cv0_A Peroxisome targeting si 99.8 1.1E-18 3.9E-23 139.4 11.0 176 3-180 62-266 (327)
52 2yhc_A BAMD, UPF0169 lipoprote 99.8 4.2E-19 1.4E-23 137.4 8.0 157 3-180 11-210 (225)
53 1xnf_A Lipoprotein NLPI; TPR, 99.8 9.1E-19 3.1E-23 137.1 9.9 154 3-179 12-169 (275)
54 2ho1_A Type 4 fimbrial biogene 99.8 6.9E-19 2.4E-23 136.7 9.1 156 3-180 78-235 (252)
55 3u4t_A TPR repeat-containing p 99.8 6.8E-19 2.3E-23 138.0 8.8 175 3-180 10-205 (272)
56 3qky_A Outer membrane assembly 99.8 3E-19 1E-23 140.6 6.4 156 3-180 22-221 (261)
57 3ieg_A DNAJ homolog subfamily 99.8 2.6E-18 8.9E-23 138.6 11.8 175 4-180 128-332 (359)
58 2y4t_A DNAJ homolog subfamily 99.8 2.1E-18 7.1E-23 144.4 11.4 156 3-180 33-203 (450)
59 2ond_A Cleavage stimulation fa 99.8 2.4E-18 8.2E-23 139.1 11.1 157 3-180 71-229 (308)
60 3u4t_A TPR repeat-containing p 99.8 3E-19 1E-23 140.0 5.6 115 63-180 16-134 (272)
61 3qou_A Protein YBBN; thioredox 99.8 2.1E-19 7.3E-24 144.5 4.4 113 64-178 131-279 (287)
62 2vq2_A PILW, putative fimbrial 99.8 2.8E-18 9.5E-23 130.1 10.2 156 3-180 49-208 (225)
63 2xcb_A PCRH, regulatory protei 99.8 9.2E-19 3.1E-23 126.2 6.9 108 71-180 5-112 (142)
64 2xpi_A Anaphase-promoting comp 99.8 2.2E-18 7.6E-23 149.3 10.6 175 4-180 381-576 (597)
65 2y4t_A DNAJ homolog subfamily 99.8 1.5E-18 5E-23 145.3 9.2 176 3-180 150-355 (450)
66 2lni_A Stress-induced-phosphop 99.8 9.3E-18 3.2E-22 117.4 11.6 123 25-169 11-133 (133)
67 3fp2_A TPR repeat-containing p 99.8 3.2E-18 1.1E-22 146.1 10.8 155 3-180 250-404 (537)
68 2xpi_A Anaphase-promoting comp 99.7 5E-18 1.7E-22 147.0 11.1 116 63-180 386-501 (597)
69 2e2e_A Formate-dependent nitri 99.7 5.3E-18 1.8E-22 125.8 9.5 116 63-180 23-141 (177)
70 2e2e_A Formate-dependent nitri 99.7 6.1E-18 2.1E-22 125.4 9.7 101 59-160 53-155 (177)
71 3mkr_A Coatomer subunit epsilo 99.7 3.7E-18 1.3E-22 137.7 9.2 110 63-177 179-288 (291)
72 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 1.9E-18 6.5E-23 147.7 7.8 142 11-174 249-405 (457)
73 3q49_B STIP1 homology and U bo 99.7 1.8E-17 6.3E-22 117.3 11.5 127 24-172 3-134 (137)
74 1hxi_A PEX5, peroxisome target 99.7 1.9E-17 6.3E-22 116.7 11.1 91 63-155 30-120 (121)
75 1zu2_A Mitochondrial import re 99.7 2E-17 6.8E-22 122.0 11.6 100 63-163 15-134 (158)
76 1na0_A Designed protein CTPR3; 99.7 1.4E-16 4.9E-21 109.6 15.4 121 26-168 4-125 (125)
77 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.1E-17 3.9E-22 130.8 10.7 155 3-180 50-241 (275)
78 3qky_A Outer membrane assembly 99.7 1.6E-17 5.5E-22 130.6 10.9 136 23-180 8-174 (261)
79 1a17_A Serine/threonine protei 99.7 3.4E-17 1.2E-21 118.9 11.8 116 63-180 26-143 (166)
80 3rkv_A Putative peptidylprolyl 99.7 2.1E-17 7.3E-22 121.2 10.7 124 29-174 10-152 (162)
81 2gw1_A Mitochondrial precursor 99.7 3E-18 1E-22 145.1 6.9 174 5-180 279-475 (514)
82 3k9i_A BH0479 protein; putativ 99.7 1.7E-17 5.7E-22 115.7 9.0 108 63-172 3-113 (117)
83 2fo7_A Synthetic consensus TPR 99.7 9E-17 3.1E-21 111.7 12.2 116 63-180 14-129 (136)
84 1p5q_A FKBP52, FK506-binding p 99.7 9E-19 3.1E-23 144.0 2.1 165 3-180 72-256 (336)
85 2dba_A Smooth muscle cell asso 99.7 3E-16 1E-20 111.7 14.8 121 25-167 23-146 (148)
86 2hr2_A Hypothetical protein; a 99.7 2.4E-17 8.1E-22 121.7 9.0 112 30-163 11-145 (159)
87 1elw_A TPR1-domain of HOP; HOP 99.7 3.3E-16 1.1E-20 106.9 14.1 101 63-165 17-117 (118)
88 1wao_1 Serine/threonine protei 99.7 1.4E-16 4.7E-21 137.0 14.9 118 59-178 15-134 (477)
89 1qqe_A Vesicular transport pro 99.7 3.5E-18 1.2E-22 137.4 4.5 156 3-180 44-225 (292)
90 3fp2_A TPR repeat-containing p 99.7 9.7E-18 3.3E-22 143.1 6.0 154 5-180 319-488 (537)
91 3upv_A Heat shock protein STI1 99.7 9.9E-17 3.4E-21 112.6 10.1 98 81-180 1-98 (126)
92 2r5s_A Uncharacterized protein 99.7 1.3E-17 4.3E-22 124.2 5.6 115 63-180 19-134 (176)
93 1hh8_A P67PHOX, NCF-2, neutrop 99.7 2E-16 6.7E-21 120.0 12.3 140 3-167 13-168 (213)
94 2ond_A Cleavage stimulation fa 99.7 4.9E-17 1.7E-21 131.4 9.2 153 13-180 33-195 (308)
95 4g1t_A Interferon-induced prot 99.7 1.2E-17 4.2E-22 140.8 5.9 160 3-180 101-273 (472)
96 4gcn_A Protein STI-1; structur 99.7 2.5E-16 8.5E-21 111.7 11.3 96 63-161 21-123 (127)
97 3qou_A Protein YBBN; thioredox 99.7 7.2E-17 2.5E-21 129.6 9.3 100 79-180 112-245 (287)
98 1dce_A Protein (RAB geranylger 99.7 1.1E-16 3.7E-21 140.4 9.8 150 3-172 70-244 (567)
99 2gw1_A Mitochondrial precursor 99.7 1E-17 3.5E-22 141.8 3.1 155 3-180 244-398 (514)
100 2fo7_A Synthetic consensus TPR 99.7 2.8E-16 9.5E-21 109.1 9.8 129 3-153 8-136 (136)
101 2xev_A YBGF; tetratricopeptide 99.7 2.2E-15 7.5E-20 105.4 14.2 106 63-170 15-126 (129)
102 4gcn_A Protein STI-1; structur 99.7 7.8E-17 2.7E-21 114.4 6.6 97 82-180 6-109 (127)
103 2l6j_A TPR repeat-containing p 99.7 8.5E-16 2.9E-20 104.6 11.6 97 83-181 3-105 (111)
104 3as5_A MAMA; tetratricopeptide 99.7 5.8E-16 2E-20 113.5 11.3 116 63-180 21-136 (186)
105 2kck_A TPR repeat; tetratricop 99.7 8.9E-16 3.1E-20 103.9 11.1 106 26-153 2-110 (112)
106 1hh8_A P67PHOX, NCF-2, neutrop 99.7 7.3E-16 2.5E-20 116.8 11.8 113 63-180 19-147 (213)
107 3sz7_A HSC70 cochaperone (SGT) 99.7 5.2E-16 1.8E-20 113.9 10.2 99 80-180 7-105 (164)
108 4g1t_A Interferon-induced prot 99.7 5.1E-17 1.7E-21 137.0 5.4 170 10-180 152-360 (472)
109 2vsy_A XCC0866; transferase, g 99.7 3.8E-16 1.3E-20 136.0 10.9 137 3-161 30-169 (568)
110 1elr_A TPR2A-domain of HOP; HO 99.7 1E-15 3.5E-20 106.3 10.9 106 63-171 17-129 (131)
111 3q49_B STIP1 homology and U bo 99.7 1.3E-15 4.5E-20 107.6 11.5 101 78-180 3-103 (137)
112 3dra_A Protein farnesyltransfe 99.7 3.8E-16 1.3E-20 127.2 9.8 154 3-174 74-240 (306)
113 1hxi_A PEX5, peroxisome target 99.7 3.8E-16 1.3E-20 109.9 8.5 93 86-180 19-111 (121)
114 3edt_B KLC 2, kinesin light ch 99.6 4.5E-17 1.5E-21 127.1 3.9 156 3-180 50-278 (283)
115 3dra_A Protein farnesyltransfe 99.6 4.4E-16 1.5E-20 126.9 9.7 147 13-179 50-211 (306)
116 2if4_A ATFKBP42; FKBP-like, al 99.6 1E-16 3.4E-21 131.9 5.6 117 62-180 191-325 (338)
117 2hr2_A Hypothetical protein; a 99.6 4.9E-16 1.7E-20 114.7 8.5 95 84-180 11-128 (159)
118 2kck_A TPR repeat; tetratricop 99.6 5E-16 1.7E-20 105.2 7.6 100 79-180 1-103 (112)
119 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 2.1E-17 7.1E-22 141.3 0.7 159 10-180 200-377 (457)
120 1qqe_A Vesicular transport pro 99.6 9.8E-17 3.3E-21 128.9 4.5 157 3-181 84-267 (292)
121 1ihg_A Cyclophilin 40; ppiase 99.6 9.2E-16 3.1E-20 127.9 10.3 112 63-176 236-363 (370)
122 2c2l_A CHIP, carboxy terminus 99.6 1.3E-15 4.4E-20 122.0 10.3 105 27-153 1-105 (281)
123 1dce_A Protein (RAB geranylger 99.6 3.6E-16 1.2E-20 137.1 7.1 137 13-170 46-194 (567)
124 2yhc_A BAMD, UPF0169 lipoprote 99.6 1.6E-15 5.6E-20 117.1 8.7 131 29-180 3-173 (225)
125 3edt_B KLC 2, kinesin light ch 99.6 5.4E-16 1.8E-20 121.0 5.6 149 10-180 22-195 (283)
126 1a17_A Serine/threonine protei 99.6 4.4E-15 1.5E-19 107.6 9.8 125 3-149 20-146 (166)
127 3nf1_A KLC 1, kinesin light ch 99.6 2.1E-16 7.2E-21 125.3 2.8 156 3-180 76-304 (311)
128 3ulq_A Response regulator aspa 99.6 2.7E-16 9.3E-21 130.0 3.2 157 2-180 109-290 (383)
129 3nf1_A KLC 1, kinesin light ch 99.6 1.7E-16 5.8E-21 125.8 1.8 156 3-180 34-221 (311)
130 2fbn_A 70 kDa peptidylprolyl i 99.6 3.8E-16 1.3E-20 118.1 3.6 124 55-180 9-148 (198)
131 1ouv_A Conserved hypothetical 99.6 6.3E-15 2.2E-19 116.1 10.5 150 3-179 13-175 (273)
132 1zu2_A Mitochondrial import re 99.6 1.3E-15 4.4E-20 112.3 6.0 108 4-122 10-128 (158)
133 2kat_A Uncharacterized protein 99.6 2E-14 7E-19 99.2 11.7 102 68-171 3-106 (115)
134 3dss_A Geranylgeranyl transfer 99.6 6.5E-15 2.2E-19 121.0 10.7 136 12-167 90-240 (331)
135 3dss_A Geranylgeranyl transfer 99.6 5E-15 1.7E-19 121.7 9.9 145 13-168 47-193 (331)
136 2ooe_A Cleavage stimulation fa 99.6 2.5E-15 8.4E-20 129.7 8.4 146 14-180 304-451 (530)
137 3q7a_A Farnesyltransferase alp 99.6 1.5E-15 5.1E-20 125.5 5.9 137 11-169 69-216 (349)
138 3rkv_A Putative peptidylprolyl 99.6 9.3E-15 3.2E-19 106.9 9.2 96 83-180 10-123 (162)
139 1na3_A Designed protein CTPR2; 99.6 6.4E-14 2.2E-18 91.9 11.7 85 82-168 7-91 (91)
140 2qfc_A PLCR protein; TPR, HTH, 99.6 1.4E-14 4.7E-19 116.0 9.9 152 6-179 85-262 (293)
141 1elw_A TPR1-domain of HOP; HOP 99.6 4.7E-14 1.6E-18 96.0 11.0 96 83-180 3-98 (118)
142 2lni_A Stress-induced-phosphop 99.5 1.3E-14 4.4E-19 101.2 8.0 110 3-133 23-132 (133)
143 1wao_1 Serine/threonine protei 99.5 1.8E-15 6.1E-20 130.1 3.8 131 2-154 12-155 (477)
144 1ouv_A Conserved hypothetical 99.5 2.7E-14 9.2E-19 112.5 10.0 144 9-179 55-211 (273)
145 3rjv_A Putative SEL1 repeat pr 99.5 1.5E-14 5E-19 111.1 8.1 155 3-180 25-194 (212)
146 2vyi_A SGTA protein; chaperone 99.5 3.4E-14 1.1E-18 98.3 8.6 101 78-180 6-106 (131)
147 3u3w_A Transcriptional activat 99.5 1.2E-14 4.2E-19 116.3 7.2 151 7-179 86-262 (293)
148 2dba_A Smooth muscle cell asso 99.5 3.9E-14 1.3E-18 100.7 9.1 101 78-180 22-125 (148)
149 1na0_A Designed protein CTPR3; 99.5 9.9E-14 3.4E-18 95.1 10.8 100 79-180 3-103 (125)
150 4a1s_A PINS, partner of inscut 99.5 2E-15 6.8E-20 124.9 1.9 156 3-180 55-249 (411)
151 2c2l_A CHIP, carboxy terminus 99.5 6.8E-14 2.3E-18 111.9 10.6 98 81-180 1-98 (281)
152 2if4_A ATFKBP42; FKBP-like, al 99.5 1.4E-15 4.8E-20 125.1 0.2 132 3-155 186-334 (338)
153 2xev_A YBGF; tetratricopeptide 99.5 6.9E-14 2.4E-18 97.6 8.5 94 85-180 3-102 (129)
154 3q7a_A Farnesyltransferase alp 99.5 3.3E-14 1.1E-18 117.5 7.7 148 3-170 95-258 (349)
155 3sf4_A G-protein-signaling mod 99.5 4.3E-15 1.5E-19 121.9 2.2 147 12-180 163-333 (406)
156 2ifu_A Gamma-SNAP; membrane fu 99.5 3.3E-15 1.1E-19 120.7 1.4 155 3-180 43-221 (307)
157 2ooe_A Cleavage stimulation fa 99.5 5.1E-14 1.7E-18 121.5 8.8 152 14-180 256-417 (530)
158 1elr_A TPR2A-domain of HOP; HO 99.5 8.1E-14 2.8E-18 96.5 8.2 98 81-180 1-105 (131)
159 3q15_A PSP28, response regulat 99.5 5.1E-15 1.8E-19 122.4 2.3 157 2-180 107-287 (378)
160 3sf4_A G-protein-signaling mod 99.5 7.3E-15 2.5E-19 120.5 1.7 155 3-179 16-212 (406)
161 3ro2_A PINS homolog, G-protein 99.5 7.4E-15 2.5E-19 116.7 1.4 157 2-180 11-209 (338)
162 3gw4_A Uncharacterized protein 99.5 2.8E-14 9.6E-19 106.8 4.5 150 8-180 4-173 (203)
163 3ma5_A Tetratricopeptide repea 99.5 6.2E-13 2.1E-17 90.1 10.4 90 79-170 2-93 (100)
164 4a1s_A PINS, partner of inscut 99.4 4.3E-15 1.5E-19 122.9 -2.1 156 3-180 93-289 (411)
165 3ulq_A Response regulator aspa 99.4 2.4E-14 8.2E-19 118.3 2.3 154 3-178 150-330 (383)
166 4f3v_A ESX-1 secretion system 99.4 3.8E-13 1.3E-17 108.0 8.7 140 4-167 110-254 (282)
167 3k9i_A BH0479 protein; putativ 99.4 1.3E-13 4.5E-18 95.7 5.1 98 8-126 2-102 (117)
168 3ro2_A PINS homolog, G-protein 99.4 1.9E-14 6.5E-19 114.3 0.9 147 12-180 159-329 (338)
169 4f3v_A ESX-1 secretion system 99.4 1.9E-14 6.6E-19 115.6 -0.1 169 3-180 54-234 (282)
170 3e4b_A ALGK; tetratricopeptide 99.4 6.8E-13 2.3E-17 113.0 9.3 153 3-180 183-348 (452)
171 3rjv_A Putative SEL1 repeat pr 99.4 1.9E-13 6.5E-18 104.8 5.1 138 14-180 4-155 (212)
172 2l6j_A TPR repeat-containing p 99.4 2.3E-13 8E-18 92.3 4.7 95 29-145 3-103 (111)
173 1na3_A Designed protein CTPR2; 99.4 4E-12 1.4E-16 83.1 9.8 85 28-133 7-91 (91)
174 1ihg_A Cyclophilin 40; ppiase 99.4 4.7E-13 1.6E-17 111.4 6.1 118 3-142 230-363 (370)
175 3ro3_A PINS homolog, G-protein 99.4 6.6E-13 2.3E-17 94.7 5.7 115 63-179 22-154 (164)
176 2qfc_A PLCR protein; TPR, HTH, 99.3 1.9E-11 6.4E-16 97.7 13.3 117 62-180 87-222 (293)
177 2kc7_A BFR218_protein; tetratr 99.3 2E-12 6.9E-17 86.4 6.3 67 89-157 5-72 (99)
178 1hz4_A MALT regulatory protein 99.3 8.2E-13 2.8E-17 108.3 5.1 156 3-180 21-200 (373)
179 2ifu_A Gamma-SNAP; membrane fu 99.3 1.8E-12 6E-17 104.6 5.9 116 62-180 48-181 (307)
180 2kat_A Uncharacterized protein 99.3 6.1E-12 2.1E-16 86.6 7.4 77 103-180 3-79 (115)
181 3q15_A PSP28, response regulat 99.3 1.2E-12 4E-17 108.2 3.8 127 3-151 148-292 (378)
182 2xm6_A Protein corresponding t 99.3 1.3E-11 4.4E-16 105.4 9.8 109 64-180 310-429 (490)
183 3u64_A Protein TP_0956; tetrat 99.3 9.5E-12 3.3E-16 99.7 8.3 129 9-152 137-272 (301)
184 2kc7_A BFR218_protein; tetratr 99.3 1E-10 3.5E-15 78.0 11.6 84 61-154 11-95 (99)
185 3gw4_A Uncharacterized protein 99.3 1E-11 3.4E-16 92.7 7.2 116 62-180 4-133 (203)
186 3u3w_A Transcriptional activat 99.3 1.1E-11 3.8E-16 99.0 7.6 117 62-180 87-222 (293)
187 3ma5_A Tetratricopeptide repea 99.2 7.1E-11 2.4E-15 79.7 8.6 85 25-130 2-88 (100)
188 3ro3_A PINS homolog, G-protein 99.2 1E-11 3.4E-16 88.4 4.0 128 3-152 16-161 (164)
189 3e4b_A ALGK; tetratricopeptide 99.2 4.2E-11 1.4E-15 101.9 8.4 110 65-181 194-314 (452)
190 2xm6_A Protein corresponding t 99.2 1.1E-10 3.6E-15 99.7 10.1 145 9-179 56-212 (490)
191 1klx_A Cysteine rich protein B 99.2 1.6E-10 5.4E-15 82.9 9.4 108 64-180 9-123 (138)
192 3bee_A Putative YFRE protein; 99.1 3.7E-10 1.3E-14 75.8 9.7 73 80-154 2-77 (93)
193 1klx_A Cysteine rich protein B 99.1 1.7E-09 5.9E-14 77.4 13.8 124 8-162 7-137 (138)
194 1hz4_A MALT regulatory protein 99.1 7.8E-11 2.7E-15 96.4 7.1 156 3-180 60-241 (373)
195 1pc2_A Mitochondria fission pr 99.1 1.1E-09 3.9E-14 79.8 12.1 102 64-167 12-118 (152)
196 3mv2_B Coatomer subunit epsilo 99.1 9.5E-11 3.2E-15 95.2 6.1 151 3-180 107-279 (310)
197 3n71_A Histone lysine methyltr 99.0 1.7E-10 5.7E-15 99.5 5.6 117 62-180 321-461 (490)
198 2v5f_A Prolyl 4-hydroxylase su 99.0 8E-09 2.7E-13 70.3 11.6 81 83-165 4-91 (104)
199 3bee_A Putative YFRE protein; 99.0 2.3E-09 8E-14 71.9 7.8 77 26-120 2-78 (93)
200 3mv2_B Coatomer subunit epsilo 99.0 1.1E-09 3.9E-14 88.9 7.0 114 63-180 113-237 (310)
201 3ly7_A Transcriptional activat 98.9 4.4E-09 1.5E-13 87.1 9.2 114 64-179 213-335 (372)
202 1b89_A Protein (clathrin heavy 98.9 1.6E-09 5.5E-14 91.9 6.5 157 3-179 68-232 (449)
203 3qww_A SET and MYND domain-con 98.9 9.4E-09 3.2E-13 87.3 10.3 94 63-158 311-425 (433)
204 1xi4_A Clathrin heavy chain; a 98.9 8.3E-09 2.8E-13 97.3 9.9 142 3-179 1112-1305(1630)
205 3ly7_A Transcriptional activat 98.8 2.1E-08 7.2E-13 83.0 10.6 132 10-156 213-346 (372)
206 4e6h_A MRNA 3'-END-processing 98.8 3.8E-09 1.3E-13 94.3 5.2 117 63-180 391-530 (679)
207 3u64_A Protein TP_0956; tetrat 98.8 1.6E-08 5.5E-13 81.0 7.1 102 79-180 147-266 (301)
208 4b4t_Q 26S proteasome regulato 98.7 4.9E-09 1.7E-13 87.1 3.9 171 5-180 13-201 (434)
209 1xi4_A Clathrin heavy chain; a 98.7 9.1E-08 3.1E-12 90.4 12.2 102 63-179 1118-1246(1630)
210 4b4t_Q 26S proteasome regulato 98.7 1.2E-08 4.1E-13 84.7 5.6 155 3-179 62-241 (434)
211 1pc2_A Mitochondria fission pr 98.7 5.9E-08 2E-12 70.6 7.9 97 14-128 16-114 (152)
212 3qwp_A SET and MYND domain-con 98.7 6.9E-08 2.3E-12 81.8 9.5 103 63-167 300-426 (429)
213 2v5f_A Prolyl 4-hydroxylase su 98.6 2E-07 7E-12 63.2 9.1 65 63-128 18-89 (104)
214 1b89_A Protein (clathrin heavy 98.6 2.3E-07 7.7E-12 78.7 9.1 108 61-179 159-268 (449)
215 4e6h_A MRNA 3'-END-processing 98.5 2.8E-07 9.6E-12 82.3 9.0 141 18-180 331-496 (679)
216 3n71_A Histone lysine methyltr 98.5 2.1E-07 7.2E-12 80.1 7.6 83 97-180 321-419 (490)
217 1nzn_A CGI-135 protein, fissio 98.5 2.1E-06 7.3E-11 60.4 11.3 99 65-165 16-119 (126)
218 3qww_A SET and MYND domain-con 98.5 1.3E-07 4.6E-12 80.2 5.9 82 98-180 311-408 (433)
219 2uy1_A Cleavage stimulation fa 98.4 1.4E-06 4.8E-11 75.0 10.8 141 17-180 200-380 (493)
220 3qwp_A SET and MYND domain-con 98.3 7.6E-07 2.6E-11 75.4 6.3 86 93-180 296-397 (429)
221 2uy1_A Cleavage stimulation fa 97.9 9.6E-05 3.3E-09 63.5 11.9 110 66-179 195-345 (493)
222 4g26_A Pentatricopeptide repea 97.9 7.2E-05 2.5E-09 64.4 10.9 162 6-181 36-202 (501)
223 4h7y_A Dual specificity protei 97.9 9.3E-05 3.2E-09 53.5 9.2 122 25-170 8-143 (161)
224 4h7y_A Dual specificity protei 97.9 3.3E-05 1.1E-09 55.8 6.6 99 78-179 7-119 (161)
225 3ffl_A Anaphase-promoting comp 97.9 3.8E-05 1.3E-09 56.3 6.8 107 64-184 34-152 (167)
226 1nzn_A CGI-135 protein, fissio 97.8 7E-05 2.4E-09 52.6 7.1 87 24-128 29-117 (126)
227 3ffl_A Anaphase-promoting comp 97.8 8.9E-05 3.1E-09 54.4 7.8 89 61-164 74-165 (167)
228 1y8m_A FIS1; mitochondria, unk 97.8 0.0017 5.8E-08 46.4 14.2 100 64-166 20-123 (144)
229 3o48_A Mitochondria fission 1 97.7 0.00054 1.9E-08 48.3 10.8 100 64-166 21-124 (134)
230 4gns_B Protein CSD3, chitin bi 97.3 0.0013 4.5E-08 59.2 10.5 117 63-180 261-397 (754)
231 4g26_A Pentatricopeptide repea 97.3 0.0064 2.2E-07 52.2 13.7 118 63-183 39-169 (501)
232 1y8m_A FIS1; mitochondria, unk 97.2 0.0012 4.1E-08 47.2 7.4 85 26-128 35-120 (144)
233 3o48_A Mitochondria fission 1 97.2 0.0017 5.8E-08 45.8 7.6 87 25-129 35-122 (134)
234 1ya0_A SMG-7 transcript varian 96.7 0.015 5E-07 50.0 10.8 80 86-167 154-233 (497)
235 1zbp_A Hypothetical protein VP 96.4 0.079 2.7E-06 41.8 12.3 64 61-125 8-71 (273)
236 4gns_B Protein CSD3, chitin bi 96.3 0.011 3.7E-07 53.3 8.0 114 12-146 265-397 (754)
237 1zbp_A Hypothetical protein VP 95.7 0.089 3E-06 41.5 9.8 62 94-157 7-68 (273)
238 2ff4_A Probable regulatory pro 95.6 0.18 6.2E-06 41.7 11.9 83 64-148 129-233 (388)
239 1ya0_A SMG-7 transcript varian 95.5 0.063 2.1E-06 46.1 8.7 68 63-131 165-232 (497)
240 3mkq_A Coatomer beta'-subunit; 94.7 0.18 6.3E-06 44.6 9.9 42 64-111 666-707 (814)
241 3mkq_B Coatomer subunit alpha; 94.2 0.94 3.2E-05 33.3 11.1 43 64-112 19-61 (177)
242 3mkq_A Coatomer beta'-subunit; 93.6 0.92 3.2E-05 40.0 12.2 106 63-181 694-812 (814)
243 3kae_A CDC27, possible protein 93.2 1.9 6.6E-05 31.9 11.0 87 63-156 46-150 (242)
244 4fhn_B Nucleoporin NUP120; pro 92.9 0.49 1.7E-05 44.5 9.5 104 76-181 834-965 (1139)
245 3spa_A Mtrpol, DNA-directed RN 92.5 0.79 2.7E-05 42.8 10.0 92 87-180 130-227 (1134)
246 3kae_A CDC27, possible protein 92.2 0.78 2.7E-05 33.9 7.8 94 79-179 28-139 (242)
247 2ff4_A Probable regulatory pro 91.9 0.5 1.7E-05 39.0 7.4 50 63-113 184-233 (388)
248 1qsa_A Protein (soluble lytic 91.1 1.5 5.2E-05 38.5 10.0 115 64-180 228-345 (618)
249 3spa_A Mtrpol, DNA-directed RN 89.6 12 0.00041 35.1 14.8 86 63-150 140-231 (1134)
250 3mkq_B Coatomer subunit alpha; 88.3 4.3 0.00015 29.7 9.0 55 82-146 6-60 (177)
251 3txn_A 26S proteasome regulato 87.3 4.8 0.00016 33.3 9.9 114 64-179 73-206 (394)
252 4b4t_R RPN7, 26S proteasome re 87.3 0.48 1.7E-05 39.6 3.9 95 83-179 130-233 (429)
253 3txn_A 26S proteasome regulato 82.2 14 0.00049 30.4 10.5 108 61-170 110-236 (394)
254 4b4t_R RPN7, 26S proteasome re 80.2 14 0.00046 30.7 9.9 88 62-151 143-239 (429)
255 4b4t_P 26S proteasome regulato 79.1 21 0.00072 29.7 10.7 94 85-180 138-244 (445)
256 4b4t_S RPN3, 26S proteasome re 78.9 3.4 0.00012 35.5 5.8 83 86-172 233-329 (523)
257 2br9_A 14-3-3E, 14-3-3 protein 77.7 9.2 0.00032 29.3 7.4 45 68-112 148-200 (234)
258 4fhn_B Nucleoporin NUP120; pro 76.8 11 0.00037 35.5 9.0 123 27-172 839-989 (1139)
259 2npm_A 14-3-3 domain containin 76.2 11 0.00036 29.4 7.4 45 68-112 174-225 (260)
260 3iqu_A 14-3-3 protein sigma; s 75.9 11 0.00038 28.9 7.3 46 67-112 150-203 (236)
261 1o9d_A 14-3-3-like protein C; 75.8 11 0.00037 29.3 7.4 47 67-113 152-206 (260)
262 1wy6_A Hypothetical protein ST 75.3 19 0.00066 25.5 11.5 80 64-149 75-154 (172)
263 1qsa_A Protein (soluble lytic 75.2 13 0.00044 32.6 8.6 82 64-148 266-347 (618)
264 3uzd_A 14-3-3 protein gamma; s 75.1 12 0.00041 28.9 7.4 46 67-112 148-201 (248)
265 2o8p_A 14-3-3 domain containin 72.8 29 0.00099 26.4 9.7 50 64-113 139-196 (227)
266 1wy6_A Hypothetical protein ST 72.7 18 0.00061 25.7 7.0 51 63-114 104-154 (172)
267 2br9_A 14-3-3E, 14-3-3 protein 70.6 17 0.00058 27.8 7.2 47 102-148 147-201 (234)
268 3iqu_A 14-3-3 protein sigma; s 70.6 17 0.00057 27.9 7.2 47 102-148 150-204 (236)
269 4b4t_S RPN3, 26S proteasome re 70.5 2.8 9.4E-05 36.1 3.0 115 61-179 147-295 (523)
270 2npm_A 14-3-3 domain containin 69.1 19 0.00063 28.0 7.2 47 102-148 173-226 (260)
271 3uzd_A 14-3-3 protein gamma; s 68.8 19 0.00066 27.7 7.2 47 102-148 148-202 (248)
272 2wpv_A GET4, UPF0363 protein Y 68.4 32 0.0011 27.4 8.7 114 64-178 27-158 (312)
273 1o9d_A 14-3-3-like protein C; 68.1 20 0.00068 27.9 7.2 47 102-148 152-206 (260)
274 3ax2_A Mitochondrial import re 68.1 17 0.00058 22.4 5.6 31 125-156 23-53 (73)
275 2w2u_A Hypothetical P60 katani 67.9 13 0.00044 23.5 5.2 16 98-113 32-47 (83)
276 2v6y_A AAA family ATPase, P60 67.7 13 0.00045 23.4 5.2 16 98-113 24-39 (83)
277 3ubw_A 14-3-3E, 14-3-3 protein 65.9 24 0.00081 27.4 7.2 47 102-148 173-227 (261)
278 3efz_A 14-3-3 protein; 14-3-3, 64.9 14 0.00049 28.8 5.8 47 67-113 169-225 (268)
279 4gq2_M Nucleoporin NUP120; bet 64.4 79 0.0027 29.1 11.7 35 111-146 832-866 (950)
280 3ubw_A 14-3-3E, 14-3-3 protein 64.1 13 0.00045 28.9 5.5 47 67-113 173-227 (261)
281 2o8p_A 14-3-3 domain containin 63.9 45 0.0016 25.3 9.2 52 98-149 138-197 (227)
282 3t5x_A PCI domain-containing p 63.7 20 0.00069 26.5 6.4 33 86-119 16-48 (203)
283 4b4t_P 26S proteasome regulato 61.1 70 0.0024 26.5 13.0 85 63-149 150-247 (445)
284 2cfu_A SDSA1; SDS-hydrolase, l 60.3 28 0.00096 30.7 7.6 46 87-133 452-497 (658)
285 3efz_A 14-3-3 protein; 14-3-3, 58.2 21 0.00073 27.8 5.7 48 102-149 169-226 (268)
286 4a5x_A MITD1, MIT domain-conta 57.9 21 0.00072 22.6 4.8 19 96-114 27-45 (86)
287 3lpz_A GET4 (YOR164C homolog); 54.5 83 0.0028 25.3 9.5 28 151-178 133-160 (336)
288 3ax2_A Mitochondrial import re 54.0 36 0.0012 20.9 5.9 34 89-123 22-55 (73)
289 1om2_A Protein (mitochondrial 53.6 24 0.00081 23.0 4.5 27 89-116 25-51 (95)
290 3t5x_A PCI domain-containing p 52.5 45 0.0016 24.5 6.6 25 61-85 25-49 (203)
291 2cfu_A SDSA1; SDS-hydrolase, l 50.8 26 0.0009 30.8 5.8 49 124-173 454-502 (658)
292 3t5v_B Nuclear mRNA export pro 50.1 60 0.002 27.3 7.7 88 64-153 140-254 (455)
293 2crb_A Nuclear receptor bindin 50.0 36 0.0012 22.0 4.8 27 86-113 17-43 (97)
294 2dl1_A Spartin; SPG20, MIT, st 46.9 17 0.00059 24.6 3.1 18 64-81 17-34 (116)
295 4gq2_M Nucleoporin NUP120; bet 45.8 35 0.0012 31.4 6.0 33 78-111 834-866 (950)
296 2crb_A Nuclear receptor bindin 43.6 46 0.0016 21.6 4.6 27 121-148 17-43 (97)
297 2ca5_A MXIH; transport protein 41.5 12 0.00042 23.7 1.6 26 100-125 25-50 (85)
298 3s6n_M SurviVal motor neuron p 39.3 42 0.0014 17.5 3.8 13 101-113 18-30 (37)
299 3esl_A Checkpoint serine/threo 36.7 1.3E+02 0.0044 22.3 9.7 79 71-152 58-147 (202)
300 1om2_A Protein (mitochondrial 36.6 56 0.0019 21.2 4.3 32 124-156 25-56 (95)
301 2v6x_A Vacuolar protein sortin 36.4 70 0.0024 19.8 4.7 33 65-113 9-41 (85)
302 2wpv_A GET4, UPF0363 protein Y 32.3 1.9E+02 0.0064 22.9 9.1 86 80-169 183-293 (312)
303 4ady_A RPN2, 26S proteasome re 29.5 50 0.0017 30.6 4.2 112 64-180 425-550 (963)
304 4a1g_A Mitotic checkpoint seri 29.1 1E+02 0.0035 21.7 5.0 77 69-154 47-135 (152)
305 2rpa_A Katanin P60 ATPase-cont 28.5 61 0.0021 20.1 3.3 25 89-114 17-41 (78)
306 3bu8_A Telomeric repeat-bindin 26.4 85 0.0029 23.8 4.3 62 66-128 88-157 (235)
307 4ady_A RPN2, 26S proteasome re 26.3 1.6E+02 0.0055 27.3 6.9 46 98-147 537-587 (963)
308 2npu_A FKBP12-rapamycin comple 26.1 1.1E+02 0.0038 20.8 4.6 70 93-167 49-123 (126)
309 2wvi_A Mitotic checkpoint seri 26.0 1.2E+02 0.0042 21.6 5.0 33 119-152 96-128 (164)
310 2g0u_A Type III secretion syst 25.9 1.2E+02 0.004 19.5 4.3 28 64-91 30-57 (92)
311 2uwj_G Type III export protein 25.9 1.5E+02 0.005 19.7 5.8 73 100-179 21-93 (115)
312 2cp9_A EF-TS, EF-TSMT, elongat 24.8 74 0.0025 18.9 3.1 18 128-145 30-47 (64)
313 3esl_A Checkpoint serine/threo 24.0 2.2E+02 0.0076 21.0 7.7 52 64-116 93-146 (202)
314 3lew_A SUSD-like carbohydrate 23.1 3.3E+02 0.011 22.7 8.0 48 66-114 174-232 (495)
315 2wvi_A Mitotic checkpoint seri 22.3 2.1E+02 0.0073 20.3 7.5 34 81-115 93-126 (164)
316 4gof_A Small glutamine-rich te 21.6 59 0.002 18.5 2.1 20 65-84 29-48 (52)
317 1wfd_A Hypothetical protein 15 21.4 1.6E+02 0.0056 18.5 7.1 17 64-80 10-26 (93)
318 3re2_A Predicted protein; meni 20.5 2.4E+02 0.0084 23.2 6.1 44 69-113 276-324 (472)
319 2yhe_A SEC-alkyl sulfatase; hy 25.9 21 0.00073 31.6 0.0 43 91-134 468-510 (668)
No 1
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.92 E-value=4.5e-25 Score=170.63 Aligned_cols=155 Identities=13% Similarity=-0.009 Sum_probs=130.5
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|.++.+.|++.+|+..|..+++.+|+++..++..|..+... |++++|+..|+++++++|+
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--------------------g~~~~A~~~~~~al~~~P~ 71 (217)
T 2pl2_A 12 GVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKL--------------------GLVNPALENGKTLVARTPR 71 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHhCCC
Confidence 66788899999999999999999999999999999998774 7888888888888888888
Q ss_pred CHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 029199 83 NPLFLSNYAQFLYQSK-----------QDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASP 151 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~-----------g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p 151 (197)
++.+++++|.++.. . |++++|+..|+++++++|+++.++.++|.++...|+ +++|+.+|+++++++
T Consensus 72 ~~~a~~~lg~~~~~-~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~- 148 (217)
T 2pl2_A 72 YLGGYMVLSEAYVA-LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE-RDKAEASLKQALALE- 148 (217)
T ss_dssp CHHHHHHHHHHHHH-HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHH-hhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcc-
Confidence 88888888877666 7 888888888888888888888888888888888774 788888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 152 EDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 152 ~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+++.+++++|.++..+|++++|+..|++.
T Consensus 149 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a 177 (217)
T 2pl2_A 149 DTPEIRSALAELYLSMGRLDEALAQYAKA 177 (217)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 78888888888888888888887777774
No 2
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.91 E-value=2.4e-24 Score=160.92 Aligned_cols=156 Identities=13% Similarity=0.006 Sum_probs=149.3
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|.++.+.|++.+|+..|.++++.+|+++..++..|..+.. .|++++|+..+++++..+|+
T Consensus 12 G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--------------------~~~~~~a~~~~~~~~~~~~~ 71 (184)
T 3vtx_A 12 GDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMD--------------------IGLPNDAIESLKKFVVLDTT 71 (184)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHhcCch
Confidence 7788999999999999999999999999999999998877 49999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG 162 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 162 (197)
++.++..+|.++.. .+++++|+..++++++++|+++.++..+|.++..+|+ +++|+++|+++++++|+++.+|+++|.
T Consensus 72 ~~~~~~~~~~~~~~-~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~lg~ 149 (184)
T 3vtx_A 72 SAEAYYILGSANFM-IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE-HDKAIEAYEKTISIKPGFIRAYQSIGL 149 (184)
T ss_dssp CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC-chhHHHHHHHHHHhcchhhhHHHHHHH
Confidence 99999999977777 9999999999999999999999999999999999885 999999999999999999999999999
Q ss_pred HHHHcCCccccccCCCcc
Q 029199 163 FLWETEEDNDECDAPSEL 180 (197)
Q Consensus 163 ~~~~~g~~~ea~~~~~~~ 180 (197)
++..+|++++|...|++.
T Consensus 150 ~~~~~g~~~~A~~~~~~a 167 (184)
T 3vtx_A 150 AYEGKGLRDEAVKYFKKA 167 (184)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 999999999999999884
No 3
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.91 E-value=4.7e-24 Score=156.13 Aligned_cols=145 Identities=15% Similarity=0.090 Sum_probs=132.6
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|+++...+++++||..|..+...+|.++..++..|..+.. .|++++|+++|+++++++|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~--------------------~~~~~~A~~~~~~al~~~p~ 63 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYE--------------------AKEYDLAKKYICTYINVQER 63 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCC
Confidence 8899999999999999999999999999999998888766 49999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHH
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY-YERAVHASPEDSHVHASYA 161 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~la 161 (197)
++.+|+++|.++.. .|++++|+.+|+++++++|+++.+++++|.++...++ +++|... ++++++++|+++.++..++
T Consensus 64 ~~~a~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~aa~~~~~~al~l~P~~~~~~~l~~ 141 (150)
T 4ga2_A 64 DPKAHRFLGLLYEL-EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDV-TDGRAKYWVERAAKLFPGSPAVYKLKE 141 (150)
T ss_dssp CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 99999999988877 9999999999999999999999999999999999886 6666654 6999999999999999999
Q ss_pred HHHHHcCC
Q 029199 162 GFLWETEE 169 (197)
Q Consensus 162 ~~~~~~g~ 169 (197)
.++...|+
T Consensus 142 ~ll~~~G~ 149 (150)
T 4ga2_A 142 QLLDCEGE 149 (150)
T ss_dssp HHHHTCCC
T ss_pred HHHHHhCc
Confidence 99999886
No 4
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.91 E-value=1.6e-24 Score=194.82 Aligned_cols=156 Identities=20% Similarity=0.092 Sum_probs=149.5
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|+++.+.|++.+|+..|.++++.+|+++..++..|..+.. .|++++|+++|+++++++|+
T Consensus 16 G~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~--------------------~g~~~eA~~~~~~Al~l~P~ 75 (723)
T 4gyw_A 16 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ--------------------QGKLQEALMHYKEAIRISPT 75 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCC
Confidence 7889999999999999999999999999999999999877 49999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG 162 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 162 (197)
++.+|+++|.++.. +|++++|+++|+++++++|+++.+++++|.++..+|+ +++|+++|+++++++|+++.++.++|.
T Consensus 76 ~~~a~~nLg~~l~~-~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~-~~eAi~~~~~Al~l~P~~~~a~~~L~~ 153 (723)
T 4gyw_A 76 FADAYSNMGNTLKE-MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN-IPEAIASYRTALKLKPDFPDAYCNLAH 153 (723)
T ss_dssp CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHhhhhh
Confidence 99999999988887 9999999999999999999999999999999999885 999999999999999999999999999
Q ss_pred HHHHcCCccccccCCCcc
Q 029199 163 FLWETEEDNDECDAPSEL 180 (197)
Q Consensus 163 ~~~~~g~~~ea~~~~~~~ 180 (197)
++..+|++++|.+.++++
T Consensus 154 ~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 154 CLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp HHHHTTCCTTHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHH
Confidence 999999999998877764
No 5
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.91 E-value=2.8e-24 Score=166.11 Aligned_cols=166 Identities=17% Similarity=0.076 Sum_probs=134.9
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|.++...|++.+|+..|..+++.+|+++..++..|..+...+... .......|++++|+..|+++++++|+
T Consensus 46 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~---------~~~~~~~g~~~~A~~~~~~al~~~P~ 116 (217)
T 2pl2_A 46 ARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQA---------EDRERGKGYLEQALSVLKDAERVNPR 116 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTC---------SSHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhh---------hhhcccccCHHHHHHHHHHHHHhCcc
Confidence 667888999999999999999999999999999998876520000 00000018999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG 162 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 162 (197)
++.+|.++|.++.. .|++++|+.+|+++++++ +++.+++++|.++...|+ +++|+.+|+++++++|+++.++.++|.
T Consensus 117 ~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~P~~~~~~~~la~ 193 (217)
T 2pl2_A 117 YAPLHLQRGLVYAL-LGERDKAEASLKQALALE-DTPEIRSALAELYLSMGR-LDEALAQYAKALEQAPKDLDLRVRYAS 193 (217)
T ss_dssp CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 99999999988887 999999999999999999 999999999999999885 999999999999999999999999999
Q ss_pred HHHHcCCccccccCCCcc
Q 029199 163 FLWETEEDNDECDAPSEL 180 (197)
Q Consensus 163 ~~~~~g~~~ea~~~~~~~ 180 (197)
++..+|++++|...+++.
T Consensus 194 ~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 194 ALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHTC--------------
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 999999999999999875
No 6
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.89 E-value=7.2e-24 Score=177.83 Aligned_cols=155 Identities=11% Similarity=0.079 Sum_probs=142.6
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCC-HHHHHHHHHHHHHhCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGD-SQGVEEYYKKMVEENP 81 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~P 81 (197)
|.++...+++.+|+..|..+++.+|+++..|+.+|..+... |+ +++|+++|+++++++|
T Consensus 104 g~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~--------------------g~d~~eAl~~~~~al~l~P 163 (382)
T 2h6f_A 104 RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL--------------------QKDLHEEMNYITAIIEEQP 163 (382)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc--------------------ccCHHHHHHHHHHHHHHCC
Confidence 55677788899999999999999999999999999998874 75 9999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199 82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYA 161 (197)
Q Consensus 82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 161 (197)
++..+|+++|.++.. +|++++|+.+|+++++++|+++.+|+++|.++..+|+ +++|+.+|+++++++|+++.+|+++|
T Consensus 164 ~~~~a~~~~g~~~~~-~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~-~~eAl~~~~~al~l~P~~~~a~~~lg 241 (382)
T 2h6f_A 164 KNYQVWHHRRVLVEW-LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL-WDNELQYVDQLLKEDVRNNSVWNQRY 241 (382)
T ss_dssp TCHHHHHHHHHHHHH-HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999988777 9999999999999999999999999999999999996 89999999999999999999999999
Q ss_pred HHHHH-cCCccccc-----cCCCc
Q 029199 162 GFLWE-TEEDNDEC-----DAPSE 179 (197)
Q Consensus 162 ~~~~~-~g~~~ea~-----~~~~~ 179 (197)
.++.. .|..++|+ ..+++
T Consensus 242 ~~l~~l~~~~~eA~~~~el~~~~~ 265 (382)
T 2h6f_A 242 FVISNTTGYNDRAVLEREVQYTLE 265 (382)
T ss_dssp HHHHHTTCSCSHHHHHHHHHHHHH
T ss_pred HHHHHhcCcchHHHHHHHHHHHHH
Confidence 99999 55557773 55555
No 7
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.89 E-value=3.1e-22 Score=142.54 Aligned_cols=120 Identities=18% Similarity=0.155 Sum_probs=112.7
Q ss_pred cccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHH
Q 029199 23 QERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLP 102 (197)
Q Consensus 23 ~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~ 102 (197)
...+|+.++.+..+|..+-. .|++++|+++|+++++++|+++.+|+++|.++.. +|+++
T Consensus 6 a~inP~~a~~~~~~G~~~~~--------------------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~ 64 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYFK--------------------KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK-LMEFQ 64 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHCHHHHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh-hccHH
Confidence 34689999999999988776 4999999999999999999999999999988887 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 029199 103 KAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFL 164 (197)
Q Consensus 103 ~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 164 (197)
+|+..|+++++++|+++.+++++|.++..+|+ +++|+++|+++++++|+++.++.+++.|+
T Consensus 65 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 65 RALDDCDTCIRLDSKFIKGYIRKAACLVAMRE-WSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999885 99999999999999999999999999875
No 8
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.87 E-value=1.5e-22 Score=148.16 Aligned_cols=121 Identities=15% Similarity=0.118 Sum_probs=111.1
Q ss_pred CcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 029199 57 FYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQ 136 (197)
Q Consensus 57 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~ 136 (197)
|..+...|++++|++.|++++..+|+++..++++|.+++. .|++++|+.+|+++++++|+++.+|+++|.++...|+ +
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~-~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYE-AKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN-T 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-H
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc-h
Confidence 4455667999999999999999999999999999988888 9999999999999999999999999999999999885 9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCC-Cc
Q 029199 137 DRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAP-SE 179 (197)
Q Consensus 137 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~-~~ 179 (197)
++|+.+|+++++++|+++.+++++|.++.++|+++++...+ ++
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~ 125 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVER 125 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999876654 55
No 9
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.86 E-value=5.9e-23 Score=172.29 Aligned_cols=158 Identities=12% Similarity=0.089 Sum_probs=144.8
Q ss_pred CCcchhHHHH-HHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC
Q 029199 2 AGTALSEEVK-VMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN 80 (197)
Q Consensus 2 ~~~~~~~~~~-~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 80 (197)
.|.+|...++ +.+|+..|..+++.+|+++.+|+.+|..+..+ |++++|+.+|+++++++
T Consensus 137 ~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~--------------------g~~~eAl~~~~kal~ld 196 (382)
T 2h6f_A 137 RRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL--------------------RDPSQELEFIADILNQD 196 (382)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------------------TCCTTHHHHHHHHHHHC
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--------------------cCHHHHHHHHHHHHHhC
Confidence 3678888997 99999999999999999999999999998885 88999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH-----HHHHHHHHHhCCCCHH
Q 029199 81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRA-----ATYYERAVHASPEDSH 155 (197)
Q Consensus 81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A-----~~~~~~al~~~p~~~~ 155 (197)
|++..+|+++|.++.. +|++++|+.+|+++++++|+++.+|+++|.++..+++..++| +++|+++++++|++..
T Consensus 197 P~~~~a~~~lg~~~~~-~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~ 275 (382)
T 2h6f_A 197 AKNYHAWQHRQWVIQE-FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES 275 (382)
T ss_dssp TTCHHHHHHHHHHHHH-HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred ccCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999988777 999999999999999999999999999999999955544777 5999999999999999
Q ss_pred HHHHHHHHHHHcC--CccccccCCCcc
Q 029199 156 VHASYAGFLWETE--EDNDECDAPSEL 180 (197)
Q Consensus 156 ~~~~la~~~~~~g--~~~ea~~~~~~~ 180 (197)
+|++++.++..+| +++++.+.+.++
T Consensus 276 a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 276 AWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCccchHHHHHHHHHh
Confidence 9999999999988 688887666654
No 10
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.86 E-value=3.4e-21 Score=141.72 Aligned_cols=127 Identities=10% Similarity=0.063 Sum_probs=116.1
Q ss_pred hhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHH
Q 029199 6 LSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPL 85 (197)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~ 85 (197)
...-.++..+-..|..+++.+|++++.++..|..+.. .|++++|+.+|+++++++|+++.
T Consensus 12 ~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~--------------------~g~~~eA~~~~~~al~~~P~~~~ 71 (151)
T 3gyz_A 12 STAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYN--------------------KGRIEEAEVFFRFLCIYDFYNVD 71 (151)
T ss_dssp HHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCCCHH
Confidence 3455667777788899999999999999999999877 49999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 029199 86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS 154 (197)
Q Consensus 86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~ 154 (197)
+|+++|.++.. .|++++|+.+|+++++++|+++.+++++|.++..+|+ +++|+.+|++++++.|+.+
T Consensus 72 ~~~~lg~~~~~-~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~-~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 72 YIMGLAAIYQI-KEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKA-PLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHH-HccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCHH
Confidence 99999988887 9999999999999999999999999999999999885 9999999999999999865
No 11
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.86 E-value=1.7e-22 Score=155.85 Aligned_cols=147 Identities=10% Similarity=0.061 Sum_probs=136.4
Q ss_pred CCcchhHHHHHHHHhhhcCcccccCC-CChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC
Q 029199 2 AGTALSEEVKVMEALWNAGFEQERGT-VGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN 80 (197)
Q Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 80 (197)
.|.++-..+++.+|+..|..+++.+| .++..++..|..... .|++++|+++|+++++++
T Consensus 13 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~A~~~~~~al~~~ 72 (228)
T 4i17_A 13 EGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADN--------------------IKKYKEAADYFDIAIKKN 72 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH--------------------hhcHHHHHHHHHHHHHhC
Confidence 36778889999999999999999999 889999999988777 499999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Q 029199 81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG-------EILSQYAKLVWELHNDQDRAATYYERAVHASPE- 152 (197)
Q Consensus 81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~-------~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~- 152 (197)
|+++.+|.++|.++.. +|++++|+.+|+++++++|+++ .++.++|.++...|+ +++|+++|+++++++|+
T Consensus 73 p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~ 150 (228)
T 4i17_A 73 YNLANAYIGKSAAYRD-MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN-IEKAEENYKHATDVTSKK 150 (228)
T ss_dssp CSHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTSSCHH
T ss_pred cchHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc-HHHHHHHHHHHHhcCCCc
Confidence 9999999999988887 9999999999999999999999 669999999999885 99999999999999999
Q ss_pred -CHHHHHHHHHHHHHcCCc
Q 029199 153 -DSHVHASYAGFLWETEED 170 (197)
Q Consensus 153 -~~~~~~~la~~~~~~g~~ 170 (197)
++.+++++|.++..+|+.
T Consensus 151 ~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 151 WKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 999999999999999988
No 12
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.86 E-value=1.3e-21 Score=175.90 Aligned_cols=135 Identities=19% Similarity=0.169 Sum_probs=126.6
Q ss_pred ccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH
Q 029199 24 ERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPK 103 (197)
Q Consensus 24 ~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~ 103 (197)
...|++++.+...|..+.. .|++++|+++|+++++++|+++.+|++||.++.. +|++++
T Consensus 3 gs~P~~a~al~nLG~~~~~--------------------~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~-~g~~~e 61 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKRE--------------------QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-QGKLQE 61 (723)
T ss_dssp ---CHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHH
T ss_pred CCCCCcHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHH
Confidence 3578899999999998877 4999999999999999999999999999988887 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 104 AEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 104 A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
|+.+|+++++++|+++.+++++|.++..+|+ +++|+++|+++++++|+++.+|.++|.++.++|++++|+..|++.
T Consensus 62 A~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~-~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A 137 (723)
T 4gyw_A 62 ALMHYKEAIRISPTFADAYSNMGNTLKEMQD-VQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTA 137 (723)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999885 999999999999999999999999999999999999999999884
No 13
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.85 E-value=1.7e-20 Score=137.97 Aligned_cols=156 Identities=13% Similarity=0.085 Sum_probs=146.8
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|.++...+++.+|+..|..+++..|.++..+...|..+.. .|++++|+.+++++++.+|+
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~A~~~~~~~~~~~~~ 74 (186)
T 3as5_A 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVK--------------------TGAVDRGTELLERSLADAPD 74 (186)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhcCCC
Confidence 5677788999999999999999999999999999988766 49999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG 162 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 162 (197)
++.++..+|.++.. .|++++|+.+|+++++.+|+++.++..+|.++...|+ +++|+.+++++++.+|+++.++..+|.
T Consensus 75 ~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~ 152 (186)
T 3as5_A 75 NVKVATVLGLTYVQ-VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR-FDEAIDSFKIALGLRPNEGKVHRAIAF 152 (186)
T ss_dssp CHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc-HHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 99999999988877 9999999999999999999999999999999999885 999999999999999999999999999
Q ss_pred HHHHcCCccccccCCCcc
Q 029199 163 FLWETEEDNDECDAPSEL 180 (197)
Q Consensus 163 ~~~~~g~~~ea~~~~~~~ 180 (197)
++..+|++++|...++++
T Consensus 153 ~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 153 SYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 999999999999888875
No 14
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.84 E-value=3.8e-22 Score=153.13 Aligned_cols=157 Identities=11% Similarity=0.043 Sum_probs=135.0
Q ss_pred CCcchhHHHHHHHHhhhcCcccccCCCChhhHHh----------------hhcccCCCCCCCCCCCCCCCCCcccCCCCC
Q 029199 2 AGTALSEEVKVMEALWNAGFEQERGTVGQEMYLA----------------KGLGVGGRGGRGGGTGGGGSGFYPAGSGGD 65 (197)
Q Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 65 (197)
+|.++-+.|++.+|+..|..+++.+|+++..++. .|..+.. .|+
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~--------------------~g~ 69 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK--------------------NRN 69 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHH--------------------TTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHH--------------------CCC
Confidence 3677888999999999999999999999999998 6666555 499
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHH
Q 029199 66 SQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHN-DQDRAATYYE 144 (197)
Q Consensus 66 ~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~-~~~~A~~~~~ 144 (197)
+++|+..|+++++++|+++.+|+++|.++.. .|++++|+.+|+++++++|+++.+++++|.+++..+. +.+++...+.
T Consensus 70 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 148 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVC-RGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYK 148 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999999999988887 9999999999999999999999999999999877653 2456778888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 145 RAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 145 ~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+++..+| ...+++++|.++..+|++++|+..|++.
T Consensus 149 ~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~a 183 (208)
T 3urz_A 149 KLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKV 183 (208)
T ss_dssp ---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8764333 2347889999999999999999999884
No 15
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.83 E-value=1.4e-20 Score=155.62 Aligned_cols=152 Identities=14% Similarity=0.123 Sum_probs=76.8
Q ss_pred hhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHH
Q 029199 6 LSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPL 85 (197)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~ 85 (197)
+...|++.+|+..|..+++.+|+++..++..|..+.. .|++++|+..|+++++++|+++.
T Consensus 179 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--------------------~~~~~~A~~~~~~al~~~p~~~~ 238 (388)
T 1w3b_A 179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE--------------------ARIFDRAVAAYLRALSLSPNHAV 238 (388)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT--------------------TTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhhCcCCHH
Confidence 3334444444444444444444444444444444433 34555555555555555555555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 029199 86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLW 165 (197)
Q Consensus 86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 165 (197)
++.++|.++.. .|++++|+..|+++++++|+++.++.++|.++...|+ +++|+++|+++++++|+++.++.++|.++.
T Consensus 239 ~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYE-QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS-VAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 55555544444 5555555555555555555555555555555555442 555555555555555555555555555555
Q ss_pred HcCCccccccCCCc
Q 029199 166 ETEEDNDECDAPSE 179 (197)
Q Consensus 166 ~~g~~~ea~~~~~~ 179 (197)
..|++++|...+++
T Consensus 317 ~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 317 EQGNIEEAVRLYRK 330 (388)
T ss_dssp TTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 55555555444444
No 16
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=4.6e-21 Score=157.03 Aligned_cols=176 Identities=11% Similarity=0.067 Sum_probs=147.5
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCC----------------CCCc
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGG----------------SGFY 58 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~----------------~~~~ 58 (197)
|.++...|++.+|+..|..+++.+|+++..+...|..+...|.+.. ....|. ..+.
T Consensus 106 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~ 185 (365)
T 4eqf_A 106 GITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSK 185 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC----------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHH
Confidence 5567777888888888888888888888888888877766665321 000111 1244
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 029199 59 PAGSGGDSQGVEEYYKKMVEENPG--NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQ 136 (197)
Q Consensus 59 ~~~~~g~~~~A~~~~~~al~~~P~--~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~ 136 (197)
.+...|++++|+++|+++++++|+ ++.+++++|.++.. .|++++|+.+|+++++++|+++.++.++|.++...|+ +
T Consensus 186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~ 263 (365)
T 4eqf_A 186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL-SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDR-S 263 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-H
T ss_pred HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-H
Confidence 566679999999999999999999 99999999988777 9999999999999999999999999999999999885 9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 137 DRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 137 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
++|+.+|+++++++|+++.++.++|.++..+|++++|...+++.
T Consensus 264 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 307 (365)
T 4eqf_A 264 EEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTA 307 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888885
No 17
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.83 E-value=4.6e-21 Score=171.29 Aligned_cols=150 Identities=11% Similarity=-0.026 Sum_probs=138.3
Q ss_pred HHHHHHHhhhcCccc--------ccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC
Q 029199 9 EVKVMEALWNAGFEQ--------ERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN 80 (197)
Q Consensus 9 ~~~~~~a~~~~~~~~--------~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 80 (197)
.+++.+|+..|..++ +.+|++++.++..|..+.. .|++++|++.|+++++++
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~--------------------~g~~~~A~~~~~~al~~~ 463 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLD--------------------LGDVAKATRKLDDLAERV 463 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHH--------------------HTCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHh--------------------cCCHHHHHHHHHHHhccC
Confidence 456778888888887 8889999999998888766 399999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199 81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASY 160 (197)
Q Consensus 81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 160 (197)
|+++.+|+++|.++.. .|++++|+..|+++++++|+++.+++++|.++..+|+ +++ +++|+++++++|+++.+|+++
T Consensus 464 p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~-~~~-~~~~~~al~~~P~~~~a~~~l 540 (681)
T 2pzi_A 464 GWRWRLVWYRAVAELL-TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN-TDE-HKFYQTVWSTNDGVISAAFGL 540 (681)
T ss_dssp CCCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC-CCT-TCHHHHHHHHCTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-hHH-HHHHHHHHHhCCchHHHHHHH
Confidence 9999999999988887 9999999999999999999999999999999999886 899 999999999999999999999
Q ss_pred HHHHHHcCCccccccCCCccc
Q 029199 161 AGFLWETEEDNDECDAPSELD 181 (197)
Q Consensus 161 a~~~~~~g~~~ea~~~~~~~~ 181 (197)
|.++..+|++++|+..|++..
T Consensus 541 g~~~~~~g~~~~A~~~~~~al 561 (681)
T 2pzi_A 541 ARARSAEGDRVGAVRTLDEVP 561 (681)
T ss_dssp HHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHcCCHHHHHHHHHhhc
Confidence 999999999999999999853
No 18
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.83 E-value=2.8e-21 Score=142.21 Aligned_cols=108 Identities=13% Similarity=0.022 Sum_probs=102.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 029199 71 EYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS 150 (197)
Q Consensus 71 ~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~ 150 (197)
..|+++++++|+++.+++++|.+++. .|++++|+.+|+++++++|+++.+|+++|.++..+|+ +++|+.+|+++++++
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~-~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~-~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYN-KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ-FQQAADLYAVAFALG 100 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc-HHHHHHHHHHHHhhC
Confidence 44677789999999999999988887 9999999999999999999999999999999999885 999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 151 PEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 151 p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
|+++.+|+++|.++..+|++++|...|++.
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999999885
No 19
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.83 E-value=8.7e-21 Score=156.79 Aligned_cols=152 Identities=18% Similarity=0.080 Sum_probs=113.0
Q ss_pred hHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 029199 7 SEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLF 86 (197)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 86 (197)
...|++.+|+..|..+++.+|+++..+...|..+.. .|++++|++.|+++++++|++..+
T Consensus 146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~al~~~p~~~~~ 205 (388)
T 1w3b_A 146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA--------------------QGEIWLAIHHFEKAVTLDPNFLDA 205 (388)
T ss_dssp HTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT--------------------TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhcCCCcHHH
Confidence 334444444444444444444444444444444433 488888888888888888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199 87 LSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWE 166 (197)
Q Consensus 87 ~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 166 (197)
+.++|.++.. .|++++|+..|+++++++|+++.++.++|.++...|+ +++|+++|+++++++|+++.++.++|.++.+
T Consensus 206 ~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 206 YINLGNVLKE-ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL-IDLAIDTYRRAIELQPHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHT-TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 8888866665 8888888888888888888888888888888888774 8888888888888888888888888888888
Q ss_pred cCCccccccCCCcc
Q 029199 167 TEEDNDECDAPSEL 180 (197)
Q Consensus 167 ~g~~~ea~~~~~~~ 180 (197)
.|++++|...+++.
T Consensus 284 ~g~~~~A~~~~~~a 297 (388)
T 1w3b_A 284 KGSVAEAEDCYNTA 297 (388)
T ss_dssp HSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 88888888777764
No 20
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.83 E-value=5.7e-20 Score=141.52 Aligned_cols=176 Identities=11% Similarity=-0.042 Sum_probs=89.1
Q ss_pred CCcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCC------CcccCCCCCHH
Q 029199 2 AGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSG------FYPAGSGGDSQ 67 (197)
Q Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~------~~~~~~~g~~~ 67 (197)
.|.++-..+++.+|+..|..+++.+|.++..++..|..+...|.+.. ....|... +..+...|+++
T Consensus 29 ~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 108 (243)
T 2q7f_A 29 QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYK 108 (243)
T ss_dssp -------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHH
Confidence 46677778888888888888888888888888887777665422111 00011111 01112235555
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 029199 68 GVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAV 147 (197)
Q Consensus 68 ~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al 147 (197)
+|++.|+++++.+|+++.++..+|.++.. .|++++|+..|+++++++|+++.++..+|.++...|+ +++|+.+|++++
T Consensus 109 ~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~ 186 (243)
T 2q7f_A 109 EAKDMFEKALRAGMENGDLFYMLGTVLVK-LEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM-LDEALSQFAAVT 186 (243)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence 55555555555555555555555544444 5555555555555555555555555555555555443 455555555555
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 148 HASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 148 ~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
+.+|+++.++..+|.++..+|++++|...+++
T Consensus 187 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 187 EQDPGHADAFYNAGVTYAYKENREKALEMLDK 218 (243)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HhCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555555555555555555555555544
No 21
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.82 E-value=2.6e-21 Score=166.05 Aligned_cols=174 Identities=11% Similarity=-0.106 Sum_probs=82.1
Q ss_pred cchhHHHHH-HHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCC-----CCcccCCC------
Q 029199 4 TALSEEVKV-MEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGS-----GFYPAGSG------ 63 (197)
Q Consensus 4 ~~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~-----~~~~~~~~------ 63 (197)
.++...+++ .+|+..|..+++.+|+++..++..|..+...|.+.. ....|.. .+..+...
T Consensus 110 ~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~ 189 (474)
T 4abn_A 110 KALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGD 189 (474)
T ss_dssp HHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHH
T ss_pred HHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChh
Confidence 344444555 666666666666666666666666655544322110 0011110 00011123
Q ss_pred ---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHH
Q 029199 64 ---GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSK--------QDLPKAEEYYSRAILADP---GDGEILSQYAKLV 129 (197)
Q Consensus 64 ---g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~--------g~~~~A~~~~~~al~l~P---~~~~~~~~lg~~l 129 (197)
|++++|++.|+++++++|+++.+|+++|.++.. . |++++|+.+|+++++++| +++.+++++|.++
T Consensus 190 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~ 268 (474)
T 4abn_A 190 EHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLS-LYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLH 268 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHH
Confidence 444555555555555555555555555544433 4 445555555555555555 4555555555554
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 130 WELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 130 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
...|+ +++|+++|+++++++|+++.++.+++.++..+|++++|...+.+
T Consensus 269 ~~~g~-~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 269 KYEES-YGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44442 45555555555555555555555555555555555554444444
No 22
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.82 E-value=2e-20 Score=160.54 Aligned_cols=141 Identities=15% Similarity=-0.064 Sum_probs=119.3
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCC---------CCCCC--------CCCCCCCCC------cc
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGR---------GGRGG--------GTGGGGSGF------YP 59 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~---------~~~~~--------~~~~~~~~~------~~ 59 (197)
|.++-..+++.+|+..|..+++.+|+ +..+...|..+... |.+.. ....|.... ..
T Consensus 144 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 222 (474)
T 4abn_A 144 GEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNA 222 (474)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 67788999999999999999999999 78999999888776 43222 122444332 23
Q ss_pred cCCC--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 60 AGSG--------GDSQGVEEYYKKMVEENP---GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKL 128 (197)
Q Consensus 60 ~~~~--------g~~~~A~~~~~~al~~~P---~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~ 128 (197)
+... |++++|+++|+++++++| +++.+|+++|.++.. .|++++|+.+|+++++++|+++.++.+++.+
T Consensus 223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~ 301 (474)
T 4abn_A 223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY-EESYGEALEGFSQAAALDPAWPEPQQREQQL 301 (474)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3334 889999999999999999 999999999988887 9999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 029199 129 VWELHNDQDRAATYYERA 146 (197)
Q Consensus 129 l~~~~~~~~~A~~~~~~a 146 (197)
+..+++ +++|++.+.+.
T Consensus 302 ~~~lg~-~~eAi~~~~~~ 318 (474)
T 4abn_A 302 LEFLSR-LTSLLESKGKT 318 (474)
T ss_dssp HHHHHH-HHHHHHHTTTC
T ss_pred HHHHHH-HHHHHHHhccc
Confidence 999996 89999887665
No 23
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.82 E-value=2.4e-20 Score=132.65 Aligned_cols=104 Identities=19% Similarity=0.147 Sum_probs=97.7
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 029199 75 KMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS 154 (197)
Q Consensus 75 ~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~ 154 (197)
++..+||+.+.++.++|..++. .|++++|+.+|+++++++|+++.+++++|.++..+|+ +++|+..|+++++++|+++
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~ 81 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFK-KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME-FQRALDDCDTCIRLDSKFI 81 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhcc-HHHHHHHHHHHHHhhhhhh
Confidence 4456899999999999999998 9999999999999999999999999999999999885 9999999999999999999
Q ss_pred HHHHHHHHHHHHcCCccccccCCCcc
Q 029199 155 HVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 155 ~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.+|+++|.++..+|++++|...|++.
T Consensus 82 ~a~~~lg~~~~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 82 KGYIRKAACLVAMREWSKAQRAYEDA 107 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999984
No 24
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.82 E-value=1.5e-19 Score=134.74 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=122.6
Q ss_pred CChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 029199 28 VGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEY 107 (197)
Q Consensus 28 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~ 107 (197)
.++.+|+..|..... .|++++|+++|+++++++|+++.+|.++|.++.. .|++++|+..
T Consensus 3 e~~~iy~~lG~~~~~--------------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~a~~~ 61 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRT--------------------KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMD-IGLPNDAIES 61 (184)
T ss_dssp -CHHHHHHHHHHHHH--------------------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHH
Confidence 467888888888766 4999999999999999999999999999988887 9999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 108 YSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 108 ~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+++++..+|+++.++..+|.++...+ ++++|.+.+.+++.++|+++.++..+|.++..+|++++|+..|++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 133 (184)
T 3vtx_A 62 LKKFVVLDTTSAEAYYILGSANFMID-EKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKT 133 (184)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 99999999999999999999999977 5999999999999999999999999999999999999999999885
No 25
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.82 E-value=6.3e-20 Score=141.25 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
.|++++|++.|+++++.+|+++.++..+|.++.. .|++++|+..|+++++.+|+++.++..+|.++...|+ +++|+.+
T Consensus 138 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~ 215 (243)
T 2q7f_A 138 LEQPKLALPYLQRAVELNENDTEARFQFGMCLAN-EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN-REKALEM 215 (243)
T ss_dssp TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-TTHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC-HHHHHHH
Confidence 3666666666666666666666666666655555 6666666666666666666666666666666666553 6666666
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcC
Q 029199 143 YERAVHASPEDSHVHASYAGFLWETE 168 (197)
Q Consensus 143 ~~~al~~~p~~~~~~~~la~~~~~~g 168 (197)
|+++++++|+++.++..++.+....|
T Consensus 216 ~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 216 LDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHccCcchHHHHHHHHHHHhhcc
Confidence 66666666666666666665554433
No 26
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.82 E-value=3.6e-20 Score=135.24 Aligned_cols=125 Identities=9% Similarity=-0.009 Sum_probs=106.7
Q ss_pred hhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199 17 WNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQ 96 (197)
Q Consensus 17 ~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~ 96 (197)
..|..+++.+|.++..++..|..+.. .|++++|+..|++++.++|+++.+|+++|.++..
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~--------------------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 67 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQ--------------------SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA 67 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHH--------------------cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH
Confidence 34555667789999999998888776 4899999999999999999999999999977777
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 97 SKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGF 163 (197)
Q Consensus 97 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 163 (197)
.|++++|+.+|+++++++|+++.+++++|.++..+|+ +++|+.+|+++++++|+++........+
T Consensus 68 -~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~ 132 (148)
T 2vgx_A 68 -MGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGE-LAEAESGLFLAQELIANXPEFXELSTRV 132 (148)
T ss_dssp -TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred -HhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCCCcchHHHHHH
Confidence 9999999999999999999999999999999999885 9999999999999998887664444333
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=5.6e-20 Score=150.57 Aligned_cols=156 Identities=15% Similarity=0.120 Sum_probs=138.9
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|.++-..|++.+|+..|..+++.+|.++..++..|..+... |++++|+++|+++++++|+
T Consensus 72 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------------g~~~~A~~~~~~al~~~p~ 131 (365)
T 4eqf_A 72 GLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAEN--------------------ENEQAAIVALQRCLELQPN 131 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHhcCCC
Confidence 56778889999999999999999999999999999988774 8999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--------------------------------------------C-
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADP--------------------------------------------G- 117 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P--------------------------------------------~- 117 (197)
++.+|.++|.++.. .|++++|+.+|+++++++| +
T Consensus 132 ~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 210 (365)
T 4eqf_A 132 NLKALMALAVSYTN-TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM 210 (365)
T ss_dssp CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS
T ss_pred CHHHHHHHHHHHHc-cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc
Confidence 99999999977776 8888888777777776654 4
Q ss_pred -CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 118 -DGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 118 -~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
++.++.++|.++...|+ +++|+++|+++++++|+++.+|.++|.++..+|++++|...+++.
T Consensus 211 ~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 211 IDPDLQTGLGVLFHLSGE-FNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp CCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88899999999999885 999999999999999999999999999999999999999888874
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=1.5e-19 Score=147.33 Aligned_cols=154 Identities=12% Similarity=0.093 Sum_probs=143.4
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCC--ChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTV--GQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN 80 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 80 (197)
|..+ ..+++.+|+..|..+++.+|. ++..+...|..+.. .|++++|+.+|+++++++
T Consensus 189 ~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~al~~~ 247 (368)
T 1fch_A 189 GSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL--------------------SGEYDKAVDCFTAALSVR 247 (368)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHC
T ss_pred HHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhC
Confidence 4455 889999999999999999999 78999988888776 499999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Q 029199 81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED------- 153 (197)
Q Consensus 81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~------- 153 (197)
|+++.+++++|.++.. .|++++|+.+|+++++++|+++.+++++|.++...|+ +++|+.+|+++++++|++
T Consensus 248 ~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~ 325 (368)
T 1fch_A 248 PNDYLLWNKLGATLAN-GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA-HREAVEHFLEALNMQRKSRGPRGEG 325 (368)
T ss_dssp TTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHTC------C
T ss_pred cCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCccccc
Confidence 9999999999988887 9999999999999999999999999999999999885 999999999999999998
Q ss_pred ----HHHHHHHHHHHHHcCCccccccCCCc
Q 029199 154 ----SHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 154 ----~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
+.+|.++|.++..+|++++|...+++
T Consensus 326 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 326 GAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 89999999999999999999777665
No 29
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.81 E-value=7e-21 Score=142.04 Aligned_cols=155 Identities=12% Similarity=0.041 Sum_probs=137.1
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|.++-..|++.+|+..|..+++.+|+++..++..|..+.. .|++++|+..|+++++.+|
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~--------------------~g~~~~A~~~~~~a~~~~p- 71 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLE--------------------TKQFELAQELLATIPLEYQ- 71 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHH--------------------TTCHHHHHHHHTTCCGGGC-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHhhhccC-
Confidence 4567788999999999999999999999999999998876 4999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHH
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED--SHVHASY 160 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l 160 (197)
++.++..++.+.....++..+|+..|+++++++|+++.+++++|.++...|+ +++|+.+|+++++++|++ +.++.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~a~~~l 150 (176)
T 2r5s_A 72 DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR-DEEALELLWNILKVNLGAQDGEVKKTF 150 (176)
T ss_dssp CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCTTTTTTHHHHHH
T ss_pred ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHHhCcccChHHHHHHH
Confidence 8887776664433323445568999999999999999999999999999885 999999999999999976 6699999
Q ss_pred HHHHHHcCCccccccCCCc
Q 029199 161 AGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 161 a~~~~~~g~~~ea~~~~~~ 179 (197)
+.++..+|+.++|...|++
T Consensus 151 ~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 151 MDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHH
Confidence 9999999999999888776
No 30
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.81 E-value=2.6e-19 Score=137.91 Aligned_cols=133 Identities=9% Similarity=0.034 Sum_probs=123.8
Q ss_pred CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCHHHH
Q 029199 26 GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENP-GNPLFLSNYAQFLYQSKQDLPKA 104 (197)
Q Consensus 26 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~l~~~~g~~~~A 104 (197)
.+.+|..++..|..+.. .|++++|+..|+++++++| .+..+++++|.++.. .|++++|
T Consensus 3 ~~~~~~~~~~~g~~~~~--------------------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~A 61 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALN--------------------AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADN-IKKYKEA 61 (228)
T ss_dssp -CCCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH-TTCHHHH
T ss_pred cccCHHHHHHHHHHHHH--------------------ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-hhcHHHH
Confidence 45678899999988776 4999999999999999999 999999999988887 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCccccccCC
Q 029199 105 EEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS-------HVHASYAGFLWETEEDNDECDAP 177 (197)
Q Consensus 105 ~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~ea~~~~ 177 (197)
+.+|+++++++|+++.++.++|.++..+|+ +++|+.+|+++++++|+++ .++.++|.++..+|++++|+..|
T Consensus 62 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 140 (228)
T 4i17_A 62 ADYFDIAIKKNYNLANAYIGKSAAYRDMKN-NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENY 140 (228)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHH
Confidence 999999999999999999999999999885 9999999999999999999 67999999999999999999999
Q ss_pred Ccc
Q 029199 178 SEL 180 (197)
Q Consensus 178 ~~~ 180 (197)
++.
T Consensus 141 ~~a 143 (228)
T 4i17_A 141 KHA 143 (228)
T ss_dssp HHH
T ss_pred HHH
Confidence 885
No 31
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.81 E-value=7.8e-20 Score=131.85 Aligned_cols=130 Identities=13% Similarity=0.016 Sum_probs=112.4
Q ss_pred hhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199 17 WNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQ 96 (197)
Q Consensus 17 ~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~ 96 (197)
..|..+++.+|+++..++..|..+.. .|++++|+..|++++.++|+++.+|+++|.++..
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~--------------------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 64 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQ--------------------AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS 64 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHH--------------------HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 45677788899999999999988766 4999999999999999999999999999988877
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 029199 97 SKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETE 168 (197)
Q Consensus 97 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 168 (197)
.|++++|+.+|+++++++|+++.+++++|.++..+|+ +++|+.+|+++++++|+++........+...++
T Consensus 65 -~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 134 (142)
T 2xcb_A 65 -LGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGD-LDGAESGFYSARALAAAQPAHEALAARAGAMLE 134 (142)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred -HhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999885 999999999999999998877666655554443
No 32
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.81 E-value=7.6e-20 Score=138.83 Aligned_cols=156 Identities=12% Similarity=0.044 Sum_probs=138.5
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|.++-..|++.+|+..|..+++.+|.++..+...|..+.. .|++++|+++|+++++.+|+
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~A~~~~~~a~~~~~~ 74 (225)
T 2vq2_A 15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQY--------------------LKVNDKAQESFRQALSIKPD 74 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHH--------------------cCChHHHHHHHHHHHHhCCC
Confidence 5667788899999999999999999999999998888766 38999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 029199 83 NPLFLSNYAQFLYQSK-QDLPKAEEYYSRAIL--ADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHAS 159 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~-g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 159 (197)
+..++..+|.++.. . |++++|+.+|+++++ .+|.++.++.++|.++...|+ +++|+.+|+++++.+|+++.++..
T Consensus 75 ~~~~~~~l~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~ 152 (225)
T 2vq2_A 75 SAEINNNYGWFLCG-RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ-FGLAEAYLKRSLAAQPQFPPAFKE 152 (225)
T ss_dssp CHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ChHHHHHHHHHHHH-hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCchHHHH
Confidence 99999999977776 8 999999999999998 677778999999999988774 899999999999999999999999
Q ss_pred HHHHHHHcCCccccccCCCcc
Q 029199 160 YAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 160 la~~~~~~g~~~ea~~~~~~~ 180 (197)
+|.++..+|++++|...++++
T Consensus 153 la~~~~~~~~~~~A~~~~~~~ 173 (225)
T 2vq2_A 153 LARTKMLAGQLGDADYYFKKY 173 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999998887774
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=3.6e-20 Score=143.44 Aligned_cols=156 Identities=19% Similarity=0.148 Sum_probs=141.9
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCC-------hhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVG-------QEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKK 75 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 75 (197)
|.++...+++.+|+..|..+++..|.+ +..++..|..+... |++++|+.+|++
T Consensus 45 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------------~~~~~A~~~~~~ 104 (258)
T 3uq3_A 45 AAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL--------------------GDLKKTIEYYQK 104 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHc--------------------ccHHHHHHHHHH
Confidence 567788899999999999999998877 68888888877663 888888888888
Q ss_pred HHH--------------------------hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 029199 76 MVE--------------------------ENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLV 129 (197)
Q Consensus 76 al~--------------------------~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l 129 (197)
+++ .+|+++.++..+|.++.. .|++++|+.+|+++++++|+++.++.++|.++
T Consensus 105 a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 183 (258)
T 3uq3_A 105 SLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT-KSDWPNAVKAYTEMIKRAPEDARGYSNRAAAL 183 (258)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 888 778888999999988887 99999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 130 WELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 130 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
...|+ +++|+.+|+++++.+|+++.++..+|.++..+|++++|...+++.
T Consensus 184 ~~~~~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 184 AKLMS-FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhCC-HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99884 999999999999999999999999999999999999999888874
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=3.5e-19 Score=142.38 Aligned_cols=156 Identities=13% Similarity=0.054 Sum_probs=145.9
Q ss_pred Cc-chhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCC
Q 029199 3 GT-ALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENP 81 (197)
Q Consensus 3 ~~-~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P 81 (197)
|. ++...+++.+|+..|..+++..|.++..+...|..+.. .|++++|+++|+++++.+|
T Consensus 144 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--------------------~~~~~~A~~~~~~~~~~~~ 203 (327)
T 3cv0_A 144 EDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNL--------------------SNNYDSAAANLRRAVELRP 203 (327)
T ss_dssp --CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCT
T ss_pred HhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--------------------hccHHHHHHHHHHHHHhCC
Confidence 44 68899999999999999999999999999999988776 3999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------
Q 029199 82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPE--------- 152 (197)
Q Consensus 82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~--------- 152 (197)
+++.++..+|.++.. .|++++|+..|+++++++|+++.++.++|.++...|+ +++|+.+|+++++++|+
T Consensus 204 ~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~ 281 (327)
T 3cv0_A 204 DDAQLWNKLGATLAN-GNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ-YDLAAKQLVRAIYMQVGGTTPTGEAS 281 (327)
T ss_dssp TCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTSCC-----C
T ss_pred CcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCccccccccch
Confidence 999999999988887 9999999999999999999999999999999999885 99999999999999999
Q ss_pred ---CHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 153 ---DSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 153 ---~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
++.++..++.++..+|++++|...+++.
T Consensus 282 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 282 REATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred hhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 8999999999999999999998888874
No 35
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.80 E-value=3.1e-19 Score=136.81 Aligned_cols=130 Identities=14% Similarity=0.171 Sum_probs=113.7
Q ss_pred ChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHH
Q 029199 29 GQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSN----------------YAQ 92 (197)
Q Consensus 29 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~----------------la~ 92 (197)
++..++.+|..+.. .|++++|+.+|+++++++|+++.+|+. +|.
T Consensus 3 ~~~~~~~~g~~~~~--------------------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~ 62 (208)
T 3urz_A 3 SVDEMLQKVSAAIE--------------------AGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62 (208)
T ss_dssp CHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHH
Confidence 45556777776655 499999999999999999999999999 998
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcc-
Q 029199 93 FLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDN- 171 (197)
Q Consensus 93 ~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~- 171 (197)
++.. .|++++|+.+|+++++++|+++.+++++|.++...|+ +++|+.+|+++++++|+++.+++++|.++...|+.+
T Consensus 63 ~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 63 AYKK-NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQ-EKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHH
Confidence 8877 9999999999999999999999999999999999885 999999999999999999999999999998877544
Q ss_pred -ccccCCCcc
Q 029199 172 -DECDAPSEL 180 (197)
Q Consensus 172 -ea~~~~~~~ 180 (197)
++...+..+
T Consensus 141 ~~~~~~~~~~ 150 (208)
T 3urz_A 141 KKLETDYKKL 150 (208)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 345555554
No 36
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1e-18 Score=122.89 Aligned_cols=119 Identities=17% Similarity=0.101 Sum_probs=108.3
Q ss_pred CCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 029199 27 TVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEE 106 (197)
Q Consensus 27 p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~ 106 (197)
|.+++.++..|..+.. .|++++|+..|+++++++|+++.+|+++|.++.. .|++++|+.
T Consensus 1 p~~a~~~~~~g~~~~~--------------------~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~ 59 (126)
T 3upv_A 1 SMKAEEARLEGKEYFT--------------------KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIA 59 (126)
T ss_dssp CHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred CchHHHHHHHHHHHHH--------------------hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCHHHHHH
Confidence 3456677777777655 4999999999999999999999999999988887 999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHc
Q 029199 107 YYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS------PEDSHVHASYAGFLWET 167 (197)
Q Consensus 107 ~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~ 167 (197)
+|+++++++|+++.+++++|.++..+|+ +++|+.+|+++++++ |+++.++..+..+..++
T Consensus 60 ~~~~al~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 60 DCNKAIEKDPNFVRAYIRKATAQIAVKE-YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999885 999999999999999 99999999999887654
No 37
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=2.7e-19 Score=144.43 Aligned_cols=172 Identities=10% Similarity=-0.067 Sum_probs=125.6
Q ss_pred hHHHHHHHHhhhcCccccc--CCCChhhHHhhhcccCCCCCCCCC---CCCCCCCC------cccCCCCCHHHHHHHHHH
Q 029199 7 SEEVKVMEALWNAGFEQER--GTVGQEMYLAKGLGVGGRGGRGGG---TGGGGSGF------YPAGSGGDSQGVEEYYKK 75 (197)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~------~~~~~~g~~~~A~~~~~~ 75 (197)
...++..+|+..|..+++. +|+++..++..|..+...|.+.+. -..|.+.. ..+...|++++|++.|++
T Consensus 76 ~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 76 ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3344555566655554433 466666666666555544442210 00022111 123346999999999999
Q ss_pred HHHhCCCCHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 029199 76 MVEENPGNPLFLSNYA--QFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED 153 (197)
Q Consensus 76 al~~~P~~~~~~~~la--~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~ 153 (197)
+++.+|++.......+ .++.. .|++++|+.+|+++++.+|+++.+++++|.++..+|+ +++|+.+|+++++++|++
T Consensus 156 ~~~~~p~~~~~~l~~a~~~l~~~-~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~eA~~~l~~al~~~p~~ 233 (291)
T 3mkr_A 156 MQDQDEDATLTQLATAWVSLAAG-GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR-WEAAEGVLQEALDKDSGH 233 (291)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC
T ss_pred HHhhCcCcHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC
Confidence 9999999875544333 22233 5899999999999999999999999999999999885 999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcccc-ccCCCcc
Q 029199 154 SHVHASYAGFLWETEEDNDE-CDAPSEL 180 (197)
Q Consensus 154 ~~~~~~la~~~~~~g~~~ea-~~~~~~~ 180 (197)
+.++.++|.++..+|+.+++ ...++++
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999999875 4566653
No 38
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=145.08 Aligned_cols=175 Identities=12% Similarity=0.079 Sum_probs=129.1
Q ss_pred cchhHHH-HHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCC------CcccCCCCCHHH
Q 029199 4 TALSEEV-KVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSG------FYPAGSGGDSQG 68 (197)
Q Consensus 4 ~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~------~~~~~~~g~~~~ 68 (197)
.++...+ ++.+|+..|..+++.+|.++..++..|..+...|.+.. ....|... +..+...|++++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 3444444 55555555555555556555555555555444433211 00112111 112233589999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHHcCCHHHH
Q 029199 69 VEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD---------PGDGEILSQYAKLVWELHNDQDRA 139 (197)
Q Consensus 69 A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~---------P~~~~~~~~lg~~l~~~~~~~~~A 139 (197)
|++.|+++++.+|+++.++..+|.++.. .|++++|+.+|++++++. |.++.++.++|.++...|+ +++|
T Consensus 178 A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A 255 (330)
T 3hym_B 178 AERFFSQALSIAPEDPFVMHEVGVVAFQ-NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK-YAEA 255 (330)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC-HHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHH-cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC-HHHH
Confidence 9999999999999999999999977777 899999999999999886 7778899999999888774 8999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 140 ATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 140 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+.+|+++++++|+++.++.++|.++..+|++++|...+++.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888875
No 39
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.80 E-value=3.4e-19 Score=155.28 Aligned_cols=150 Identities=15% Similarity=0.105 Sum_probs=124.3
Q ss_pred HHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 029199 9 EVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLS 88 (197)
Q Consensus 9 ~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~ 88 (197)
.+++.+|+..|..+++.+|+++..++..|..+.. .|++++|++.|+++++++|+++.++.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--------------------~g~~~~A~~~~~~al~~~p~~~~~~~ 61 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELG--------------------MGDTTAGEMAVQRGLALHPGHPEAVA 61 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHH--------------------HTCHHHHHHHHHHHHTTSTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3678999999999999999999999999988776 39999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-
Q 029199 89 NYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWET- 167 (197)
Q Consensus 89 ~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~- 167 (197)
++|.++.. .|++++|+.+|+++++++|+++.+++++|.++...|+ +++|+++|+++++++|+++.++.+++.++..+
T Consensus 62 ~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 139 (568)
T 2vsy_A 62 RLGRVRWT-QQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQ-AEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC 139 (568)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH-CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence 99988887 9999999999999999999999999999999999885 99999999999999999999999999999999
Q ss_pred --CCccccccCCCcc
Q 029199 168 --EEDNDECDAPSEL 180 (197)
Q Consensus 168 --g~~~ea~~~~~~~ 180 (197)
|++++|...+++.
T Consensus 140 ~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 140 DWRALDVLSAQVRAA 154 (568)
T ss_dssp CCTTHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHH
Confidence 9999998887774
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.80 E-value=1.4e-19 Score=140.54 Aligned_cols=156 Identities=15% Similarity=0.198 Sum_probs=125.4
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|.++-..+++.+|+..|..+++.+|.++..++..|..+... |++++|++.|+++++.+|+
T Consensus 44 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--------------------~~~~~A~~~~~~a~~~~~~ 103 (252)
T 2ho1_A 44 GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTE--------------------MEPKLADEEYRKALASDSR 103 (252)
T ss_dssp HHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHHCcC
Confidence 44566677788888888888888888888888888776653 7888888888888888888
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAIL--ADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASY 160 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 160 (197)
+..++..+|.++.. .|++++|+.+|+++++ .+|.++.++.++|.++...|+ +++|+.+|+++++.+|+++.++..+
T Consensus 104 ~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l 181 (252)
T 2ho1_A 104 NARVLNNYGGFLYE-QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK-PAQAKEYFEKSLRLNRNQPSVALEM 181 (252)
T ss_dssp CHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred cHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCcccHHHHHHH
Confidence 88888888877666 8888888888888888 778888888888888888774 8888888888888888888888888
Q ss_pred HHHHHHcCCccccccCCCcc
Q 029199 161 AGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 161 a~~~~~~g~~~ea~~~~~~~ 180 (197)
|.++..+|++++|...++++
T Consensus 182 a~~~~~~g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 182 ADLLYKEREYVPARQYYDLF 201 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 88888888888887766664
No 41
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=1.8e-19 Score=144.25 Aligned_cols=155 Identities=14% Similarity=0.019 Sum_probs=128.9
Q ss_pred cchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCC-CHHHHHHHHHHHHHhCCC
Q 029199 4 TALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGG-DSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~P~ 82 (197)
.++-..+++.+|+..+..+++.+|.++..++..|..+.. .| ++++|+++|+++++++|+
T Consensus 64 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~~A~~~~~~a~~~~~~ 123 (330)
T 3hym_B 64 GTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLM--------------------VGHKNEHARRYLSKATTLEKT 123 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH--------------------SCSCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH--------------------hhhhHHHHHHHHHHHHHhCCc
Confidence 344556667777777777777777777777777766555 36 889999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG 162 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 162 (197)
++.+|..+|.++.. .|++++|+..|+++++++|+++.++..+|.++...| ++++|+.+|+++++.+|+++.++..+|.
T Consensus 124 ~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~l~~ 201 (330)
T 3hym_B 124 YGPAWIAYGHSFAV-ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN-NSKLAERFFSQALSIAPEDPFVMHEVGV 201 (330)
T ss_dssp CTHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 99999999977777 899999999999999999999999999999988877 4899999999999999999999999999
Q ss_pred HHHHcCCccccccCCCcc
Q 029199 163 FLWETEEDNDECDAPSEL 180 (197)
Q Consensus 163 ~~~~~g~~~ea~~~~~~~ 180 (197)
++..+|++++|...+++.
T Consensus 202 ~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 202 VAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHH
Confidence 999999999988777764
No 42
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.79 E-value=1.8e-19 Score=148.14 Aligned_cols=143 Identities=14% Similarity=0.044 Sum_probs=131.9
Q ss_pred HHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCC------
Q 029199 10 VKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGN------ 83 (197)
Q Consensus 10 ~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~------ 83 (197)
+.+.+|+..+....+.+|.++..+...|..+.. .|++++|+.+|+++++++|++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~--------------------~g~~~~A~~~y~~Al~~~p~~~~~~~~ 186 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFK--------------------EGKYKQALLQYKKIVSWLEYESSFSNE 186 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHH--------------------HTCHHHHHHHHHHHHHHTTTCCCCCSH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHHHhhccccCChH
Confidence 445567777778778888899999999988876 499999999999999999999
Q ss_pred ---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 029199 84 ---------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS 154 (197)
Q Consensus 84 ---------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~ 154 (197)
..+|+++|.++.. +|++++|+.+|+++++++|+++.+++++|.++..+++ +++|+.+|+++++++|+++
T Consensus 187 ~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~~~ 264 (336)
T 1p5q_A 187 EAQKAQALRLASHLNLAMCHLK-LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND-FELARADFQKVLQLYPNNK 264 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCH
Confidence 6999999988887 9999999999999999999999999999999999885 9999999999999999999
Q ss_pred HHHHHHHHHHHHcCCccccc
Q 029199 155 HVHASYAGFLWETEEDNDEC 174 (197)
Q Consensus 155 ~~~~~la~~~~~~g~~~ea~ 174 (197)
.++.+++.++..+|+++++.
T Consensus 265 ~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 265 AAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999883
No 43
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.79 E-value=8.8e-20 Score=133.15 Aligned_cols=109 Identities=13% Similarity=-0.006 Sum_probs=103.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 029199 70 EEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHA 149 (197)
Q Consensus 70 ~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~ 149 (197)
-..|++++.++|++..+++++|.+++. .|++++|+..|+++++++|+++.+|+++|.++...|+ +++|+.+|++++++
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l 84 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQ-SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ-YDLAIHSYSYGAVM 84 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHH-cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhc
Confidence 356889999999999999999988887 9999999999999999999999999999999999885 99999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 150 SPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 150 ~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+|+++.+++++|.++..+|++++|...|++.
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999998875
No 44
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.79 E-value=4.5e-19 Score=134.30 Aligned_cols=156 Identities=12% Similarity=0.013 Sum_probs=127.1
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|......++++++...+.+..+..+..+..+...|..+.. .|++++|+..|++++++.|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--------------------~~~~~~A~~~~~~al~~~~~ 70 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFK--------------------KNEINEAIVKYKEALDFFIH 70 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHTTTT
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHHHhc
Confidence 4566777888888888888777777778888888887765 49999999999999999999
Q ss_pred CH----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029199 83 NP----------------LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERA 146 (197)
Q Consensus 83 ~~----------------~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~a 146 (197)
++ .++.++|.++.. .|++++|+.+|+++++++|+++.+++++|.++..+++ +++|+.+|+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~a 148 (198)
T 2fbn_A 71 TEEWDDQILLDKKKNIEISCNLNLATCYNK-NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF-LEEAKENLYKA 148 (198)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccc-HHHHHHHHHHH
Confidence 98 899999988887 9999999999999999999999999999999999885 99999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCccccc-cCCCcc
Q 029199 147 VHASPEDSHVHASYAGFLWETEEDNDEC-DAPSEL 180 (197)
Q Consensus 147 l~~~p~~~~~~~~la~~~~~~g~~~ea~-~~~~~~ 180 (197)
++++|+++.++..++.++..+++..++. ..+..+
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998876 444443
No 45
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.79 E-value=1.9e-20 Score=167.23 Aligned_cols=144 Identities=13% Similarity=0.005 Sum_probs=134.1
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|.++-+.|++.+|+..|..+++.+|+++..++..|..+... |++++|++.|+++++++|+
T Consensus 440 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--------------------g~~~~A~~~~~~al~l~P~ 499 (681)
T 2pzi_A 440 VRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT--------------------GDYDSATKHFTEVLDTFPG 499 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------------------TCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHhCCC
Confidence 66788999999999999999999999999999999998774 9999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG 162 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 162 (197)
++.+|+++|.++.. .|++++ +.+|+++++++|+++.+++++|.++..+|+ +++|+++|+++++++|+++.+++++|.
T Consensus 500 ~~~~~~~lg~~~~~-~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~~~~a~~~~~~ 576 (681)
T 2pzi_A 500 ELAPKLALAATAEL-AGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD-RVGAVRTLDEVPPTSRHFTTARLTSAV 576 (681)
T ss_dssp CSHHHHHHHHHHHH-HTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHTSCTTSTTHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH-cCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCC-HHHHHHHHHhhcccCcccHHHHHHHHH
Confidence 99999999988877 999999 999999999999999999999999999885 999999999999999999999999999
Q ss_pred HHHHcCC
Q 029199 163 FLWETEE 169 (197)
Q Consensus 163 ~~~~~g~ 169 (197)
++...++
T Consensus 577 ~~~~~~~ 583 (681)
T 2pzi_A 577 TLLSGRS 583 (681)
T ss_dssp HTC----
T ss_pred HHHccCC
Confidence 9988666
No 46
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.79 E-value=4.4e-18 Score=118.27 Aligned_cols=126 Identities=19% Similarity=0.254 Sum_probs=115.8
Q ss_pred ccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH
Q 029199 24 ERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPK 103 (197)
Q Consensus 24 ~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~ 103 (197)
+.+|.++..++..|..... .|++++|+..|+++++.+|+++.++..+|.++.. .|++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~--------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~ 64 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMK--------------------VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK-LGNYAG 64 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred hcchhhhHHHHHHHHHHHH--------------------ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hhchHH
Confidence 4566778888888887765 4999999999999999999999999999988877 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcc
Q 029199 104 AEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDN 171 (197)
Q Consensus 104 A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 171 (197)
|+.+|+++++++|+++.+++.+|.++...++ +++|+.+|+++++++|+++.++..++.++..+|+++
T Consensus 65 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 65 AVQDCERAICIDPAYSKAYGRMGLALSSLNK-HVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCccCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999884 999999999999999999999999999999999864
No 47
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=9.9e-19 Score=142.52 Aligned_cols=175 Identities=11% Similarity=0.039 Sum_probs=89.7
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCCC------cccCCCCCHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSGF------YPAGSGGDSQG 68 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~------~~~~~~g~~~~ 68 (197)
|.++-..|++.+|+..|..+++.+|.++..++..|..+...|.+.. ....|.... ..+...|++++
T Consensus 71 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 150 (368)
T 1fch_A 71 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQ 150 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4455666777777777777777777777777777766655422111 001111110 11122355555
Q ss_pred HHHHHHHHHHhCCC---------------------------------------------------CHHHHHHHHHHHHHh
Q 029199 69 VEEYYKKMVEENPG---------------------------------------------------NPLFLSNYAQFLYQS 97 (197)
Q Consensus 69 A~~~~~~al~~~P~---------------------------------------------------~~~~~~~la~~l~~~ 97 (197)
|++.|+++++++|+ ++.++.++|.++..
T Consensus 151 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~- 229 (368)
T 1fch_A 151 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL- 229 (368)
T ss_dssp HHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH-
Confidence 55555555544433 33444444544443
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCC
Q 029199 98 KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAP 177 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~ 177 (197)
.|++++|+.+|+++++++|+++.++.++|.++...|+ +++|+.+|+++++++|+++.+++++|.++..+|++++|...+
T Consensus 230 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 308 (368)
T 1fch_A 230 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ-SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 308 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4555555555555555555555555555555555442 555555555555555555555555555555555555555444
Q ss_pred Cc
Q 029199 178 SE 179 (197)
Q Consensus 178 ~~ 179 (197)
++
T Consensus 309 ~~ 310 (368)
T 1fch_A 309 LE 310 (368)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 48
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.9e-19 Score=139.37 Aligned_cols=155 Identities=15% Similarity=0.116 Sum_probs=143.9
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|.++-..+++.+|+..|..+++.+ .++..++..|..+... |++++|+++|+++++++|+
T Consensus 12 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~--------------------~~~~~A~~~~~~a~~~~~~ 70 (258)
T 3uq3_A 12 GNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEK--------------------GEYETAISTLNDAVEQGRE 70 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHc--------------------ccHHHHHHHHHHHHHhCcc
Confidence 667778899999999999999999 8999999999888774 9999999999999999998
Q ss_pred C-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHH
Q 029199 83 N-------PLFLSNYAQFLYQSKQDLPKAEEYYSRAIL--------------------------ADPGDGEILSQYAKLV 129 (197)
Q Consensus 83 ~-------~~~~~~la~~l~~~~g~~~~A~~~~~~al~--------------------------l~P~~~~~~~~lg~~l 129 (197)
+ +.++..+|.++.. .|++++|+.+|+++++ .+|.++.++.++|.++
T Consensus 71 ~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 71 MRADYKVISKSFARIGNAYHK-LGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEY 149 (258)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 7 7999999988887 9999999999999999 7788889999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 130 WELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 130 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
...|+ +++|+.+|+++++.+|+++.++.++|.++..+|++++|...+++.
T Consensus 150 ~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 150 FTKSD-WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcC-HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99885 999999999999999999999999999999999999999888875
No 49
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.78 E-value=3.8e-19 Score=143.51 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=115.7
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|.++-..|++.+|+..|..+++.+|+++..++..|..+... |++++|+..|+++++++|+
T Consensus 10 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~--------------------~~~~~A~~~~~~~~~~~~~ 69 (359)
T 3ieg_A 10 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAM--------------------GKSKAALPDLTKVIALKMD 69 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------------------TCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc--------------------cCHHHHHHHHHHHHHhCCC
Confidence 56677788889999999988888999998888888887664 7777777777777777777
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHHcCCHHHHHHHHHHHH
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADP---GDGEILSQY------------AKLVWELHNDQDRAATYYERAV 147 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P---~~~~~~~~l------------g~~l~~~~~~~~~A~~~~~~al 147 (197)
++.++..+|.++.. .|++++|+..|+++++++| +++.++..+ |.++...| ++++|+.+|++++
T Consensus 70 ~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~ 147 (359)
T 3ieg_A 70 FTAARLQRGHLLLK-QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA-DYTAAITFLDKIL 147 (359)
T ss_dssp CHHHHHHHHHHHHH-HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHH
Confidence 77777777766665 7777777777777777777 677776666 45666655 3677777777777
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 148 HASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 148 ~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+.+|+++.++..+|.++..+|++++|...++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 180 (359)
T 3ieg_A 148 EVCVWDAELRELRAECFIKEGEPRKAISDLKAA 180 (359)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777777777777777777777777776666553
No 50
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.78 E-value=2.9e-18 Score=126.12 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=108.9
Q ss_pred ccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH
Q 029199 24 ERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPK 103 (197)
Q Consensus 24 ~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~ 103 (197)
+.++.++..++..|..+.. .|++++|+++|+++++++|+++.+|+++|.+++. .|++++
T Consensus 5 ~~~~~~a~~~~~~g~~~~~--------------------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~ 63 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMA--------------------RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA-SGQHEK 63 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred chhhhhHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH-ccCHHH
Confidence 3456678888888888766 4999999999999999999999999999988887 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199 104 AEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWE 166 (197)
Q Consensus 104 A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 166 (197)
|+.+|+++++++|+++.+++++|.++..+|+ +++|+.+|+++++++|+++.+|++++....+
T Consensus 64 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 64 AAEDAELATVVDPKYSKAWSRLGLARFDMAD-YKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 9999999999999999999999999999885 9999999999999999999977776666443
No 51
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=1.1e-18 Score=139.37 Aligned_cols=176 Identities=11% Similarity=0.046 Sum_probs=150.1
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCC------------------
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSG------------------ 56 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~------------------ 56 (197)
|.++...+++.+|+..|..+++.+|.++..+...|..+...|.+.. ....|...
T Consensus 62 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (327)
T 3cv0_A 62 GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNV 141 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC----------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHH
Confidence 5567777888888888888888888888888888887766655321 01112211
Q ss_pred --Cc-ccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 029199 57 --FY-PAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELH 133 (197)
Q Consensus 57 --~~-~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~ 133 (197)
+. .+...|++++|++.|+++++.+|+++.++..+|.++.. .|++++|+.+|+++++.+|+++.++.++|.++...|
T Consensus 142 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 142 QSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNL-SNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN 220 (327)
T ss_dssp ----CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 11 35567999999999999999999999999999988877 999999999999999999999999999999999988
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 134 NDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 134 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+ +++|+.+|+++++.+|+++.++..+|.++..+|++++|...++++
T Consensus 221 ~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 266 (327)
T 3cv0_A 221 R-PQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA 266 (327)
T ss_dssp C-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5 999999999999999999999999999999999999999888875
No 52
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.77 E-value=4.2e-19 Score=137.42 Aligned_cols=157 Identities=10% Similarity=0.012 Sum_probs=139.4
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCCh---hhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHh
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQ---EMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEE 79 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 79 (197)
|..+-+.|++.+|+..|..+++..|.++ ..++..|..+.. .|++++|++.|+++++.
T Consensus 11 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~--------------------~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 11 AQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK--------------------NADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh--------------------cCCHHHHHHHHHHHHHH
Confidence 5677888999999999999999999875 678888888776 49999999999999999
Q ss_pred CCCCHH---HHHHHHHHHHH-----------------hcCCHHHHHHHHHHHHHhCCCCHHHH-----------------
Q 029199 80 NPGNPL---FLSNYAQFLYQ-----------------SKQDLPKAEEYYSRAILADPGDGEIL----------------- 122 (197)
Q Consensus 80 ~P~~~~---~~~~la~~l~~-----------------~~g~~~~A~~~~~~al~l~P~~~~~~----------------- 122 (197)
+|+++. +++.+|.+++. ..|++++|+..|+++++.+|+++.++
T Consensus 71 ~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~ 150 (225)
T 2yhc_A 71 NPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE 150 (225)
T ss_dssp CTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH
Confidence 999875 78889977664 14789999999999999999998765
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCccccccCCCcc
Q 029199 123 SQYAKLVWELHNDQDRAATYYERAVHASPEDS---HVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 123 ~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
..+|.+++..|+ +++|+..|+++++..|+++ .+++.+|.++.++|++++|++.++++
T Consensus 151 ~~~a~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 151 YSVAEYYTERGA-WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHHHTC-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCc-HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 578889999885 9999999999999999987 67999999999999999999888875
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.77 E-value=9.1e-19 Score=137.09 Aligned_cols=154 Identities=10% Similarity=0.032 Sum_probs=136.7
Q ss_pred CcchhHHHHHHHHhhhcCccccc----CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQER----GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVE 78 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 78 (197)
+.++...+++.+|+..|..+++. .|.++..++..|..+.. .|++++|+++|+++++
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~A~~~~~~al~ 71 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDS--------------------LGLRALARNDFSQALA 71 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHH
T ss_pred eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHH--------------------cccHHHHHHHHHHHHH
Confidence 45667789999999999999887 35677888888888766 4999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 029199 79 ENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHA 158 (197)
Q Consensus 79 ~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 158 (197)
++|+++.+|.++|.++.. .|++++|+.+|+++++++|+++.++.++|.++...|+ +++|+.+|+++++++|+++....
T Consensus 72 ~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~ 149 (275)
T 1xnf_A 72 IRPDMPEVFNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR-DKLAQDDLLAFYQDDPNDPFRSL 149 (275)
T ss_dssp HCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCCCcHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCChHHHH
Confidence 999999999999988887 9999999999999999999999999999999999885 99999999999999999997777
Q ss_pred HHHHHHHHcCCccccccCCCc
Q 029199 159 SYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 159 ~la~~~~~~g~~~ea~~~~~~ 179 (197)
.++.+ ...|++++|...+++
T Consensus 150 ~~~~~-~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 150 WLYLA-EQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHH-HHHHCHHHHHHHHHH
T ss_pred HHHHH-HHhcCHHHHHHHHHH
Confidence 66655 566899998877754
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.77 E-value=6.9e-19 Score=136.65 Aligned_cols=156 Identities=10% Similarity=0.056 Sum_probs=145.9
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHH--hC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVE--EN 80 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~ 80 (197)
|.++...+++.+|+..|..+++.+|.++..++..|..+.. .|++++|+++|+++++ .+
T Consensus 78 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~--------------------~g~~~~A~~~~~~~~~~~~~ 137 (252)
T 2ho1_A 78 AVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE--------------------QKRYEEAYQRLLEASQDTLY 137 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH--------------------HhHHHHHHHHHHHHHhCccC
Confidence 5567788999999999999999999999999999888766 4999999999999999 89
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199 81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASY 160 (197)
Q Consensus 81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 160 (197)
|.++.++..+|.++.. .|++++|+.+|+++++.+|.++.++..+|.++...|+ +++|+.+|+++++..|+++.++..+
T Consensus 138 ~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~ 215 (252)
T 2ho1_A 138 PERSRVFENLGLVSLQ-MKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE-YVPARQYYDLFAQGGGQNARSLLLG 215 (252)
T ss_dssp TTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred cccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 9999999999988887 9999999999999999999999999999999999884 9999999999999999999999999
Q ss_pred HHHHHHcCCccccccCCCcc
Q 029199 161 AGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 161 a~~~~~~g~~~ea~~~~~~~ 180 (197)
+.++...|++++|...++++
T Consensus 216 ~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 216 IRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHH
Confidence 99999999999998888875
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.77 E-value=6.8e-19 Score=137.98 Aligned_cols=175 Identities=10% Similarity=0.037 Sum_probs=146.6
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC----------CCCCCCC-------CCcccCCCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG----------GTGGGGS-------GFYPAGSGGD 65 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~----------~~~~~~~-------~~~~~~~~g~ 65 (197)
|..+-..+++.+|+..|..+++.+|.++..++..|..+...|.+.. ....+.. .+..+...|+
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc
Confidence 4566778889999999999999999999999998888776665322 1111221 1223455699
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHHcCCHHHHHHHHH
Q 029199 66 SQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYA-KLVWELHNDQDRAATYYE 144 (197)
Q Consensus 66 ~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg-~~l~~~~~~~~~A~~~~~ 144 (197)
+++|+++|+++++++|+++.++.++|.++.. .|++++|+.+|+++++++|+++.+++++| .++.. + ++++|+.+|+
T Consensus 90 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-~-~~~~A~~~~~ 166 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN-KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN-K-EYVKADSSFV 166 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT-T-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH-H-HHHHHHHHHH
Confidence 9999999999999999999999999988887 99999999999999999999999999999 55444 6 5999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCC---ccccccCCCcc
Q 029199 145 RAVHASPEDSHVHASYAGFLWETEE---DNDECDAPSEL 180 (197)
Q Consensus 145 ~al~~~p~~~~~~~~la~~~~~~g~---~~ea~~~~~~~ 180 (197)
++++++|+++.+++.+|.++..+|+ +++|...+++.
T Consensus 167 ~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 167 KVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 9999999999999999999999998 88887777764
No 56
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.77 E-value=3e-19 Score=140.56 Aligned_cols=156 Identities=15% Similarity=0.039 Sum_probs=133.8
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCC---hhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHh
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVG---QEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEE 79 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 79 (197)
|.++-+.|++.+|+..|..+++..|++ +..++..|..+.. .|++++|+..|++++++
T Consensus 22 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~--------------------~~~~~~A~~~~~~~l~~ 81 (261)
T 3qky_A 22 AMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ--------------------NKEYLLAASEYERFIQI 81 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH--------------------hCcHHHHHHHHHHHHHH
Confidence 566777889999999999999999998 8888888888776 48999999999999999
Q ss_pred CCCC---HHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHH
Q 029199 80 NPGN---PLFLSNYAQFLYQS--------KQDLPKAEEYYSRAILADPGDGEIL-----------------SQYAKLVWE 131 (197)
Q Consensus 80 ~P~~---~~~~~~la~~l~~~--------~g~~~~A~~~~~~al~l~P~~~~~~-----------------~~lg~~l~~ 131 (197)
+|++ +.+++.+|.+++ . .|++++|+..|+++++.+|+++.+. +++|.++..
T Consensus 82 ~p~~~~~~~a~~~lg~~~~-~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 160 (261)
T 3qky_A 82 YQIDPRVPQAEYERAMCYY-KLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER 160 (261)
T ss_dssp CTTCTTHHHHHHHHHHHHH-HHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHH-HhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8854 668889995554 4 7899999999999999999987776 888999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHc----------CCccccccCCCcc
Q 029199 132 LHNDQDRAATYYERAVHASPE---DSHVHASYAGFLWET----------EEDNDECDAPSEL 180 (197)
Q Consensus 132 ~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~ea~~~~~~~ 180 (197)
.|+ +++|+.+|+++++..|+ .+.+++.+|.++..+ |++++|...++++
T Consensus 161 ~g~-~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~ 221 (261)
T 3qky_A 161 REL-YEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERL 221 (261)
T ss_dssp TTC-HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred ccC-HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHH
Confidence 774 99999999999999988 567899999999977 8888888888775
No 57
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.77 E-value=2.6e-18 Score=138.58 Aligned_cols=175 Identities=10% Similarity=-0.007 Sum_probs=129.9
Q ss_pred cchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCCCc------ccCCCCCHHHH
Q 029199 4 TALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSGFY------PAGSGGDSQGV 69 (197)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~------~~~~~g~~~~A 69 (197)
.++...+++.+|+..|..+++..|.++..+...|..+...|.+.. ....|..... .+...|++++|
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 334444555555555555555555555555555544444333211 0112222111 12224999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHH------------HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHc
Q 029199 70 EEYYKKMVEENPGNPLFLSNY------------AQFLYQSKQDLPKAEEYYSRAILADPGDGEI----LSQYAKLVWELH 133 (197)
Q Consensus 70 ~~~~~~al~~~P~~~~~~~~l------------a~~l~~~~g~~~~A~~~~~~al~l~P~~~~~----~~~lg~~l~~~~ 133 (197)
++.|+++++.+|++..++..+ |.++.. .|++++|+..|+++++.+|+++.. +..+|.++...|
T Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 286 (359)
T 3ieg_A 208 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR-DGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDE 286 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHcc
Confidence 999999999999999977644 766777 999999999999999999999854 667899999988
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 134 NDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 134 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+ +++|+.+|+++++.+|+++.+++.+|.++..+|++++|...+++.
T Consensus 287 ~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 332 (359)
T 3ieg_A 287 K-PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAA 332 (359)
T ss_dssp C-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5 999999999999999999999999999999999999999998885
No 58
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.77 E-value=2.1e-18 Score=144.39 Aligned_cols=156 Identities=13% Similarity=0.130 Sum_probs=125.6
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|.++-..|++.+|+..|..+++.+|.++..++..|..+... |++++|+..|+++++++|+
T Consensus 33 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~--------------------g~~~~A~~~~~~al~~~p~ 92 (450)
T 2y4t_A 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAM--------------------GKSKAALPDLTKVIQLKMD 92 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHhcCCC
Confidence 45667788899999999999988999999999988887664 7888888888888888888
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHHcCCHHHHHHHHHHHH
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG---EILSQY------------AKLVWELHNDQDRAATYYERAV 147 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~l------------g~~l~~~~~~~~~A~~~~~~al 147 (197)
++.++..+|.++.. .|++++|+..|+++++++|+++ .++..+ |.++...|+ +++|+.+|++++
T Consensus 93 ~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~ 170 (450)
T 2y4t_A 93 FTAARLQRGHLLLK-QGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD-YTAAIAFLDKIL 170 (450)
T ss_dssp CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence 88888888877766 8888888888888888888877 666555 555777664 788888888888
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 148 HASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 148 ~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+.+|+++.++..+|.++...|++++|...++++
T Consensus 171 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 203 (450)
T 2y4t_A 171 EVCVWDAELRELRAECFIKEGEPRKAISDLKAA 203 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 888888888888888888888888887777764
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=2.4e-18 Score=139.11 Aligned_cols=157 Identities=13% Similarity=0.088 Sum_probs=135.5
Q ss_pred CcchhHHHHHHHHhhhcCcccc-cCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQE-RGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENP 81 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P 81 (197)
|......+++.+|+..|..+++ ..|+++.+|+..|..+.. .|++++|.+.|+++++++|
T Consensus 71 g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~--------------------~~~~~~A~~~~~~al~~~p 130 (308)
T 2ond_A 71 GDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES--------------------RMKYEKVHSIYNRLLAIED 130 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHTSSS
T ss_pred cchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh--------------------cCCHHHHHHHHHHHHhccc
Confidence 3334445667999999999999 699999999999988766 3899999999999999999
Q ss_pred CCHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199 82 GNPL-FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASY 160 (197)
Q Consensus 82 ~~~~-~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 160 (197)
+++. +|.++|.++.. .|++++|+..|+++++.+|.+..++...+.+.+...+++++|+.+|+++++.+|+++.+|.++
T Consensus 131 ~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 209 (308)
T 2ond_A 131 IDPTLVYIQYMKFARR-AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAY 209 (308)
T ss_dssp SCTHHHHHHHHHHHHH-HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCccHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 9987 89999987776 899999999999999999999888887776654433359999999999999999999999999
Q ss_pred HHHHHHcCCccccccCCCcc
Q 029199 161 AGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 161 a~~~~~~g~~~ea~~~~~~~ 180 (197)
+.++..+|++++|...|++.
T Consensus 210 ~~~~~~~g~~~~A~~~~~~a 229 (308)
T 2ond_A 210 IDYLSHLNEDNNTRVLFERV 229 (308)
T ss_dssp HHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 99999999999998888875
No 60
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.76 E-value=3e-19 Score=139.99 Aligned_cols=115 Identities=10% Similarity=0.121 Sum_probs=95.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHcCCHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGE----ILSQYAKLVWELHNDQDR 138 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~----~~~~lg~~l~~~~~~~~~ 138 (197)
.|++++|+..|+++++.+|+++.++..+|.+++. .|++++|+..|+++++ .|.++. ++.++|.++...|+ +++
T Consensus 16 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~-~~~ 92 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYE-LAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQ-DSL 92 (272)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHH-TTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTC-HHH
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHccc-HHH
Confidence 4888888888888888888888888888877776 8888888888888888 554444 48888888888774 888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 139 AATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 139 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
|+++|+++++++|+++.++.++|.++..+|++++|...+++.
T Consensus 93 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 93 AIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp HHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 888888888888888888888888888888888888877774
No 61
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.76 E-value=2.1e-19 Score=144.47 Aligned_cols=113 Identities=10% Similarity=0.050 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH----------------------------------H
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYY----------------------------------S 109 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~----------------------------------~ 109 (197)
|++++|+..|+++++++|+++.+++++|.++.. .|++++|+..| +
T Consensus 131 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~ 209 (287)
T 3qou_A 131 SNYTDALPLLXDAWQLSNQNGEIGLLLAETLIA-LNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQ 209 (287)
T ss_dssp TCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH-TTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH-CCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHH
Confidence 556666666666666666666666666655444 55555555554 4
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCccccccCCC
Q 029199 110 RAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED--SHVHASYAGFLWETEEDNDECDAPS 178 (197)
Q Consensus 110 ~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~ea~~~~~ 178 (197)
++++++|+++.+++++|.++...|+ +++|+..|+++++.+|++ +.++.+++.++..+|+.+++...|+
T Consensus 210 ~al~~~P~~~~~~~~la~~l~~~g~-~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r 279 (287)
T 3qou_A 210 QQVAENPEDAALATQLALQLHQVGR-NEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYR 279 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhcCCccHHHHHHHHHHHHHccc-HHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHH
Confidence 5555555555555555555555443 555555555555555555 5555555555555555555544444
No 62
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.76 E-value=2.8e-18 Score=130.13 Aligned_cols=156 Identities=12% Similarity=0.004 Sum_probs=143.9
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCC-CCHHHHHHHHHHHHH--h
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSG-GDSQGVEEYYKKMVE--E 79 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~--~ 79 (197)
|.++...+++.+|+..|..+++.+|.++..+...|..+.. . |++++|+..|+++++ .
T Consensus 49 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~~A~~~~~~~~~~~~ 108 (225)
T 2vq2_A 49 AEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG--------------------RLNRPAESMAYFDKALADPT 108 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT--------------------TTCCHHHHHHHHHHHHTSTT
T ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--------------------hcCcHHHHHHHHHHHHcCcC
Confidence 5667788999999999999999999999999998887765 6 899999999999999 7
Q ss_pred CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHH
Q 029199 80 NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASP-EDSHVHA 158 (197)
Q Consensus 80 ~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p-~~~~~~~ 158 (197)
+|.+..++.++|.++.. .|++++|+.+|+++++.+|+++.++..+|.++...|+ +++|+.+++++++.+| +++..+.
T Consensus 109 ~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~ 186 (225)
T 2vq2_A 109 YPTPYIANLNKGICSAK-QGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ-LGDADYYFKKYQSRVEVLQADDLL 186 (225)
T ss_dssp CSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred CcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCCHHHHH
Confidence 77789999999988877 9999999999999999999999999999999999885 9999999999999999 9999999
Q ss_pred HHHHHHHHcCCccccccCCCcc
Q 029199 159 SYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 159 ~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.++.++...|+.+++...++.+
T Consensus 187 ~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 187 LGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHH
Confidence 9999999999999998777765
No 63
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.76 E-value=9.2e-19 Score=126.18 Aligned_cols=108 Identities=9% Similarity=-0.033 Sum_probs=100.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 029199 71 EYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS 150 (197)
Q Consensus 71 ~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~ 150 (197)
..|+++++++|++..+++.+|..++. .|++++|+..|++++.++|+++.+|+++|.++...|+ +++|+.+|+++++++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQ-AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL-YEQALQSYSYGALMD 82 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcC
Confidence 57888899999999999999988887 9999999999999999999999999999999999885 999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 151 PEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 151 p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
|+++.+++++|.++..+|++++|...|++.
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999998885
No 64
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.76 E-value=2.2e-18 Score=149.26 Aligned_cols=175 Identities=14% Similarity=0.075 Sum_probs=128.3
Q ss_pred cchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCCC------cccCCCCCHHHH
Q 029199 4 TALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSGF------YPAGSGGDSQGV 69 (197)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~------~~~~~~g~~~~A 69 (197)
.++.+.|++.+|+..|..+++.+|.++..|...|..+...|...+ ....|.... ..+...|++++|
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHH
Confidence 344555555555555555555555555555555555444433211 011121111 122224899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 70 EEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA------DPGD-GEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 70 ~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l------~P~~-~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
++.|+++++.+|+++.+|..+|.++.. .|++++|++.|++++++ +|++ +.++..+|.++...|+ +++|++.
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~-~~~A~~~ 538 (597)
T 2xpi_A 461 NEYLQSSYALFQYDPLLLNELGVVAFN-KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM-YDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC-HHHHHHH
Confidence 999999999999999999999977777 89999999999999988 6665 7889999999988774 8999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
|+++++++|+++.+|..++.++...|++++|...++++
T Consensus 539 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 539 LNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999998888875
No 65
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.76 E-value=1.5e-18 Score=145.35 Aligned_cols=176 Identities=10% Similarity=-0.019 Sum_probs=142.8
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCC--------CCCCCCC------CcccCCCCCHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGG--------TGGGGSG------FYPAGSGGDSQG 68 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~------~~~~~~~g~~~~ 68 (197)
|.++.+.+++.+|+..|..+++..|.++..++..|..+..+|.+... ...|... +..+...|++++
T Consensus 150 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 150 ALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 44566667777777777777777777777777777666666554331 1122221 123344699999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHH------------HHHHHHhcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHH
Q 029199 69 VEEYYKKMVEENPGNPLFLSNY------------AQFLYQSKQDLPKAEEYYSRAILADPGDGE----ILSQYAKLVWEL 132 (197)
Q Consensus 69 A~~~~~~al~~~P~~~~~~~~l------------a~~l~~~~g~~~~A~~~~~~al~l~P~~~~----~~~~lg~~l~~~ 132 (197)
|++.|+++++++|++...+..+ |.++.. .|++++|+.+|+++++++|+++. ++.++|.++...
T Consensus 230 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~ 308 (450)
T 2y4t_A 230 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR-DGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD 308 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHC
Confidence 9999999999999999998777 877777 99999999999999999999965 788999999998
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 133 HNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 133 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
|+ +++|+.+|+++++++|+++.+|..+|.++..+|++++|...++++
T Consensus 309 g~-~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 355 (450)
T 2y4t_A 309 EK-PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETA 355 (450)
T ss_dssp TC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 85 999999999999999999999999999999999999999888885
No 66
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.76 E-value=9.3e-18 Score=117.44 Aligned_cols=123 Identities=15% Similarity=0.125 Sum_probs=111.7
Q ss_pred cCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 029199 25 RGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKA 104 (197)
Q Consensus 25 ~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A 104 (197)
..|.++..++..|..+.. .|++++|+++|+++++.+|++..+++++|.++.. .|++++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~--------------------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A 69 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQ--------------------KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK-LLEFQLA 69 (133)
T ss_dssp SSSCHHHHHHHHHHHHHH--------------------TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT-TTCHHHH
T ss_pred cCcccHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-hccHHHH
Confidence 455666777777776655 4999999999999999999999999999977776 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 029199 105 EEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEE 169 (197)
Q Consensus 105 ~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 169 (197)
+.+|+++++++|+++.+++++|.++...++ +++|+.+|+++++.+|++..++..++.++..+|+
T Consensus 70 ~~~~~~a~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 70 LKDCEECIQLEPTFIKGYTRKAAALEAMKD-YTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999885 9999999999999999999999999999998874
No 67
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.75 E-value=3.2e-18 Score=146.10 Aligned_cols=155 Identities=16% Similarity=0.165 Sum_probs=143.9
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|.++...+++.+|+..|..+++.+|. +..++..|..+.. .|++++|++.|+++++.+|+
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~--------------------~~~~~~A~~~~~~~~~~~~~ 308 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLAD--------------------KENSQEFFKFFQKAVDLNPE 308 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCC--------------------SSCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHH--------------------hcCHHHHHHHHHHHhccCCC
Confidence 44556667789999999999999999 8899988888766 49999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG 162 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 162 (197)
++.++..+|.++.. .|++++|+..|+++++++|+++.++.++|.++...|+ +++|+.+|+++++.+|+++.++..+|.
T Consensus 309 ~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~ 386 (537)
T 3fp2_A 309 YPPTYYHRGQMYFI-LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGK-FTESEAFFNETKLKFPTLPEVPTFFAE 386 (537)
T ss_dssp CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 99999999988887 9999999999999999999999999999999999885 999999999999999999999999999
Q ss_pred HHHHcCCccccccCCCcc
Q 029199 163 FLWETEEDNDECDAPSEL 180 (197)
Q Consensus 163 ~~~~~g~~~ea~~~~~~~ 180 (197)
++...|++++|...++++
T Consensus 387 ~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 387 ILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHH
Confidence 999999999999888875
No 68
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.75 E-value=5e-18 Score=147.05 Aligned_cols=116 Identities=11% Similarity=0.017 Sum_probs=109.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
.|++++|++.|+++++++|++..+|+.++.++.. .|++++|++.|+++++.+|+++.++..+|.++...|+ +++|+++
T Consensus 386 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~ 463 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAI-EGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGN-ILLANEY 463 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTC-HHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC-HHHHHHH
Confidence 5999999999999999999999999999988777 9999999999999999999999999999999999885 9999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
|+++++.+|+++.+|..++.++.+.|++++|...|+++
T Consensus 464 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 501 (597)
T 2xpi_A 464 LQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNA 501 (597)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999888886
No 69
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.75 E-value=5.3e-18 Score=125.78 Aligned_cols=116 Identities=9% Similarity=0.133 Sum_probs=87.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHHcCCH--HHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKL-VWELHNDQ--DRA 139 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~-l~~~~~~~--~~A 139 (197)
.|++++|+..|+++++.+|+++.+|+.+|.++.. .|++++|+.+|+++++++|+++.++.++|.+ +...+ ++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~-~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLW-QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS-QHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT-TCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC-CcchHHH
Confidence 4777778888888888888888888888866666 7888888888888888888888888888877 55555 46 788
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 140 ATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 140 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+.+|+++++.+|+++.+++++|.++..+|++++|...++++
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 141 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKV 141 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 88888888888888888888888888888888877777664
No 70
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.74 E-value=6.1e-18 Score=125.43 Aligned_cols=101 Identities=12% Similarity=0.083 Sum_probs=90.3
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 029199 59 PAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDL--PKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQ 136 (197)
Q Consensus 59 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~--~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~ 136 (197)
.+...|++++|+.+|+++++++|+++.++.++|.+++...|++ ++|+.+|+++++++|+++.+++++|.++...|+ +
T Consensus 53 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~ 131 (177)
T 2e2e_A 53 YYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQAN-Y 131 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-H
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc-H
Confidence 4455799999999999999999999999999998834338998 999999999999999999999999999999885 9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHH
Q 029199 137 DRAATYYERAVHASPEDSHVHASY 160 (197)
Q Consensus 137 ~~A~~~~~~al~~~p~~~~~~~~l 160 (197)
++|+.+|+++++++|+++.....+
T Consensus 132 ~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 132 AQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp HHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred HHHHHHHHHHHhhCCCCccHHHHH
Confidence 999999999999999987654433
No 71
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=3.7e-18 Score=137.70 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=96.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
.|++++|+..|+++++.+|+++.+|+++|.++.. .|++++|+..|+++++++|+++.++.++|.++...|+..+.+.++
T Consensus 179 ~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~ 257 (291)
T 3mkr_A 179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA-QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRY 257 (291)
T ss_dssp TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 4899999999999999999999999999977777 999999999999999999999999999999999999744457899
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCC
Q 029199 143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAP 177 (197)
Q Consensus 143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~ 177 (197)
++++++++|+++.+.. +..+.+.+++++..|
T Consensus 258 ~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 258 LSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 9999999999998753 455666666665444
No 72
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.74 E-value=1.9e-18 Score=147.70 Aligned_cols=142 Identities=15% Similarity=0.098 Sum_probs=125.9
Q ss_pred HHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCC-------
Q 029199 11 KVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGN------- 83 (197)
Q Consensus 11 ~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~------- 83 (197)
++.+|+..|.+..+..|..+..+...|..+.. .|++++|+.+|+++++++|++
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~--------------------~g~~~~A~~~y~~Al~~~p~~~~~~~~~ 308 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFK--------------------GGKYMQAVIQYGKIVSWLEMEYGLSEKE 308 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHHTTCCSCCHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHh--------------------CCCHHHHHHHHHHHHHHhcccccCChHH
Confidence 34566777777777788888899999988776 499999999999999999999
Q ss_pred --------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 029199 84 --------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSH 155 (197)
Q Consensus 84 --------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~ 155 (197)
..+|+++|.+++. +|++++|+.+|+++++++|+++.+++++|.++..+++ +++|+.+|+++++++|++..
T Consensus 309 ~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~-~~~A~~~~~~al~l~P~~~~ 386 (457)
T 1kt0_A 309 SKASESFLLAAFLNLAMCYLK-LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE-FESAKGDFEKVLEVNPQNKA 386 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTC----C
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHH
Confidence 7999999988887 9999999999999999999999999999999999885 99999999999999999999
Q ss_pred HHHHHHHHHHHcCCccccc
Q 029199 156 VHASYAGFLWETEEDNDEC 174 (197)
Q Consensus 156 ~~~~la~~~~~~g~~~ea~ 174 (197)
++.+++.++..+|+++++.
T Consensus 387 a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 387 ARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998874
No 73
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.74 E-value=1.8e-17 Score=117.29 Aligned_cols=127 Identities=14% Similarity=0.082 Sum_probs=110.5
Q ss_pred ccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH
Q 029199 24 ERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPK 103 (197)
Q Consensus 24 ~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~ 103 (197)
..+|.++..++..|..+.. .|++++|+.+|+++++++|+++.+|+++|.++.. .|++++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~--------------------~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~ 61 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFV--------------------GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQ 61 (137)
T ss_dssp ---CCCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred CCccccHHHHHHHHHHHHH--------------------hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH-hcCHHH
Confidence 3467788888888888766 4999999999999999999999999999988887 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCccc
Q 029199 104 AEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPE-----DSHVHASYAGFLWETEEDND 172 (197)
Q Consensus 104 A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~e 172 (197)
|+.+|+++++++|+++.+++++|.++...|+ +++|+.+|+++++++|+ +..++..+..+..+.+...+
T Consensus 62 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~e 134 (137)
T 3q49_B 62 ALADCRRALELDGQSVKAHFFLGQCQLEMES-YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE 134 (137)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999885 99999999999999998 78888888887766554433
No 74
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.74 E-value=1.9e-17 Score=116.74 Aligned_cols=91 Identities=12% Similarity=0.046 Sum_probs=80.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
.|++++|+..|+++++++|+++.+|+.+|.++.. .|++++|+.+|+++++++|+++.+++++|.++...|+ +++|+.+
T Consensus 30 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~-~~~A~~~ 107 (121)
T 1hxi_A 30 LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN-ANAALAS 107 (121)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 4999999999999999999999999999988777 9999999999999999999999999999999999995 9999999
Q ss_pred HHHHHHhCCCCHH
Q 029199 143 YERAVHASPEDSH 155 (197)
Q Consensus 143 ~~~al~~~p~~~~ 155 (197)
|+++++++|+++.
T Consensus 108 ~~~al~~~P~~~~ 120 (121)
T 1hxi_A 108 LRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHC-------
T ss_pred HHHHHHhCcCCCC
Confidence 9999999998764
No 75
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.74 E-value=2e-17 Score=121.97 Aligned_cols=100 Identities=17% Similarity=0.216 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDL----------PKAEEYYSRAILADPGDGEILSQYAKLVWEL 132 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~----------~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~ 132 (197)
.+.+++|++.|+++++++|+++.+|+++|.++.. .+++ ++|+..|++||+++|+++.+++++|.+|..+
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~-l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE-LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999988777 7764 5999999999999999999999999999987
Q ss_pred c----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 133 H----------NDQDRAATYYERAVHASPEDSHVHASYAGF 163 (197)
Q Consensus 133 ~----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 163 (197)
| +++++|+++|++|++++|++...+..+..+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 5 259999999999999999998877766544
No 76
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.74 E-value=1.4e-16 Score=109.61 Aligned_cols=121 Identities=23% Similarity=0.373 Sum_probs=108.6
Q ss_pred CCCC-hhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 029199 26 GTVG-QEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKA 104 (197)
Q Consensus 26 ~p~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A 104 (197)
+|.. +..++..|..+.. .|++++|++.|+++++.+|+++.++..+|.++.. .|++++|
T Consensus 4 ~~~~~~~~~~~~~~~~~~--------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A 62 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYK--------------------QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEA 62 (125)
T ss_dssp ---CHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHH
T ss_pred CccccHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH-hCCHHHH
Confidence 4544 6777777776655 4999999999999999999999999999988877 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 029199 105 EEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETE 168 (197)
Q Consensus 105 ~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 168 (197)
+..|+++++++|+++.++.++|.++...++ +++|+.+|+++++.+|+++.++.+++.++..+|
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 63 IEYYQKALELDPNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999884 999999999999999999999999999998765
No 77
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.74 E-value=1.1e-17 Score=130.79 Aligned_cols=155 Identities=12% Similarity=-0.006 Sum_probs=138.4
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|.++...+++.+|+..|..+++.+|.++..+...|..+.. .|++++|+++|+++++++|+
T Consensus 50 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--------------------~~~~~~A~~~~~~al~~~~~ 109 (275)
T 1xnf_A 50 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ--------------------AGNFDAAYEAFDSVLELDPT 109 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH--------------------ccCHHHHHHHHHHHHhcCcc
Confidence 5677888999999999999999999999999999988776 49999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED--------- 153 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~--------- 153 (197)
++.++.++|.++.. .|++++|+.+|+++++++|+++.....++.+ ...+ ++++|+.++++++...|++
T Consensus 110 ~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 186 (275)
T 1xnf_A 110 YNYAHLNRGIALYY-GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKL-DEKQAKEVLKQHFEKSDKEQWGWNIVEF 186 (275)
T ss_dssp CTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHH-CHHHHHHHHHHHHHHSCCCSTHHHHHHH
T ss_pred ccHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhc-CHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 99999999988887 9999999999999999999999887777755 4547 4899999998888877654
Q ss_pred ----------------------------HHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 154 ----------------------------SHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 154 ----------------------------~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+.+++.+|.++..+|++++|...+++.
T Consensus 187 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 187 YLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 678899999999999999998888874
No 78
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.73 E-value=1.6e-17 Score=130.58 Aligned_cols=136 Identities=13% Similarity=0.078 Sum_probs=123.0
Q ss_pred cccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcC
Q 029199 23 QERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQ 99 (197)
Q Consensus 23 ~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g 99 (197)
.+..|.++..++..|..+.. .|++++|+..|+++++.+|++ +.+++.+|.+++. .|
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~--------------------~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~-~~ 66 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYN--------------------QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ-NK 66 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH-TT
T ss_pred CCCCCCCHHHHHHHHHHHHH--------------------hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH-hC
Confidence 35678899999999998776 499999999999999999999 9999999988887 99
Q ss_pred CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCCCHHHH-----------
Q 029199 100 DLPKAEEYYSRAILADPGD---GEILSQYAKLVWE--------LHNDQDRAATYYERAVHASPEDSHVH----------- 157 (197)
Q Consensus 100 ~~~~A~~~~~~al~l~P~~---~~~~~~lg~~l~~--------~~~~~~~A~~~~~~al~~~p~~~~~~----------- 157 (197)
++++|+..|+++++++|++ +.+++.+|.+++. .|+ +++|+..|+++++.+|+++.++
T Consensus 67 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~ 145 (261)
T 3qky_A 67 EYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTD-TRKAIEAFQLFIDRYPNHELVDDATQKIRELRA 145 (261)
T ss_dssp CHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHH-HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchh-HHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHH
Confidence 9999999999999998855 6789999999998 885 9999999999999999998777
Q ss_pred ------HHHHHHHHHcCCccccccCCCcc
Q 029199 158 ------ASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 158 ------~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+.+|.++..+|++++|+..|+++
T Consensus 146 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 174 (261)
T 3qky_A 146 KLARKQYEAARLYERRELYEAAAVTYEAV 174 (261)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88999999999999999988885
No 79
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.73 E-value=3.4e-17 Score=118.94 Aligned_cols=116 Identities=18% Similarity=0.169 Sum_probs=106.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
.|++++|+..|+++++++|+++.++.++|.++.. .|++++|+.+|+++++++|+++.+++++|.++...|+ +++|+.+
T Consensus 26 ~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~ 103 (166)
T 1a17_A 26 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK-FRAALRD 103 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcc-HHHHHHH
Confidence 4999999999999999999999999999988777 9999999999999999999999999999999999885 9999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHH--HHHcCCccccccCCCcc
Q 029199 143 YERAVHASPEDSHVHASYAGF--LWETEEDNDECDAPSEL 180 (197)
Q Consensus 143 ~~~al~~~p~~~~~~~~la~~--~~~~g~~~ea~~~~~~~ 180 (197)
|+++++++|+++.++..++.+ +...|++++|...+.+.
T Consensus 104 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 104 YETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 999999999999998555555 88889999998777654
No 80
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.73 E-value=2.1e-17 Score=121.16 Aligned_cols=124 Identities=18% Similarity=0.125 Sum_probs=110.1
Q ss_pred ChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHh------------------CCCCHHHHHHH
Q 029199 29 GQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEE------------------NPGNPLFLSNY 90 (197)
Q Consensus 29 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------------------~P~~~~~~~~l 90 (197)
.+..+...|..+.. .|++++|+..|++++.+ +|.+..+|+++
T Consensus 10 ~a~~~~~~G~~~~~--------------------~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl 69 (162)
T 3rkv_A 10 SVEALRQKGNELFV--------------------QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANM 69 (162)
T ss_dssp HHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 34556667766655 49999999999999999 77888999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCC
Q 029199 91 AQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS-HVHASYAGFLWETEE 169 (197)
Q Consensus 91 a~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~ 169 (197)
|.++.. +|++++|+.+++++++++|+++.+++++|.++..+|+ +++|+.+|+++++++|+++ .+...++.+...+++
T Consensus 70 a~~~~~-~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 70 SQCYLN-IGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWK-LDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHHHH-HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-cCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhc-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 988887 9999999999999999999999999999999999885 9999999999999999999 778899999888876
Q ss_pred ccccc
Q 029199 170 DNDEC 174 (197)
Q Consensus 170 ~~ea~ 174 (197)
..+..
T Consensus 148 ~~~~~ 152 (162)
T 3rkv_A 148 KKADS 152 (162)
T ss_dssp HTTSS
T ss_pred HHHHH
Confidence 66653
No 81
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.73 E-value=3e-18 Score=145.13 Aligned_cols=174 Identities=16% Similarity=0.076 Sum_probs=136.1
Q ss_pred chhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCC------CcccCCCCCHHHHH
Q 029199 5 ALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSG------FYPAGSGGDSQGVE 70 (197)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~------~~~~~~~g~~~~A~ 70 (197)
++...+++.+|+..|..+++.+|.++..+...|..+...|.+.. ....|... +..+...|++++|+
T Consensus 279 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 358 (514)
T 2gw1_A 279 IMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCE 358 (514)
T ss_dssp HHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 34444555555555555555555555555555555444443322 01122221 12334469999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---HcCCHHHHHH
Q 029199 71 EYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGE------ILSQYAKLVWE---LHNDQDRAAT 141 (197)
Q Consensus 71 ~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~------~~~~lg~~l~~---~~~~~~~A~~ 141 (197)
..|+++++.+|+++.++..+|.++.. .|++++|+.+|+++++++|+++. ++.++|.++.. .|+ +++|+.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~A~~ 436 (514)
T 2gw1_A 359 TLFSEAKRKFPEAPEVPNFFAEILTD-KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN-FIEATN 436 (514)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH-HHHHHH
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC-HHHHHH
Confidence 99999999999999999999988887 99999999999999999999866 99999999998 885 999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 142 YYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 142 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+|++++..+|+++.++..+|.++..+|++++|...++++
T Consensus 437 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 437 LLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999888874
No 82
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.72 E-value=1.7e-17 Score=115.68 Aligned_cols=108 Identities=12% Similarity=0.201 Sum_probs=95.9
Q ss_pred CCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 029199 63 GGDSQGVEEYYKKMVEE---NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRA 139 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A 139 (197)
.|++++|+.+|++++++ +|+++.+++++|.+++. .|++++|+.+|+++++++|+++.+++++|.++..+|+ +++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT-LGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR-YEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC-HHHH
Confidence 58999999999999999 69999999999988887 9999999999999999999999999999999999995 9999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccc
Q 029199 140 ATYYERAVHASPEDSHVHASYAGFLWETEEDND 172 (197)
Q Consensus 140 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 172 (197)
+.+|+++++..|+++.+......+....+..++
T Consensus 81 ~~~~~~al~~~p~~~~~~~~~~ai~~~~~~l~~ 113 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQSYKQAILFYADKLDE 113 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHHTHHHHHHHTTCTTC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988777777666666655
No 83
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.72 E-value=9e-17 Score=111.68 Aligned_cols=116 Identities=22% Similarity=0.389 Sum_probs=109.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
.|++++|++.|+++++.+|++..++..+|.++.. .|++++|+..|+++++.+|.++.++.++|.++...| ++++|+.+
T Consensus 14 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~ 91 (136)
T 2fo7_A 14 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG-DYDEAIEY 91 (136)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT-CHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH-hcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 4899999999999999999999999999988777 999999999999999999999999999999999988 49999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
++++++..|+++.++..+|.++...|++++|...+.++
T Consensus 92 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 92 YQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 99999999999999999999999999999998887764
No 84
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.72 E-value=9e-19 Score=144.00 Aligned_cols=165 Identities=8% Similarity=-0.083 Sum_probs=135.5
Q ss_pred CcchhHHHHHHHHhhhcCc----ccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCccc-CCCCCHHHHHHHHHHHH
Q 029199 3 GTALSEEVKVMEALWNAGF----EQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPA-GSGGDSQGVEEYYKKMV 77 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~----~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~A~~~~~~al 77 (197)
|.++.....+++|+..+.. .+...|.. .|...|..... .|.+....+ ...+++++|+..|++++
T Consensus 72 g~~~~~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~---------i~~~~~l~f~~~L~~~~~A~~~~~~a~ 140 (336)
T 1p5q_A 72 GENLDLPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQ---------IPPNAELKYELHLKSFEKAKESWEMNS 140 (336)
T ss_dssp GGGGTCCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGT---------BCSSCCEEEEEEEEEEECCCCGGGCCH
T ss_pred CCccccchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccC---------CCCCCeEEEEEEEeecccccchhcCCH
Confidence 4555556789999999998 67777765 33333332211 111111111 12467788999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 78 EENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD---------------GEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 78 ~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~---------------~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
..+|+++.+++++|.+++. .|++++|+.+|+++++++|++ +.+++++|.++..+++ +++|+.+
T Consensus 141 ~~~p~~a~~~~~~g~~~~~-~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~-~~~A~~~ 218 (336)
T 1p5q_A 141 EEKLEQSTIVKERGTVYFK-EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA-FSAAIES 218 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 9999999999999988887 999999999999999999999 6999999999999885 9999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
|+++++++|+++.+++++|.++..+|++++|...|+++
T Consensus 219 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 256 (336)
T 1p5q_A 219 CNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKV 256 (336)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999885
No 85
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3e-16 Score=111.75 Aligned_cols=121 Identities=21% Similarity=0.210 Sum_probs=106.7
Q ss_pred cCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCH
Q 029199 25 RGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDL 101 (197)
Q Consensus 25 ~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~ 101 (197)
..|.++..++..|..... .|++++|+++|+++++++|++ ..++.++|.++.. .|++
T Consensus 23 ~~~~~~~~~~~~a~~~~~--------------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~-~~~~ 81 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFK--------------------CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK-LEDY 81 (148)
T ss_dssp TTCCCHHHHHHHHHHHHT--------------------TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-TTCH
T ss_pred cchHHHHHHHHHHHHHHH--------------------hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH-HccH
Confidence 345556666666665544 599999999999999999998 8999999988777 9999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 029199 102 PKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWET 167 (197)
Q Consensus 102 ~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 167 (197)
++|+.+|+++++++|+++.+++++|.++...++ +++|+.+|+++++++|+++.++..++.+....
T Consensus 82 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (148)
T 2dba_A 82 DKAETEASKAIEKDGGDVKALYRRSQALEKLGR-LDQAVLDLQRCVSLEPKNKVFQEALRNISGPS 146 (148)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCSSCHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999885 99999999999999999999999988876443
No 86
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.71 E-value=2.4e-17 Score=121.75 Aligned_cols=112 Identities=12% Similarity=0.074 Sum_probs=98.3
Q ss_pred hhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHh
Q 029199 30 QEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG-------NPL-----FLSNYAQFLYQS 97 (197)
Q Consensus 30 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-------~~~-----~~~~la~~l~~~ 97 (197)
+..++..|..+.. .|++++|+.+|+++++++|+ +.. +|.|+|.++..
T Consensus 11 a~~~~~~G~~l~~--------------------~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~- 69 (159)
T 2hr2_A 11 AYLALSDAQRQLV--------------------AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG- 69 (159)
T ss_dssp HHHHHHHHHHHHH--------------------HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH-
Confidence 4566777777666 49999999999999999999 444 99999988887
Q ss_pred cCCHHHHHHHHHHHHHh-------CCCCHHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 98 KQDLPKAEEYYSRAILA-------DPGDGEIL----SQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGF 163 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~l-------~P~~~~~~----~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 163 (197)
+|++++|+.+|+++|++ +|+++.+| +++|.++..+|+ +++|+.+|+++++++|++..+.-.+..+
T Consensus 70 Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr-~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 70 LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGR-GAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCC-HHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 99999999999999999 99999999 999999999996 9999999999999999887665444443
No 87
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.71 E-value=3.3e-16 Score=106.85 Aligned_cols=101 Identities=19% Similarity=0.211 Sum_probs=95.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
.|++++|+..|++++..+|+++.++.++|.++.. .|++++|+..++++++++|+++.+++++|.++...|+ +++|.++
T Consensus 17 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~ 94 (118)
T 1elw_A 17 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR-FEEAKRT 94 (118)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh-HHHHHHH
Confidence 4999999999999999999999999999988877 9999999999999999999999999999999999885 9999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHH
Q 029199 143 YERAVHASPEDSHVHASYAGFLW 165 (197)
Q Consensus 143 ~~~al~~~p~~~~~~~~la~~~~ 165 (197)
|+++++.+|+++.++..++.+..
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 95 YEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHhhc
Confidence 99999999999999999988754
No 88
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.71 E-value=1.4e-16 Score=136.96 Aligned_cols=118 Identities=18% Similarity=0.149 Sum_probs=107.4
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 029199 59 PAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDR 138 (197)
Q Consensus 59 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~ 138 (197)
.+...|++++|+++|+++++++|+++.+|+++|.++.. +|++++|+.+|+++++++|+++.+++++|.++..+|+ +++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~-~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK-FRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC-HHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHH
Confidence 44456999999999999999999999999999988887 9999999999999999999999999999999999885 999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCccccccCCC
Q 029199 139 AATYYERAVHASPEDSHVHASYAGF--LWETEEDNDECDAPS 178 (197)
Q Consensus 139 A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~ea~~~~~ 178 (197)
|+++|+++++++|+++.++.+++.+ +..+|++++|...++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999 888999999988887
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.71 E-value=3.5e-18 Score=137.37 Aligned_cols=156 Identities=13% Similarity=0.008 Sum_probs=131.6
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCC------ChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTV------GQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKM 76 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 76 (197)
|+++...|++.+|+..|..+++..+. .+..+...|..+.. .|++++|+.+|+++
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~--------------------~g~~~~A~~~~~~A 103 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS--------------------GGNSVNAVDSLENA 103 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHH
Confidence 55677778888888888877766431 24677777777766 49999999999999
Q ss_pred HHhCCCC------HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199 77 VEENPGN------PLFLSNYAQFLYQSK-QDLPKAEEYYSRAILADPGD------GEILSQYAKLVWELHNDQDRAATYY 143 (197)
Q Consensus 77 l~~~P~~------~~~~~~la~~l~~~~-g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~l~~~~~~~~~A~~~~ 143 (197)
+++.|.. ..++.++|.++.. . |++++|+.+|++++++.|.+ ..++.++|.++..+|+ +++|+.+|
T Consensus 104 l~l~~~~g~~~~~a~~~~~lg~~~~~-~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~ 181 (292)
T 1qqe_A 104 IQIFTHRGQFRRGANFKFELGEILEN-DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ-YIEASDIY 181 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC-HHHHHHHH
Confidence 9998764 5689999977766 6 99999999999999998865 5789999999999885 99999999
Q ss_pred HHHHHhCCCCHH-------HHHHHHHHHHHcCCccccccCCCcc
Q 029199 144 ERAVHASPEDSH-------VHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 144 ~~al~~~p~~~~-------~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
++++++.|+++. ++.++|.++..+|++++|...+++.
T Consensus 182 ~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 182 SKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999988764 6799999999999999998888874
No 90
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.70 E-value=9.7e-18 Score=143.12 Aligned_cols=154 Identities=14% Similarity=0.084 Sum_probs=111.3
Q ss_pred chhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCH
Q 029199 5 ALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNP 84 (197)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~ 84 (197)
++...+++.+|+..|..+++.+|.++..++..|..+.. .|++++|++.|+++++.+|+++
T Consensus 319 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~--------------------~g~~~~A~~~~~~~~~~~~~~~ 378 (537)
T 3fp2_A 319 MYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK--------------------QGKFTESEAFFNETKLKFPTLP 378 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCCCh
Confidence 34444455555555555555555555555554444433 4777777777777777777777
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHH----------cCCHHHHHHHHHHHHH
Q 029199 85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEI------LSQYAKLVWEL----------HNDQDRAATYYERAVH 148 (197)
Q Consensus 85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~------~~~lg~~l~~~----------~~~~~~A~~~~~~al~ 148 (197)
.++..+|.++.. .|++++|+.+|+++++++|+++.+ ++.+|.++... | ++++|+.+|+++++
T Consensus 379 ~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 379 EVPTFFAEILTD-RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE-KFNAAIKLLTKACE 456 (537)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh-HHHHHHHHHHHHHH
Confidence 777777766665 777777777777777777665544 34445666666 6 48899999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 149 ASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 149 ~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.+|+++.++.++|.++..+|++++|...|++.
T Consensus 457 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 457 LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999999999999999999998888874
No 91
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=9.9e-17 Score=112.57 Aligned_cols=98 Identities=16% Similarity=0.091 Sum_probs=92.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199 81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASY 160 (197)
Q Consensus 81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 160 (197)
|..+..|+++|..++. .|++++|+..|+++++++|+++.+++++|.++..+|+ +++|+.+|+++++++|+++.+++++
T Consensus 1 p~~a~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l 78 (126)
T 3upv_A 1 SMKAEEARLEGKEYFT-KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS-FPEAIADCNKAIEKDPNFVRAYIRK 78 (126)
T ss_dssp CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CchHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 4567889999988887 9999999999999999999999999999999999885 9999999999999999999999999
Q ss_pred HHHHHHcCCccccccCCCcc
Q 029199 161 AGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 161 a~~~~~~g~~~ea~~~~~~~ 180 (197)
|.++..+|++++|...+++.
T Consensus 79 g~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHH
Confidence 99999999999999999884
No 92
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.70 E-value=1.3e-17 Score=124.24 Aligned_cols=115 Identities=15% Similarity=0.128 Sum_probs=103.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHcCCHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVW-ELHNDQDRAAT 141 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~-~~~~~~~~A~~ 141 (197)
.|++++|+..|+++++.+|+++.+++++|.++.. .|++++|+..|+++++++| ++.++..++.+.. ..++ ..+|+.
T Consensus 19 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~-~~~a~~ 95 (176)
T 2r5s_A 19 QGEHAQALNVIQTLSDELQSRGDVKLAKADCLLE-TKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAA-ESPELK 95 (176)
T ss_dssp TTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHH-TTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHT-SCHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcc-cchHHH
Confidence 4999999999999999999999999999988877 9999999999999999999 9988777775533 3233 346899
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 142 YYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 142 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+|+++++++|+++.+++++|.++..+|++++|...++++
T Consensus 96 ~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 134 (176)
T 2r5s_A 96 RLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNI 134 (176)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 999999999999999999999999999999999888875
No 93
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.70 E-value=2e-16 Score=120.02 Aligned_cols=140 Identities=14% Similarity=0.046 Sum_probs=118.3
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|.++-..+++.+|+..|..++ +| ++..++..|..+.. .|++++|+++|+++++++|+
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~--------------------~g~~~~A~~~~~~al~~~~~ 69 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTI--------------------LKNMTEAEKAFTRSINRDKH 69 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCcc
Confidence 566778889999999998875 33 77888888888766 48999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG----------------EILSQYAKLVWELHNDQDRAATYYERA 146 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~----------------~~~~~lg~~l~~~~~~~~~A~~~~~~a 146 (197)
++.+++++|.++.. .|++++|+.+|++++++.|+++ .+++++|.++...|+ +++|+.+|+++
T Consensus 70 ~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a 147 (213)
T 1hh8_A 70 LAVAYFQRGMLYYQ-TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE-WKKAEEQLALA 147 (213)
T ss_dssp CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC-HHHHHHHHHHH
Confidence 99999999988777 9999999999999999888877 999999999999884 99999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHc
Q 029199 147 VHASPEDSHVHASYAGFLWET 167 (197)
Q Consensus 147 l~~~p~~~~~~~~la~~~~~~ 167 (197)
++++|++.......+......
T Consensus 148 l~~~p~~~~~~~~~a~~~~~~ 168 (213)
T 1hh8_A 148 TSMKSEPRHSKIDKAMECVWK 168 (213)
T ss_dssp HTTCCSGGGGHHHHHHHHHHT
T ss_pred HHcCcccccchHHHHHHHHHh
Confidence 999998766666555555443
No 94
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=4.9e-17 Score=131.37 Aligned_cols=153 Identities=12% Similarity=0.116 Sum_probs=131.4
Q ss_pred HHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCC-------HHHHHHHHHHHHH-hCCCCH
Q 029199 13 MEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGD-------SQGVEEYYKKMVE-ENPGNP 84 (197)
Q Consensus 13 ~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------~~~A~~~~~~al~-~~P~~~ 84 (197)
.+|+..|..+++.+|+++.+|+..|..+...+. .+...|+ .++|+..|+++++ ++|++.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~-------------~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~ 99 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSK-------------LLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM 99 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------HHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhch-------------hhhhccchhhcccchHHHHHHHHHHHHHhCcccH
Confidence 688899999999999999999999977642100 0000155 4999999999999 799999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGE-ILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGF 163 (197)
Q Consensus 85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~-~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 163 (197)
.+|.++|.++.. .|++++|+..|+++++++|+++. +|.++|.++...|+ +++|+..|+++++.+|.+..+|...+.+
T Consensus 100 ~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 177 (308)
T 2ond_A 100 LLYFAYADYEES-RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKAREDARTRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC-HHHHHHHHHHHHTSTTCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 999999977776 99999999999999999999997 99999999999886 9999999999999999999998877777
Q ss_pred HHH-cCCccccccCCCcc
Q 029199 164 LWE-TEEDNDECDAPSEL 180 (197)
Q Consensus 164 ~~~-~g~~~ea~~~~~~~ 180 (197)
... +|++++|...|++.
T Consensus 178 ~~~~~~~~~~A~~~~~~a 195 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELG 195 (308)
T ss_dssp HHHTSCCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 544 79999999888874
No 95
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=1.2e-17 Score=140.84 Aligned_cols=160 Identities=16% Similarity=0.180 Sum_probs=135.4
Q ss_pred CcchhHHHHHHHHhhhcCccccc--------CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQER--------GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYK 74 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~--------~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 74 (197)
|.++...|++.+|+..|.++++. .+..+.++...|+++..+|. +++++|+.+|+
T Consensus 101 a~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------------~~y~~A~~~~~ 162 (472)
T 4g1t_A 101 AWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGG------------------NQNERAKVCFE 162 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCT------------------THHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHcc------------------ccHHHHHHHHH
Confidence 45778889999999888776654 34567888889988766543 78999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHh
Q 029199 75 KMVEENPGNPLFLSNYAQFLYQ--SKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELH---NDQDRAATYYERAVHA 149 (197)
Q Consensus 75 ~al~~~P~~~~~~~~la~~l~~--~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~---~~~~~A~~~~~~al~~ 149 (197)
++++++|+++.++.+++.+++. ..++.++|++.|+++++++|+++.++.++|..+..++ +++++|.++|++++.+
T Consensus 163 kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~ 242 (472)
T 4g1t_A 163 KALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK 242 (472)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 9999999999999999966543 2578889999999999999999999999998766543 2478999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 150 SPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 150 ~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+|+++.++.++|.++...|++++|...+++.
T Consensus 243 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 273 (472)
T 4g1t_A 243 APGVTDVLRSAAKFYRRKDEPDKAIELLKKA 273 (472)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 9999999999999999999999999888874
No 96
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.69 E-value=2.5e-16 Score=111.74 Aligned_cols=96 Identities=15% Similarity=0.268 Sum_probs=79.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHcCC
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG-------EILSQYAKLVWELHND 135 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~-------~~~~~lg~~l~~~~~~ 135 (197)
.|++++|+.+|+++++++|+++.+|+++|.+++. +|++++|+.+|+++++++|+++ .++.++|.++..++ +
T Consensus 21 ~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~-~ 98 (127)
T 4gcn_A 21 QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE-EKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQN-D 98 (127)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT-C
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH-hhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcC-C
Confidence 4889999999999999999999999999977777 8999999999999998888764 47788888888877 4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199 136 QDRAATYYERAVHASPEDSHVHASYA 161 (197)
Q Consensus 136 ~~~A~~~~~~al~~~p~~~~~~~~la 161 (197)
+++|+++|+++++..|+ ++....+.
T Consensus 99 ~~~A~~~~~kal~~~~~-~~~~~~l~ 123 (127)
T 4gcn_A 99 LSLAVQWFHRSLSEFRD-PELVKKVK 123 (127)
T ss_dssp HHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence 89999999999988874 55554443
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.69 E-value=7.2e-17 Score=129.63 Aligned_cols=100 Identities=18% Similarity=0.162 Sum_probs=89.9
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH------------------
Q 029199 79 ENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAA------------------ 140 (197)
Q Consensus 79 ~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~------------------ 140 (197)
.-|++...+..+|..+.. .|++++|+..|+++++++|+++.+++++|.++...|+ +++|+
T Consensus 112 ~lp~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~-~~~A~~~l~~~~~~~p~~~~~~~ 189 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQ-ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNR-SEDAEAVLXTIPLQDQDTRYQGL 189 (287)
T ss_dssp HSCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC-HHHHHHHHTTSCGGGCSHHHHHH
T ss_pred HcCCchhhHHHHHHHHHh-CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCC-HHHHHHHHHhCchhhcchHHHHH
Confidence 349999999999988887 9999999999999999999999999999999988775 77765
Q ss_pred ----------------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 141 ----------------TYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 141 ----------------~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
..|+++++.+|+++.+++++|.++...|++++|...++++
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~ 245 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGH 245 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4456668889999999999999999999999999998885
No 98
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=1.1e-16 Score=140.43 Aligned_cols=150 Identities=10% Similarity=-0.058 Sum_probs=136.8
Q ss_pred CcchhHHHH----------HHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHH
Q 029199 3 GTALSEEVK----------VMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEY 72 (197)
Q Consensus 3 ~~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 72 (197)
|.++...++ +.+++..++.+++.+|.+..+|..+|+.+..++. -++++++++
T Consensus 70 ~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~------------------~~~~~el~~ 131 (567)
T 1dce_A 70 REVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE------------------PNWARELEL 131 (567)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS------------------CCHHHHHHH
T ss_pred HHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc------------------ccHHHHHHH
Confidence 445666666 8999999999999999999999999999988621 278999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--------------cCCHH
Q 029199 73 YKKMVEENPGNPLFLSNYAQFLYQSKQ-DLPKAEEYYSRAILADPGDGEILSQYAKLVWEL--------------HNDQD 137 (197)
Q Consensus 73 ~~~al~~~P~~~~~~~~la~~l~~~~g-~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~--------------~~~~~ 137 (197)
++++++++|.+..+|..++.++.. .| .+++++++++++++.+|.|..+|.+++.++..+ + .++
T Consensus 132 ~~k~l~~d~~N~~aW~~R~~~l~~-l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~-~~~ 209 (567)
T 1dce_A 132 CARFLEADERNFHCWDYRRFVAAQ-AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN-VLL 209 (567)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHH-TCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH-HHH
T ss_pred HHHHHhhccccccHHHHHHHHHHH-cCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHH-HHH
Confidence 999999999999999999977776 88 999999999999999999999999999998886 3 379
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccc
Q 029199 138 RAATYYERAVHASPEDSHVHASYAGFLWETEEDND 172 (197)
Q Consensus 138 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 172 (197)
++++++.+|+.++|+|..+|+.++.++...+++++
T Consensus 210 eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 210 KELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 99999999999999999999999999999999777
No 99
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1e-17 Score=141.85 Aligned_cols=155 Identities=18% Similarity=0.140 Sum_probs=144.0
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|.++...|++.+|+..|..+++.+|. +..++..|..+... |++++|+..|+++++.+|+
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~--------------------~~~~~A~~~~~~~~~~~~~ 302 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADR--------------------NDSTEYYNYFDKALKLDSN 302 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTS--------------------SCCTTGGGHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHhhcCcC
Confidence 45667788899999999999999999 99999988887763 8999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG 162 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 162 (197)
++.++..+|.++.. .|++++|+..|+++++++|+++.++.++|.++...|+ +++|+.+|+++++.+|+++.++..+|.
T Consensus 303 ~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~ 380 (514)
T 2gw1_A 303 NSSVYYHRGQMNFI-LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENK-FDDCETLFSEAKRKFPEAPEVPNFFAE 380 (514)
T ss_dssp CTHHHHHHHHHHHH-TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTC-HHHHHHHHHHHHHHSTTCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHcccCHHHHHHHHH
Confidence 99999999988887 9999999999999999999999999999999999884 999999999999999999999999999
Q ss_pred HHHHcCCccccccCCCcc
Q 029199 163 FLWETEEDNDECDAPSEL 180 (197)
Q Consensus 163 ~~~~~g~~~ea~~~~~~~ 180 (197)
++...|++++|...++++
T Consensus 381 ~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 381 ILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 999999999998888775
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.67 E-value=2.8e-16 Score=109.15 Aligned_cols=129 Identities=25% Similarity=0.336 Sum_probs=117.9
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|.++...+++.+|+..|..+++..|.++..++..|..+.. .|++++|++.|+++++.+|+
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~--------------------~~~~~~A~~~~~~~~~~~~~ 67 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK--------------------QGDYDEAIEYYQKALELDPR 67 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--------------------HTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH--------------------hcCHHHHHHHHHHHHHHCCC
Confidence 5567788899999999999999999999998888877665 38999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED 153 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~ 153 (197)
++.++..+|.++.. .|++++|+..++++++.+|.++.++..+|.++...|+ +++|..+|++++..+|++
T Consensus 68 ~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 68 SAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPRS 136 (136)
T ss_dssp CHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHSTTC
T ss_pred chHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc-HHHHHHHHHHHHccCCCC
Confidence 99999999977776 9999999999999999999999999999999999884 999999999999999864
No 101
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.67 E-value=2.2e-15 Score=105.38 Aligned_cols=106 Identities=10% Similarity=0.098 Sum_probs=95.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNP---LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD---GEILSQYAKLVWELHNDQ 136 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~l~~~~~~~ 136 (197)
.|++++|+..|+++++.+|+++ .+++.+|.+++. .|++++|+..|+++++.+|++ +.+++++|.++..+|+ +
T Consensus 15 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~-~ 92 (129)
T 2xev_A 15 NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA-TRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGK-N 92 (129)
T ss_dssp TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC-H
T ss_pred hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCC-H
Confidence 4999999999999999999998 899999988887 999999999999999999999 9999999999999884 9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 029199 137 DRAATYYERAVHASPEDSHVHASYAGFLWETEED 170 (197)
Q Consensus 137 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 170 (197)
++|+.+|+++++..|+++.+......+-...++.
T Consensus 93 ~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~~ 126 (129)
T 2xev_A 93 TEAQQTLQQVATQYPGSDAARVAQERLQSIRLGQ 126 (129)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhh
Confidence 9999999999999999999888777776655544
No 102
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.67 E-value=7.8e-17 Score=114.36 Aligned_cols=97 Identities=15% Similarity=0.189 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------
Q 029199 82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS------- 154 (197)
Q Consensus 82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~------- 154 (197)
+.+.++.++|..++. .|++++|+.+|+++++++|+++.+++++|.++..+|+ +++|+++|+++++++|+++
T Consensus 6 d~A~a~~~lG~~~~~-~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYK-QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKK-FAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhh-HHHHHHHHHHHHHhCcccchhhHHHH
Confidence 345678899999998 9999999999999999999999999999999999885 9999999999999998764
Q ss_pred HHHHHHHHHHHHcCCccccccCCCcc
Q 029199 155 HVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 155 ~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.+++++|.++..+|++++|+..|++.
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 57899999999999999999988874
No 103
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=8.5e-16 Score=104.61 Aligned_cols=97 Identities=13% Similarity=0.031 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED------SHV 156 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~------~~~ 156 (197)
++.+|+++|.+++. .|++++|+.+|+++++++|+++.+++++|.++..+|+ +++|+++|+++++++|++ ..+
T Consensus 3 ~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFK-QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGE-YTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 46789999988777 9999999999999999999999999999999999885 999999999999999999 999
Q ss_pred HHHHHHHHHHcCCccccccCCCccc
Q 029199 157 HASYAGFLWETEEDNDECDAPSELD 181 (197)
Q Consensus 157 ~~~la~~~~~~g~~~ea~~~~~~~~ 181 (197)
++.+|.++..+|+++++...++++|
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 9999999999999999999999875
No 104
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.67 E-value=5.8e-16 Score=113.49 Aligned_cols=116 Identities=9% Similarity=0.064 Sum_probs=110.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
.|++++|++.|+++++.+|+++.++..+|.++.. .|++++|+.+++++++.+|+++.++.++|.++...++ +++|+++
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~ 98 (186)
T 3as5_A 21 AGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVK-TGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQK-YDLAVPL 98 (186)
T ss_dssp HTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-HHHHHHH
Confidence 4999999999999999999999999999988887 9999999999999999999999999999999999885 9999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 143 YERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 143 ~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
++++++.+|+++.++..+|.++...|++++|...++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 136 (186)
T 3as5_A 99 LIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIA 136 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 99999999999999999999999999999998888875
No 105
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.66 E-value=8.9e-16 Score=103.89 Aligned_cols=106 Identities=14% Similarity=0.160 Sum_probs=81.7
Q ss_pred CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 029199 26 GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAE 105 (197)
Q Consensus 26 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~ 105 (197)
+|+++..++..|..+.. .|++++|+.+|+++++++|++..++.++|.++.. .|++++|+
T Consensus 2 ~p~~~~~~~~~~~~~~~--------------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~A~ 60 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYD--------------------AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN-LERYEEAV 60 (112)
T ss_dssp CCSSTTGGGGHHHHHHS--------------------SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHH--------------------hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-ccCHHHHH
Confidence 46677777777766555 3788888888888888888888888888866666 78888888
Q ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC
Q 029199 106 EYYSRAILADPG--DGEILSQYAKLVWEL-HNDQDRAATYYERAVHASPED 153 (197)
Q Consensus 106 ~~~~~al~l~P~--~~~~~~~lg~~l~~~-~~~~~~A~~~~~~al~~~p~~ 153 (197)
.+|+++++++|+ ++.++.++|.++... ++ +++|++++++++...|++
T Consensus 61 ~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 61 DCYNYVINVIEDEYNKDVWAAKADALRYIEGK-EVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSC-SHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCcccchHHHHHHHHHHHHHHhCC-HHHHHHHHHHHhhcccCC
Confidence 888888888888 888888888887776 64 778888888888877765
No 106
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.66 E-value=7.3e-16 Score=116.84 Aligned_cols=113 Identities=16% Similarity=0.110 Sum_probs=105.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
.|++++|+..|++++ +| ++.+++++|.++.. .|++++|+.+|+++++++|+++.+++++|.++...|+ +++|+++
T Consensus 19 ~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~-~~~A~~~ 93 (213)
T 1hh8_A 19 KKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTI-LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK-YDLAIKD 93 (213)
T ss_dssp TTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred hCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc-HHHHHHH
Confidence 499999999999995 44 78999999988887 9999999999999999999999999999999999885 9999999
Q ss_pred HHHHHHhCCCCH----------------HHHHHHHHHHHHcCCccccccCCCcc
Q 029199 143 YERAVHASPEDS----------------HVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 143 ~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
|++++++.|++. .+++++|.++..+|++++|...+++.
T Consensus 94 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 94 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999988877 99999999999999999998888774
No 107
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.66 E-value=5.2e-16 Score=113.93 Aligned_cols=99 Identities=16% Similarity=0.113 Sum_probs=93.6
Q ss_pred CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 029199 80 NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHAS 159 (197)
Q Consensus 80 ~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 159 (197)
++.++..|+.+|.+++. .|++++|+.+|+++++++|+++.+++++|.++..+++ +++|+.+|+++++++|+++.+|++
T Consensus 7 ~~~~a~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~ 84 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMA-RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQ-HEKAAEDAELATVVDPKYSKAWSR 84 (164)
T ss_dssp CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 46678899999988887 9999999999999999999999999999999999885 999999999999999999999999
Q ss_pred HHHHHHHcCCccccccCCCcc
Q 029199 160 YAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 160 la~~~~~~g~~~ea~~~~~~~ 180 (197)
+|.++..+|++++|...|++.
T Consensus 85 lg~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999888875
No 108
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=5.1e-17 Score=137.04 Aligned_cols=170 Identities=14% Similarity=0.015 Sum_probs=136.9
Q ss_pred HHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCC---CC--------CCCCCCCCCc----------ccCCCCCHHH
Q 029199 10 VKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGR---GG--------GTGGGGSGFY----------PAGSGGDSQG 68 (197)
Q Consensus 10 ~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~---~~--------~~~~~~~~~~----------~~~~~g~~~~ 68 (197)
+++++|+..|.++++.+|++++.+...|.....++.. .. ....|..... .....|++++
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~ 231 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE 231 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHH
Confidence 4789999999999999999999998888764333322 21 1124443221 2234588999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---------------
Q 029199 69 VEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELH--------------- 133 (197)
Q Consensus 69 A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~--------------- 133 (197)
|+++|++++.++|+++.++.++|.++.. .|++++|+..|+++++.+|+++.++.++|.++...+
T Consensus 232 a~~~~~~al~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~ 310 (472)
T 4g1t_A 232 GEKLVEEALEKAPGVTDVLRSAAKFYRR-KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKR 310 (472)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHH
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9999999999999999999999988777 999999999999999999999999999998875421
Q ss_pred ---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 134 ---NDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 134 ---~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
..+++|+.+|++++.++|.++.++.++|.++..+|++++|+..|++.
T Consensus 311 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 311 KLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 13678999999999999999999999999999999999999988875
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.66 E-value=3.8e-16 Score=136.02 Aligned_cols=137 Identities=13% Similarity=-0.031 Sum_probs=127.4
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|.++...+++.+|+..|..+++.+|+++..++..|..+.. .|++++|+++|+++++++|+
T Consensus 30 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--------------------~g~~~~A~~~~~~al~~~p~ 89 (568)
T 2vsy_A 30 ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWT--------------------QQRHAEAAVLLQQASDAAPE 89 (568)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHhcCCC
Confidence 5678889999999999999999999999999999998876 49999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWEL---HNDQDRAATYYERAVHASPEDSHVHAS 159 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~ 159 (197)
++.+++++|.++.. .|++++|++.|+++++++|+++.++.++|.++..+ + ++++|.+.|+++++.+|++...+..
T Consensus 90 ~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~ 167 (568)
T 2vsy_A 90 HPGIALWLGHALED-AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWR-ALDVLSAQVRAAVAQGVGAVEPFAF 167 (568)
T ss_dssp CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCT-THHHHHHHHHHHHHHTCCCSCHHHH
T ss_pred CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHhcCCcccChHHH
Confidence 99999999988887 99999999999999999999999999999999998 7 5999999999999999998777665
Q ss_pred HH
Q 029199 160 YA 161 (197)
Q Consensus 160 la 161 (197)
++
T Consensus 168 l~ 169 (568)
T 2vsy_A 168 LS 169 (568)
T ss_dssp TT
T ss_pred hC
Confidence 55
No 110
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.65 E-value=1e-15 Score=106.28 Aligned_cols=106 Identities=17% Similarity=0.225 Sum_probs=97.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCC
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD-------GEILSQYAKLVWELHND 135 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~-------~~~~~~lg~~l~~~~~~ 135 (197)
.|++++|+.+|+++++.+|+++.++.++|.++.. .|++++|+.+|+++++++|++ +.+++++|.++...| +
T Consensus 17 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~ 94 (131)
T 1elr_A 17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEE-K 94 (131)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTT-C
T ss_pred hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhc-c
Confidence 4999999999999999999999999999988877 999999999999999999988 999999999999988 5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcc
Q 029199 136 QDRAATYYERAVHASPEDSHVHASYAGFLWETEEDN 171 (197)
Q Consensus 136 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 171 (197)
+++|+++|++++++.| ++..+..++.+...+++.+
T Consensus 95 ~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 129 (131)
T 1elr_A 95 YKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQE 129 (131)
T ss_dssp HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999 6999999999988765443
No 111
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.65 E-value=1.3e-15 Score=107.58 Aligned_cols=101 Identities=16% Similarity=0.163 Sum_probs=94.1
Q ss_pred HhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199 78 EENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVH 157 (197)
Q Consensus 78 ~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~ 157 (197)
..+|.++..++.+|.+++. .|++++|+.+|+++++++|+++.+++++|.++...++ +++|+.+|+++++++|+++.++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~ 80 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFV-GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ-PEQALADCRRALELDGQSVKAH 80 (137)
T ss_dssp ---CCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCccccHHHHHHHHHHHHH-hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCchhHHHH
Confidence 4678899999999988887 9999999999999999999999999999999999885 9999999999999999999999
Q ss_pred HHHHHHHHHcCCccccccCCCcc
Q 029199 158 ASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 158 ~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+++|.++..+|++++|...++++
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999888875
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.65 E-value=3.8e-16 Score=127.23 Aligned_cols=154 Identities=11% Similarity=0.033 Sum_probs=131.6
Q ss_pred CcchhHHH--HHHHHhhhcCcccccCCCChhhHHhhhccc----CCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHH
Q 029199 3 GTALSEEV--KVMEALWNAGFEQERGTVGQEMYLAKGLGV----GGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKM 76 (197)
Q Consensus 3 ~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 76 (197)
|.+|...+ ++.++|..++.+++.+|.+..+|..++..+ ..++. .+++++++++++++
T Consensus 74 ~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~-----------------~~~~~~EL~~~~~~ 136 (306)
T 3dra_A 74 FNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN-----------------DFDPYREFDILEAM 136 (306)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT-----------------CCCTHHHHHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc-----------------cCCHHHHHHHHHHH
Confidence 34455555 677777777778888888888888888877 43211 26789999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHh
Q 029199 77 VEENPGNPLFLSNYAQFLYQSKQDLP--KAEEYYSRAILADPGDGEILSQYAKLVWELHND-----QDRAATYYERAVHA 149 (197)
Q Consensus 77 l~~~P~~~~~~~~la~~l~~~~g~~~--~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~-----~~~A~~~~~~al~~ 149 (197)
++.+|.+..+|.+++.++.. .+.++ +++++++++++.||.|..+|.+++.++..+++. ++++++++++++.+
T Consensus 137 l~~~pkny~aW~~R~~vl~~-l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~ 215 (306)
T 3dra_A 137 LSSDPKNHHVWSYRKWLVDT-FDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK 215 (306)
T ss_dssp HHHCTTCHHHHHHHHHHHHH-TTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHH-hcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh
Confidence 99999999999999977776 99998 999999999999999999999999998887631 89999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCccccc
Q 029199 150 SPEDSHVHASYAGFLWETEEDNDEC 174 (197)
Q Consensus 150 ~p~~~~~~~~la~~~~~~g~~~ea~ 174 (197)
+|+|..+|+.++.++.+.|+..++.
T Consensus 216 ~p~n~SaW~y~~~ll~~~~~~~~~~ 240 (306)
T 3dra_A 216 CPQNPSTWNYLLGIHERFDRSITQL 240 (306)
T ss_dssp CSSCHHHHHHHHHHHHHTTCCGGGG
T ss_pred CCCCccHHHHHHHHHHhcCCChHHH
Confidence 9999999999999999999977754
No 113
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.65 E-value=3.8e-16 Score=109.92 Aligned_cols=93 Identities=15% Similarity=0.053 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 029199 86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLW 165 (197)
Q Consensus 86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 165 (197)
.++.+|..+.. .|++++|+..|+++++++|+++.+|+++|.++...|+ +++|+.+|+++++++|+++.+++++|.++.
T Consensus 19 ~~~~~g~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLK-LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK-DGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 36778977777 9999999999999999999999999999999999885 999999999999999999999999999999
Q ss_pred HcCCccccccCCCcc
Q 029199 166 ETEEDNDECDAPSEL 180 (197)
Q Consensus 166 ~~g~~~ea~~~~~~~ 180 (197)
.+|++++|...+++.
T Consensus 97 ~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 97 NEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 999999999888874
No 114
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.65 E-value=4.5e-17 Score=127.14 Aligned_cols=156 Identities=17% Similarity=0.123 Sum_probs=134.9
Q ss_pred CcchhHHHHHHHHhhhcCccccc--------CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQER--------GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYK 74 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~--------~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 74 (197)
|.++...+++.+|+..|..+++. .|..+..+...|..+.. .|++++|+++|+
T Consensus 50 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~ 109 (283)
T 3edt_B 50 ALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK--------------------RGKYKEAEPLCK 109 (283)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT--------------------TTCHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH--------------------hccHHHHHHHHH
Confidence 56677888899999999888766 35566778888877766 499999999999
Q ss_pred HHHHh--------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHH
Q 029199 75 KMVEE--------NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA--------DPGDGEILSQYAKLVWELHNDQDR 138 (197)
Q Consensus 75 ~al~~--------~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l--------~P~~~~~~~~lg~~l~~~~~~~~~ 138 (197)
+++++ +|....++.++|.++.. .|++++|+.+|++++++ +|....++.++|.++...|+ +++
T Consensus 110 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~ 187 (283)
T 3edt_B 110 RALEIREKVLGKFHPDVAKQLNNLALLCQN-QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK-YQD 187 (283)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC-HHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-HHH
Confidence 99998 57778899999987776 99999999999999999 78888999999999999885 999
Q ss_pred HHHHHHHHHHh-------------------------------------------------CCCCHHHHHHHHHHHHHcCC
Q 029199 139 AATYYERAVHA-------------------------------------------------SPEDSHVHASYAGFLWETEE 169 (197)
Q Consensus 139 A~~~~~~al~~-------------------------------------------------~p~~~~~~~~la~~~~~~g~ 169 (197)
|+.+|++++++ .|..+.++..+|.++..+|+
T Consensus 188 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 267 (283)
T 3edt_B 188 AETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGK 267 (283)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Confidence 99999999986 25566789999999999999
Q ss_pred ccccccCCCcc
Q 029199 170 DNDECDAPSEL 180 (197)
Q Consensus 170 ~~ea~~~~~~~ 180 (197)
+++|...+++.
T Consensus 268 ~~~A~~~~~~a 278 (283)
T 3edt_B 268 LEAAHTLEDCA 278 (283)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998877763
No 115
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.65 E-value=4.4e-16 Score=126.86 Aligned_cols=147 Identities=8% Similarity=0.067 Sum_probs=133.6
Q ss_pred HHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199 13 MEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQ 92 (197)
Q Consensus 13 ~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~ 92 (197)
.+|+..++.+++.+|++..+|..+|..+..++. .+++++++++++++..+|++..+|+.++.
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~------------------~~~~eeL~~~~~~L~~nPk~y~aW~~R~~ 111 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPN------------------RNLYDELDWCEEIALDNEKNYQIWNYRQL 111 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTT------------------SCHHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccc------------------ccHHHHHHHHHHHHHHCcccHHHHHHHHH
Confidence 579999999999999999999999999988520 39999999999999999999999999997
Q ss_pred HH----HHhc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 93 FL----YQSK---QDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQD--RAATYYERAVHASPEDSHVHASYAGF 163 (197)
Q Consensus 93 ~l----~~~~---g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~la~~ 163 (197)
++ .. . +++++++.+++++++.+|+|..+|..++.++..++. ++ +++++++++++.+|.|..+|.+++.+
T Consensus 112 iL~~~~~~-l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~-~~~~~EL~~~~~~i~~d~~N~sAW~~R~~l 189 (306)
T 3dra_A 112 IIGQIMEL-NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDL-HNDAKELSFVDKVIDTDLKNNSAWSHRFFL 189 (306)
T ss_dssp HHHHHHHH-TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHh-ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc-cChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 77 54 5 789999999999999999999999999999999886 78 99999999999999999999999999
Q ss_pred HHHcCC------ccccccCCCc
Q 029199 164 LWETEE------DNDECDAPSE 179 (197)
Q Consensus 164 ~~~~g~------~~ea~~~~~~ 179 (197)
+..+|+ ++++.+.+.+
T Consensus 190 l~~l~~~~~~~~~~eEl~~~~~ 211 (306)
T 3dra_A 190 LFSKKHLATDNTIDEELNYVKD 211 (306)
T ss_dssp HHSSGGGCCHHHHHHHHHHHHH
T ss_pred HHhccccchhhhHHHHHHHHHH
Confidence 999987 6666665554
No 116
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.64 E-value=1e-16 Score=131.94 Aligned_cols=117 Identities=12% Similarity=0.075 Sum_probs=80.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 029199 62 SGGDSQGVEEYYKKMVEENPGNP-----------------LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQ 124 (197)
Q Consensus 62 ~~g~~~~A~~~~~~al~~~P~~~-----------------~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 124 (197)
..|++++|+.+|+++++++|++. .+|+++|.++.. +|++++|+.+|+++++++|+++.++++
T Consensus 191 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~ 269 (338)
T 2if4_A 191 KEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK-LKRYDEAIGHCNIVLTEEEKNPKALFR 269 (338)
T ss_dssp SSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 36999999999999999999987 489999977776 999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCccccccCCCcc
Q 029199 125 YAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWE-TEEDNDECDAPSEL 180 (197)
Q Consensus 125 lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~ea~~~~~~~ 180 (197)
+|.++..+++ +++|+.+|+++++++|+++.++.+++.+... .+..+++...|.++
T Consensus 270 lg~a~~~~g~-~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~ 325 (338)
T 2if4_A 270 RGKAKAELGQ-MDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGI 325 (338)
T ss_dssp HHHHHHTTTC-HHHHHHHHHHTTC---------------------------------
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999885 9999999999999999999999999999554 45666677777774
No 117
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.64 E-value=4.9e-16 Score=114.70 Aligned_cols=95 Identities=16% Similarity=0.070 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 029199 84 PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG-------DGE-----ILSQYAKLVWELHNDQDRAATYYERAVHA-- 149 (197)
Q Consensus 84 ~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~-------~~~-----~~~~lg~~l~~~~~~~~~A~~~~~~al~~-- 149 (197)
+..+.+.|..++. .|++++|+.+|+++++++|+ +.. +|.|+|.++..+|+ +++|+.+|+++|++
T Consensus 11 a~~~~~~G~~l~~-~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr-~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 11 AYLALSDAQRQLV-AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS-FDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhhh
Confidence 4568899988888 99999999999999999999 544 99999999999996 99999999999999
Q ss_pred -----CCCCHHHH----HHHHHHHHHcCCccccccCCCcc
Q 029199 150 -----SPEDSHVH----ASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 150 -----~p~~~~~~----~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+|+++.+| +++|.++..+|++++|+..|++.
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999 99999999999999999999984
No 118
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.64 E-value=5e-16 Score=105.17 Aligned_cols=100 Identities=16% Similarity=0.194 Sum_probs=94.4
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHH
Q 029199 79 ENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPE--DSHV 156 (197)
Q Consensus 79 ~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~--~~~~ 156 (197)
++|+++.+++.+|.+++. .|++++|+.+|+++++++|.++.+++++|.++...++ +++|+.+|+++++.+|+ ++.+
T Consensus 1 l~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~ 78 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYD-AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLER-YEEAVDCYNYVINVIEDEYNKDV 78 (112)
T ss_dssp CCCSSTTGGGGHHHHHHS-SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSCCTTCHHH
T ss_pred CCCCcHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCcccchHHH
Confidence 478999999999977776 9999999999999999999999999999999999885 99999999999999999 9999
Q ss_pred HHHHHHHHHHc-CCccccccCCCcc
Q 029199 157 HASYAGFLWET-EEDNDECDAPSEL 180 (197)
Q Consensus 157 ~~~la~~~~~~-g~~~ea~~~~~~~ 180 (197)
+.++|.++..+ |++++|...+.++
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 79 WAAKADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999 9999999888875
No 119
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.64 E-value=2.1e-17 Score=141.26 Aligned_cols=159 Identities=9% Similarity=-0.041 Sum_probs=128.5
Q ss_pred HHHHHHhhhcCc----ccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHH
Q 029199 10 VKVMEALWNAGF----EQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPL 85 (197)
Q Consensus 10 ~~~~~a~~~~~~----~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~ 85 (197)
..+..|+..+.. .+..+|.. .|...|..... ..|..........+++++|+..|++++..+|+.+.
T Consensus 200 ~~~e~al~~~~~ge~~~l~i~P~~--ay~~~g~~~~~--------ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~ 269 (457)
T 1kt0_A 200 IGIDKALEKMQREEQCILYLGPRY--GFGEAGKPKFG--------IEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAA 269 (457)
T ss_dssp HHHHHHHTTCCBTCEEEEEECGGG--TTCSSCBGGGT--------BCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHH
T ss_pred hHHHHHHHhCCCCCEEEEEECccc--ccCCCCCcccC--------CCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHH
Confidence 477888888877 55555542 22222221110 11111112222346788899999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 029199 86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD---------------GEILSQYAKLVWELHNDQDRAATYYERAVHAS 150 (197)
Q Consensus 86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~---------------~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~ 150 (197)
.++++|..++. .|++++|+.+|+++++++|++ ..+++++|.++..+++ +++|+.+|+++++++
T Consensus 270 ~~~~~G~~~~~-~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~-~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 270 IVKEKGTVYFK-GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE-YTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHh-CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcC
Confidence 99999988888 999999999999999999999 7999999999999885 999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 151 PEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 151 p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
|+++.+++++|.++..+|++++|+..|++.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~a 377 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKV 377 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999998884
No 120
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.64 E-value=9.8e-17 Score=128.89 Aligned_cols=157 Identities=12% Similarity=0.042 Sum_probs=124.4
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCC------hhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCC-CCHHHHHHHHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVG------QEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSG-GDSQGVEEYYKK 75 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~ 75 (197)
|+++.+.|++.+|+..|..+++..|.. +..+...|..+.. . |++++|+.+|++
T Consensus 84 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~--------------------~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 84 YKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN--------------------DLHDYAKAIDCYEL 143 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------TTCCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------------hhcCHHHHHHHHHH
Confidence 677888899999999999988877643 3456666666554 3 999999999999
Q ss_pred HHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHHcCCHHHHHHH
Q 029199 76 MVEENPGN------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGE-------ILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 76 al~~~P~~------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~-------~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
++++.|.+ ..++.++|.++.. +|++++|+.+|++++++.|+++. ++.++|.++..+| ++++|+.+
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~ 221 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKAL-DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT-DAVAAART 221 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 99998865 5678999988887 99999999999999999998764 6789999999988 59999999
Q ss_pred HHHHHHhCCCCHHH-----HHHHHHHHH--HcCCccccccCCCccc
Q 029199 143 YERAVHASPEDSHV-----HASYAGFLW--ETEEDNDECDAPSELD 181 (197)
Q Consensus 143 ~~~al~~~p~~~~~-----~~~la~~~~--~~g~~~ea~~~~~~~~ 181 (197)
|+++++++|+.+.. +..++..+. ..+++++|+..|+++.
T Consensus 222 ~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 222 LQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 99999999987764 445566554 4577888999888754
No 121
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.63 E-value=9.2e-16 Score=127.89 Aligned_cols=112 Identities=19% Similarity=0.171 Sum_probs=105.9
Q ss_pred CCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVE----------------ENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYA 126 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~----------------~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg 126 (197)
.|++++|+++|+++++ ++|.+..+|+++|.+++. +|++++|+.+|+++++++|+++.+++++|
T Consensus 236 ~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg 314 (370)
T 1ihg_A 236 SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK-MSDWQGAVDSCLEALEIDPSNTKALYRRA 314 (370)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 5999999999999999 888899999999988887 99999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccC
Q 029199 127 KLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDA 176 (197)
Q Consensus 127 ~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~ 176 (197)
.++..+++ +++|+.+|+++++++|+++.++..++.++..+++.+++.+.
T Consensus 315 ~~~~~~g~-~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 315 QGWQGLKE-YDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999885 99999999999999999999999999999999999887543
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.63 E-value=1.3e-15 Score=122.00 Aligned_cols=105 Identities=17% Similarity=0.140 Sum_probs=96.7
Q ss_pred CCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 029199 27 TVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEE 106 (197)
Q Consensus 27 p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~ 106 (197)
|.++..++..|..+.. .|++++|+..|+++++++|+++.+++++|.++.. .|++++|+.
T Consensus 1 p~~a~~~~~~g~~~~~--------------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~ 59 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFV--------------------GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALA 59 (281)
T ss_dssp CCCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred ChhHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHH
Confidence 5567777888877666 4999999999999999999999999999988887 999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 029199 107 YYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED 153 (197)
Q Consensus 107 ~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~ 153 (197)
.|+++++++|+++.+++++|.++..+|+ +++|+.+|+++++++|++
T Consensus 60 ~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 60 DCRRALELDGQSVKAHFFLGQCQLEMES-YDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999999885 999999999999999876
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=3.6e-16 Score=137.10 Aligned_cols=137 Identities=7% Similarity=-0.058 Sum_probs=126.7
Q ss_pred HHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCC----------HHHHHHHHHHHHHhCCC
Q 029199 13 MEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGD----------SQGVEEYYKKMVEENPG 82 (197)
Q Consensus 13 ~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~----------~~~A~~~~~~al~~~P~ 82 (197)
++|+..++.+++.+|.+..+|..+|..+..+ |+ ++++++.++++++.+|+
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l--------------------~~~~~~~~~~~~~~~eL~~~~~~l~~~pK 105 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHL--------------------ETEKSPEESAALVKAELGFLESCLRVNPK 105 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------------------HTTSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhc--------------------ccccchhhhhhhHHHHHHHHHHHHHhCCC
Confidence 4789999999999999999999999999876 44 89999999999999999
Q ss_pred CHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199 83 NPLFLSNYAQFLYQSKQ--DLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASY 160 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g--~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 160 (197)
+..+|++++.++.. .+ +++++++++++++++||+|..+|.+++.++..++..+++++++++++++.+|+|..+|+++
T Consensus 106 ~y~aW~hR~w~l~~-l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r 184 (567)
T 1dce_A 106 SYGTWHHRCWLLSR-LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYR 184 (567)
T ss_dssp CHHHHHHHHHHHHT-CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHH-cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHH
Confidence 99999999977666 89 7799999999999999999999999999999988458999999999999999999999999
Q ss_pred HHHHHHcCCc
Q 029199 161 AGFLWETEED 170 (197)
Q Consensus 161 a~~~~~~g~~ 170 (197)
+.++..+++.
T Consensus 185 ~~ll~~l~~~ 194 (567)
T 1dce_A 185 SCLLPQLHPQ 194 (567)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHhhccc
Confidence 9999997443
No 124
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.61 E-value=1.6e-15 Score=117.07 Aligned_cols=131 Identities=15% Similarity=0.114 Sum_probs=113.9
Q ss_pred ChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCHHHHH
Q 029199 29 GQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNP---LFLSNYAQFLYQSKQDLPKAE 105 (197)
Q Consensus 29 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~l~~~~g~~~~A~ 105 (197)
+++.++..|..+.. .|++++|+..|+++++..|+++ .+++.+|.+++. .|++++|+
T Consensus 3 ~~~~~~~~a~~~~~--------------------~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~-~~~~~~A~ 61 (225)
T 2yhc_A 3 PPNEIYATAQQKLQ--------------------DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQ 61 (225)
T ss_dssp CHHHHHHHHHHHHH--------------------HTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred CHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHH
Confidence 45666777766655 4999999999999999999874 789999988888 99999999
Q ss_pred HHHHHHHHhCCCCHH---HHHHHHHHHHHHc-----------------CCHHHHHHHHHHHHHhCCCCHHHH--------
Q 029199 106 EYYSRAILADPGDGE---ILSQYAKLVWELH-----------------NDQDRAATYYERAVHASPEDSHVH-------- 157 (197)
Q Consensus 106 ~~~~~al~l~P~~~~---~~~~lg~~l~~~~-----------------~~~~~A~~~~~~al~~~p~~~~~~-------- 157 (197)
..|+++++++|+++. +++.+|.++...+ +++++|+..|+++++..|+++.++
T Consensus 62 ~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~ 141 (225)
T 2yhc_A 62 AAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF 141 (225)
T ss_dssp HHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH
Confidence 999999999999975 7899999988631 258999999999999999998665
Q ss_pred ---------HHHHHHHHHcCCccccccCCCcc
Q 029199 158 ---------ASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 158 ---------~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+.+|.++.+.|++++|+..|+++
T Consensus 142 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 173 (225)
T 2yhc_A 142 LKDRLAKYEYSVAEYYTERGAWVAVVNRVEGM 173 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 67899999999999999888885
No 125
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.60 E-value=5.4e-16 Score=120.96 Aligned_cols=149 Identities=16% Similarity=0.143 Sum_probs=125.8
Q ss_pred HHHHHHhhhcCcccccC-CCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHh--------C
Q 029199 10 VKVMEALWNAGFEQERG-TVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEE--------N 80 (197)
Q Consensus 10 ~~~~~a~~~~~~~~~~~-p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~ 80 (197)
.-+.+|+..+......+ |..+.++...|..+.. .|++++|+.+|++++++ +
T Consensus 22 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (283)
T 3edt_B 22 PLCKQALEDLEKTSGHDHPDVATMLNILALVYRD--------------------QNKYKEAAHLLNDALAIREKTLGKDH 81 (283)
T ss_dssp HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH--------------------cccHHHHHHHHHHHHHHHHHHcCCcc
Confidence 34455555554443333 5667888888888766 49999999999999988 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 029199 81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA--------DPGDGEILSQYAKLVWELHNDQDRAATYYERAVHA--- 149 (197)
Q Consensus 81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l--------~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~--- 149 (197)
|....++.++|.++.. .|++++|+.+|++++++ +|....++.++|.++...|+ +++|+.+|++++++
T Consensus 82 ~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 82 PAVAATLNNLAVLYGK-RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK-AEEVEYYYRRALEIYAT 159 (283)
T ss_dssp HHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 6678899999977776 99999999999999998 57788999999999999885 99999999999999
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 150 -----SPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 150 -----~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.|....++.++|.++..+|++++|...+++.
T Consensus 160 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7778889999999999999999998888774
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.60 E-value=4.4e-15 Score=107.65 Aligned_cols=125 Identities=11% Similarity=-0.046 Sum_probs=112.1
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|.++-..+++.+|+..|..+++.+|.++.+++..|..+.. .|++++|+.+|+++++++|+
T Consensus 20 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~--------------------~~~~~~A~~~~~~a~~~~~~ 79 (166)
T 1a17_A 20 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR--------------------TECYGYALGDATRAIELDKK 79 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCcc
Confidence 5667788999999999999999999999999999988776 49999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHh
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKL--VWELHNDQDRAATYYERAVHA 149 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~--l~~~~~~~~~A~~~~~~al~~ 149 (197)
++.+++++|.++.. .|++++|+.+|+++++++|+++.++..++.+ +...++ +++|+.++.++..+
T Consensus 80 ~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 80 YIKGYYRRAASNMA-LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA-FERAIAGDEHKRSV 146 (166)
T ss_dssp CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHHHcccchHHH
Confidence 99999999988777 9999999999999999999999999665554 777774 99999999987654
No 127
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.60 E-value=2.1e-16 Score=125.29 Aligned_cols=156 Identities=15% Similarity=0.117 Sum_probs=134.1
Q ss_pred CcchhHHHHHHHHhhhcCccccc--------CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQER--------GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYK 74 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~--------~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 74 (197)
|.++...+++.+|+..|..+++. .|..+..+...|..+.. .|++++|+.+|+
T Consensus 76 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~ 135 (311)
T 3nf1_A 76 ALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK--------------------RGKYKEAEPLCK 135 (311)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT--------------------TTCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH--------------------cCcHHHHHHHHH
Confidence 55677788889999988887765 35556777777777666 499999999999
Q ss_pred HHHHhC--------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHH
Q 029199 75 KMVEEN--------PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA--------DPGDGEILSQYAKLVWELHNDQDR 138 (197)
Q Consensus 75 ~al~~~--------P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l--------~P~~~~~~~~lg~~l~~~~~~~~~ 138 (197)
+++++. |....++.++|.++.. .|++++|+.+|++++++ +|..+.++.++|.++...|+ +++
T Consensus 136 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~ 213 (311)
T 3nf1_A 136 RALEIREKVLGKDHPDVAKQLNNLALLCQN-QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK-FKQ 213 (311)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC-HHH
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC-HHH
Confidence 999984 6667889999977776 99999999999999999 78888999999999999885 999
Q ss_pred HHHHHHHHHHh-------------------------------------------------CCCCHHHHHHHHHHHHHcCC
Q 029199 139 AATYYERAVHA-------------------------------------------------SPEDSHVHASYAGFLWETEE 169 (197)
Q Consensus 139 A~~~~~~al~~-------------------------------------------------~p~~~~~~~~la~~~~~~g~ 169 (197)
|+.+|++++++ +|..+.++.++|.++..+|+
T Consensus 214 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 293 (311)
T 3nf1_A 214 AETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGK 293 (311)
T ss_dssp HHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCC
Confidence 99999999984 46777889999999999999
Q ss_pred ccccccCCCcc
Q 029199 170 DNDECDAPSEL 180 (197)
Q Consensus 170 ~~ea~~~~~~~ 180 (197)
+++|...+++.
T Consensus 294 ~~~A~~~~~~a 304 (311)
T 3nf1_A 294 FEAAETLEEAA 304 (311)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888763
No 128
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.59 E-value=2.7e-16 Score=130.04 Aligned_cols=157 Identities=10% Similarity=0.029 Sum_probs=133.4
Q ss_pred CCcchhHHHHHHHHhhhcCccccc------CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHH
Q 029199 2 AGTALSEEVKVMEALWNAGFEQER------GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKK 75 (197)
Q Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~------~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 75 (197)
+|+.+...|++.+|+..|..+++. .+..+.++...|..... .|++++|+.+|++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~--------------------~~~~~~A~~~~~~ 168 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYY--------------------MKQTYFSMDYARQ 168 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH--------------------cCCHHHHHHHHHH
Confidence 467778888999999999888775 22345778888877766 4999999999999
Q ss_pred HHHhCCCC-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHH
Q 029199 76 MVEENPGN-------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG------EILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 76 al~~~P~~-------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~------~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
++++.+.. ..++.++|.++.. .|++++|+.+|++++++.|... .++.++|.++...|+ +++|+.+
T Consensus 169 al~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~-~~~A~~~ 246 (383)
T 3ulq_A 169 AYEIYKEHEAYNIRLLQCHSLFATNFLD-LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ-YEDAIPY 246 (383)
T ss_dssp HHHHHHTCSTTHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC-HHHHHHH
Confidence 99985443 4589999988777 9999999999999999865443 589999999999884 9999999
Q ss_pred HHHHHH-----hC-CCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 143 YERAVH-----AS-PEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 143 ~~~al~-----~~-p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
|+++++ .+ |..+.++.++|.++..+|++++|...+++.
T Consensus 247 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 247 FKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999 56 888999999999999999999998888774
No 129
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.59 E-value=1.7e-16 Score=125.84 Aligned_cols=156 Identities=15% Similarity=0.108 Sum_probs=136.6
Q ss_pred CcchhHHHHHHHHhhhcCcccc--------cCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQE--------RGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYK 74 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~--------~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 74 (197)
|.++...|++.+|+..|..+++ ..|..+.++...|..+.. .|++++|+.+|+
T Consensus 34 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--------------------~g~~~~A~~~~~ 93 (311)
T 3nf1_A 34 VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD--------------------QNKYKDAANLLN 93 (311)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH--------------------CCCHHHHHHHHH
Confidence 5567788899999999998887 466777888888887766 499999999999
Q ss_pred HHHHh--------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHcCCHHH
Q 029199 75 KMVEE--------NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD--------PGDGEILSQYAKLVWELHNDQDR 138 (197)
Q Consensus 75 ~al~~--------~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~--------P~~~~~~~~lg~~l~~~~~~~~~ 138 (197)
+++++ +|....++.++|.++.. .|++++|+.+|++++++. |....++.++|.++...|+ +++
T Consensus 94 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~ 171 (311)
T 3nf1_A 94 DALAIREKTLGKDHPAVAATLNNLAVLYGK-RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK-YEE 171 (311)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC-HHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC-HHH
Confidence 99988 46678899999977776 999999999999999884 6677889999999999885 999
Q ss_pred HHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 139 AATYYERAVHA--------SPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 139 A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
|+++|++++++ +|....++..+|.++..+|++++|...+++.
T Consensus 172 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 172 VEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp HHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998 7778889999999999999999998888875
No 130
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.59 E-value=3.8e-16 Score=118.09 Aligned_cols=124 Identities=7% Similarity=-0.096 Sum_probs=104.5
Q ss_pred CCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---------------
Q 029199 55 SGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG--------------- 119 (197)
Q Consensus 55 ~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~--------------- 119 (197)
..+......|+++++.+.++......+.....+..+|..++. .|++++|+..|++++++.|.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFK-KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 333444446888999888888888888889999999988887 9999999999999999999998
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 120 -EILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 120 -~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.++.++|.++..+++ +++|+.+|+++++++|+++.+++++|.++..+|++++|...|++.
T Consensus 88 ~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKD-YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 899999999999885 999999999999999999999999999999999999999988884
No 131
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=6.3e-15 Score=116.14 Aligned_cols=150 Identities=15% Similarity=0.125 Sum_probs=88.5
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCC-CCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGG-RGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENP 81 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P 81 (197)
|.++...+++.+|+..|..+.+ |+++..++..|..+.. .| ..+++++|+++|+++++.+
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~-----------------~~~~~~~A~~~~~~a~~~~- 72 (273)
T 1ouv_A 13 GAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQG-----------------VEKNLKKAASFYAKACDLN- 72 (273)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSS-----------------SCCCHHHHHHHHHHHHHTT-
T ss_pred HHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCC-----------------cCCCHHHHHHHHHHHHHCC-
Confidence 4556667778888888877665 6777777777766543 00 0255666666666666553
Q ss_pred CCHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCC
Q 029199 82 GNPLFLSNYAQFLYQS----KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWE----LHNDQDRAATYYERAVHASPED 153 (197)
Q Consensus 82 ~~~~~~~~la~~l~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~----~~~~~~~A~~~~~~al~~~p~~ 153 (197)
++.+++++|.+ +.. .+++++|+.+|+++++.+ ++.+++++|.++.. .+ ++++|+.+|+++++.+ +
T Consensus 73 -~~~a~~~lg~~-~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~-~~~~A~~~~~~a~~~~--~ 145 (273)
T 1ouv_A 73 -YSNGCHLLGNL-YYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTR-DFKKAVEYFTKACDLN--D 145 (273)
T ss_dssp -CHHHHHHHHHH-HHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCC-CHHHHHHHHHHHHHTT--C
T ss_pred -CHHHHHHHHHH-HhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCccc-CHHHHHHHHHHHHhcC--c
Confidence 55566666633 323 456666666666665542 55666666655555 44 3566666666665543 4
Q ss_pred HHHHHHHHHHHHH----cCCccccccCCCc
Q 029199 154 SHVHASYAGFLWE----TEEDNDECDAPSE 179 (197)
Q Consensus 154 ~~~~~~la~~~~~----~g~~~ea~~~~~~ 179 (197)
+.+++++|.++.. .+++++|...+++
T Consensus 146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~ 175 (273)
T 1ouv_A 146 GDGCTILGSLYDAGRGTPKDLKKALASYDK 175 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 5555666666655 5555555555554
No 132
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.59 E-value=1.3e-15 Score=112.27 Aligned_cols=108 Identities=8% Similarity=0.003 Sum_probs=88.7
Q ss_pred cchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCC
Q 029199 4 TALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGN 83 (197)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~ 83 (197)
.-..+.+++++|+..+..+++.+|++++.|+..|..+...+.+..+ ....+.+++|+.+|+++++++|++
T Consensus 10 ~~~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g----------~~al~~~~eAi~~le~AL~ldP~~ 79 (158)
T 1zu2_A 10 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSI----------SDAKQMIQEAITKFEEALLIDPKK 79 (158)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCH----------HHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchh----------hhhHhHHHHHHHHHHHHHHhCcCc
Confidence 3467889999999999999999999999999999988765321100 000023679999999999999999
Q ss_pred HHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHhCCCCHHHH
Q 029199 84 PLFLSNYAQFLYQSK-----------QDLPKAEEYYSRAILADPGDGEIL 122 (197)
Q Consensus 84 ~~~~~~la~~l~~~~-----------g~~~~A~~~~~~al~l~P~~~~~~ 122 (197)
..+|+++|.++.. + |++++|+.+|++|++++|++..++
T Consensus 80 ~~A~~~LG~ay~~-lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~ 128 (158)
T 1zu2_A 80 DEAVWCIGNAYTS-FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL 128 (158)
T ss_dssp HHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHH-hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999988887 5 489999999999999999986443
No 133
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.59 E-value=2e-14 Score=99.22 Aligned_cols=102 Identities=16% Similarity=0.160 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 029199 68 GVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAV 147 (197)
Q Consensus 68 ~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al 147 (197)
.|+..|+++++.+|+++.+|+++|.++.. .|++++|+.+|+++++++|+++.+++++|.++...|+ +++|+.+|++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAE-HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD-RAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence 58899999999999999999999988877 9999999999999999999999999999999999885 999999999999
Q ss_pred HhCCC--CHHHHHHHHHHHHHcCCcc
Q 029199 148 HASPE--DSHVHASYAGFLWETEEDN 171 (197)
Q Consensus 148 ~~~p~--~~~~~~~la~~~~~~g~~~ 171 (197)
+++|+ +......+...+..+++..
T Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~~~ 106 (115)
T 2kat_A 81 AAAQSRGDQQVVKELQVFLRRLARED 106 (115)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HhccccccHHHHHHHHHHHHHhcccc
Confidence 99874 5667777777777665443
No 134
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.59 E-value=6.5e-15 Score=120.97 Aligned_cols=136 Identities=10% Similarity=-0.078 Sum_probs=122.5
Q ss_pred HHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199 12 VMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYA 91 (197)
Q Consensus 12 ~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la 91 (197)
+.+++..++.++..+|.++.+|..+++.+..++. ..+++++.++.++++++|.|..+|...+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~------------------~~~~~EL~~~~k~l~~dprNy~AW~~R~ 151 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE------------------PNWARELELCARFLEADERNFHCWDYRR 151 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSS------------------CCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCc------------------ccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 6889999999999999999999999999988631 2689999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--------------cCCHHHHHHHHHHHHHhCCCCHHH
Q 029199 92 QFLYQSKQD-LPKAEEYYSRAILADPGDGEILSQYAKLVWEL--------------HNDQDRAATYYERAVHASPEDSHV 156 (197)
Q Consensus 92 ~~l~~~~g~-~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~--------------~~~~~~A~~~~~~al~~~p~~~~~ 156 (197)
.++.. .|. +++++++++++++.+|.|..+|.+++.++..+ +. ++++++++.+++.++|+|..+
T Consensus 152 ~vl~~-l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~-~~eEle~~~~ai~~~P~d~Sa 229 (331)
T 3dss_A 152 FVAAQ-AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV-LLKELELVQNAFFTDPNDQSA 229 (331)
T ss_dssp HHHHH-TTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHH-HHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHH-hCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHH-HHHHHHHHHHHHHhCCCCHHH
Confidence 77766 888 69999999999999999999999999999887 33 889999999999999999999
Q ss_pred HHHHHHHHHHc
Q 029199 157 HASYAGFLWET 167 (197)
Q Consensus 157 ~~~la~~~~~~ 167 (197)
|+.+..++...
T Consensus 230 W~Y~r~ll~~~ 240 (331)
T 3dss_A 230 WFYHRWLLGAG 240 (331)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHHhc
Confidence 98666666555
No 135
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.58 E-value=5e-15 Score=121.67 Aligned_cols=145 Identities=7% Similarity=-0.068 Sum_probs=124.5
Q ss_pred HHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199 13 MEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQ 92 (197)
Q Consensus 13 ~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~ 92 (197)
.+|+..++.+++.+|.+..+|..++..+..++... +|. .....+++++.++++++..+|++..+|+.++.
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~----~~~------~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~w 116 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEK----SPE------ESAALVKAELGFLESCLRVNPKSYGTWHHRCW 116 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHS----CHH------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccc----cch------hhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 46899999999999999999999999987652100 000 00012789999999999999999999999997
Q ss_pred HHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 029199 93 FLYQSKQ--DLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETE 168 (197)
Q Consensus 93 ~l~~~~g--~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 168 (197)
++.. .+ .+++++.+++++++++|.|..+|...+.++...+..++++++++.+++..+|+|..+|.+++.++..++
T Consensus 117 lL~~-l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 117 LLSR-LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HHHH-CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHS
T ss_pred HHhc-cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhh
Confidence 7776 78 489999999999999999999999999999998864689999999999999999999999999999883
No 136
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=2.5e-15 Score=129.75 Aligned_cols=146 Identities=14% Similarity=0.107 Sum_probs=130.7
Q ss_pred HHhhhcCcccc-cCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCH-HHHHHHH
Q 029199 14 EALWNAGFEQE-RGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNP-LFLSNYA 91 (197)
Q Consensus 14 ~a~~~~~~~~~-~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~-~~~~~la 91 (197)
+|+..|..+++ ..|+++.+|+..+..... .|++++|.+.|+++++++|+++ .+|.+++
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~--------------------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 363 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEES--------------------RMKYEKVHSIYNRLLAIEDIDPTLVYIQYM 363 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHSSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHh--------------------cCCHHHHHHHHHHHhCccccCchHHHHHHH
Confidence 89999999997 799999999999988766 3899999999999999999996 6999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcc
Q 029199 92 QFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDN 171 (197)
Q Consensus 92 ~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 171 (197)
.++.. .|++++|+..|+++++..|.+..++...+.+.+...+++++|..+|+++++.+|+++.+|.+++.++..+|+.+
T Consensus 364 ~~~~~-~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~ 442 (530)
T 2ooe_A 364 KFARR-AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN 442 (530)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHH
T ss_pred HHHHH-hcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHh
Confidence 87776 89999999999999999999888888777664433446999999999999999999999999999999999999
Q ss_pred ccccCCCcc
Q 029199 172 DECDAPSEL 180 (197)
Q Consensus 172 ea~~~~~~~ 180 (197)
+|...|++.
T Consensus 443 ~Ar~~~~~a 451 (530)
T 2ooe_A 443 NTRVLFERV 451 (530)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 999888885
No 137
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.58 E-value=1.5e-15 Score=125.48 Aligned_cols=137 Identities=9% Similarity=-0.024 Sum_probs=128.1
Q ss_pred HHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCC-CHHHHHHHHHHHHHhCCCCHHHHHH
Q 029199 11 KVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGG-DSQGVEEYYKKMVEENPGNPLFLSN 89 (197)
Q Consensus 11 ~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~P~~~~~~~~ 89 (197)
+..+|+..++.+++.+|.+..+|..+|..+..+ | .++++++.+++++..+|++..+|+.
T Consensus 69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l--------------------~~~l~eEL~~~~~~L~~nPKny~aW~h 128 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTSL--------------------NKSLEDELRLMNEFAVQNLKSYQVWHH 128 (349)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCCHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHh--------------------hhhHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 446899999999999999999999999999875 5 6999999999999999999999999
Q ss_pred HHHHHHHhc-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHH
Q 029199 90 YAQFLYQSK-Q-DLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQD--------RAATYYERAVHASPEDSHVHAS 159 (197)
Q Consensus 90 la~~l~~~~-g-~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~ 159 (197)
++.++.. . + ++++++.+++++++++|+|..+|..++.++..+++ ++ +++++++++++.+|.|..+|.+
T Consensus 129 R~wlL~~-l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~-~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~ 206 (349)
T 3q7a_A 129 RLLLLDR-ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFST-LGRISEAQWGSELDWCNEMLRVDGRNNSAWGW 206 (349)
T ss_dssp HHHHHHH-HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHH-hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc-ccccchhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9977777 6 7 89999999999999999999999999999999886 66 9999999999999999999999
Q ss_pred HHHHHHHcCC
Q 029199 160 YAGFLWETEE 169 (197)
Q Consensus 160 la~~~~~~g~ 169 (197)
++.++..+++
T Consensus 207 R~~lL~~l~~ 216 (349)
T 3q7a_A 207 RWYLRVSRPG 216 (349)
T ss_dssp HHHHHTTSTT
T ss_pred HHHHHHhccc
Confidence 9999999987
No 138
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.57 E-value=9.3e-15 Score=106.93 Aligned_cols=96 Identities=10% Similarity=0.061 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA------------------DPGDGEILSQYAKLVWELHNDQDRAATYYE 144 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l------------------~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~ 144 (197)
.+..+...|..++. .|++++|+..|++++.+ +|.++.+++++|.++..+|+ +++|+.+++
T Consensus 10 ~a~~~~~~G~~~~~-~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-~~~A~~~~~ 87 (162)
T 3rkv_A 10 SVEALRQKGNELFV-QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD-LHEAEETSS 87 (162)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 35678899988888 99999999999999999 78888999999999999995 999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 145 RAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 145 ~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
++++++|+++.+++++|.++..+|++++|...|++.
T Consensus 88 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 88 EVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 999999999999999999999999999999999884
No 139
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.56 E-value=6.4e-14 Score=91.88 Aligned_cols=85 Identities=20% Similarity=0.358 Sum_probs=79.5
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199 82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYA 161 (197)
Q Consensus 82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 161 (197)
.++.+++.+|.++.. .|++++|+.+|+++++++|+++.+++++|.++...++ +++|+.+|+++++++|+++.++.++|
T Consensus 7 ~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 7 NSAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 467889999988877 9999999999999999999999999999999999885 99999999999999999999999999
Q ss_pred HHHHHcC
Q 029199 162 GFLWETE 168 (197)
Q Consensus 162 ~~~~~~g 168 (197)
.++..+|
T Consensus 85 ~~~~~~g 91 (91)
T 1na3_A 85 NAKQKQG 91 (91)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9998765
No 140
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.56 E-value=1.4e-14 Score=116.03 Aligned_cols=152 Identities=14% Similarity=0.025 Sum_probs=120.0
Q ss_pred hhHHHHHHHHhhhcCcccccCCCChh------hHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHh
Q 029199 6 LSEEVKVMEALWNAGFEQERGTVGQE------MYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEE 79 (197)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 79 (197)
+-..+++.+|+..+...++..+..+. .++..|..... .|++++|+.+|++++++
T Consensus 85 ~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~A~~~~~~al~~ 144 (293)
T 2qfc_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK--------------------KVDYEYCILELKKLLNQ 144 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHT--------------------SSCHHHHHHHHHHHHTT
T ss_pred HHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhc--------------------CCCHHHHHHHHHHHHHH
Confidence 34556778888888777666665442 23333333332 48999999999999987
Q ss_pred CCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029199 80 NPGN------PLFLSNYAQFLYQSKQDLPKAEEYYSRAI---LADPGDG----EILSQYAKLVWELHNDQDRAATYYERA 146 (197)
Q Consensus 80 ~P~~------~~~~~~la~~l~~~~g~~~~A~~~~~~al---~l~P~~~----~~~~~lg~~l~~~~~~~~~A~~~~~~a 146 (197)
.+.. ..+++++|.++.. .|++++|+.+|++++ +..|+++ .+++++|.++..+|+ +++|+.+|+++
T Consensus 145 ~~~~~~~~~~~~~~~~lg~~y~~-~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-y~~Al~~~~ka 222 (293)
T 2qfc_A 145 QLTGIDVYQNLYIENAIANIYAE-NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-YEESLYQVNKA 222 (293)
T ss_dssp CCCSSCTTHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh-HHHHHHHHHHH
Confidence 6554 6689999988777 999999999999999 5567754 689999999999885 99999999999
Q ss_pred HHhCCC------CHHHHHHHHHHHHHcCCcccc-ccCCCc
Q 029199 147 VHASPE------DSHVHASYAGFLWETEEDNDE-CDAPSE 179 (197)
Q Consensus 147 l~~~p~------~~~~~~~la~~~~~~g~~~ea-~~~~~~ 179 (197)
+++.++ -..+++++|.++..+|++++| ...+++
T Consensus 223 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 988643 278899999999999999999 555655
No 141
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.55 E-value=4.7e-14 Score=95.97 Aligned_cols=96 Identities=16% Similarity=0.015 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAG 162 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 162 (197)
.+..++.+|..+.. .|++++|+..|++++..+|+++.++.++|.++...++ +++|+.+++++++.+|+++.+++++|.
T Consensus 3 ~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALS-VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD-YQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 45678899988887 9999999999999999999999999999999999885 999999999999999999999999999
Q ss_pred HHHHcCCccccccCCCcc
Q 029199 163 FLWETEEDNDECDAPSEL 180 (197)
Q Consensus 163 ~~~~~g~~~ea~~~~~~~ 180 (197)
++..+|++++|...+++.
T Consensus 81 ~~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 999999999999888874
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.55 E-value=1.3e-14 Score=101.19 Aligned_cols=110 Identities=15% Similarity=0.055 Sum_probs=102.3
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|.++-..+++.+|+..|..+++.+|.++.+++..|..+.. .|++++|+++|+++++++|+
T Consensus 23 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--------------------~~~~~~A~~~~~~a~~~~~~ 82 (133)
T 2lni_A 23 GNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK--------------------LLEFQLALKDCEECIQLEPT 82 (133)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT--------------------TTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH--------------------hccHHHHHHHHHHHHHhCCC
Confidence 5667788899999999999999999999999999988776 49999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELH 133 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~ 133 (197)
++.+++++|.++.. .|++++|+.+|+++++++|.++.++..++.++...+
T Consensus 83 ~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 83 FIKGYTRKAAALEA-MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 99999999988877 999999999999999999999999999999988765
No 143
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.54 E-value=1.8e-15 Score=130.05 Aligned_cols=131 Identities=12% Similarity=-0.028 Sum_probs=116.9
Q ss_pred CCcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCC
Q 029199 2 AGTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENP 81 (197)
Q Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P 81 (197)
.|.++-+.+++.+|+..|.++++.+|.++..+...|..+.. .|++++|+++|+++++++|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~--------------------~g~~~~A~~~~~~al~l~p 71 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR--------------------TECYGYALGDATRAIELDK 71 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--------------------hcCHHHHHHHHHHHHHhCC
Confidence 58889999999999999999999999999999999999877 4999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHHcCCHHHHHHHHH-----------HHHH
Q 029199 82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKL--VWELHNDQDRAATYYE-----------RAVH 148 (197)
Q Consensus 82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~--l~~~~~~~~~A~~~~~-----------~al~ 148 (197)
+++.+++++|.++.. +|++++|+.+|+++++++|+++.++.+++.+ +...++ +++|++.++ ++++
T Consensus 72 ~~~~~~~~lg~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~al~ 149 (477)
T 1wao_1 72 KYIKGYYRRAASNMA-LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA-FERAIAGDEHKRSVVDSLDIESMT 149 (477)
T ss_dssp TCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHH-HCCC------CCSTTTCCTTSSCC
T ss_pred CCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhccccccchhHhhhhhhhcc
Confidence 999999999988887 9999999999999999999999999999988 788785 999999999 8888
Q ss_pred hCCCCH
Q 029199 149 ASPEDS 154 (197)
Q Consensus 149 ~~p~~~ 154 (197)
++|+..
T Consensus 150 ~~~~~~ 155 (477)
T 1wao_1 150 IEDEYS 155 (477)
T ss_dssp CCTTCC
T ss_pred cccccc
Confidence 887643
No 144
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=2.7e-14 Score=112.51 Aligned_cols=144 Identities=17% Similarity=0.120 Sum_probs=79.6
Q ss_pred HHHHHHHhhhcCcccccCCCChhhHHhhhcccCC-CCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199 9 EVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGG-RGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFL 87 (197)
Q Consensus 9 ~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 87 (197)
.+++.+|+..|..+.+.+ ++..++..|..+.. .| ..+++++|+++|+++++.+ ++.++
T Consensus 55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~-----------------~~~~~~~A~~~~~~a~~~~--~~~a~ 113 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQG-----------------VSQNTNKALQYYSKACDLK--YAEGC 113 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS-----------------SCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCC-----------------cccCHHHHHHHHHHHHHcC--CccHH
Confidence 566677777776666553 66666666655432 00 0255666666666665552 55555
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 029199 88 SNYAQFLYQS----KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWE----LHNDQDRAATYYERAVHASPEDSHVHAS 159 (197)
Q Consensus 88 ~~la~~l~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~ 159 (197)
+++|.++. . .+++++|+.+|+++++.+ ++.+++++|.++.. .+ ++++|+.+|+++++. +++.++++
T Consensus 114 ~~lg~~~~-~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~-~~~~A~~~~~~a~~~--~~~~a~~~ 187 (273)
T 1ouv_A 114 ASLGGIYH-DGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPK-DLKKALASYDKACDL--KDSPGCFN 187 (273)
T ss_dssp HHHHHHHH-HCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHH-cCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHC--CCHHHHHH
Confidence 55663332 3 455666666666665544 45555555555554 34 355666666655554 23555555
Q ss_pred HHHHHHH----cCCccccccCCCc
Q 029199 160 YAGFLWE----TEEDNDECDAPSE 179 (197)
Q Consensus 160 la~~~~~----~g~~~ea~~~~~~ 179 (197)
+|.++.. .+++++|...+++
T Consensus 188 lg~~~~~g~~~~~~~~~A~~~~~~ 211 (273)
T 1ouv_A 188 AGNMYHHGEGATKNFKEALARYSK 211 (273)
T ss_dssp HHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCccHHHHHHHHHH
Confidence 6665555 5555555555544
No 145
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.54 E-value=1.5e-14 Score=111.09 Aligned_cols=155 Identities=9% Similarity=-0.030 Sum_probs=128.5
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|.++...+++.+|+..|.++. +.+++..++..|..+.. ++. ..++++|+++|++++ ++.
T Consensus 25 g~~~~~~~~~~~A~~~~~~a~--~~g~~~a~~~lg~~y~~-~g~----------------~~~~~~A~~~~~~A~--~~g 83 (212)
T 3rjv_A 25 ADTWVSSGDYQKAEYWAQKAA--AQGDGDALALLAQLKIR-NPQ----------------QADYPQARQLAEKAV--EAG 83 (212)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH--HTTCHHHHHHHHHHTTS-STT----------------SCCHHHHHHHHHHHH--HTT
T ss_pred HHHHhcCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHc-CCC----------------CCCHHHHHHHHHHHH--HCC
Confidence 567778889999999998876 45788888988888665 211 248999999999995 467
Q ss_pred CHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCC
Q 029199 83 NPLFLSNYAQFLYQ---SKQDLPKAEEYYSRAILADP--GDGEILSQYAKLVWE----LHNDQDRAATYYERAVHASPED 153 (197)
Q Consensus 83 ~~~~~~~la~~l~~---~~g~~~~A~~~~~~al~l~P--~~~~~~~~lg~~l~~----~~~~~~~A~~~~~~al~~~p~~ 153 (197)
++.++++||.++.. ..+++++|+.+|+++++..| +++.+++++|.+|.. .+ ++++|+.+|++++++ |.+
T Consensus 84 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~-~~~ 161 (212)
T 3rjv_A 84 SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPE-DDVKASEYFKGSSSL-SRT 161 (212)
T ss_dssp CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSC-CHHHHHHHHHHHHHT-SCT
T ss_pred CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHc-CCC
Confidence 99999999955542 15799999999999999988 469999999999888 55 599999999999998 778
Q ss_pred HHHHHHHHHHHHHc-C-----CccccccCCCcc
Q 029199 154 SHVHASYAGFLWET-E-----EDNDECDAPSEL 180 (197)
Q Consensus 154 ~~~~~~la~~~~~~-g-----~~~ea~~~~~~~ 180 (197)
+.+++++|.+|... | ++++|...|++.
T Consensus 162 ~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 162 GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 88999999999875 3 788888888774
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.53 E-value=3.4e-14 Score=98.31 Aligned_cols=101 Identities=17% Similarity=0.153 Sum_probs=93.7
Q ss_pred HhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199 78 EENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVH 157 (197)
Q Consensus 78 ~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~ 157 (197)
+.+|.++.++..+|..++. .|++++|+..|+++++.+|+++.++.++|.++...+ ++++|+.++++++..+|+++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~ 83 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMK-VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLG-NYAGAVQDCERAICIDPAYSKAY 83 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hcchhhhHHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh-chHHHHHHHHHHHhcCccCHHHH
Confidence 4567778899999988887 999999999999999999999999999999999988 49999999999999999999999
Q ss_pred HHHHHHHHHcCCccccccCCCcc
Q 029199 158 ASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 158 ~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+.+|.++..+|++++|...+++.
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~ 106 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKA 106 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999888875
No 147
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.53 E-value=1.2e-14 Score=116.30 Aligned_cols=151 Identities=13% Similarity=0.011 Sum_probs=119.1
Q ss_pred hHHHHHHHHhhhcCcccccCCCChhhH----H--hhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC
Q 029199 7 SEEVKVMEALWNAGFEQERGTVGQEMY----L--AKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN 80 (197)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~~p~~~~~~----~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 80 (197)
-..+++.+|+..+...++..+.++... + ..|..... .|++++|+.+|++++++.
T Consensus 86 ~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~Ai~~~~~al~~~ 145 (293)
T 3u3w_A 86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK--------------------KVDYEYCILELKKLLNQQ 145 (293)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT--------------------SSCHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc--------------------ccCHHHHHHHHHHHHHHh
Confidence 345677888888888887777666521 2 23333322 489999999999999975
Q ss_pred CCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 029199 81 PGN------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILA-------DPGDGEILSQYAKLVWELHNDQDRAATYYERAV 147 (197)
Q Consensus 81 P~~------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l-------~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al 147 (197)
+.. ..+++++|.++.. .|++++|+.+|+++++. .|..+.+++++|.++..+|+ +++|+.++++++
T Consensus 146 ~~~~~~~~~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-y~~A~~~~~~al 223 (293)
T 3u3w_A 146 LTGIDVYQNLYIENAIANIYAE-NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-YEESLYQVNKAI 223 (293)
T ss_dssp CCCSCTTHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHH
Confidence 443 3378999977777 99999999999999953 23345688999999999885 999999999999
Q ss_pred HhCCCC------HHHHHHHHHHHHHcCC-ccccccCCCc
Q 029199 148 HASPED------SHVHASYAGFLWETEE-DNDECDAPSE 179 (197)
Q Consensus 148 ~~~p~~------~~~~~~la~~~~~~g~-~~ea~~~~~~ 179 (197)
++.+.. +.+++++|.++..+|+ +++|...+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 987554 7899999999999996 5898877776
No 148
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3.9e-14 Score=100.66 Aligned_cols=101 Identities=16% Similarity=0.064 Sum_probs=94.6
Q ss_pred HhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 029199 78 EENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD---GEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS 154 (197)
Q Consensus 78 ~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~ 154 (197)
..+|.+...++.+|..++. .|++++|+.+|+++++++|++ +.++.++|.++...+ ++++|+.+|+++++++|+++
T Consensus 22 ~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~ 99 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFK-CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLE-DYDKAETEASKAIEKDGGDV 99 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTSCCH
T ss_pred ccchHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHhhCccCH
Confidence 4578899999999977776 999999999999999999998 999999999999988 49999999999999999999
Q ss_pred HHHHHHHHHHHHcCCccccccCCCcc
Q 029199 155 HVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 155 ~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.+++++|.++..+|++++|...+++.
T Consensus 100 ~~~~~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 100 KALYRRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999888875
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.53 E-value=9.9e-14 Score=95.13 Aligned_cols=100 Identities=20% Similarity=0.384 Sum_probs=90.5
Q ss_pred hCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199 79 ENPGN-PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVH 157 (197)
Q Consensus 79 ~~P~~-~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~ 157 (197)
.+|.. ..+++.+|.++.. .|++++|+..|+++++.+|+++.++..+|.++...++ +++|+.+|+++++.+|+++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~ 80 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAW 80 (125)
T ss_dssp ----CHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCccccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCCccHHHH
Confidence 46666 7889999988777 9999999999999999999999999999999999884 9999999999999999999999
Q ss_pred HHHHHHHHHcCCccccccCCCcc
Q 029199 158 ASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 158 ~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
..+|.++...|++++|...++++
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999999888874
No 150
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=2e-15 Score=124.94 Aligned_cols=156 Identities=13% Similarity=0.097 Sum_probs=123.8
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCCh----hhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQ----EMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVE 78 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 78 (197)
|..+-..|++.+|+..|..+++..|.++ .+++..|..+... |++++|+.+|+++++
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~--------------------g~~~~A~~~~~~al~ 114 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYL--------------------GDYNKAMQYHKHDLT 114 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH--------------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHH
Confidence 4566778899999999999999999987 4677777776653 888888888888888
Q ss_pred h------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHcCC-----------
Q 029199 79 E------NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA------DPGDGEILSQYAKLVWELHND----------- 135 (197)
Q Consensus 79 ~------~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l------~P~~~~~~~~lg~~l~~~~~~----------- 135 (197)
+ +|....++..+|.++.. .|++++|+.+|++++++ .|....++.++|.++...| +
T Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~ 192 (411)
T 4a1s_A 115 LAKSMNDRLGEAKSSGNLGNTLKV-MGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG-KHLGQRNPGKFG 192 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HHHHHHSTTCCC
T ss_pred HHHHccCchHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC-cccccccchhhh
Confidence 7 57777788888877766 88888888888888888 5666778888888888877 6
Q ss_pred ------HHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 136 ------QDRAATYYERAVHAS------PEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 136 ------~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+++|+++|++++++. |....++.++|.++..+|++++|...+++.
T Consensus 193 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 249 (411)
T 4a1s_A 193 DDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER 249 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 788888888887763 334457888888888888888887777664
No 151
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.51 E-value=6.8e-14 Score=111.93 Aligned_cols=98 Identities=16% Similarity=0.170 Sum_probs=93.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199 81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASY 160 (197)
Q Consensus 81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 160 (197)
|+++..++.+|..++. .|++++|+..|+++++++|+++.+++++|.++..+|+ +++|+..|+++++++|+++.+++++
T Consensus 1 p~~a~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l 78 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFV-GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ-PEQALADCRRALELDGQSVKAHFFL 78 (281)
T ss_dssp CCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred ChhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 6788999999988887 9999999999999999999999999999999999885 9999999999999999999999999
Q ss_pred HHHHHHcCCccccccCCCcc
Q 029199 161 AGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 161 a~~~~~~g~~~ea~~~~~~~ 180 (197)
|.++..+|++++|...|++.
T Consensus 79 g~~~~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRA 98 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999888874
No 152
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.51 E-value=1.4e-15 Score=125.08 Aligned_cols=132 Identities=14% Similarity=0.054 Sum_probs=80.6
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCCh-----------------hhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQ-----------------EMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGD 65 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~-----------------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 65 (197)
|+++-..+++.+|+..|..+++..|.++ .+++..|..+.. .|+
T Consensus 186 g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~--------------------~g~ 245 (338)
T 2if4_A 186 GNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK--------------------LKR 245 (338)
T ss_dssp HHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHT--------------------TTC
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHH--------------------cCC
Confidence 5666677888999999999999999877 478888888766 499
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 029199 66 SQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYER 145 (197)
Q Consensus 66 ~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~ 145 (197)
+++|+.+|+++++++|++..+|+++|.++.. +|++++|+.+|+++++++|+++.++.+++.+.....+..+++...|.+
T Consensus 246 ~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~-~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~ 324 (338)
T 2if4_A 246 YDEAIGHCNIVLTEEEKNPKALFRRGKAKAE-LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKG 324 (338)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987776 999999999999999999999999999998866656568899999999
Q ss_pred HHHhCCCCHH
Q 029199 146 AVHASPEDSH 155 (197)
Q Consensus 146 al~~~p~~~~ 155 (197)
++...|+++.
T Consensus 325 ~l~~~p~~~~ 334 (338)
T 2if4_A 325 IFKGKDEGGA 334 (338)
T ss_dssp ----------
T ss_pred hhCCCCCCCC
Confidence 9999998764
No 153
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.50 E-value=6.9e-14 Score=97.62 Aligned_cols=94 Identities=9% Similarity=0.019 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 029199 85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG---EILSQYAKLVWELHNDQDRAATYYERAVHASPED---SHVHA 158 (197)
Q Consensus 85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~---~~~~~ 158 (197)
.+++.+|..++. .|++++|+..|+++++.+|+++ .+++.+|.+++..| ++++|+.+|+++++.+|++ +.+++
T Consensus 3 ~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (129)
T 2xev_A 3 RTAYNVAFDALK-NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATR-NFQLAEAQFRDLVSRYPTHDKAAGGLL 80 (129)
T ss_dssp CCHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence 357788988887 9999999999999999999999 89999999999988 4999999999999999999 89999
Q ss_pred HHHHHHHHcCCccccccCCCcc
Q 029199 159 SYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 159 ~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.+|.++..+|++++|...++++
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999888885
No 154
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.50 E-value=3.3e-14 Score=117.47 Aligned_cols=148 Identities=11% Similarity=0.034 Sum_probs=132.1
Q ss_pred CcchhHHH-HHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCC-CHHHHHHHHHHHHHhC
Q 029199 3 GTALSEEV-KVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGG-DSQGVEEYYKKMVEEN 80 (197)
Q Consensus 3 ~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~ 80 (197)
|.++...+ .+.+++..++.+++.+|.+..+|..+++.+..+ .+ +++++++++.++++.+
T Consensus 95 ~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l-------------------~~~~~~~EL~~~~k~L~~d 155 (349)
T 3q7a_A 95 FSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRI-------------------SPQDPVSEIEYIHGSLLPD 155 (349)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH-------------------CCSCCHHHHHHHHHHTSSC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh-------------------cCCChHHHHHHHHHHHHhC
Confidence 45566666 488999999999999999999999999998874 13 6789999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC------HHHHHHHHHHH
Q 029199 81 PGNPLFLSNYAQFLYQSKQDLP--------KAEEYYSRAILADPGDGEILSQYAKLVWELHND------QDRAATYYERA 146 (197)
Q Consensus 81 P~~~~~~~~la~~l~~~~g~~~--------~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~------~~~A~~~~~~a 146 (197)
|++..+|..++.++.. .+.++ +++++++++++.+|.|..+|.+++.++..+++. ++++++++.++
T Consensus 156 pkNy~AW~~R~wvl~~-l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~a 234 (349)
T 3q7a_A 156 PKNYHTWAYLHWLYSH-FSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKS 234 (349)
T ss_dssp TTCHHHHHHHHHHHHH-HHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-hccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 9999999999966665 77777 999999999999999999999999998887742 68999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCc
Q 029199 147 VHASPEDSHVHASYAGFLWETEED 170 (197)
Q Consensus 147 l~~~p~~~~~~~~la~~~~~~g~~ 170 (197)
+.++|+|..+|+.+..++...|+.
T Consensus 235 I~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 235 IHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHhCCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999998875
No 155
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=4.3e-15 Score=121.90 Aligned_cols=147 Identities=11% Similarity=-0.033 Sum_probs=123.1
Q ss_pred HHHHhhhcCccccc------CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHH
Q 029199 12 VMEALWNAGFEQER------GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPL 85 (197)
Q Consensus 12 ~~~a~~~~~~~~~~------~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~ 85 (197)
+.+|+..+..+++. .|..+..+...|..+.. .|++++|+++|++++++.|....
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~--------------------~g~~~~A~~~~~~al~~~~~~~~ 222 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL--------------------LGNFRDAVIAHEQRLLIAKEFGD 222 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------HTBHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH--------------------ccCHHHHHHHHHHHHHHHHhcCC
Confidence 88888887766554 33344566677766655 39999999999999998776544
Q ss_pred ------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 029199 86 ------FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD------GEILSQYAKLVWELHNDQDRAATYYERAVHASPED 153 (197)
Q Consensus 86 ------~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~ 153 (197)
++.++|.++.. .|++++|+.+|++++++.|.. +.++.++|.++...| ++++|+.+|++++++.+..
T Consensus 223 ~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 223 KAAERRAYSNLGNAYIF-LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ-DYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHhc
Confidence 89999988877 999999999999999998876 789999999999988 4999999999999986544
Q ss_pred ------HHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 154 ------SHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 154 ------~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
..++..+|.++..+|++++|...+++.
T Consensus 301 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 301 NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 678999999999999999998888874
No 156
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.49 E-value=3.3e-15 Score=120.72 Aligned_cols=155 Identities=14% Similarity=0.091 Sum_probs=121.9
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCC------hhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVG------QEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKM 76 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 76 (197)
|+++...+++.+|+..|..+.+..+.. ...+...|..+.. .|++++|+.+|+++
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~--------------------~g~~~~A~~~~~~A 102 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKD--------------------LQRMPEAVQYIEKA 102 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------TTCGGGGHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------------------CCCHHHHHHHHHHH
Confidence 456677778888888887777665432 3455566665554 48999999999999
Q ss_pred HHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHH
Q 029199 77 VEENPGN------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD------GEILSQYAKLVWELHNDQDRAATYYE 144 (197)
Q Consensus 77 l~~~P~~------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~l~~~~~~~~~A~~~~~ 144 (197)
+++.+.. ..++.++|.++ .. |++++|+.+|++++++.|.. ..++.++|.++..+|+ +++|+.+|+
T Consensus 103 l~l~~~~g~~~~~a~~~~~lg~~~-~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~ 179 (307)
T 2ifu_A 103 SVMYVENGTPDTAAMALDRAGKLM-EP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK-FDEAAASLQ 179 (307)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHH-TT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHH-Hc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC-HHHHHHHHH
Confidence 9885432 46788899554 54 99999999999999998754 5789999999999885 999999999
Q ss_pred HHHHhCCCC------HHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 145 RAVHASPED------SHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 145 ~al~~~p~~------~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+++++.|++ ...+.++|.++..+|++++|...|++.
T Consensus 180 ~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 180 KEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999987654 347889999999999999998877774
No 157
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.49 E-value=5.1e-14 Score=121.50 Aligned_cols=152 Identities=12% Similarity=0.111 Sum_probs=128.0
Q ss_pred HHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHH-------HHHHHHHHHHH-hCCCCHH
Q 029199 14 EALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQ-------GVEEYYKKMVE-ENPGNPL 85 (197)
Q Consensus 14 ~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~A~~~~~~al~-~~P~~~~ 85 (197)
.++..|..+++..|.++.+|+..|..+..... .+...|+++ +|++.|+++++ ++|++..
T Consensus 256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~-------------~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~ 322 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSK-------------LLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML 322 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------HHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhch-------------hhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH
Confidence 55677888888899999999999987653100 000026766 99999999997 8999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-
Q 029199 86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG-EILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGF- 163 (197)
Q Consensus 86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~-~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~- 163 (197)
+|..++.++.. .|++++|+..|+++++++|.++ .+|.+++.++...|+ +++|++.|++|++..|.+...+...+.+
T Consensus 323 l~~~~~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~Al~~~~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 323 LYFAYADYEES-RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKAREDARTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTCTTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC-HHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 99999977776 9999999999999999999996 699999999998885 9999999999999999888888877766
Q ss_pred HHHcCCccccccCCCcc
Q 029199 164 LWETEEDNDECDAPSEL 180 (197)
Q Consensus 164 ~~~~g~~~ea~~~~~~~ 180 (197)
+...|+.++|...|++.
T Consensus 401 ~~~~~~~~~A~~~~e~a 417 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELG 417 (530)
T ss_dssp HHHTCCHHHHHHHHHHH
T ss_pred HHHcCChhHHHHHHHHH
Confidence 44689999999888874
No 158
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.49 E-value=8.1e-14 Score=96.51 Aligned_cols=98 Identities=17% Similarity=0.223 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Q 029199 81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED------- 153 (197)
Q Consensus 81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~------- 153 (197)
|..+..++.+|.+++. .|++++|+.+|+++++.+|+++.+++++|.++...++ +++|+.+|++++.+.|++
T Consensus 1 ~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~ 78 (131)
T 1elr_A 1 GKQALKEKELGNDAYK-KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD-YNKCRELCEKAIEVGRENREDYRQI 78 (131)
T ss_dssp CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred ChHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhccccchhHHHH
Confidence 3456788999988877 9999999999999999999999999999999999885 999999999999999887
Q ss_pred HHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 154 SHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 154 ~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+.+++++|.++..+|++++|...+++.
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999999999999999999888875
No 159
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.49 E-value=5.1e-15 Score=122.37 Aligned_cols=157 Identities=10% Similarity=-0.114 Sum_probs=130.2
Q ss_pred CCcchhHHHHHHHHhhhcCcccccCC------CChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHH
Q 029199 2 AGTALSEEVKVMEALWNAGFEQERGT------VGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKK 75 (197)
Q Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 75 (197)
+|+.+...|++.+|+..|..+++..+ ..+.++...|..... .|++++|+.++++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~--------------------~~~~~~A~~~~~~ 166 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYH--------------------MKQTHVSMYHILQ 166 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH--------------------cCCcHHHHHHHHH
Confidence 36667778889999999888776532 245667777777665 4999999999999
Q ss_pred HHHhCCC-------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 76 MVEENPG-------NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADP------GDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 76 al~~~P~-------~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P------~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
++++.+. ...+++++|.++.. .|++++|+.+|++++++.+ ....++.++|.++...|+ +++|+.+
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~-~~~A~~~ 244 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDD-FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD-DQMAVEH 244 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-HHHHHHH
Confidence 9987553 24578899988777 9999999999999999743 234688999999999885 9999999
Q ss_pred HHHHHH-----hCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 143 YERAVH-----ASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 143 ~~~al~-----~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
|+++++ .+|..+.++.++|.++..+|++++|...+++.
T Consensus 245 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 287 (378)
T 3q15_A 245 FQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEG 287 (378)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999 78888999999999999999999998777764
No 160
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=7.3e-15 Score=120.51 Aligned_cols=155 Identities=13% Similarity=0.047 Sum_probs=98.8
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCCh----hhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQ----EMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVE 78 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 78 (197)
|.++-..|++.+|+..|..+++..|.++ .+++..|...... |++++|+.+|++++.
T Consensus 16 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~--------------------g~~~~A~~~~~~al~ 75 (406)
T 3sf4_A 16 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYL--------------------HDYAKALEYHHHDLT 75 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHh--------------------cCHHHHHHHHHHHHH
Confidence 6677788999999999999999999985 4666777666554 666666666666665
Q ss_pred h------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCC-----------
Q 029199 79 E------NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD------GEILSQYAKLVWELHND----------- 135 (197)
Q Consensus 79 ~------~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~l~~~~~~----------- 135 (197)
+ .|....++.++|.++.. .|++++|+.+|++++++.|.. +.++.++|.++...| +
T Consensus 76 ~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~ 153 (406)
T 3sf4_A 76 LARTIGDQLGEAKASGNLGNTLKV-LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDVG 153 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HTCC-------C
T ss_pred HHHhccccHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC-Ccccccccchhh
Confidence 5 33345556666655554 666666666666666655432 335666666666655 4
Q ss_pred ---------HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 136 ---------QDRAATYYERAVHA------SPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 136 ---------~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
+++|+.+|++++.+ .|....++.++|.++..+|++++|...+++
T Consensus 154 ~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (406)
T 3sf4_A 154 EFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212 (406)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 56666666666554 233344556666666666666666555554
No 161
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=7.4e-15 Score=116.71 Aligned_cols=157 Identities=13% Similarity=0.026 Sum_probs=115.0
Q ss_pred CCcchhHHHHHHHHhhhcCcccccCCCCh----hhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHH
Q 029199 2 AGTALSEEVKVMEALWNAGFEQERGTVGQ----EMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMV 77 (197)
Q Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 77 (197)
.|..+-..|++.+|+..|..+++..|.++ .++...|..... .|++++|++++++++
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~al 70 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY--------------------LHDYAKALEYHHHDL 70 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHH
Confidence 36677888999999999999999999985 556667766655 377888888888877
Q ss_pred Hh------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCC----------
Q 029199 78 EE------NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD------GEILSQYAKLVWELHND---------- 135 (197)
Q Consensus 78 ~~------~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~l~~~~~~---------- 135 (197)
++ .|....++..+|.++.. .|++++|+..|++++++.|.. ..++.++|.++...| +
T Consensus 71 ~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~ 148 (338)
T 3ro2_A 71 TLARTIGDQLGEAKASGNLGNTLKV-LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDT 148 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-HTSSSSSCC--
T ss_pred HHhhcccccHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC-cccccchhhhh
Confidence 76 44556677777866666 788888888888887775543 237777777777766 5
Q ss_pred ----------HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 136 ----------QDRAATYYERAVHA------SPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 136 ----------~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+++|+.++++++.+ .|....++.++|.++..+|++++|...+++.
T Consensus 149 ~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 209 (338)
T 3ro2_A 149 GEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 209 (338)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 67777777777765 2333456777777777778777777666653
No 162
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.47 E-value=2.8e-14 Score=106.78 Aligned_cols=150 Identities=9% Similarity=-0.011 Sum_probs=117.8
Q ss_pred HHHHHHHHhhhcCcccccCC-CChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHH------hC
Q 029199 8 EEVKVMEALWNAGFEQERGT-VGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVE------EN 80 (197)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~~p-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~------~~ 80 (197)
..|++.+|...+.... .+| ..+.++...|..... .|++++|+.+|+++++ ..
T Consensus 4 ~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~al~~~~~~~~~ 62 (203)
T 3gw4_A 4 EAHDYALAERQAQALL-AHPATASGARFMLGYVYAF--------------------MDRFDEARASFQALQQQAQKSGDH 62 (203)
T ss_dssp ---CHHHHHHHHHHHH-TSTTTHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHHHTTCCH
T ss_pred ccccHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHH--------------------hCcHHHHHHHHHHHHHHHHHcCCc
Confidence 4677888888222222 244 567788888877665 4999999999999999 45
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--
Q 029199 81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA---DPGD----GEILSQYAKLVWELHNDQDRAATYYERAVHASP-- 151 (197)
Q Consensus 81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l---~P~~----~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p-- 151 (197)
|....++.++|.++.. .|++++|+.+|++++++ .|++ ..++.++|.++...|+ +++|+.++++++++.+
T Consensus 63 ~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~ 140 (203)
T 3gw4_A 63 TAEHRALHQVGMVERM-AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD-LAGARQEYEKSLVYAQQA 140 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhc
Confidence 5667889999977777 99999999999999998 4533 5679999999999885 9999999999997642
Q ss_pred CCH----HHHHHHHHHHHHcCCccccccCCCcc
Q 029199 152 EDS----HVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 152 ~~~----~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.++ .++.++|.++..+|++++|...+++.
T Consensus 141 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 141 DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 233 34689999999999999998877764
No 163
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.46 E-value=6.2e-13 Score=90.06 Aligned_cols=90 Identities=18% Similarity=0.205 Sum_probs=76.5
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHH
Q 029199 79 ENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPE--DSHV 156 (197)
Q Consensus 79 ~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~--~~~~ 156 (197)
.+|+++.+|+++|.+++. .|++++|+.+|+++++++|+++.+++++|.++..+|+ +++|+++|++++++.|. +...
T Consensus 2 ~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~~~~~~~~~ 79 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLK-HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDR-TDDAIDTYAQGIEVAREEGTQKD 79 (100)
T ss_dssp ---CCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CCccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhhhcCCchhH
Confidence 579999999999988887 9999999999999999999999999999999999885 99999999999999764 5666
Q ss_pred HHHHHHHHHHcCCc
Q 029199 157 HASYAGFLWETEED 170 (197)
Q Consensus 157 ~~~la~~~~~~g~~ 170 (197)
...+..++...+..
T Consensus 80 ~~~l~~~l~~~~~~ 93 (100)
T 3ma5_A 80 LSELQDAKLKAEGL 93 (100)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccc
Confidence 66777776655443
No 164
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=4.3e-15 Score=122.95 Aligned_cols=156 Identities=11% Similarity=0.001 Sum_probs=131.6
Q ss_pred CcchhHHHHHHHHhhhcCccccc------CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQER------GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKM 76 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~------~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 76 (197)
|.++...|++.+|+..|..+++. .|..+.++...|..+.. .|++++|+.+|+++
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~a 152 (411)
T 4a1s_A 93 GNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKV--------------------MGRFDEAAICCERH 152 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHH
Confidence 55677788889999988887766 56677888888887766 49999999999999
Q ss_pred HHh------CCCCHHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHhC------CCCHHHHHHHHH
Q 029199 77 VEE------NPGNPLFLSNYAQFLYQSKQD-----------------LPKAEEYYSRAILAD------PGDGEILSQYAK 127 (197)
Q Consensus 77 l~~------~P~~~~~~~~la~~l~~~~g~-----------------~~~A~~~~~~al~l~------P~~~~~~~~lg~ 127 (197)
+++ .|....++.++|.++.. .|+ +++|+.+|++++++. |....++.++|.
T Consensus 153 l~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 231 (411)
T 4a1s_A 153 LTLARQLGDRLSEGRALYNLGNVYHA-KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGN 231 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHH-HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHH-cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 998 67778899999988777 899 999999999998874 445568999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCccccccCCCcc
Q 029199 128 LVWELHNDQDRAATYYERAVHASPEDSH------VHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 128 ~l~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
++...|+ +++|+.+|++++++.|.... ++.++|.++..+|++++|...+++.
T Consensus 232 ~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 232 TYYLLGD-FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHcCC-hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 9999884 99999999999998775443 8899999999999999998888774
No 165
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=2.4e-14 Score=118.30 Aligned_cols=154 Identities=11% Similarity=-0.029 Sum_probs=118.0
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCC-------hhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVG-------QEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKK 75 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 75 (197)
|.++...+++.+|+..+..+++..+.. +.++...|..+.. .|++++|+.+|++
T Consensus 150 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~--------------------~g~~~~A~~~~~~ 209 (383)
T 3ulq_A 150 SESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLD--------------------LKQYEDAISHFQK 209 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHH--------------------hcCHHHHHHHHHH
Confidence 566777888888888888877764443 3466667766665 4999999999999
Q ss_pred HHHhCCCCH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199 76 MVEENPGNP------LFLSNYAQFLYQSKQDLPKAEEYYSRAIL-----AD-PGDGEILSQYAKLVWELHNDQDRAATYY 143 (197)
Q Consensus 76 al~~~P~~~------~~~~~la~~l~~~~g~~~~A~~~~~~al~-----l~-P~~~~~~~~lg~~l~~~~~~~~~A~~~~ 143 (197)
++++.|... .++.++|.++.. +|++++|+.+|+++++ .+ |..+.++.++|.++...|+ +++|+.++
T Consensus 210 al~~~~~~~~~~~~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~ 287 (383)
T 3ulq_A 210 AYSMAEAEKQPQLMGRTLYNIGLCKNS-QSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK-IDKAHEYH 287 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 999865443 589999988877 9999999999999999 57 8889999999999999885 99999999
Q ss_pred HHHHHhC-----CCCHHHHHHHHHHHHHcCC---ccccccCCC
Q 029199 144 ERAVHAS-----PEDSHVHASYAGFLWETEE---DNDECDAPS 178 (197)
Q Consensus 144 ~~al~~~-----p~~~~~~~~la~~~~~~g~---~~ea~~~~~ 178 (197)
++++++. |.....+..++.++...|+ ++++...++
T Consensus 288 ~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~ 330 (383)
T 3ulq_A 288 SKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE 330 (383)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 9999884 3322333455555555555 444444333
No 166
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.43 E-value=3.8e-13 Score=108.02 Aligned_cols=140 Identities=13% Similarity=-0.037 Sum_probs=116.6
Q ss_pred cchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCC
Q 029199 4 TALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGN 83 (197)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~ 83 (197)
.+|.++|++.+|...|......+|.+. .++.+|+.... .+++++|+.+|+++++..+..
T Consensus 110 ~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~--------------------~~r~~dA~~~l~~a~~~~d~~ 168 (282)
T 4f3v_A 110 ACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGA--------------------AERWTDVIDQVKSAGKWPDKF 168 (282)
T ss_dssp HHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHH--------------------TTCHHHHHHHHTTGGGCSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHH--------------------cCCHHHHHHHHHHhhccCCcc
Confidence 468899999999999999999999888 88888887655 499999999999887653221
Q ss_pred --HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 029199 84 --PLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD--PG-DGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHA 158 (197)
Q Consensus 84 --~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~--P~-~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 158 (197)
..+++++|.++.. +|++++|+.+|++++... |. .+++++++|.++..+|+ .++|..+|++++..+|+ +.++.
T Consensus 169 ~~~~a~~~LG~al~~-LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr-~deA~~~l~~a~a~~P~-~~~~~ 245 (282)
T 4f3v_A 169 LAGAAGVAHGVAAAN-LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN-ESAAVALLEWLQTTHPE-PKVAA 245 (282)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHSCC-HHHHH
T ss_pred cHHHHHHHHHHHHHH-CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCc-HHHHH
Confidence 3589999977776 999999999999998654 55 67899999999999996 89999999999999999 88877
Q ss_pred HHHHHHHHc
Q 029199 159 SYAGFLWET 167 (197)
Q Consensus 159 ~la~~~~~~ 167 (197)
.+..--+..
T Consensus 246 aL~~~~~~~ 254 (282)
T 4f3v_A 246 ALKDPSYRL 254 (282)
T ss_dssp HHHCTTCCC
T ss_pred HHhCCCCCC
Confidence 765444333
No 167
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.42 E-value=1.3e-13 Score=95.66 Aligned_cols=98 Identities=19% Similarity=0.106 Sum_probs=85.2
Q ss_pred HHHHHHHHhhhcCccccc---CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCH
Q 029199 8 EEVKVMEALWNAGFEQER---GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNP 84 (197)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~---~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~ 84 (197)
..|++.+|+..|..+++. +|+++..++..|..+.. .|++++|+++|+++++++|+++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~--------------------~~~~~~A~~~~~~al~~~p~~~ 61 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT--------------------LGEYRKAEAVLANGVKQFPNHQ 61 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCCch
Confidence 357888999999999999 68899999999998877 4999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199 85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYA 126 (197)
Q Consensus 85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg 126 (197)
.+++++|.++.. .|++++|+..|+++++.+|+++.+.....
T Consensus 62 ~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 62 ALRVFYAMVLYN-LGRYEQGVELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 999999988887 99999999999999999999998765443
No 168
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.42 E-value=1.9e-14 Score=114.30 Aligned_cols=147 Identities=10% Similarity=-0.034 Sum_probs=119.8
Q ss_pred HHHHhhhcCccccc------CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCH-
Q 029199 12 VMEALWNAGFEQER------GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNP- 84 (197)
Q Consensus 12 ~~~a~~~~~~~~~~------~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~- 84 (197)
+.+|+..+..+++. .|..+..+...|..+.. .|++++|+++|++++++.|...
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL--------------------LGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--------------------HTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--------------------hCCHHHHHHHHHHHHHHHHhcCC
Confidence 78888777665543 23334566666666555 3999999999999998865543
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 029199 85 -----LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD------GEILSQYAKLVWELHNDQDRAATYYERAVHASPED 153 (197)
Q Consensus 85 -----~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~ 153 (197)
.++.++|.++.. .|++++|+.+|++++++.|.. +.++.++|.++...|+ +++|+.++++++++.|..
T Consensus 219 ~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIF-LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhc
Confidence 388999988777 999999999999999998766 7899999999999884 999999999999886543
Q ss_pred ------HHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 154 ------SHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 154 ------~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
..++..+|.++..+|++++|...+++.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 558899999999999999998888764
No 169
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.40 E-value=1.9e-14 Score=115.55 Aligned_cols=169 Identities=8% Similarity=-0.153 Sum_probs=132.6
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHh-hhcc--cCCCCCCCCCCCCCCCC----CcccCCCCCHHHHHHHHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLA-KGLG--VGGRGGRGGGTGGGGSG----FYPAGSGGDSQGVEEYYKK 75 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-~g~~--~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~A~~~~~~ 75 (197)
|.+|....+..+++..+....+..|..-..++. .|+- +..- ..++.-. ...+...|++++|.+.|+.
T Consensus 54 ~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~------v~~r~dl~LayA~~L~~~g~y~eA~~~l~~ 127 (282)
T 4f3v_A 54 RVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP------VTSPLAITMGFAACEAAQGNYADAMEALEA 127 (282)
T ss_dssp HHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE------CSSHHHHHHHHHHHHHHHTCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc------cCCHhHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 567788888889999998888888887777776 5542 1000 0000000 0122335999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Q 029199 76 MVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD-PGD-GEILSQYAKLVWELHNDQDRAATYYERAVHAS--P 151 (197)
Q Consensus 76 al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~-P~~-~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~--p 151 (197)
++...|++. +++.+|.+++. .+++++|+.+|+++++.. |.. ..+++++|.++..+|+ +++|+.+|++++... |
T Consensus 128 ~~~~~p~~~-~~~~~a~l~~~-~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~-~~eAl~~l~~a~~g~~~P 204 (282)
T 4f3v_A 128 APVAGSEHL-VAWMKAVVYGA-AERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL-FTEAERRLTEANDSPAGE 204 (282)
T ss_dssp SCCTTCHHH-HHHHHHHHHHH-TTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTSTTTT
T ss_pred HHhcCCchH-HHHHHHHHHHH-cCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC-HHHHHHHHHHHhcCCCCc
Confidence 999999999 99999977777 999999999999887753 221 3589999999999995 999999999998654 5
Q ss_pred C-CHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 152 E-DSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 152 ~-~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
. .+++++++|.++.++|+.++|...|+++
T Consensus 205 ~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 205 ACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp TTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5 6789999999999999999999999886
No 170
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.40 E-value=6.8e-13 Score=112.97 Aligned_cols=153 Identities=19% Similarity=0.180 Sum_probs=123.1
Q ss_pred CcchhHHH---HHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHh
Q 029199 3 GTALSEEV---KVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEE 79 (197)
Q Consensus 3 ~~~~~~~~---~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 79 (197)
|.+|.+.| +..+|+..|..+.+.+|.++..++..|..+..-. ...+++++|+++|+++.
T Consensus 183 g~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~----------------~~~~d~~~A~~~~~~aa-- 244 (452)
T 3e4b_A 183 ATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDAT----------------LGTPDEKTAQALLEKIA-- 244 (452)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGG----------------GSSCCHHHHHHHHHHHG--
T ss_pred HHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------------CCCCCHHHHHHHHHHHc--
Confidence 44555566 9999999999999999999987777777664310 01378999999999988
Q ss_pred CCCCHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCC
Q 029199 80 NPGNPLFLSNYAQFLY--QSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELH----NDQDRAATYYERAVHASPED 153 (197)
Q Consensus 80 ~P~~~~~~~~la~~l~--~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~----~~~~~A~~~~~~al~~~p~~ 153 (197)
|.++.+++++|.+++ ...+++++|+.+|+++.+. .++.+++++|.+|.. | +++++|+.+|+++. |.+
T Consensus 245 -~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~-G~g~~~d~~~A~~~~~~Aa---~g~ 317 (452)
T 3e4b_A 245 -PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYYE-GKWVPADAKAAEAHFEKAV---GRE 317 (452)
T ss_dssp -GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH-CSSSCCCHHHHHHHHHTTT---TTC
T ss_pred -CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHh---CCC
Confidence 899999999997745 4478999999999999854 589999999988874 5 26899999999998 889
Q ss_pred HHHHHHHHHHHHH----cCCccccccCCCcc
Q 029199 154 SHVHASYAGFLWE----TEEDNDECDAPSEL 180 (197)
Q Consensus 154 ~~~~~~la~~~~~----~g~~~ea~~~~~~~ 180 (197)
+.+++++|.+|.. ..++++|...|++.
T Consensus 318 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 348 (452)
T 3e4b_A 318 VAADYYLGQIYRRGYLGKVYPQKALDHLLTA 348 (452)
T ss_dssp HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 9999999998887 33777787777764
No 171
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.40 E-value=1.9e-13 Score=104.83 Aligned_cols=138 Identities=17% Similarity=0.101 Sum_probs=116.8
Q ss_pred HHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 14 EALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQF 93 (197)
Q Consensus 14 ~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~ 93 (197)
+|+..|.++. +..++..++..|..+.. .+++++|+++|+++++. .++.++++||.+
T Consensus 4 eA~~~~~~aa--~~g~~~a~~~lg~~~~~--------------------~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~ 59 (212)
T 3rjv_A 4 EPGSQYQQQA--EAGDRRAQYYLADTWVS--------------------SGDYQKAEYWAQKAAAQ--GDGDALALLAQL 59 (212)
T ss_dssp CTTHHHHHHH--HTTCHHHHHHHHHHHHH--------------------HTCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred hHHHHHHHHH--HCCCHHHHHHHHHHHhc--------------------CCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Confidence 4556665544 44789999998888765 38999999999999875 689999999955
Q ss_pred HHHhcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Q 029199 94 LYQSKQ----DLPKAEEYYSRAILADPGDGEILSQYAKLVWE----LHNDQDRAATYYERAVHASP--EDSHVHASYAGF 163 (197)
Q Consensus 94 l~~~~g----~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~----~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~ 163 (197)
+.. + ++++|+.+|++++ ++.++.+++++|.+|.. .+ ++++|+++|+++++..| +++.+++++|.+
T Consensus 60 y~~--~g~~~~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~ 134 (212)
T 3rjv_A 60 KIR--NPQQADYPQARQLAEKAV--EAGSKSGEIVLARVLVNRQAGAT-DVAHAITLLQDAARDSESDAAVDAQMLLGLI 134 (212)
T ss_dssp TTS--STTSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHTCGGGSSC-CHHHHHHHHHHHTSSTTSHHHHHHHHHHHHH
T ss_pred HHc--CCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCcc-CHHHHHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence 543 6 8999999999995 56899999999999876 45 69999999999999988 459999999999
Q ss_pred HHH----cCCccccccCCCcc
Q 029199 164 LWE----TEEDNDECDAPSEL 180 (197)
Q Consensus 164 ~~~----~g~~~ea~~~~~~~ 180 (197)
|.. .+++++|...|++.
T Consensus 135 y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 135 YASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHTSSSSCCHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHH
Confidence 999 88899998888885
No 172
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.39 E-value=2.3e-13 Score=92.29 Aligned_cols=95 Identities=13% Similarity=0.094 Sum_probs=83.0
Q ss_pred ChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 029199 29 GQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYY 108 (197)
Q Consensus 29 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~ 108 (197)
++..++..|..+.. .|++++|++.|+++++++|+++.+|+++|.++.. .|++++|+.+|
T Consensus 3 ~~~~~~~~g~~~~~--------------------~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~ 61 (111)
T 2l6j_A 3 QFEKQKEQGNSLFK--------------------QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK-LGEYTQAIQMC 61 (111)
T ss_dssp HHHHHHHHHHHHHT--------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHH
Confidence 35566777766655 4999999999999999999999999999988887 99999999999
Q ss_pred HHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 029199 109 SRAILADPGD------GEILSQYAKLVWELHNDQDRAATYYER 145 (197)
Q Consensus 109 ~~al~l~P~~------~~~~~~lg~~l~~~~~~~~~A~~~~~~ 145 (197)
+++++++|++ +.+++++|.++..+|. +++|+..+++
T Consensus 62 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~ 103 (111)
T 2l6j_A 62 QQGLRYTSTAEHVAIRSKLQYRLELAQGAVGS-VQIPVVEVDE 103 (111)
T ss_dssp HHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHC-CCCCSSSSSS
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHh-HhhhHhHHHH
Confidence 9999999999 9999999999999885 6777766554
No 173
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.38 E-value=4e-12 Score=83.11 Aligned_cols=85 Identities=26% Similarity=0.356 Sum_probs=76.4
Q ss_pred CChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 029199 28 VGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEY 107 (197)
Q Consensus 28 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~ 107 (197)
.++..++..|..+.. .|++++|+.+|+++++++|+++.+++++|.++.. .|++++|+.+
T Consensus 7 ~~~~~~~~la~~~~~--------------------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~ 65 (91)
T 1na3_A 7 NSAEAWYNLGNAYYK--------------------QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEY 65 (91)
T ss_dssp HHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHH--------------------ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhhHHHHHHH
Confidence 456777777777655 4999999999999999999999999999988887 9999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHc
Q 029199 108 YSRAILADPGDGEILSQYAKLVWELH 133 (197)
Q Consensus 108 ~~~al~l~P~~~~~~~~lg~~l~~~~ 133 (197)
|+++++++|+++.++.++|.++...|
T Consensus 66 ~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 66 YQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999987653
No 174
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.37 E-value=4.7e-13 Score=111.44 Aligned_cols=118 Identities=18% Similarity=0.064 Sum_probs=106.6
Q ss_pred CcchhHHHHHHHHhhhcCcccc----------------cCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCH
Q 029199 3 GTALSEEVKVMEALWNAGFEQE----------------RGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDS 66 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~----------------~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 66 (197)
|+++-..+++.+|+..|..+++ .+|.++.+++..|..+.. .|++
T Consensus 230 g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--------------------~g~~ 289 (370)
T 1ihg_A 230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK--------------------MSDW 289 (370)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH--------------------TTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh--------------------ccCH
Confidence 5677788899999999999988 788889999999998877 4999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 029199 67 QGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATY 142 (197)
Q Consensus 67 ~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~ 142 (197)
++|+++|+++++++|+++.+|+++|.++.. +|++++|+..|+++++++|+++.++..++.++..+++ .+++...
T Consensus 290 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~-~~~a~k~ 363 (370)
T 1ihg_A 290 QGAVDSCLEALEIDPSNTKALYRRAQGWQG-LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA-QKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-HHHHHHC
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 999999999999999999999999988887 9999999999999999999999999999999988885 6666543
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.36 E-value=6.6e-13 Score=94.69 Aligned_cols=115 Identities=11% Similarity=0.067 Sum_probs=98.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNP------LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD------GEILSQYAKLVW 130 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~------~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~l~ 130 (197)
.|++++|+.+|++++++.|... .++.++|.++.. .|++++|+.+|++++++.+.. ..++.++|.++.
T Consensus 22 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 100 (164)
T 3ro3_A 22 LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF-LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 100 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 4999999999999999876432 478899988877 999999999999999986653 678999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 131 ELHNDQDRAATYYERAVHASPE------DSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 131 ~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
..++ +++|+.++++++++.+. ...++.++|.++..+|++++|...+++
T Consensus 101 ~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 101 LLQD-YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhh-HHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9885 99999999999987432 256789999999999999999887776
No 176
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.34 E-value=1.9e-11 Score=97.68 Aligned_cols=117 Identities=10% Similarity=0.032 Sum_probs=99.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH
Q 029199 62 SGGDSQGVEEYYKKMVEENPGNPL------FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD------GEILSQYAKLV 129 (197)
Q Consensus 62 ~~g~~~~A~~~~~~al~~~P~~~~------~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~l 129 (197)
..|++++|++.|+++++..|.... .++.+|.++.. .|++++|+.+|++++++.+.. ..+++++|.++
T Consensus 87 ~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 2qfc_A 87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK-KVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp HTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 359999999999999999887653 35567755554 899999999999999876554 66899999999
Q ss_pred HHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCCccccccCCCcc
Q 029199 130 WELHNDQDRAATYYERAV---HASPEDS----HVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 130 ~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
...| ++++|+.+|++++ +..|++. .+++++|.++..+|++++|...+++.
T Consensus 166 ~~~~-~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 166 AENG-YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcC-CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 9988 4999999999999 5567654 68999999999999999998888874
No 177
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.33 E-value=2e-12 Score=86.45 Aligned_cols=67 Identities=13% Similarity=0.222 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199 89 NYAQFLYQSKQDLPKAEEYYSRAILADPGDGE-ILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVH 157 (197)
Q Consensus 89 ~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~-~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~ 157 (197)
+.|..++. .|++++|+..|+++++.+|+++. +++++|.++...|+ +++|+++|+++++++|+++.++
T Consensus 5 ~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 5 KTIKELIN-QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGD-WQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHH-HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHH
Confidence 34444444 55555555555555555555555 55555555555553 5555555555555555555554
No 178
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.33 E-value=8.2e-13 Score=108.31 Aligned_cols=156 Identities=13% Similarity=0.039 Sum_probs=123.6
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChh-----hHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQE-----MYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMV 77 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 77 (197)
|.++-..|++.+|+..+..+++..|.+.. ++...|..+.. .|++++|++.+++++
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~al 80 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC--------------------KGELTRSLALMQQTE 80 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH--------------------HTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHh--------------------cCcHHHHHHHHHHHH
Confidence 44556677888888888877776665532 34445544443 499999999999999
Q ss_pred HhCCCCH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199 78 EENPGNP------LFLSNYAQFLYQSKQDLPKAEEYYSRAILAD--------PGDGEILSQYAKLVWELHNDQDRAATYY 143 (197)
Q Consensus 78 ~~~P~~~------~~~~~la~~l~~~~g~~~~A~~~~~~al~l~--------P~~~~~~~~lg~~l~~~~~~~~~A~~~~ 143 (197)
.+.|... .++.++|.++.. .|++++|+.+|++++++. |....++.++|.+++..|+ +++|..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~la~~~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~ 158 (373)
T 1hz4_A 81 QMARQHDVWHYALWSLIQQSEILFA-QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR-LDEAEASA 158 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC-HHHHHHHH
Confidence 9876542 346789977777 999999999999999885 4456788899999999885 99999999
Q ss_pred HHHHHhCCC-----CHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 144 ERAVHASPE-----DSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 144 ~~al~~~p~-----~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
++++++.|. ...++.++|.++...|++++|...+++.
T Consensus 159 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 200 (373)
T 1hz4_A 159 RSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRL 200 (373)
T ss_dssp HHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999875 3467899999999999999998777764
No 179
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.31 E-value=1.8e-12 Score=104.63 Aligned_cols=116 Identities=15% Similarity=0.195 Sum_probs=99.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHH
Q 029199 62 SGGDSQGVEEYYKKMVEENPGN------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG--D----GEILSQYAKLV 129 (197)
Q Consensus 62 ~~g~~~~A~~~~~~al~~~P~~------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~--~----~~~~~~lg~~l 129 (197)
..|++++|+.+|++++++.+.. ..++.++|.++.. +|++++|+.+|++++++.+. + ..++.++|.++
T Consensus 48 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~ 126 (307)
T 2ifu_A 48 NAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKD-LQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM 126 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3599999999999999987643 5688899977776 99999999999999998542 2 46889999998
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 130 WELHNDQDRAATYYERAVHASPED------SHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 130 ~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.. | ++++|+.+|++++++.|.. ..++.++|.++..+|++++|+..|++.
T Consensus 127 ~~-g-~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 181 (307)
T 2ifu_A 127 EP-L-DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKE 181 (307)
T ss_dssp TT-T-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Hc-C-CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 87 6 5999999999999998754 578999999999999999999888875
No 180
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.30 E-value=6.1e-12 Score=86.56 Aligned_cols=77 Identities=13% Similarity=-0.040 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 103 KAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 103 ~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+|+..|+++++.+|+++.+++++|.++...|+ +++|+.+|+++++++|+++.+|+++|.++..+|++++|...+++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQ-FDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 58899999999999999999999999999885 999999999999999999999999999999999999999988874
No 181
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.29 E-value=1.2e-12 Score=108.16 Aligned_cols=127 Identities=9% Similarity=-0.049 Sum_probs=103.5
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCC-------ChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTV-------GQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKK 75 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 75 (197)
|.++...+++.+|+..+..+++..+. .+.++...|..... .|++++|+++|++
T Consensus 148 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~--------------------~~~~~~A~~~~~~ 207 (378)
T 3q15_A 148 AEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDD--------------------FKHYDKALPHLEA 207 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH--------------------hCCHHHHHHHHHH
Confidence 55667778888888888777765443 23455666666655 4999999999999
Q ss_pred HHHhCCC------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 029199 76 MVEENPG------NPLFLSNYAQFLYQSKQDLPKAEEYYSRAIL-----ADPGDGEILSQYAKLVWELHNDQDRAATYYE 144 (197)
Q Consensus 76 al~~~P~------~~~~~~~la~~l~~~~g~~~~A~~~~~~al~-----l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~ 144 (197)
++++.+. ...++.++|.++.. .|++++|+.+|+++++ .+|..+.++.++|.++...|+ +++|+.+++
T Consensus 208 al~~~~~~~~~~~~~~~~~~lg~~y~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~ 285 (378)
T 3q15_A 208 ALELAMDIQNDRFIAISLLNIANSYDR-SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ-TQKAFQFIE 285 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCC-HHHHHHHHH
Confidence 9997432 24578899988777 9999999999999999 889999999999999999885 999999999
Q ss_pred HHHHhCC
Q 029199 145 RAVHASP 151 (197)
Q Consensus 145 ~al~~~p 151 (197)
+++++.+
T Consensus 286 ~al~~~~ 292 (378)
T 3q15_A 286 EGLDHIT 292 (378)
T ss_dssp HHHHHCC
T ss_pred HHHHHHH
Confidence 9999843
No 182
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.28 E-value=1.3e-11 Score=105.42 Aligned_cols=109 Identities=14% Similarity=0.212 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HcCCH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQ---DLPKAEEYYSRAILADPGDGEILSQYAKLVWE----LHNDQ 136 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g---~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~----~~~~~ 136 (197)
+++++|+.+|+++++. .++.+++++|.++.. .| ++++|+.+|+++++. .++.+++++|.++.. .+ ++
T Consensus 310 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~-~~ 383 (490)
T 2xm6_A 310 KNREQAISWYTKSAEQ--GDATAQANLGAIYFR-LGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKK-DE 383 (490)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH-SCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC-CH
T ss_pred CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHh-CCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCC-CH
Confidence 7889999999998876 467888889966665 45 788999999999876 678999999988877 45 58
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCccccccCCCcc
Q 029199 137 DRAATYYERAVHASPEDSHVHASYAGFLWE----TEEDNDECDAPSEL 180 (197)
Q Consensus 137 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~ea~~~~~~~ 180 (197)
++|+.+|+++++. .++.+++++|.++.. .+++++|...|++.
T Consensus 384 ~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 384 QQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9999999999875 468899999999998 78999988888875
No 183
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.28 E-value=9.5e-12 Score=99.65 Aligned_cols=129 Identities=12% Similarity=0.069 Sum_probs=101.6
Q ss_pred HHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC--CHHH
Q 029199 9 EVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG--NPLF 86 (197)
Q Consensus 9 ~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~--~~~~ 86 (197)
+.++.+++... +|++++.++..|++....-+.. ...+...+....|...+++++++||+ +..+
T Consensus 137 ~~~~~~~l~~~------~~~dve~L~W~ai~~ss~a~~~---------~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA 201 (301)
T 3u64_A 137 EQRLHKVLSRC------TRVDVGTLYWVGTGYVAAFALT---------PLGSALPDTVHAAVMMLERACDLWPSYQEGAV 201 (301)
T ss_dssp HHHHHHHHTTC------CGGGHHHHHHHHHHHHHHHTTS---------CTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred hhhHHHHHHHc------CccccHHHHHHHHHHHHHHhcC---------CCChHHHHhHHHHHHHHHHHHHhCCCcccCHH
Confidence 45667776664 7889999998888865421100 00112236778999999999999999 6779
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 029199 87 LSNYAQFLYQS----KQDLPKAEEYYSRAILADPGD-GEILSQYAKLVWELHNDQDRAATYYERAVHASPE 152 (197)
Q Consensus 87 ~~~la~~l~~~----~g~~~~A~~~~~~al~l~P~~-~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~ 152 (197)
|.-+|.+++.. -|+.++|+++|++|++++|+. +.+++.+|..++...+++++|..+++++++.+|.
T Consensus 202 ~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 202 WNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 99999555541 299999999999999999975 9999999999988644699999999999999876
No 184
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.26 E-value=1e-10 Score=77.97 Aligned_cols=84 Identities=14% Similarity=0.151 Sum_probs=75.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 029199 61 GSGGDSQGVEEYYKKMVEENPGNPL-FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRA 139 (197)
Q Consensus 61 ~~~g~~~~A~~~~~~al~~~P~~~~-~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A 139 (197)
...|++++|++.|+++++.+|+++. +|+++|.++.. .|++++|+.+|+++++++|+++.++.+ + .+.++
T Consensus 11 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~--------~-~~~~a 80 (99)
T 2kc7_A 11 INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK-LGDWQKALNNYQSAIELNPDSPALQAR--------K-MVMDI 80 (99)
T ss_dssp HHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTSTHHHHH--------H-HHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCcHHHHHH--------H-HHHHH
Confidence 3469999999999999999999999 99999988887 999999999999999999999998755 3 37889
Q ss_pred HHHHHHHHHhCCCCH
Q 029199 140 ATYYERAVHASPEDS 154 (197)
Q Consensus 140 ~~~~~~al~~~p~~~ 154 (197)
+.+|++++..+|+++
T Consensus 81 ~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 81 LNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHCCTTHHHHCCS
T ss_pred HHHHHHHhccCcccc
Confidence 999999999888764
No 185
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.26 E-value=1e-11 Score=92.71 Aligned_cols=116 Identities=12% Similarity=0.001 Sum_probs=96.8
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHHcC
Q 029199 62 SGGDSQGVEEYYKKMVEENP-GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAIL------ADPGDGEILSQYAKLVWELHN 134 (197)
Q Consensus 62 ~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~------l~P~~~~~~~~lg~~l~~~~~ 134 (197)
..|++++|.+.++.... +| ....++..+|.++.. .|++++|+.+|+++++ ..|..+.++.++|.++...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAF-MDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 35999999996665544 55 678899999988777 9999999999999999 556777899999999999884
Q ss_pred CHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 135 DQDRAATYYERAVHA---SPED----SHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 135 ~~~~A~~~~~~al~~---~p~~----~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+++|+.++++++++ .+++ ..++.++|.++..+|++++|...+++.
T Consensus 82 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 82 -WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp -HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999998 4433 467899999999999999998887774
No 186
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.25 E-value=1.1e-11 Score=98.99 Aligned_cols=117 Identities=10% Similarity=0.018 Sum_probs=96.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH
Q 029199 62 SGGDSQGVEEYYKKMVEENPGNPL------FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD------GEILSQYAKLV 129 (197)
Q Consensus 62 ~~g~~~~A~~~~~~al~~~P~~~~------~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~l 129 (197)
..|++++|++.|+++++..|.++. .+..+|.++.. .+++++|+.+|++++.+.+.. ..++.++|.++
T Consensus 87 ~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 3u3w_A 87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK-KVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp HTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 359999999999999998888766 23357765554 889999999999999975543 33799999999
Q ss_pred HHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 130 WELHNDQDRAATYYERAVHA-------SPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 130 ~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
...| ++++|+.+|+++++. .|....+++++|.++.++|++++|...+++.
T Consensus 166 ~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 166 AENG-YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHTT-CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcC-CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9988 599999999999953 2333458899999999999999998887763
No 187
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.20 E-value=7.1e-11 Score=79.72 Aligned_cols=85 Identities=11% Similarity=0.041 Sum_probs=69.4
Q ss_pred cCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 029199 25 RGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKA 104 (197)
Q Consensus 25 ~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A 104 (197)
.+|+++..++..|..+.. .|++++|+.+|+++++++|+++.+|+++|.++.. .|++++|
T Consensus 2 ~~p~~~~~~~~lg~~~~~--------------------~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A 60 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLK--------------------HDNASRALALFEELVETDPDYVGTYYHLGKLYER-LDRTDDA 60 (100)
T ss_dssp ---CCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHH
T ss_pred CCccCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHH
Confidence 479999999999999877 4999999999999999999999999999988877 9999999
Q ss_pred HHHHHHHHHhCCC--CHHHHHHHHHHHH
Q 029199 105 EEYYSRAILADPG--DGEILSQYAKLVW 130 (197)
Q Consensus 105 ~~~~~~al~l~P~--~~~~~~~lg~~l~ 130 (197)
+..|++++++.|. +......+..++.
T Consensus 61 ~~~~~~al~l~~~~~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 61 IDTYAQGIEVAREEGTQKDLSELQDAKL 88 (100)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcCCchhHHHHHHHHHH
Confidence 9999999998663 3333344444433
No 188
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.19 E-value=1e-11 Score=88.44 Aligned_cols=128 Identities=19% Similarity=0.092 Sum_probs=102.9
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCCh------hhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQ------EMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKM 76 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 76 (197)
|.++...+++.+|+..+..+++..+... .++...|..... .|++++|+.+|+++
T Consensus 16 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 16 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF--------------------LGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHH
Confidence 5566777888999998888877655432 355666666555 49999999999999
Q ss_pred HHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 029199 77 VEENPGN------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADP------GDGEILSQYAKLVWELHNDQDRAATYYE 144 (197)
Q Consensus 77 l~~~P~~------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P------~~~~~~~~lg~~l~~~~~~~~~A~~~~~ 144 (197)
+++.+.. ..++.++|.++.. .|++++|+.++++++++.+ ..+.++.++|.++...|+ +++|+++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~ 153 (164)
T 3ro3_A 76 LLLARQLKDRAVEAQSCYSLGNTYTL-LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN-HDQAMHFAE 153 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC-HHHHHHHHH
Confidence 9987654 6688899988777 9999999999999998743 225688999999999885 999999999
Q ss_pred HHHHhCCC
Q 029199 145 RAVHASPE 152 (197)
Q Consensus 145 ~al~~~p~ 152 (197)
+++++...
T Consensus 154 ~a~~~~~~ 161 (164)
T 3ro3_A 154 KHLEISRE 161 (164)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 99987654
No 189
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.19 E-value=4.2e-11 Score=101.86 Aligned_cols=110 Identities=11% Similarity=0.115 Sum_probs=95.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HHcCCHHH
Q 029199 65 DSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSK----QDLPKAEEYYSRAILADPGDGEILSQYAKLVW--ELHNDQDR 138 (197)
Q Consensus 65 ~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~----g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~--~~~~~~~~ 138 (197)
++++|++.|+++++..|.++..++++|.++.. . +++++|+.+|+++. |.++.+++++|.+|+ ...+++++
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~-g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~ 269 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGD-ATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQ 269 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTC-GGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHH
Confidence 99999999999999999999999999966543 4 59999999999998 999999999999854 33447999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CccccccCCCccc
Q 029199 139 AATYYERAVHASPEDSHVHASYAGFLWETE-----EDNDECDAPSELD 181 (197)
Q Consensus 139 A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~ea~~~~~~~~ 181 (197)
|+.+|+++.+. .++.+++++|.+|. .| ++++|...|++..
T Consensus 270 A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 270 MMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 99999999864 58999999999998 55 8888988888753
No 190
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.17 E-value=1.1e-10 Score=99.71 Aligned_cols=145 Identities=15% Similarity=0.096 Sum_probs=88.3
Q ss_pred HHHHHHHhhhcCcccccCCCChhhHHhhhcccCC-CCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199 9 EVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGG-RGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFL 87 (197)
Q Consensus 9 ~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 87 (197)
.+++.+|+..|..+.+. +++..++..|..+.. .| ..+++++|+++|+++++. .++.++
T Consensus 56 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g-----------------~~~~~~~A~~~~~~a~~~--~~~~a~ 114 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEG-----------------VPQDYAQAVIWYKKAALK--GLPQAQ 114 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS-----------------SCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC-----------------CCCCHHHHHHHHHHHHHC--CCHHHH
Confidence 44566666666665543 556666665554322 11 026677777777777654 466677
Q ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199 88 SNYAQFLYQS---KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWE----LHNDQDRAATYYERAVHASPEDSHVHASY 160 (197)
Q Consensus 88 ~~la~~l~~~---~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~l 160 (197)
++||.++..- .+++++|+.+|+++.+. .++.+++++|.+|.. .+ ++++|+++|+++++. .++.+++++
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~a~~~--~~~~a~~~L 189 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTR-DYVMAREWYSKAAEQ--GNVWSCNQL 189 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 7777443321 35677777777776553 466777777766655 23 467777777777664 456777777
Q ss_pred HHHHHH----cCCccccccCCCc
Q 029199 161 AGFLWE----TEEDNDECDAPSE 179 (197)
Q Consensus 161 a~~~~~----~g~~~ea~~~~~~ 179 (197)
|.++.. .+++++|...|++
T Consensus 190 g~~y~~g~g~~~~~~~A~~~~~~ 212 (490)
T 2xm6_A 190 GYMYSRGLGVERNDAISAQWYRK 212 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHhcCCCCCcCHHHHHHHHHH
Confidence 777766 6666666666655
No 191
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.17 E-value=1.6e-10 Score=82.88 Aligned_cols=108 Identities=17% Similarity=0.143 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWE---LHNDQDRAA 140 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~---~~~~~~~A~ 140 (197)
+++++|+++|+++.+..+..+. +|.++.. .+..++|+.+|+++.+. .++.+++++|.+|.. ..+++++|+
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~-g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNS-QINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCT-TSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHc-CCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 6889999999999998754444 8866555 78899999999999986 789999999999887 133699999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH----cCCccccccCCCcc
Q 029199 141 TYYERAVHASPEDSHVHASYAGFLWE----TEEDNDECDAPSEL 180 (197)
Q Consensus 141 ~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~ea~~~~~~~ 180 (197)
++|+++.+. .++.+++++|.+|.. .+++++|...|++.
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 999999986 689999999999999 88999998888875
No 192
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.14 E-value=3.7e-10 Score=75.82 Aligned_cols=73 Identities=15% Similarity=0.084 Sum_probs=66.8
Q ss_pred CCCCHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 029199 80 NPGNPLFLSNYAQFLYQSKQD---LPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS 154 (197)
Q Consensus 80 ~P~~~~~~~~la~~l~~~~g~---~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~ 154 (197)
+|+++.++..+|.+++. .++ .++|...++++|+++|+++.+++.+|..+++.| ++++|+.+++++++.+|.++
T Consensus 2 ~p~~~~~~~~~a~al~~-~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g-~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYY-LHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISF-RFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHH-TTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCc
Confidence 79999999999999886 444 799999999999999999999999999999977 59999999999999999843
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.14 E-value=1.7e-09 Score=77.37 Aligned_cols=124 Identities=17% Similarity=0.093 Sum_probs=97.5
Q ss_pred HHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199 8 EEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFL 87 (197)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 87 (197)
....+.+|+..|.++.+.+ ++... .|..+.. .+..++|+++|+++.+. .++.++
T Consensus 7 ~~~d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~--------------------g~~~~~A~~~~~~Aa~~--g~~~a~ 60 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELN--EMFGC--LSLVSNS--------------------QINKQKLFQYLSKACEL--NSGNGC 60 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CTTHH--HHHHTCT--------------------TSCHHHHHHHHHHHHHT--TCHHHH
T ss_pred CccCHHHHHHHHHHHHcCC--CHhhh--HHHHHHc--------------------CCCHHHHHHHHHHHHcC--CCHHHH
Confidence 3567889999998877665 44333 5555443 36788899999999987 789999
Q ss_pred HHHHHHHHH---hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199 88 SNYAQFLYQ---SKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWE----LHNDQDRAATYYERAVHASPEDSHVHASY 160 (197)
Q Consensus 88 ~~la~~l~~---~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~l 160 (197)
++||.++.. ..+++++|+.+|+++.+. .++.+++++|.+|.. .+ ++++|+.+|+++.+. .++.+..++
T Consensus 61 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~-d~~~A~~~~~~Aa~~--g~~~A~~~l 135 (138)
T 1klx_A 61 RFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVK-NEKQAVKTFEKACRL--GSEDACGIL 135 (138)
T ss_dssp HHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TCHHHHHHC
T ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCc-CHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 999965553 157999999999999986 789999999999887 44 699999999999987 467777766
Q ss_pred HH
Q 029199 161 AG 162 (197)
Q Consensus 161 a~ 162 (197)
+.
T Consensus 136 ~~ 137 (138)
T 1klx_A 136 NN 137 (138)
T ss_dssp --
T ss_pred hh
Confidence 54
No 194
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.13 E-value=7.8e-11 Score=96.44 Aligned_cols=156 Identities=13% Similarity=-0.001 Sum_probs=117.9
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhh------HHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEM------YLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKM 76 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 76 (197)
|.++...|++.+|+..+..+.+..|..... ++..|..... .|++++|+.+|+++
T Consensus 60 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~--------------------~G~~~~A~~~~~~a 119 (373)
T 1hz4_A 60 GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA--------------------QGFLQTAWETQEKA 119 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHH
Confidence 455667788888888888877665543222 3444544443 49999999999999
Q ss_pred HHhC--------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199 77 VEEN--------PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG-----DGEILSQYAKLVWELHNDQDRAATYY 143 (197)
Q Consensus 77 l~~~--------P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~-----~~~~~~~lg~~l~~~~~~~~~A~~~~ 143 (197)
+++. |....++.++|.+++. .|++++|+.++++++++.|. ...++.++|.++...|+ +++|..++
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~l 197 (373)
T 1hz4_A 120 FQLINEQHLEQLPMHEFLVRIRAQLLWA-WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD-LDNARSQL 197 (373)
T ss_dssp HHHHHHTTCTTSTHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTC-HHHHHHHH
T ss_pred HHHHHHhccccCcHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 9875 4456678889988887 99999999999999999875 35678899999999885 99999999
Q ss_pred HHHHHhCC--CCHHHHH-----HHHHHHHHcCCccccccCCCcc
Q 029199 144 ERAVHASP--EDSHVHA-----SYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 144 ~~al~~~p--~~~~~~~-----~la~~~~~~g~~~ea~~~~~~~ 180 (197)
++++++.+ ..+..+. .++.++...|++++|...+++.
T Consensus 198 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 241 (373)
T 1hz4_A 198 NRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 241 (373)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 99998742 2322222 3445688999999997776664
No 195
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.12 E-value=1.1e-09 Score=79.76 Aligned_cols=102 Identities=12% Similarity=0.093 Sum_probs=91.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQ---DLPKAEEYYSRAILAD-P-GDGEILSQYAKLVWELHNDQDR 138 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g---~~~~A~~~~~~al~l~-P-~~~~~~~~lg~~l~~~~~~~~~ 138 (197)
.....+.+.|++.++.+|.+..+.+++|.++.. .+ +.++++..++..++.+ | ++.+.+|++|..+++++ ++++
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~-S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~-~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK-EYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTS-CHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHcc-CHHH
Confidence 567788999999999999999999999977776 77 6679999999999999 7 67999999999999988 5999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 029199 139 AATYYERAVHASPEDSHVHASYAGFLWET 167 (197)
Q Consensus 139 A~~~~~~al~~~p~~~~~~~~la~~~~~~ 167 (197)
|+++++++|+++|+|..+..-.-.+-.+.
T Consensus 90 A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~ 118 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKELERLIDKAM 118 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988777666554
No 196
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=9.5e-11 Score=95.21 Aligned_cols=151 Identities=13% Similarity=-0.009 Sum_probs=110.7
Q ss_pred CcchhHHHHHHHHhhhcCcccccCC--CChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGT--VGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN 80 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 80 (197)
|+++-.+|++.+|+..+..+++.+| ++.+++....-.+.. .|+.+.|.+.+++..+.+
T Consensus 107 a~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~--------------------~~r~d~A~k~l~~~~~~~ 166 (310)
T 3mv2_B 107 ATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL--------------------NNNVSTASTIFDNYTNAI 166 (310)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHhcC
Confidence 5677788888899988888877776 666666555544444 488999999999998888
Q ss_pred CC----CHHHHHHHHHH--HHHhcC--CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 029199 81 PG----NPLFLSNYAQF--LYQSKQ--DLPKAEEYYSRAILADPG--DGEILSQYAKLVWELHNDQDRAATYYERAVHA- 149 (197)
Q Consensus 81 P~----~~~~~~~la~~--l~~~~g--~~~~A~~~~~~al~l~P~--~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~- 149 (197)
|+ +-.++.+++.. ... .| ++.+|...|+++.+..|+ ++..+++ ++..+|+ +++|...++++++.
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~-~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~-~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFA-TNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRN-IAEAQGIVELLLSDY 241 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-HTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTC-HHHHHHHHHHHHSHH
T ss_pred ccccccchHHHHHHHHHHHHHH-hCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCC-HHHHHHHHHHHHHhc
Confidence 83 22333444422 333 44 899999999998887776 4555555 6777785 89999999877776
Q ss_pred ---------CCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 150 ---------SPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 150 ---------~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+|+|+.++.|++.+...+|+ ++.+.++++
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL 279 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQL 279 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 48899999999888888887 665666554
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.04 E-value=1.7e-10 Score=99.49 Aligned_cols=117 Identities=15% Similarity=0.070 Sum_probs=98.2
Q ss_pred CCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHH
Q 029199 62 SGGDSQGVEEYYKKMVEE-----NPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILA-----DPGDG---EILSQY 125 (197)
Q Consensus 62 ~~g~~~~A~~~~~~al~~-----~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l-----~P~~~---~~~~~l 125 (197)
..|++++|+..|++++++ .|++ ...+.+||.++.. +|++++|+.+++++|++ -|++| ..++|+
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~-~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY-LQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 469999999999999986 3555 4568899977777 99999999999999987 35555 568899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHcCCccccccCCCcc
Q 029199 126 AKLVWELHNDQDRAATYYERAVHA-----SPEDSHV---HASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 126 g~~l~~~~~~~~~A~~~~~~al~~-----~p~~~~~---~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
|.+|..+|+ +++|+.+|++|+++ -|++|.+ ..+++.++.+++++++|+..|+++
T Consensus 400 a~~~~~~G~-~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 400 GLTNWHAGH-IEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCC-HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999885 99999999999986 3777765 568899999999999998777764
No 198
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.99 E-value=8e-09 Score=70.32 Aligned_cols=81 Identities=15% Similarity=0.184 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD-------PGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSH 155 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~-------P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~ 155 (197)
++.-.+.+|..++. .+++..|+.+|++|++.. +..+.++.++|.+++++| ++++|+.+++++++++|+++.
T Consensus 4 sa~dc~~lG~~~~~-~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g-~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYT-EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG-DLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHH
T ss_pred CHHHHHHHHHHHHH-ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHH
Confidence 35567789988888 999999999999999873 456889999999999988 499999999999999999999
Q ss_pred HHHHHHHHHH
Q 029199 156 VHASYAGFLW 165 (197)
Q Consensus 156 ~~~~la~~~~ 165 (197)
+..+++.+-.
T Consensus 82 ~~~n~~~~~~ 91 (104)
T 2v5f_A 82 ANGNLKYFEY 91 (104)
T ss_dssp HHHHHHHHHH
T ss_pred HHhhHHHHHH
Confidence 9999984443
No 199
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.97 E-value=2.3e-09 Score=71.89 Aligned_cols=77 Identities=13% Similarity=0.014 Sum_probs=66.9
Q ss_pred CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 029199 26 GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAE 105 (197)
Q Consensus 26 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~ 105 (197)
+|.+++++...|..+...++ ....++|.+.++++++++|+++.+++.+|..++. .|++++|+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~-----------------~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g~y~~Ai 63 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHK-----------------QAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-SFRFQEAI 63 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTT-----------------TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcC-----------------CCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cCCHHHHH
Confidence 68999999999988744321 1346899999999999999999999999988887 99999999
Q ss_pred HHHHHHHHhCCCCHH
Q 029199 106 EYYSRAILADPGDGE 120 (197)
Q Consensus 106 ~~~~~al~l~P~~~~ 120 (197)
.+|+++++.+|.++.
T Consensus 64 ~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 64 DTWVLLLDSNDPNLD 78 (93)
T ss_dssp HHHHHHHTCCCTTCC
T ss_pred HHHHHHHhhCCCCcc
Confidence 999999999998654
No 200
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.95 E-value=1.1e-09 Score=88.88 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=92.6
Q ss_pred CCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----C-HHHHHHHHHHHHHHc-
Q 029199 63 GGDSQGVEEYYKKMVEENP--GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPG-----D-GEILSQYAKLVWELH- 133 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P--~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~-----~-~~~~~~lg~~l~~~~- 133 (197)
.|++++|++.+++.+..+| ++.+++..++.++.. +|+.+.|.+.+++..+.+|+ + ..+...-+++....|
T Consensus 113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~-~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~ 191 (310)
T 3mv2_B 113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL-NNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNK 191 (310)
T ss_dssp HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCC
Confidence 4999999999999999997 888899888888887 99999999999999999993 3 333333355565555
Q ss_pred CCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 134 NDQDRAATYYERAVHASPE--DSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 134 ~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+++++|...|+++....|+ .+..+++ ++.++|++++|+..++.+
T Consensus 192 ~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 192 ETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp STTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHH
Confidence 2489999999999888886 4556666 899999999998888754
No 201
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.91 E-value=4.4e-09 Score=87.09 Aligned_cols=114 Identities=10% Similarity=-0.043 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--cC--C---HHHHHHHHHH--HHHhCCCCHHHHHHHHHHHHHHcC
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQS--KQ--D---LPKAEEYYSR--AILADPGDGEILSQYAKLVWELHN 134 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~--~g--~---~~~A~~~~~~--al~l~P~~~~~~~~lg~~l~~~~~ 134 (197)
.++.+|+.+|+++++++|+++.+|..++.++... .+ . .......++. ++..+|.++.++..++..+...|
T Consensus 213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~g- 291 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKG- 291 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCC-
Confidence 5678999999999999999999999887554321 11 1 1111112222 33668999999999998887767
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 135 DQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 135 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
++++|+.++++|+.++|+ ...|..+|.++...|++++|.+.|++
T Consensus 292 d~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~ 335 (372)
T 3ly7_A 292 KTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLT 335 (372)
T ss_dssp CHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 599999999999999975 78889999999999999999999988
No 202
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.90 E-value=1.6e-09 Score=91.85 Aligned_cols=157 Identities=5% Similarity=-0.109 Sum_probs=58.5
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCC--------CCCCCCCCCcccCCCCCHHHHHHHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGG--------GTGGGGSGFYPAGSGGDSQGVEEYYK 74 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~A~~~~~ 74 (197)
|.++...|++++|+.-+....+.. .++.+....+..+.++|.... ...++...|-.|...|.+++|..+|.
T Consensus 68 ~~~ae~~g~~EeAi~yl~~ark~~-~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 68 VQAANTSGNWEELVKYLQMARKKA-RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp ------------------------------------------CHHHHTTTTTCC----------------CTTTHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445556677777777666665532 224555555555566655211 11245566777777888888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 029199 75 KMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDS 154 (197)
Q Consensus 75 ~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~ 154 (197)
++ ..|..+|.++.. +|++++|+++|+++ +++.+|.....++...| +++.|..+..+ +...|+
T Consensus 147 ~a--------~n~~~LA~~L~~-Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~-ef~lA~~~~l~-L~~~ad-- 208 (449)
T 1b89_A 147 NV--------SNFGRLASTLVH-LGEYQAAVDGARKA-----NSTRTWKEVCFACVDGK-EFRLAQMCGLH-IVVHAD-- 208 (449)
T ss_dssp HT--------TCHHHHHHHHHT-TTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTT-CHHHHHHTTTT-TTTCHH--
T ss_pred Hh--------hhHHHHHHHHHH-hccHHHHHHHHHHc-----CCchhHHHHHHHHHHcC-cHHHHHHHHHH-HHhCHh--
Confidence 76 357778877776 88888888888888 36666666555555544 24555444443 112222
Q ss_pred HHHHHHHHHHHHcCCccccccCCCc
Q 029199 155 HVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 155 ~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
-...+..+|.+.|+++++...++.
T Consensus 209 -~l~~lv~~Yek~G~~eEai~lLe~ 232 (449)
T 1b89_A 209 -ELEELINYYQDRGYFEELITMLEA 232 (449)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -hHHHHHHHHHHCCCHHHHHHHHHH
Confidence 222344445555555555444443
No 203
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.88 E-value=9.4e-09 Score=87.28 Aligned_cols=94 Identities=13% Similarity=0.072 Sum_probs=78.9
Q ss_pred CCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEE-----NPGNP---LFLSNYAQFLYQSKQDLPKAEEYYSRAILA-----DPGDG---EILSQYA 126 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~-----~P~~~---~~~~~la~~l~~~~g~~~~A~~~~~~al~l-----~P~~~---~~~~~lg 126 (197)
.|++++|+..|++++++ .|+++ ..+.++|.++.. +|++++|+.+|+++|++ -|++| ..++|+|
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~-~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY-MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 48999999999999985 46665 467899978777 99999999999999977 35555 5688999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHH
Q 029199 127 KLVWELHNDQDRAATYYERAVHAS-----PEDSHVHA 158 (197)
Q Consensus 127 ~~l~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~ 158 (197)
.+|..+|+ +++|+.+|++|+++. |++|.+..
T Consensus 390 ~~~~~qg~-~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLEN-KAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccC-HHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 99999885 999999999999874 88887643
No 204
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.86 E-value=8.3e-09 Score=97.34 Aligned_cols=142 Identities=11% Similarity=0.049 Sum_probs=84.7
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG 82 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 82 (197)
|.++.++|++++||..|-+ .+++..|...|-.+.. .|++++|+++|+.+.+..++
T Consensus 1112 AKAql~~G~~kEAIdsYiK-----AdD~say~eVa~~~~~--------------------lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A 1112 AKAQLQKGMVKEAIDSYIK-----ADDPSSYMEVVQAANT--------------------SGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHh-----cCChHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhhccc
Confidence 4556666777777777633 2566666665555555 47777777777666654422
Q ss_pred ---------------------------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 029199 83 ---------------------------NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHND 135 (197)
Q Consensus 83 ---------------------------~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~ 135 (197)
+...+.++|..++. .|++++|..+|.++ ..|..++.+|.++|+
T Consensus 1167 ~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~-eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge- 1236 (1630)
T 1xi4_A 1167 SYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYD-EKMYDAAKLLYNNV--------SNFGRLASTLVHLGE- 1236 (1630)
T ss_pred ccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHh-cCCHHHHHHHHHhh--------hHHHHHHHHHHHhCC-
Confidence 22334456655555 66677777766665 356666666666663
Q ss_pred HHHHHHHHHHHHHhCC-------------------------CCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 136 QDRAATYYERAVHASP-------------------------EDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 136 ~~~A~~~~~~al~~~p-------------------------~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
+++|++++++|....+ .+++.+..++..|...|.++++...++.
T Consensus 1237 ~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1237 YQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6777777766633222 1333444555666666666666666654
No 205
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.83 E-value=2.1e-08 Score=83.03 Aligned_cols=132 Identities=11% Similarity=-0.107 Sum_probs=97.7
Q ss_pred HHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHH--HHHHhCCCCHHHH
Q 029199 10 VKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYK--KMVEENPGNPLFL 87 (197)
Q Consensus 10 ~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~--~al~~~P~~~~~~ 87 (197)
....+|+..|..+++.+|+.+..+...+++........ |. ...........++ .++..+|.++.++
T Consensus 213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~-----~~-------~~~~~~~l~~a~~a~~a~~~~~~~a~~~ 280 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQH-----PL-------DEKQLAALNTEIDNIVTLPELNNLSIIY 280 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHS-----CC-------CHHHHHHHHHHHHHHHTCGGGTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccC-----CC-------chhhHHHHHHHHHHHHhcccCCcCHHHH
Confidence 44689999999999999999999887777643210000 00 0011111112222 2336789999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 029199 88 SNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHV 156 (197)
Q Consensus 88 ~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~ 156 (197)
..++..+.. .|++++|+..+++|+.++| +..++..+|.++...|+ +++|++.|++|++++|..+..
T Consensus 281 ~alal~~l~-~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~-~~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 281 QIKAVSALV-KGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGM-NREAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp HHHHHHHHH-HTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSCSHHHH
T ss_pred HHHHHHHHh-CCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCcChH
Confidence 999966665 7999999999999999997 47788899999888774 999999999999999987643
No 206
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.79 E-value=3.8e-09 Score=94.34 Aligned_cols=117 Identities=13% Similarity=0.151 Sum_probs=100.2
Q ss_pred CCCHHHHHHHHHHHHHh-----------CCC-----------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCH
Q 029199 63 GGDSQGVEEYYKKMVEE-----------NPG-----------NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA-DPGDG 119 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~-----------~P~-----------~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l-~P~~~ 119 (197)
.|++++|.+.|++++.. .|. ...+|..++.+..+ .|..+.|+..|.+|++. .+...
T Consensus 391 ~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR-~~~l~~AR~vf~~A~~~~~~~~~ 469 (679)
T 4e6h_A 391 NTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR-IQGLAASRKIFGKCRRLKKLVTP 469 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHTGGGSCT
T ss_pred hCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCCCh
Confidence 48899999999999975 253 45689999977776 88999999999999987 55567
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 120 EILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 120 ~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.++...+.+.+..+++.+.|...|+++++..|+++..|..++.+....|+.+.+...|++.
T Consensus 470 ~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lfera 530 (679)
T 4e6h_A 470 DIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESS 530 (679)
T ss_dssp HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 7888888777777766899999999999999999999999999999999999998888884
No 207
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.75 E-value=1.6e-08 Score=81.00 Aligned_cols=102 Identities=15% Similarity=0.049 Sum_probs=82.7
Q ss_pred hCCCCHHHHHHHHHHHHHh----cC------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHH----cCCHHHHHHH
Q 029199 79 ENPGNPLFLSNYAQFLYQS----KQ------DLPKAEEYYSRAILADPG--DGEILSQYAKLVWEL----HNDQDRAATY 142 (197)
Q Consensus 79 ~~P~~~~~~~~la~~l~~~----~g------~~~~A~~~~~~al~l~P~--~~~~~~~lg~~l~~~----~~~~~~A~~~ 142 (197)
.+|+++++++=.|...... .| ...+|...+++++++||+ +..+|..+|.+|... +++.++|.++
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 3566777666555333221 12 468899999999999999 788999999998885 4579999999
Q ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHc-CCccccccCCCcc
Q 029199 143 YERAVHASPED-SHVHASYAGFLWET-EEDNDECDAPSEL 180 (197)
Q Consensus 143 ~~~al~~~p~~-~~~~~~la~~~~~~-g~~~ea~~~~~~~ 180 (197)
|++||+++|+. ..+++.+|..+... |+++++...+++.
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999975 99999999999885 9999998888774
No 208
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.74 E-value=4.9e-09 Score=87.06 Aligned_cols=171 Identities=9% Similarity=-0.057 Sum_probs=117.6
Q ss_pred chhHHHHHHHHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCH
Q 029199 5 ALSEEVKVMEALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNP 84 (197)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~ 84 (197)
.+-+.|++.+|+..|...++..|.........+.......... ..-...+..+...|++++|+++|+++++..+...
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQE---TSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHH---HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 3556788999999999998888876554332222100000000 0000001122335999999999999998766543
Q ss_pred H------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 029199 85 L------FLSNYAQFLYQSKQDLPKAEEYYSRAILADP------GDGEILSQYAKLVWELHNDQDRAATYYERAVHA--- 149 (197)
Q Consensus 85 ~------~~~~la~~l~~~~g~~~~A~~~~~~al~l~P------~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~--- 149 (197)
. +...++.++.. .|++++|+..+++++...+ .-..++.++|.++...|+ +++|+.++++++..
T Consensus 90 ~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~l~~~~~~~~~ 167 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQV-PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQ-YKDSLALINDLLREFKK 167 (434)
T ss_dssp HHHHHHHHHHHHHHHCSC-CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccC-hHHHHHHHHHHHHHHHh
Confidence 2 44566744444 8899999999999987643 336788899999999885 99999999999876
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 150 ---SPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 150 ---~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.|....++...+.++..+|++++|...+++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 168 LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 2445678999999999999999998777663
No 209
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.72 E-value=9.1e-08 Score=90.41 Aligned_cols=102 Identities=15% Similarity=0.112 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------------------------
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD------------------------ 118 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~------------------------ 118 (197)
.|++++|+.+|.++ +++..|..++.++.. .|++++|+++|..|.+.+|+.
T Consensus 1118 ~G~~kEAIdsYiKA-----dD~say~eVa~~~~~-lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~ 1191 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA-----DDPSSYMEVVQAANT-SGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN 1191 (1630)
T ss_pred CCCHHHHHHHHHhc-----CChHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHh
Confidence 48888888888775 778888888877666 888888888887777665331
Q ss_pred ---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 119 ---GEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 119 ---~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
...+.++|..+...|+ +++|..+|.++ ..|..++.++.++|++++|++.+++
T Consensus 1192 ~~n~ad~~~iGd~le~eg~-YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKM-YDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCC-HHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2234445555555453 56666666654 2556666666666666666665555
No 210
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.71 E-value=1.2e-08 Score=84.68 Aligned_cols=155 Identities=10% Similarity=-0.095 Sum_probs=118.3
Q ss_pred CcchhHHHHHHHHhhhcCcccccCCCChhh------HHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHH
Q 029199 3 GTALSEEVKVMEALWNAGFEQERGTVGQEM------YLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKM 76 (197)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 76 (197)
|.+|.+.|++.+|+..+....+..+.-+.. ....|..... .|++++|+.+++++
T Consensus 62 ~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~a~~~~~~~ 121 (434)
T 4b4t_Q 62 GQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQV--------------------PDSLDDQIFVCEKS 121 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSC--------------------CSCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhC--------------------CCCHHHHHHHHHHH
Confidence 456788888899988887776654443222 1122332222 48999999999999
Q ss_pred HHhCC------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 029199 77 VEENP------GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA------DPGDGEILSQYAKLVWELHNDQDRAATYYE 144 (197)
Q Consensus 77 l~~~P------~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l------~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~ 144 (197)
+...+ ....++.++|.++.. .|++++|+..+++++.. .|....++.++|.++..++ ++++|..+|+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~ 199 (434)
T 4b4t_Q 122 IEFAKREKRVFLKHSLSIKLATLHYQ-KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLR-NLAKSKASLT 199 (434)
T ss_dssp HHHHHHSSCCSSHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHH-ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhC-cHHHHHHHHH
Confidence 87643 336788999988887 99999999999999876 3455689999999999988 5999999999
Q ss_pred HHHHhC---CCC----HHHHHHHHHHHHHcCCccccccCCCc
Q 029199 145 RAVHAS---PED----SHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 145 ~al~~~---p~~----~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
+++.+. ++. ...+..+|.++...|++++|...|..
T Consensus 200 ~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 200 AARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999874 333 24577888899999999999766655
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.69 E-value=5.9e-08 Score=70.63 Aligned_cols=97 Identities=10% Similarity=0.052 Sum_probs=78.9
Q ss_pred HHhhhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC-C-CCHHHHHHHH
Q 029199 14 EALWNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN-P-GNPLFLSNYA 91 (197)
Q Consensus 14 ~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P-~~~~~~~~la 91 (197)
.+-..|......+|.+++..|..|+++-.... .++..+++..++++++.+ | +..+.++++|
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~-----------------~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LA 78 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKY-----------------NDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 78 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSS-----------------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCC-----------------HHHHHHHHHHHHHHHhcCCccchHHHHHHHH
Confidence 33344444445678899999999999866311 237789999999999999 7 6789999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 92 QFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKL 128 (197)
Q Consensus 92 ~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~ 128 (197)
..+++ .+++++|+++++++|+++|+|..+....-.+
T Consensus 79 v~~~k-l~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 79 VGNYR-LKEYEKALKYVRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHH-TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHH-ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 88877 9999999999999999999999998776544
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.68 E-value=6.9e-08 Score=81.85 Aligned_cols=103 Identities=13% Similarity=-0.056 Sum_probs=82.8
Q ss_pred CCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEE-----NPGNP---LFLSNYAQFLYQSKQDLPKAEEYYSRAILA-----DPGDG---EILSQYA 126 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~-----~P~~~---~~~~~la~~l~~~~g~~~~A~~~~~~al~l-----~P~~~---~~~~~lg 126 (197)
.|++++|+..|++++++ .|+++ ..+.++|.++.. +|++++|+.+++++|++ -|++| ..++++|
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~-~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN-LGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 58999999999999975 35554 567889977777 99999999999999977 35555 5688999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHHc
Q 029199 127 KLVWELHNDQDRAATYYERAVHA-----SPEDSHVH---ASYAGFLWET 167 (197)
Q Consensus 127 ~~l~~~~~~~~~A~~~~~~al~~-----~p~~~~~~---~~la~~~~~~ 167 (197)
.+|..+|+ +++|+.+|++|+++ -|++|.+. .+++.+..++
T Consensus 379 ~~~~~~g~-~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 379 KLQLHQGM-FPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCC-HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 99999885 99999999999987 38887654 5566665543
No 213
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.64 E-value=2e-07 Score=63.21 Aligned_cols=65 Identities=17% Similarity=0.151 Sum_probs=58.6
Q ss_pred CCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEEN-------PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKL 128 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~-------P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~ 128 (197)
.|++..|+..|++|++.. +..+.++.+||.+++. +|++++|+..++++++++|+++.+..|++.+
T Consensus 18 ~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~n~~~~ 89 (104)
T 2v5f_A 18 EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRANGNLKYF 89 (104)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHHHHhhHHHH
Confidence 599999999999999874 3568899999988887 9999999999999999999999999999843
No 214
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.56 E-value=2.3e-07 Score=78.73 Aligned_cols=108 Identities=9% Similarity=-0.008 Sum_probs=89.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 029199 61 GSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAA 140 (197)
Q Consensus 61 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~ 140 (197)
...|++++|+++|+++ +++..|......+.. .|+++.|..+..+ +..+|++ ...+..+|...|+ +++|+
T Consensus 159 ~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~-~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~-~eEai 227 (449)
T 1b89_A 159 VHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD-GKEFRLAQMCGLH-IVVHADE---LEELINYYQDRGY-FEELI 227 (449)
T ss_dssp HTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH-TTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTC-HHHHH
T ss_pred HHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH-cCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCC-HHHHH
Confidence 4469999999999999 588999998878887 9999999888876 3355555 4467777888775 99999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHc--CCccccccCCCc
Q 029199 141 TYYERAVHASPEDSHVHASYAGFLWET--EEDNDECDAPSE 179 (197)
Q Consensus 141 ~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~ea~~~~~~ 179 (197)
.++++++.+++.+..++..+|.++.+- ++..|.++.|..
T Consensus 228 ~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~ 268 (449)
T 1b89_A 228 TMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS 268 (449)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999999875 466677766665
No 215
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.52 E-value=2.8e-07 Score=82.31 Aligned_cols=141 Identities=10% Similarity=0.085 Sum_probs=103.2
Q ss_pred hcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199 18 NAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVE-EYYKKMVEENPGNPLFLSNYAQFLYQ 96 (197)
Q Consensus 18 ~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~-~~~~~al~~~P~~~~~~~~la~~l~~ 96 (197)
.|..++...|..+.+|+..+--+... |+.++|. +.|++++...|.+...|..++.+...
T Consensus 331 ~Ye~aL~~~p~~~~lW~~ya~~~~~~--------------------~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~ 390 (679)
T 4e6h_A 331 VYMQAAQHVCFAPEIWFNMANYQGEK--------------------NTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYEL 390 (679)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHH--------------------SCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhc--------------------CcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34444555777888888776554442 5556786 88888888888888888888866555
Q ss_pred hcCCHHHHHHHHHHHHHh-----------CCC-----------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Q 029199 97 SKQDLPKAEEYYSRAILA-----------DPG-----------DGEILSQYAKLVWELHNDQDRAATYYERAVHA-SPED 153 (197)
Q Consensus 97 ~~g~~~~A~~~~~~al~l-----------~P~-----------~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~-~p~~ 153 (197)
.|++++|...|++++.. .|. .+.+|..++.+....++ .+.|...|.+|++. .+..
T Consensus 391 -~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~-l~~AR~vf~~A~~~~~~~~ 468 (679)
T 4e6h_A 391 -NTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG-LAASRKIFGKCRRLKKLVT 468 (679)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHTGGGSC
T ss_pred -hCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCCCC
Confidence 88888898888888874 253 34578888888777775 88888899998887 4455
Q ss_pred HHHHHHHHHHHHHcCC-ccccccCCCcc
Q 029199 154 SHVHASYAGFLWETEE-DNDECDAPSEL 180 (197)
Q Consensus 154 ~~~~~~la~~~~~~g~-~~ea~~~~~~~ 180 (197)
+.+|...+.+-.+.++ .+.|...|+..
T Consensus 469 ~~lyi~~A~lE~~~~~d~e~Ar~ife~~ 496 (679)
T 4e6h_A 469 PDIYLENAYIEYHISKDTKTACKVLELG 496 (679)
T ss_dssp THHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 6777777777777654 67777776663
No 216
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.51 E-value=2.1e-07 Score=80.13 Aligned_cols=83 Identities=11% Similarity=0.061 Sum_probs=71.8
Q ss_pred hcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHHH
Q 029199 97 SKQDLPKAEEYYSRAILA-----DPGDG---EILSQYAKLVWELHNDQDRAATYYERAVHAS-----PEDSH---VHASY 160 (197)
Q Consensus 97 ~~g~~~~A~~~~~~al~l-----~P~~~---~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~-----p~~~~---~~~~l 160 (197)
.+|++++|+..|+++|++ .|++| .++.++|.+|..+|+ +++|+.+++++|++. |++|. .+.++
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~-~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQA-YEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 489999999999999987 35555 578899999999885 999999999999873 66765 48899
Q ss_pred HHHHHHcCCccccccCCCcc
Q 029199 161 AGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 161 a~~~~~~g~~~ea~~~~~~~ 180 (197)
|.+|..+|++++|+..+++.
T Consensus 400 a~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999888874
No 217
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.50 E-value=2.1e-06 Score=60.36 Aligned_cols=99 Identities=10% Similarity=0.047 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHHH
Q 029199 65 DSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPK---AEEYYSRAILAD-P-GDGEILSQYAKLVWELHNDQDRA 139 (197)
Q Consensus 65 ~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~---A~~~~~~al~l~-P-~~~~~~~~lg~~l~~~~~~~~~A 139 (197)
....+.+.|++.+..++....+-+++|..+.. ..+... ++.+++..++.+ | ..-+.++.+|..++++| +|++|
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~-S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg-~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK-EYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT-SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT-CHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh-hHHHH
Confidence 34677888999999999999999999977776 776655 999999999887 5 67789999999999988 59999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH
Q 029199 140 ATYYERAVHASPEDSHVHASYAGFLW 165 (197)
Q Consensus 140 ~~~~~~al~~~p~~~~~~~~la~~~~ 165 (197)
+.+++..|++.|+|..+..-...+-.
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk~~i~~ 119 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELERLIDK 119 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999998766655543
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.49 E-value=1.3e-07 Score=80.18 Aligned_cols=82 Identities=7% Similarity=0.020 Sum_probs=70.9
Q ss_pred cCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHHHH
Q 029199 98 KQDLPKAEEYYSRAILA-----DPGDG---EILSQYAKLVWELHNDQDRAATYYERAVHAS-----PEDSH---VHASYA 161 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~l-----~P~~~---~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~-----p~~~~---~~~~la 161 (197)
.|++++|+..|+++|++ .|++| ..+.++|.+|..+|+ +++|+.+++++|++. |++|. .+.++|
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~-~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD-WEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 57899999999999985 56666 457899999999885 999999999999873 66665 488999
Q ss_pred HHHHHcCCccccccCCCcc
Q 029199 162 GFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 162 ~~~~~~g~~~ea~~~~~~~ 180 (197)
.+|..+|++++|+..+++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHH
Confidence 9999999999999888874
No 219
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.43 E-value=1.4e-06 Score=74.98 Aligned_cols=141 Identities=9% Similarity=0.129 Sum_probs=111.6
Q ss_pred hhcCcccccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---
Q 029199 17 WNAGFEQERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQF--- 93 (197)
Q Consensus 17 ~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~--- 93 (197)
..|..++...|..+.+|+..+--+.. .|+.++|...|++++.. |.+...|..++.+
T Consensus 200 ~~ye~al~~~p~~~~lW~~ya~~~~~--------------------~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~ 258 (493)
T 2uy1_A 200 FIHNYILDSFYYAEEVYFFYSEYLIG--------------------IGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDE 258 (493)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcch
Confidence 34444555668888888887655444 38899999999999999 9987766655532
Q ss_pred -------------------------------------HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 029199 94 -------------------------------------LYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQ 136 (197)
Q Consensus 94 -------------------------------------l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~ 136 (197)
... .+..+.|...|++| +..+....+|...+.+.+..+++.
T Consensus 259 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r-~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~ 336 (493)
T 2uy1_A 259 EAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK-KRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSR 336 (493)
T ss_dssp THHHHHHHHHTC----------CHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred hHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH-cCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCCh
Confidence 122 45688899999999 544446778888888888778678
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 137 DRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 137 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
+.|...|+++++..|+++..|..++......|+.+.+...|+++
T Consensus 337 ~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 337 ATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988888775
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.31 E-value=7.6e-07 Score=75.40 Aligned_cols=86 Identities=8% Similarity=-0.093 Sum_probs=72.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---H
Q 029199 93 FLYQSKQDLPKAEEYYSRAILA-----DPGDG---EILSQYAKLVWELHNDQDRAATYYERAVHAS-----PEDSH---V 156 (197)
Q Consensus 93 ~l~~~~g~~~~A~~~~~~al~l-----~P~~~---~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~-----p~~~~---~ 156 (197)
-+.. +|++++|+..|++++++ .|+++ .++.++|.+|..+|+ +++|+.+++++|.+. |++|. .
T Consensus 296 ~~~~-~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~-~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 296 ELKA-HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL-LEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHH-TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHh-hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3445 89999999999999976 46665 568889999999885 999999999999773 66765 4
Q ss_pred HHHHHHHHHHcCCccccccCCCcc
Q 029199 157 HASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 157 ~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
++++|.+|..+|++++|+..+++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 889999999999999998888774
No 221
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.94 E-value=9.6e-05 Score=63.48 Aligned_cols=110 Identities=11% Similarity=0.008 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-----------------
Q 029199 66 SQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKL----------------- 128 (197)
Q Consensus 66 ~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~----------------- 128 (197)
.+.....|++++...|..+.+|..++.++.. .|+.++|...|++|+.. |.+...|..++..
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~-~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~ 272 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIG-IGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMG 272 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhh
Confidence 4567789999999999999999999988776 99999999999999999 9988777665543
Q ss_pred -----------------------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CccccccCCCc
Q 029199 129 -----------------------VWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETE-EDNDECDAPSE 179 (197)
Q Consensus 129 -----------------------l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~ea~~~~~~ 179 (197)
+...++ .+.|...|++| ...+....+|...+.+-...+ +.+.|...|+.
T Consensus 273 ~~~~~~~~~~~~~~~lw~~y~~~~~r~~~-~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 273 EAESAEKVFSKELDLLRINHLNYVLKKRG-LELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred ccchhhhhcccccHHHHHHHHHHHHHcCC-HHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 223454 78888899998 433345677777777776666 47777666665
No 222
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.92 E-value=7.2e-05 Score=64.44 Aligned_cols=162 Identities=15% Similarity=0.039 Sum_probs=113.0
Q ss_pred hhHHHHHHHHhhhcCcccccCCC-ChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC--CC
Q 029199 6 LSEEVKVMEALWNAGFEQERGTV-GQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN--PG 82 (197)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~ 82 (197)
+...|++.+|+..|+.+.+.+-. +...|.. -+ ..|+... ........++.++|.+.|++..... |
T Consensus 36 c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~-Li--~~c~~~~--------~~~~~~~~~~l~~A~~lf~~M~~~G~~P- 103 (501)
T 4g26_A 36 CSKKGDVLEALRLYDEARRNGVQLSQYHYNV-LL--YVCSLAE--------AATESSPNPGLSRGFDIFKQMIVDKVVP- 103 (501)
T ss_dssp TTTSCCHHHHHHHHHHHHHHTCCCCHHHHHH-HH--HHHTTCC--------CCSSSSCCHHHHHHHHHHHHHHHTTCCC-
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHhHHHH-HH--HHHHhCC--------chhhhhhcchHHHHHHHHHHHHHhCCCC-
Confidence 34567788888888877765321 2222211 11 1121100 0011122467899999999987753 5
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD-PGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS-PEDSHVHASY 160 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 160 (197)
|...|+.+-..+.+ .|+.++|++.|++..+.. +-|...+..+-..|.+.| +.++|.+.|+...+.. ..+...|..+
T Consensus 104 d~~tyn~lI~~~~~-~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g-~~~~A~~l~~~M~~~G~~Pd~~ty~~L 181 (501)
T 4g26_A 104 NEATFTNGARLAVA-KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG-DADKAYEVDAHMVESEVVPEEPELAAL 181 (501)
T ss_dssp CHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCC-CHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 55566767767776 899999999999988763 235666777777888877 5999999999998764 3368899999
Q ss_pred HHHHHHcCCccccccCCCccc
Q 029199 161 AGFLWETEEDNDECDAPSELD 181 (197)
Q Consensus 161 a~~~~~~g~~~ea~~~~~~~~ 181 (197)
-..+.+.|+.++|.+.++++-
T Consensus 182 i~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 182 LKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHH
Confidence 999999999999999998873
No 223
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.89 E-value=9.3e-05 Score=53.46 Aligned_cols=122 Identities=13% Similarity=0.070 Sum_probs=96.8
Q ss_pred cCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCH------HHHHHHHHHHHHhCCC--------CHHHHHHH
Q 029199 25 RGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDS------QGVEEYYKKMVEENPG--------NPLFLSNY 90 (197)
Q Consensus 25 ~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~A~~~~~~al~~~P~--------~~~~~~~l 90 (197)
..|+|++.|+.--.-+..- |+. ++-+..|++|+..-|- ....|..+
T Consensus 8 ~~p~~yd~W~~yl~llE~~--------------------g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrY 67 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKN--------------------SVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRF 67 (161)
T ss_dssp --CCSHHHHHHHHHHHHHH--------------------TCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHc--------------------CCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHH
Confidence 4788999888877666652 444 7888999999988765 35678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 029199 91 AQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEED 170 (197)
Q Consensus 91 a~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 170 (197)
+ .+.. .++.++|.+.|+.++.+....+-+|..+|.+....| +.++|.+.+.+|+...|...+. ...+..-.+.|+.
T Consensus 68 A-~~~e-i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqg-nl~kARkILg~AiG~~~k~~~~-le~a~~nl~~~~~ 143 (161)
T 4h7y_A 68 A-ELKA-IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQG-NVKKSKQLLQKAVERGAVPLEM-LEIALRNLNLQKK 143 (161)
T ss_dssp H-HHHH-HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTCBCHHH-HHHHHHHHHTTCS
T ss_pred H-HHHH-hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHhccCCCcHHH-HHHHHHhhhcCCC
Confidence 8 5455 799999999999999999889999999999999977 4999999999999999986554 4455555556654
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.88 E-value=3.3e-05 Score=55.82 Aligned_cols=99 Identities=22% Similarity=0.173 Sum_probs=84.4
Q ss_pred HhCCCCHHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199 78 EENPGNPLFLSNYAQFLYQSKQDL------PKAEEYYSRAILADPG--------DGEILSQYAKLVWELHNDQDRAATYY 143 (197)
Q Consensus 78 ~~~P~~~~~~~~la~~l~~~~g~~------~~A~~~~~~al~l~P~--------~~~~~~~lg~~l~~~~~~~~~A~~~~ 143 (197)
-+.|++++.|..+...+-. .|+. ++-++.|++|+..-|- ...+|..++.. ...+ |.++|.+.|
T Consensus 7 ~~~p~~yd~W~~yl~llE~-~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~-D~d~aR~vy 83 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEK-NSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQ-EPDDARDYF 83 (161)
T ss_dssp ---CCSHHHHHHHHHHHHH-HTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHH-CGGGCHHHH
T ss_pred eeCCCCHHHHHHHHHHHHH-cCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhc-CHHHHHHHH
Confidence 4689999999999966666 7998 8999999999998774 45778888855 5666 699999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 144 ERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 144 ~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
+.++.+....+.+|...|.+-.++|+...|...+++
T Consensus 84 ~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 84 QMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp HHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 999999888999999999999999999999888887
No 225
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.86 E-value=3.8e-05 Score=56.34 Aligned_cols=107 Identities=15% Similarity=0.173 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPL---------FLSNYAQFLYQSKQDLPKAEEYYSRAILAD---PGDGEILSQYAKLVWE 131 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~---------~~~~la~~l~~~~g~~~~A~~~~~~al~l~---P~~~~~~~~lg~~l~~ 131 (197)
|.|+.|+-....++.+..+++. ++..+|..++. .++|..|...|++||++. |+++......+. .
T Consensus 34 ~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~-~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~---~ 109 (167)
T 3ffl_A 34 GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH-DKEYRNAVSKYTMALQQKKALSKTSKVRPSTGN---S 109 (167)
T ss_dssp TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHCC----------------
T ss_pred hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHhcCCCccccccc---c
Confidence 5666666666665554333222 45556666666 666666666666665542 222221111110 0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcccccc
Q 029199 132 LHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSELDSNT 184 (197)
Q Consensus 132 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~~~~ 184 (197)
.. ... ... .+.+.++.|..+.|+.++|++++|+..++.+|.-.
T Consensus 110 -ss-~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 110 -AS-TPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp ----------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred -CC-Ccc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 00 000 011 13345778888888888888888888877776443
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.79 E-value=7e-05 Score=52.56 Aligned_cols=87 Identities=10% Similarity=0.087 Sum_probs=69.9
Q ss_pred ccCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhcCCH
Q 029199 24 ERGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEEN-P-GNPLFLSNYAQFLYQSKQDL 101 (197)
Q Consensus 24 ~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P-~~~~~~~~la~~l~~~~g~~ 101 (197)
..++.++...|..++++-.-.. ..+..+++..++..++.+ | ..-+.++.||..+++ .|+|
T Consensus 29 ~~~~~s~~~~F~yAw~Lv~S~~-----------------~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk-lg~Y 90 (126)
T 1nzn_A 29 AAGSVSKSTQFEYAWCLVRTRY-----------------NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEY 90 (126)
T ss_dssp HHSCCCHHHHHHHHHHHTTSSS-----------------HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-TTCH
T ss_pred ccCCCcHHHHHHHHHHHHcCCC-----------------HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH-hhhH
Confidence 3467788888888888765210 234566999999999987 5 567788999978887 9999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 102 PKAEEYYSRAILADPGDGEILSQYAKL 128 (197)
Q Consensus 102 ~~A~~~~~~al~l~P~~~~~~~~lg~~ 128 (197)
++|+.+++..|+.+|+|..+......+
T Consensus 91 ~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999998766544
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.79 E-value=8.9e-05 Score=54.38 Aligned_cols=89 Identities=9% Similarity=0.088 Sum_probs=53.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 029199 61 GSGGDSQGVEEYYKKMVEEN---PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQD 137 (197)
Q Consensus 61 ~~~g~~~~A~~~~~~al~~~---P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~ 137 (197)
...|+|.+|...|+++|+.. |..+.....++ . ...... ... .+.+.++.+.++.|+.++++ ++
T Consensus 74 f~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~----~-~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~-~~ 139 (167)
T 3ffl_A 74 FHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTG----N-SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQ-DK 139 (167)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHCC--------------------------------C-CCCHHHHHHHHHHHHHHTTC-HH
T ss_pred HcccHHHHHHHHHHHHHHHHHHHhcCCCcccccc----c-cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCC-HH
Confidence 44699999999999997753 33333221122 0 111111 112 25577899999999999996 89
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 029199 138 RAATYYERAVHASPEDSHVHASYAGFL 164 (197)
Q Consensus 138 ~A~~~~~~al~~~p~~~~~~~~la~~~ 164 (197)
+|+..++..-. .-..+.+-..+|..|
T Consensus 140 ~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 140 DAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred HHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 99998876522 234677888888765
No 228
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.78 E-value=0.0017 Score=46.36 Aligned_cols=100 Identities=12% Similarity=-0.034 Sum_probs=78.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQ---DLPKAEEYYSRAILADP-GDGEILSQYAKLVWELHNDQDRA 139 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g---~~~~A~~~~~~al~l~P-~~~~~~~~lg~~l~~~~~~~~~A 139 (197)
.++....+.|++-.. ++-.+..-+++|.++.. .. +..+++.+++..++.+| ..-+.++.+|..+++++ +|++|
T Consensus 20 eeL~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~-S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~-~Y~~A 96 (144)
T 1y8m_A 20 QQLEILRQQVVSEGG-PTATIQSRFNYAWGLIK-STDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG-EYSMA 96 (144)
T ss_dssp HHHHHHHHHHHHTTS-TTSCHHHHHHHHHHHHH-SSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTT-CHHHH
T ss_pred HHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhh-hHHHH
Confidence 344455555554322 35678899999977776 55 34589999999999998 56789999999999988 59999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199 140 ATYYERAVHASPEDSHVHASYAGFLWE 166 (197)
Q Consensus 140 ~~~~~~al~~~p~~~~~~~~la~~~~~ 166 (197)
+.+.+..|++.|+|..+..-...+-.+
T Consensus 97 r~y~d~lL~~eP~n~QA~~Lk~~Ie~~ 123 (144)
T 1y8m_A 97 KRYVDTLFEHERNNKQVGALKSMVEDK 123 (144)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 999999999999999987766655544
No 229
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.73 E-value=0.00054 Score=48.34 Aligned_cols=100 Identities=12% Similarity=-0.040 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQ---DLPKAEEYYSRAILADP-GDGEILSQYAKLVWELHNDQDRA 139 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g---~~~~A~~~~~~al~l~P-~~~~~~~~lg~~l~~~~~~~~~A 139 (197)
.++....+-|++-+ ...-.+.+-+++|..+.. .. +..+++.+++..++.+| ..-+.++.+|..++++|+ |++|
T Consensus 21 eeL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~-S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgd-Y~~A 97 (134)
T 3o48_A 21 QQLEILRQQVVSEG-GPTATIQSRFNYAWGLIK-STDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE-YSMA 97 (134)
T ss_dssp HHHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHH-SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC-HHHH
T ss_pred HHHHHHHHHHHHHh-CCCCChhhHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhh-HHHH
Confidence 44555566665533 223367888999977776 44 34579999999999999 457899999999999995 9999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199 140 ATYYERAVHASPEDSHVHASYAGFLWE 166 (197)
Q Consensus 140 ~~~~~~al~~~p~~~~~~~~la~~~~~ 166 (197)
+.+.+..|++.|+|..+..-...+-.+
T Consensus 98 r~y~d~lL~~eP~N~QA~~Lk~~Ie~k 124 (134)
T 3o48_A 98 KRYVDTLFEHERNNKQVGALKSMVEDK 124 (134)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 999999999999999987766655444
No 230
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.0013 Score=59.17 Aligned_cols=117 Identities=11% Similarity=0.093 Sum_probs=83.6
Q ss_pred CCC-HHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHh--------CCCC----------HHHH
Q 029199 63 GGD-SQGVEEYYKKMVEENPGNPLFLSNYAQ-FLYQSKQDLPKAEEYYSRAILA--------DPGD----------GEIL 122 (197)
Q Consensus 63 ~g~-~~~A~~~~~~al~~~P~~~~~~~~la~-~l~~~~g~~~~A~~~~~~al~l--------~P~~----------~~~~ 122 (197)
.++ ++.|+..+++..+.+|.....+..... ++.....+--+|+..+.++++- .+.+ ...+
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL 340 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLL 340 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHH
Confidence 345 688999999999999977654432211 1111123456677777777642 2333 2355
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 123 SQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 123 ~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.--+.++...+ +++-|+++-++|+.+.|+....|+.|+.||..+|+++.|.-.+--+
T Consensus 341 ~~Qa~FLl~K~-~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 341 NIQTNFLLNRG-DYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHhccC-cHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 55577777755 6999999999999999999999999999999999999985443333
No 231
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.25 E-value=0.0064 Score=52.20 Aligned_cols=118 Identities=7% Similarity=0.043 Sum_probs=91.1
Q ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEEN--PGNPLFLSNYAQFLYQSKQ---------DLPKAEEYYSRAILAD-PGDGEILSQYAKLVW 130 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~l~~~~g---------~~~~A~~~~~~al~l~-P~~~~~~~~lg~~l~ 130 (197)
.|+.++|++.|++..+.. | +...|+.+-..+.. .+ ..++|.+.|++..... +-|...+..+-..+.
T Consensus 39 ~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~-~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~ 116 (501)
T 4g26_A 39 KGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSL-AEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV 116 (501)
T ss_dssp SCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTT-CCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHh-CCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 699999999999998763 5 34445544433332 22 4789999999988764 336677788888889
Q ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCccccccCCCccccc
Q 029199 131 ELHNDQDRAATYYERAVHAS-PEDSHVHASYAGFLWETEEDNDECDAPSELDSN 183 (197)
Q Consensus 131 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~ea~~~~~~~~~~ 183 (197)
+.|+ +++|.+.|++..+.. +.+...|..+-..+.+.|+.++|.+.|+++...
T Consensus 117 ~~g~-~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 117 AKDD-PEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHTC-HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hcCC-HHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9885 999999999988763 336889999999999999999999999987433
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.24 E-value=0.0012 Score=47.16 Aligned_cols=85 Identities=9% Similarity=0.022 Sum_probs=67.8
Q ss_pred CCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCHHHH
Q 029199 26 GTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG-NPLFLSNYAQFLYQSKQDLPKA 104 (197)
Q Consensus 26 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~l~~~~g~~~~A 104 (197)
++.++...|..++++-.-. +..+..+++..++..++..|. .-+.++.+|.-+++ .|+|++|
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~-----------------~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~yk-l~~Y~~A 96 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKST-----------------DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMA 96 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSS-----------------SHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHT-TTCHHHH
T ss_pred CCCcHHHHHHHHHHHHcCC-----------------CHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHH-hhhHHHH
Confidence 3567788888877765421 135667999999999999995 56678888877776 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 105 EEYYSRAILADPGDGEILSQYAKL 128 (197)
Q Consensus 105 ~~~~~~al~l~P~~~~~~~~lg~~ 128 (197)
+.+.+..|+.+|+|..+......+
T Consensus 97 r~y~d~lL~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 97 KRYVDTLFEHERNNKQVGALKSMV 120 (144)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHH
Confidence 999999999999999987666544
No 233
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.18 E-value=0.0017 Score=45.80 Aligned_cols=87 Identities=9% Similarity=0.010 Sum_probs=69.3
Q ss_pred cCCCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCHHH
Q 029199 25 RGTVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEENPG-NPLFLSNYAQFLYQSKQDLPK 103 (197)
Q Consensus 25 ~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~l~~~~g~~~~ 103 (197)
.+..++...|..++++-.-. ...+..+++..++..++.+|. .-+.++.+|.-+++ .|+|++
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~-----------------~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yk-lgdY~~ 96 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKST-----------------DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSM 96 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSS-----------------CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCC-----------------CHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH-hhhHHH
Confidence 34457777788777764421 124667999999999999994 47788889977787 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH
Q 029199 104 AEEYYSRAILADPGDGEILSQYAKLV 129 (197)
Q Consensus 104 A~~~~~~al~l~P~~~~~~~~lg~~l 129 (197)
|+.+.+..|+.+|+|..+......+-
T Consensus 97 Ar~y~d~lL~~eP~N~QA~~Lk~~Ie 122 (134)
T 3o48_A 97 AKRYVDTLFEHERNNKQVGALKSMVE 122 (134)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 99999999999999999987766543
No 234
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.68 E-value=0.015 Score=50.02 Aligned_cols=80 Identities=20% Similarity=0.221 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 029199 86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLW 165 (197)
Q Consensus 86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 165 (197)
.+..+|.+... ...++.|..+|.+|+.++|++...++.+|.+....+ +.-+|+-+|.+++......+.+..|+...+.
T Consensus 154 ~l~~LGDL~RY-~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~-~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARY-RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG-DHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT-CHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHH-HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhccc-ccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 45568866665 789999999999999999999999999998877766 4779999999999988789999999999998
Q ss_pred Hc
Q 029199 166 ET 167 (197)
Q Consensus 166 ~~ 167 (197)
+.
T Consensus 232 ~~ 233 (497)
T 1ya0_A 232 KA 233 (497)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 235
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.38 E-value=0.079 Score=41.75 Aligned_cols=64 Identities=22% Similarity=0.205 Sum_probs=56.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199 61 GSGGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQY 125 (197)
Q Consensus 61 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~l 125 (197)
.+.|++++|++..+..++.+|.|......|-.++.. .|+++.|.+.++.+.+++|.....-..+
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv-~G~w~RA~~QL~~~a~l~p~~~~~a~~y 71 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPGASQL 71 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 446999999999999999999999999999988887 9999999999999999999876654333
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.011 Score=53.32 Aligned_cols=114 Identities=10% Similarity=0.009 Sum_probs=78.8
Q ss_pred HHHHhhhcCcccccCCCChhhHHhhhccc-CCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHh--------CCC
Q 029199 12 VMEALWNAGFEQERGTVGQEMYLAKGLGV-GGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEE--------NPG 82 (197)
Q Consensus 12 ~~~a~~~~~~~~~~~p~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P~ 82 (197)
+.-|+..|....+.+|...-.+....+.+ ..+ ..+--+|++.+.+.++. .+.
T Consensus 265 ~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~-------------------~~~Ev~av~ll~~~l~~~~~~~~~l~~~ 325 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDIYYKTAMITILDHI-------------------ETKELDMITILNETLDPLLSLLNDLPPR 325 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTC-------------------GGGHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHh-------------------hhhhHHHHHHHHHHHHHhhhhhhhhccc
Confidence 34466666666666775544333333322 221 12345788888777742 233
Q ss_pred C----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029199 83 N----------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERA 146 (197)
Q Consensus 83 ~----------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~a 146 (197)
+ ...+..-+.++.. .|+++-|+.+-++|+..-|.+...|+.++.+|..++ |++.|+-.+.-+
T Consensus 326 ~~~~~~~~~~~~~LL~~Qa~FLl~-K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~-d~e~ALLtLNSc 397 (754)
T 4gns_B 326 DADSARLMNCMSDLLNIQTNFLLN-RGDYELALGVSNTSTELALDSFESWYNLARCHIKKE-EYEKALFAINSM 397 (754)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT-CHHHHHHHHHHS
T ss_pred ccccccccCcchHHHHHHHHHHhc-cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhc-cHHHHHHHHhcC
Confidence 3 2344445777887 899999999999999999999999999999999998 599999766554
No 237
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.72 E-value=0.089 Score=41.47 Aligned_cols=62 Identities=24% Similarity=0.231 Sum_probs=56.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 029199 94 LYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVH 157 (197)
Q Consensus 94 l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~ 157 (197)
+.+ .|+.++|+......++.+|.|+.....+-.+|+-.| ++++|.+.++.+.+++|+....-
T Consensus 7 ll~-~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G-~w~RA~~QL~~~a~l~p~~~~~a 68 (273)
T 1zbp_A 7 ALS-EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDG-DFERADEQLMQSIKLFPEYLPGA 68 (273)
T ss_dssp HTT-TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHh-CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCchhhHHH
Confidence 344 799999999999999999999999999999999988 59999999999999999876654
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.60 E-value=0.18 Score=41.65 Aligned_cols=83 Identities=12% Similarity=0.010 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHHhCC--------CC--H------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 029199 64 GDSQGVEEYYKKMVEENP--------GN--P------------LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEI 121 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P--------~~--~------------~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~ 121 (197)
|+.+.|...+++|+.+-- .. . .+...++..+.. .|++.+++..+++++..+|-+..+
T Consensus 129 ~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~-~g~~~~a~~~l~~~~~~~P~~E~~ 207 (388)
T 2ff4_A 129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIA-CGRASAVIAELEALTFEHPYREPL 207 (388)
T ss_dssp TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHH
Confidence 677888888888887631 11 1 122234445555 899999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199 122 LSQYAKLVWELHNDQDRAATYYERAVH 148 (197)
Q Consensus 122 ~~~lg~~l~~~~~~~~~A~~~~~~al~ 148 (197)
+..+-.+|+..|+ ..+|++.|++.-+
T Consensus 208 ~~~lm~al~~~Gr-~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 208 WTQLITAYYLSDR-QSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHTTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence 9999999999886 8899999888654
No 239
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.45 E-value=0.063 Score=46.11 Aligned_cols=68 Identities=19% Similarity=0.183 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWE 131 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~ 131 (197)
...+..|..+|.+|+.++|++...++.||.+... .|+.-+|+-+|-+++......+.+..|+...+-.
T Consensus 165 ~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~-~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 165 RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-KGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-TTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhc-ccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 4677899999999999999999999999955555 8999999999999998887789999998876554
No 240
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.72 E-value=0.18 Score=44.56 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRA 111 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~a 111 (197)
|++++|.+.. ...+++..|..+|..+.. .++++.|+.+|.++
T Consensus 666 ~~~~~A~~~~-----~~~~~~~~W~~la~~al~-~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 666 GQLTLARDLL-----TDESAEMKWRALGDASLQ-RFNFKLAIEAFTNA 707 (814)
T ss_dssp TCHHHHHHHH-----TTCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred CCHHHHHHHH-----HhhCcHhHHHHHHHHHHH-cCCHHHHHHHHHHc
Confidence 5666665553 334678889999977776 89999999999885
No 241
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.16 E-value=0.94 Score=33.30 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAI 112 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al 112 (197)
|+++.|.+..++. ++...|..||..... .|+++-|+.||.++-
T Consensus 19 g~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~-~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 19 GNLDAALDEAKKL-----NDSITWERLIQEALA-QGNASLAEMIYQTQH 61 (177)
T ss_dssp TCHHHHHHHHHHH-----CCHHHHHHHHHHHHH-TTCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHh-----CCHHHHHHHHHHHHH-cCChHHHHHHHHHhC
Confidence 8899999887665 688999999988887 999999999999874
No 242
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.64 E-value=0.92 Score=40.01 Aligned_cols=106 Identities=14% Similarity=0.008 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHH--------HHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 029199 63 GGDSQGVEEYYKKM--------VEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHN 134 (197)
Q Consensus 63 ~g~~~~A~~~~~~a--------l~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~ 134 (197)
.|+++.|+++|.++ +.....+...+..++..... .|+++.|..+|.+. .+++- .-.+|.+.++
T Consensus 694 ~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~-~~~~~~A~~~~~~~-----g~~~~---a~~~~~~~~~ 764 (814)
T 3mkq_A 694 RFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAET-TGKFNLAFNAYWIA-----GDIQG---AKDLLIKSQR 764 (814)
T ss_dssp TTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHH-----TCHHH---HHHHHHHTTC
T ss_pred cCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHH-cCchHHHHHHHHHc-----CCHHH---HHHHHHHcCC
Confidence 49999999999986 22224444444555544444 56666555554432 11111 1223455453
Q ss_pred CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCc--cccccCCCccc
Q 029199 135 DQDRAATYYERAVHASPED---SHVHASYAGFLWETEED--NDECDAPSELD 181 (197)
Q Consensus 135 ~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~--~ea~~~~~~~~ 181 (197)
+++|...-++ ..|.. +.+...++.-+...|+. .++...++.+|
T Consensus 765 -~~~A~~lA~~---~~~~~~~i~~~~~~~~~~L~~~~~~~~a~~l~~~~~~~ 812 (814)
T 3mkq_A 765 -FSEAAFLGST---YGLGDNEVNDIVTKWKENLILNGKNTVSERVCGAEGLP 812 (814)
T ss_dssp -HHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHTTTCHHHHTTBCCGGGCC
T ss_pred -hHHHHHHHHH---hCCChHHHHHHHHHHHHHHHhccchhHHHhhCCcccCC
Confidence 6666664443 44544 36677778888888875 34556666543
No 243
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=93.16 E-value=1.9 Score=31.86 Aligned_cols=87 Identities=21% Similarity=0.073 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--Hh---------------CCCCHHH-HHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAI--LA---------------DPGDGEI-LSQ 124 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al--~l---------------~P~~~~~-~~~ 124 (197)
.|++..++-.+.+ -+.....+--+.++.. ..++.+|+.++++.+ +. ||.+-+. ...
T Consensus 46 ngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~k-lKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l 119 (242)
T 3kae_A 46 NGEYTRALFHLHK-----LNTCTSKYYESLCYKK-KKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESL 119 (242)
T ss_dssp TTCHHHHHHHHHT-----CCBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHH
T ss_pred cchHhHHHHHHHh-----cchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHH
Confidence 4777777654322 2333444434436665 899999999999998 22 3555554 445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 029199 125 YAKLVWELHNDQDRAATYYERAVHASPEDSHV 156 (197)
Q Consensus 125 lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~ 156 (197)
+|.++.+.| +.++|+.+|......+|=-+.+
T Consensus 120 ~a~lltq~g-~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 120 LGDLCTLSG-YREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhc-CHHHhhhHhhhhcCCccccchH
Confidence 677777766 5899999999999988865443
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.86 E-value=0.49 Score=44.53 Aligned_cols=104 Identities=12% Similarity=0.027 Sum_probs=74.5
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---C--------------------CCCHHHHHHHHHHHHHH
Q 029199 76 MVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA---D--------------------PGDGEILSQYAKLVWEL 132 (197)
Q Consensus 76 al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l---~--------------------P~~~~~~~~lg~~l~~~ 132 (197)
.+...|.++..-+.+|.++.. .|++++|..+|+++-.- + ..-+..+.....++.+
T Consensus 834 l~~~~~~~~~~~yl~g~~~L~-~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~- 911 (1139)
T 4fhn_B 834 LIGWLNSDPIAVYLKALIYLK-SKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFE- 911 (1139)
T ss_dssp HHHHSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHH-
T ss_pred HhhhccCCcHHHHHHHHHHHh-cCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHH-
Confidence 445678888888899988887 99999999999887311 0 1122334444444444
Q ss_pred cCCHHHHHHHHHHHHHhCC-CCHH----HHHHHHHHHHHcCCccccccCCCccc
Q 029199 133 HNDQDRAATYYERAVHASP-EDSH----VHASYAGFLWETEEDNDECDAPSELD 181 (197)
Q Consensus 133 ~~~~~~A~~~~~~al~~~p-~~~~----~~~~la~~~~~~g~~~ea~~~~~~~~ 181 (197)
.+.++.+++..+.|++..+ +++. .|.++=.....+|+|++|-..+-.+|
T Consensus 912 ~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p 965 (1139)
T 4fhn_B 912 ESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS 965 (1139)
T ss_dssp TSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence 4468999999999998764 4442 67888888999999999976665544
No 245
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.48 E-value=0.79 Score=42.83 Aligned_cols=92 Identities=9% Similarity=-0.087 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Q 029199 87 LSNYAQFLYQSKQDLPKAEEYYSRAILA----DPGDGEILSQYAKLVWELHNDQDRAATYYERAVHAS-PEDSHVHASYA 161 (197)
Q Consensus 87 ~~~la~~l~~~~g~~~~A~~~~~~al~l----~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la 161 (197)
++.+-..+.+ .|+.++|...|+..-+. -.-|...++.+-..|.+.|+ .++|.+.|++..+.. ..|...|..+-
T Consensus 130 ynaLIdglcK-~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~-~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 130 LLAFFKCCLL-TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA-FKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHH-HTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHh-CCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4445555555 78888888888654321 23356666677677778775 888888888887653 33577778888
Q ss_pred HHHHHcCCc-cccccCCCcc
Q 029199 162 GFLWETEED-NDECDAPSEL 180 (197)
Q Consensus 162 ~~~~~~g~~-~ea~~~~~~~ 180 (197)
.++.+.|+. ++|.+.|+++
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM 227 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQM 227 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHH
Confidence 888888875 4566677665
No 246
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=92.21 E-value=0.78 Score=33.93 Aligned_cols=94 Identities=11% Similarity=0.015 Sum_probs=67.9
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h-------
Q 029199 79 ENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVH--A------- 149 (197)
Q Consensus 79 ~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~--~------- 149 (197)
+-|+.++.-..++..++- .|.+..++-++. .-+.....+.-..||...+ |+.+|+.++++.++ .
T Consensus 28 L~~~~~eY~lL~~I~Lyy-ngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klK-dYkkA~~~le~il~~kvd~d~~~d 100 (242)
T 3kae_A 28 LLPCKPEYRMLMSIVLYL-NGEYTRALFHLH-----KLNTCTSKYYESLCYKKKK-DYKKAIKSLESILEGKVERDPDVD 100 (242)
T ss_dssp HC----CTHHHHHHHHHH-TTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCSBCCCCCC
T ss_pred HccCChHHHhhhhhhhhh-cchHhHHHHHHH-----hcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccccCcccc
Confidence 345555666667877887 899988776543 3456777777888888877 69999999999992 2
Q ss_pred --------CCCCHHH-HHHHHHHHHHcCCccccccCCCc
Q 029199 150 --------SPEDSHV-HASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 150 --------~p~~~~~-~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
+|.+.+. +..+|.++.++|..+||+..+..
T Consensus 101 ~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 101 ARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence 3555555 45689999999999999876655
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.89 E-value=0.5 Score=38.98 Aligned_cols=50 Identities=16% Similarity=0.148 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAIL 113 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~ 113 (197)
.|++++++..+++++..+|-+..+|..+-.+++. .|+..+|+..|++.-+
T Consensus 184 ~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~-~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 184 CGRASAVIAELEALTFEHPYREPLWTQLITAYYL-SDRQSDALGAYRRVKT 233 (388)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 5999999999999999999999999999988887 9999999999988765
No 248
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.06 E-value=1.5 Score=38.53 Aligned_cols=115 Identities=11% Similarity=0.086 Sum_probs=68.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHh--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFL-SNYAQFLYQS--KQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAA 140 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~-~~la~~l~~~--~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~ 140 (197)
.+.+.|...+.+..+..+-+...+ .....+.... .+...++...+.++....+++....+..+..+ ..+ +++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Al-r~~-d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMAL-GTG-DRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HHT-CHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHH-HCC-CHHHHH
Confidence 466777777766654433333322 2222122110 12256777777776654444444444444444 435 588888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCcc
Q 029199 141 TYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 141 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.+|++.-....+.+...|.+|..+..+|+.++|...|+++
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~ 345 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQL 345 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8887765433456777888888888888888887777665
No 249
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=89.62 E-value=12 Score=35.14 Aligned_cols=86 Identities=5% Similarity=-0.176 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCH
Q 029199 63 GGDSQGVEEYYKKMVE-----ENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD-PGDGEILSQYAKLVWELHNDQ 136 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~-----~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~l~~~~~~~ 136 (197)
.|+.++|.+.|.+.-+ ..| +...|+-+-.-+.+ .|+.++|.+.|++..+.. .-|...+..+-.++.+.|+..
T Consensus 140 ~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck-~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~ 217 (1134)
T 3spa_A 140 TDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWAR-QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217 (1134)
T ss_dssp HTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCH
T ss_pred CCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcH
Confidence 4999999999976432 456 45566666657776 899999999999998753 235556666666888878656
Q ss_pred HHHHHHHHHHHHhC
Q 029199 137 DRAATYYERAVHAS 150 (197)
Q Consensus 137 ~~A~~~~~~al~~~ 150 (197)
++|.++|+...+..
T Consensus 218 e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 218 GTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC
Confidence 78999999998775
No 250
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=88.27 E-value=4.3 Score=29.75 Aligned_cols=55 Identities=13% Similarity=0.113 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029199 82 GNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERA 146 (197)
Q Consensus 82 ~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~a 146 (197)
.|+...+.++ .. .|+++.|.+..+.. ++...|..+|..-...| +++-|..||.++
T Consensus 6 ~D~~~rF~LA---L~-lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~g-n~~lAe~cy~~~ 60 (177)
T 3mkq_B 6 QDPHIRFDLA---LE-YGNLDAALDEAKKL-----NDSITWERLIQEALAQG-NASLAEMIYQTQ 60 (177)
T ss_dssp SCHHHHHHHH---HH-TTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTT-CHHHHHHHHHHT
T ss_pred CChHHHHHHH---Hh-cCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcC-ChHHHHHHHHHh
Confidence 4677777777 35 89999999987765 68999999999988867 599999999875
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.31 E-value=4.8 Score=33.31 Aligned_cols=114 Identities=9% Similarity=-0.035 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCH----HHHHHHHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFL------SNYAQFLYQSKQDLPKAEEYYSRAILAD--PGDG----EILSQYAKLVWE 131 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~------~~la~~l~~~~g~~~~A~~~~~~al~l~--P~~~----~~~~~lg~~l~~ 131 (197)
+..+.-++...++++-.-+.-..| ..||.+++. .|++.+|...+.+.++-- .++. +++..-..++..
T Consensus 73 ~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~-~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~ 151 (394)
T 3txn_A 73 AGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFD-TALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA 151 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Confidence 334445555555554332222222 278988887 999999999998887641 1222 445555667888
Q ss_pred HcCCHHHHHHHHHHHHHhC---CCCHH----HHHHHHHHHH-HcCCccccccCCCc
Q 029199 132 LHNDQDRAATYYERAVHAS---PEDSH----VHASYAGFLW-ETEEDNDECDAPSE 179 (197)
Q Consensus 132 ~~~~~~~A~~~~~~al~~~---p~~~~----~~~~la~~~~-~~g~~~ea~~~~~~ 179 (197)
++ ++.++...|.+|.+.. +.+|. +..--|..+. ..++|.+|...|-+
T Consensus 152 ~~-n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 152 LS-NLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred hc-cHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 77 5999999999997654 24454 3456677888 89999998554443
No 252
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.30 E-value=0.48 Score=39.61 Aligned_cols=95 Identities=13% Similarity=0.064 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHH--
Q 029199 83 NPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADP---GDGEILSQYAKLVWELHNDQDRAATYYERAVHAS--PEDSH-- 155 (197)
Q Consensus 83 ~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P---~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~--p~~~~-- 155 (197)
-..++..+|.+++. .|++++|.++|.++..... .-.++++..-.+....+ |+..+..++.++..+. ..++.
T Consensus 130 ~~~~~~~la~~~~~-~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~-d~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 130 QAQAWINLGEYYAQ-IGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYN-DQLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp CSSCCHHHHHHHHH-HCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 34578889988887 9999999999999887642 23466666767777767 6999999999997652 23333
Q ss_pred --HHHHHHHHHHHcCCccccccCCCc
Q 029199 156 --VHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 156 --~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
.....|.++...++|.+|...|-.
T Consensus 208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e 233 (429)
T 4b4t_R 208 NRYKTYYGIHCLAVRNFKEAAKLLVD 233 (429)
T ss_dssp HHHHHHHHHGGGGTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 334556677778888888665554
No 253
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.24 E-value=14 Score=30.43 Aligned_cols=108 Identities=11% Similarity=-0.069 Sum_probs=70.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCHHH----HHHHHH
Q 029199 61 GSGGDSQGVEEYYKKMVEENPG--N----PLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD---PGDGEI----LSQYAK 127 (197)
Q Consensus 61 ~~~g~~~~A~~~~~~al~~~P~--~----~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~---P~~~~~----~~~lg~ 127 (197)
...|++.+|.+.+.+.++.-.. + .+++..-..++.. .+++.++...|.+|.+.. +.+|.+ ..--|.
T Consensus 110 ~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~-~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi 188 (394)
T 3txn_A 110 FDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA-LSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGI 188 (394)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhH
Confidence 3459999999999998874221 2 3344444556666 899999999999987653 244433 333465
Q ss_pred HHH-HHcCCHHHHHHHHHHHHHhCCC--CH---HHHHHHHHHHHHcCCc
Q 029199 128 LVW-ELHNDQDRAATYYERAVHASPE--DS---HVHASYAGFLWETEED 170 (197)
Q Consensus 128 ~l~-~~~~~~~~A~~~~~~al~~~p~--~~---~~~~~la~~~~~~g~~ 170 (197)
++. . .++|++|..+|-.+++...+ ++ .+...++.|-.-.++.
T Consensus 189 ~~l~~-~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 189 LHAAD-ERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQS 236 (394)
T ss_dssp HHHHT-TSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHh-ccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCH
Confidence 665 5 44799999999999754322 12 3344455555555553
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.23 E-value=14 Score=30.68 Aligned_cols=88 Identities=15% Similarity=0.061 Sum_probs=62.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHH----HHHHHHHHHH
Q 029199 62 SGGDSQGVEEYYKKMVEENPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD--PGDGEIL----SQYAKLVWEL 132 (197)
Q Consensus 62 ~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~--P~~~~~~----~~lg~~l~~~ 132 (197)
..|++++|.++|.++....... .+.+.....+... .+++..+...+.++-.+- ..++... ...|.++...
T Consensus 143 ~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~-~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~ 221 (429)
T 4b4t_R 143 QIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF-YNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAV 221 (429)
T ss_dssp HHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGT
T ss_pred HcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHh
Confidence 3499999999999988764333 4566666666666 899999999999987652 3344333 3345555554
Q ss_pred cCCHHHHHHHHHHHHHhCC
Q 029199 133 HNDQDRAATYYERAVHASP 151 (197)
Q Consensus 133 ~~~~~~A~~~~~~al~~~p 151 (197)
+ +|.+|..+|-.++....
T Consensus 222 r-~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 222 R-NFKEAAKLLVDSLATFT 239 (429)
T ss_dssp S-CHHHHHHHHHHHHHHSC
T ss_pred C-hHHHHHHHHHHHhccCC
Confidence 4 69999999988876643
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.06 E-value=21 Score=29.71 Aligned_cols=94 Identities=7% Similarity=0.037 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-C-CCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHH
Q 029199 85 LFLSNYAQFLYQSKQDLPKAEEYYSRAILA-D-PGD----GEILSQYAKLVWELHNDQDRAATYYERAVH---ASPEDSH 155 (197)
Q Consensus 85 ~~~~~la~~l~~~~g~~~~A~~~~~~al~l-~-P~~----~~~~~~lg~~l~~~~~~~~~A~~~~~~al~---~~p~~~~ 155 (197)
.....|+.++.. .|++.+|...+.....- . ..+ .+++.....++...+ |+.+|...+.++.. ..+.++.
T Consensus 138 rl~~~La~i~e~-~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~-d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 138 RVTKDLVEIKKE-EGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKG-DYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhhcccCCcHH
Confidence 345678877777 99999999999886532 1 112 245666667778866 69999999999743 2345554
Q ss_pred ----HHHHHHHHHHHcCCccccccCCCcc
Q 029199 156 ----VHASYAGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 156 ----~~~~la~~~~~~g~~~ea~~~~~~~ 180 (197)
.+.-.|.++...++|.+|...|.++
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4567788888899999998777765
No 256
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.95 E-value=3.4 Score=35.51 Aligned_cols=83 Identities=12% Similarity=0.119 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---
Q 029199 86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGD-------GEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSH--- 155 (197)
Q Consensus 86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~-------~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~--- 155 (197)
.++.+-..|.. .+.+++|.....++. .|.+ ...++.+|.++...+ +|.+|.+++..|++..|.+..
T Consensus 233 l~nllLRnYL~-~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~-~Y~eA~~~L~~A~rkap~~~~a~g 308 (523)
T 4b4t_S 233 LINLILRDFLN-NGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQL-DYSTANEYIIAAIRKAPHNSKSLG 308 (523)
T ss_dssp HHHHHHHHHHH-SSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTSSCSCSSSCSH
T ss_pred HHHHHHHHHHc-cCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCcchhhhh
Confidence 44444445555 899999999999985 5533 345666798888866 599999999999998875432
Q ss_pred ----HHHHHHHHHHHcCCccc
Q 029199 156 ----VHASYAGFLWETEEDND 172 (197)
Q Consensus 156 ----~~~~la~~~~~~g~~~e 172 (197)
++-.+..+-.-+|+.-+
T Consensus 309 fr~~a~K~lI~V~LLlG~iP~ 329 (523)
T 4b4t_S 309 FLQQSNKLHCCIQLLMGDIPE 329 (523)
T ss_dssp HHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHhHHhhcCCCCC
Confidence 22233344444688665
No 257
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=77.73 E-value=9.2 Score=29.26 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=21.4
Q ss_pred HHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 029199 68 GVEEYYKKMVE-----ENPGNPL---FLSNYAQFLYQSKQDLPKAEEYYSRAI 112 (197)
Q Consensus 68 ~A~~~~~~al~-----~~P~~~~---~~~~la~~l~~~~g~~~~A~~~~~~al 112 (197)
.|.+.|++|+. +.|.+|. ...|++.++|...++.++|....++|+
T Consensus 148 ~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~af 200 (234)
T 2br9_A 148 NSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 200 (234)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44445555542 3444443 223444555555555555555544444
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=76.75 E-value=11 Score=35.50 Aligned_cols=123 Identities=11% Similarity=-0.024 Sum_probs=82.5
Q ss_pred CCChhhHHhhhcccCCCCCCCCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHh-----------------------CCCC
Q 029199 27 TVGQEMYLAKGLGVGGRGGRGGGTGGGGSGFYPAGSGGDSQGVEEYYKKMVEE-----------------------NPGN 83 (197)
Q Consensus 27 p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----------------------~P~~ 83 (197)
|.++..-+-.|..+-.+ |++++|..+|+++..- ....
T Consensus 839 ~~~~~~~yl~g~~~L~~--------------------ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 898 (1139)
T 4fhn_B 839 NSDPIAVYLKALIYLKS--------------------KEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLL 898 (1139)
T ss_dssp CCCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSS
T ss_pred cCCcHHHHHHHHHHHhc--------------------CCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccH
Confidence 44555556667766554 8999999999887210 1112
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 029199 84 PLFLSNYAQFLYQSKQDLPKAEEYYSRAILADP-GDGE----ILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHA 158 (197)
Q Consensus 84 ~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P-~~~~----~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 158 (197)
+..|.... .++.+.+.++.+++..+.|++..+ +++. .|.++=.....+++ |++|-..+...-. ....-..+.
T Consensus 899 ~~YY~hv~-~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~-ye~Ay~aL~~~pd-~~~r~~cLr 975 (1139)
T 4fhn_B 899 SCYYLHLS-KKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK-FDAAHVALMVLST-TPLKKSCLL 975 (1139)
T ss_dssp HHHHHHHH-HHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC-SGGGGHHHHHHHH-SSSCHHHHH
T ss_pred HHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC-HHHHHHHHHhCCC-HHHHHHHHH
Confidence 34556666 445548999999999999998764 4442 56677777888896 8999887755422 223456677
Q ss_pred HHHHHHHHcCCccc
Q 029199 159 SYAGFLWETEEDND 172 (197)
Q Consensus 159 ~la~~~~~~g~~~e 172 (197)
.+...+.+.|+.++
T Consensus 976 ~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 976 DFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHCCHHH
T ss_pred HHHHHHHhCCChhh
Confidence 77777777776665
No 259
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=76.20 E-value=11 Score=29.44 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=23.0
Q ss_pred HHHHHHHHHHH----hCCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 029199 68 GVEEYYKKMVE----ENPGNPL---FLSNYAQFLYQSKQDLPKAEEYYSRAI 112 (197)
Q Consensus 68 ~A~~~~~~al~----~~P~~~~---~~~~la~~l~~~~g~~~~A~~~~~~al 112 (197)
.|.+.|++|+. +.|.+|. ...|++.++|..+++.++|....++|+
T Consensus 174 ~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 225 (260)
T 2npm_A 174 DALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAF 225 (260)
T ss_dssp HHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555555554 3444443 233455555555566666655555554
No 260
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=75.92 E-value=11 Score=28.88 Aligned_cols=46 Identities=17% Similarity=0.364 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 029199 67 QGVEEYYKKMVE-----ENPGNPL---FLSNYAQFLYQSKQDLPKAEEYYSRAI 112 (197)
Q Consensus 67 ~~A~~~~~~al~-----~~P~~~~---~~~~la~~l~~~~g~~~~A~~~~~~al 112 (197)
+.|.+.|++|.. +.|.+|. ...|++.++|...++.++|....++|+
T Consensus 150 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Af 203 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTF 203 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555555543 3445543 233445555555556655555544443
No 261
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=75.76 E-value=11 Score=29.34 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029199 67 QGVEEYYKKMVE-----ENPGNPL---FLSNYAQFLYQSKQDLPKAEEYYSRAIL 113 (197)
Q Consensus 67 ~~A~~~~~~al~-----~~P~~~~---~~~~la~~l~~~~g~~~~A~~~~~~al~ 113 (197)
+.|.+.|++|+. +.|.+|. ...|++.++|..+++.++|....++|+.
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 356666776653 4566654 3345666677767777777777666653
No 262
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=75.32 E-value=19 Score=25.54 Aligned_cols=80 Identities=19% Similarity=0.076 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYY 143 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~ 143 (197)
|+...-+.+|-+. +-.+..+-..|- .+.. +|+.++=.+.+...+..+|-+|+++..+|.+|.++| +..+|.+.+
T Consensus 75 ~NlKrVi~C~~~~---n~~se~vd~ALd-~lv~-~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg-~~r~a~eLl 148 (172)
T 1wy6_A 75 QNLKSVVECGVIN---NTLNEHVNKALD-ILVI-QGKRDKLEEIGREILKNNEVSASILVAIANALRRVG-DERDATTLL 148 (172)
T ss_dssp SCTHHHHHHHHHT---TCCCHHHHHHHH-HHHH-TTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred hcHHHHHHHHHHh---cchHHHHHHHHH-HHHH-hccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhc-chhhHHHHH
Confidence 7888888888653 333333333333 4555 899999888888887888889999999999999999 489999999
Q ss_pred HHHHHh
Q 029199 144 ERAVHA 149 (197)
Q Consensus 144 ~~al~~ 149 (197)
.+|.+.
T Consensus 149 ~~AC~k 154 (172)
T 1wy6_A 149 IEACKK 154 (172)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999764
No 263
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=75.21 E-value=13 Score=32.62 Aligned_cols=82 Identities=10% Similarity=0.082 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYY 143 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~ 143 (197)
+...++...+.+.....+++.......+ .... .|+++.|...|++.-...+..+...|-+|..+..+|+ .++|..+|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~e~~~r-~Alr-~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~-~~~a~~~~ 342 (618)
T 1qsa_A 266 DVTDEQAKWRDDAIMRSQSTSLIERRVR-MALG-TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGR-EAEAKEIL 342 (618)
T ss_dssp TCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHH-HTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred CCChHHHHHHHhccccCCChHHHHHHHH-HHHH-CCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCC-HHHHHHHH
Confidence 4356777888877665554443333334 4445 6999999999987655444678888999999888885 89999999
Q ss_pred HHHHH
Q 029199 144 ERAVH 148 (197)
Q Consensus 144 ~~al~ 148 (197)
+++..
T Consensus 343 ~~~a~ 347 (618)
T 1qsa_A 343 HQLMQ 347 (618)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 99875
No 264
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=75.08 E-value=12 Score=28.90 Aligned_cols=46 Identities=24% Similarity=0.411 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 029199 67 QGVEEYYKKMVE-----ENPGNPL---FLSNYAQFLYQSKQDLPKAEEYYSRAI 112 (197)
Q Consensus 67 ~~A~~~~~~al~-----~~P~~~~---~~~~la~~l~~~~g~~~~A~~~~~~al 112 (197)
+.|.+.|++|.. +.|.+|. ...|++.++|..+++.++|....++|+
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Af 201 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAF 201 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555555543 3455543 233445555555566665555544444
No 265
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=72.75 E-value=29 Score=26.37 Aligned_cols=50 Identities=8% Similarity=-0.037 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEE-----NPGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAIL 113 (197)
Q Consensus 64 g~~~~A~~~~~~al~~-----~P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~ 113 (197)
|+.+.|.+.|++|..+ .|.+ -....|++.++|..+++.++|....++|+.
T Consensus 139 g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 139 CSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4577777777777653 2333 345666777777777888888777777765
No 266
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=72.66 E-value=18 Score=25.74 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 029199 63 GGDSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILA 114 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l 114 (197)
.|+.++-.+.+...+.-+|-+++.+..+|..|.+ .|+..+|.+++.+|-+.
T Consensus 104 ~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~K-lg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 104 QGKRDKLEEIGREILKNNEVSASILVAIANALRR-VGDERDATTLLIEACKK 154 (172)
T ss_dssp TTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHT
T ss_pred hccHhHHHHHHHHHhccCCCChHHHHHHHHHHHH-hcchhhHHHHHHHHHHh
Confidence 4777888888888777777789999999988777 99999999999999764
No 267
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=70.64 E-value=17 Score=27.79 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199 102 PKAEEYYSRAIL-----ADPGDGE---ILSQYAKLVWELHNDQDRAATYYERAVH 148 (197)
Q Consensus 102 ~~A~~~~~~al~-----l~P~~~~---~~~~lg~~l~~~~~~~~~A~~~~~~al~ 148 (197)
++|...|+.|+. +-|.+|. ...|++++|+..-++.++|.....+|+.
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888874 4688874 5677788889877788888887777764
No 268
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=70.58 E-value=17 Score=27.86 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199 102 PKAEEYYSRAIL-----ADPGDGE---ILSQYAKLVWELHNDQDRAATYYERAVH 148 (197)
Q Consensus 102 ~~A~~~~~~al~-----l~P~~~~---~~~~lg~~l~~~~~~~~~A~~~~~~al~ 148 (197)
+.|...|+.|+. +.|.+|. ...|++++|+..-++.++|....++|+.
T Consensus 150 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567888888765 5688884 5677888999887788998887666653
No 269
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.49 E-value=2.8 Score=36.11 Aligned_cols=115 Identities=8% Similarity=-0.031 Sum_probs=45.5
Q ss_pred CCCCCHHHHHHHHHHHH-----------HhCCCCHHHHHHHHHHHHHhcCCHHHH----------HHHHHHHH-----Hh
Q 029199 61 GSGGDSQGVEEYYKKMV-----------EENPGNPLFLSNYAQFLYQSKQDLPKA----------EEYYSRAI-----LA 114 (197)
Q Consensus 61 ~~~g~~~~A~~~~~~al-----------~~~P~~~~~~~~la~~l~~~~g~~~~A----------~~~~~~al-----~l 114 (197)
...+++++|.++-..++ .+|+-.+.+|+-++.++-. .|+.... +..+-.++ +.
T Consensus 147 ~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~-~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~ 225 (523)
T 4b4t_S 147 WDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHET-LARSSEEINSDNQNIILRSTMMKFLKIASLKH 225 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH-hcccccccccccchhhHHHHHHHHHHHHhccc
Confidence 33578888887766554 2355567777766633333 5655542 22222222 23
Q ss_pred CCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCccccccCCCc
Q 029199 115 DPGDG-EILSQYAKLVWELHNDQDRAATYYERAVHASPED-------SHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 115 ~P~~~-~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
|+..- .+++.+-..|...+ ++++|.....++. .|.+ ...+|.+|.++.-+++|.+|.+.+..
T Consensus 226 D~~~qa~l~nllLRnYL~~~-~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~ 295 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNG-EVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIA 295 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSS-CSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHccC-cHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 44333 34444555566645 6899999999984 4432 34567889999999999999655443
No 270
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=69.06 E-value=19 Score=28.03 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHH----hCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199 102 PKAEEYYSRAIL----ADPGDGE---ILSQYAKLVWELHNDQDRAATYYERAVH 148 (197)
Q Consensus 102 ~~A~~~~~~al~----l~P~~~~---~~~~lg~~l~~~~~~~~~A~~~~~~al~ 148 (197)
++|...|+.|+. +-|.+|. ...|++++|+..-++.++|.....+|+.
T Consensus 173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467888988885 5677874 5677888899877789999888877765
No 271
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=68.83 E-value=19 Score=27.73 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199 102 PKAEEYYSRAIL-----ADPGDGE---ILSQYAKLVWELHNDQDRAATYYERAVH 148 (197)
Q Consensus 102 ~~A~~~~~~al~-----l~P~~~~---~~~~lg~~l~~~~~~~~~A~~~~~~al~ 148 (197)
+.|...|+.|+. +.|.+|. ...|++++|+..-++.++|....++|+.
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567888888765 5688884 5677888999987788988887776654
No 272
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=68.36 E-value=32 Score=27.42 Aligned_cols=114 Identities=11% Similarity=0.012 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHHhC---CCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEEN---PGN---PLFLSNYAQFLYQSKQDLPKAEEYYSRAILA-----DPGDGEILSQYAKLVWEL 132 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~---P~~---~~~~~~la~~l~~~~g~~~~A~~~~~~al~l-----~P~~~~~~~~lg~~l~~~ 132 (197)
|++-+|.+.|+...... -+. .+.++.-+..+.+ .|+..-|-++..-.++. .|-+......+..++...
T Consensus 27 G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~-~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 27 GDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLK-AKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred cChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-CCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 77777777776654431 111 2234444444454 67777766543222222 344555556666554332
Q ss_pred cCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCccccccCCC
Q 029199 133 HNDQDRAATYYERAVHA-------SPEDSHVHASYAGFLWETEEDNDECDAPS 178 (197)
Q Consensus 133 ~~~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~ea~~~~~ 178 (197)
...-..=.++++++++- .-.+|..|..+|..+.+.|++.+|+.+|-
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 21111123444444432 22588999999999999999999887664
No 273
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=68.15 E-value=20 Score=27.87 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199 102 PKAEEYYSRAIL-----ADPGDGE---ILSQYAKLVWELHNDQDRAATYYERAVH 148 (197)
Q Consensus 102 ~~A~~~~~~al~-----l~P~~~~---~~~~lg~~l~~~~~~~~~A~~~~~~al~ 148 (197)
++|...|+.|+. +-|.+|. ...|++++|+..-++.++|.....+|+.
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 467888888874 5688884 5677888999887788888887777663
No 274
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=68.12 E-value=17 Score=22.41 Aligned_cols=31 Identities=6% Similarity=0.126 Sum_probs=19.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 029199 125 YAKLVWELHNDQDRAATYYERAVHASPEDSHV 156 (197)
Q Consensus 125 lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~ 156 (197)
+|..+...| ++++|..+|-+|+...|.....
T Consensus 23 ~GE~L~~~g-~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 23 LGEELLAQG-DYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHCC-CHHHHHHHHHHHHHHcCCHHHH
Confidence 555566655 3667777777777766655444
No 275
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=67.86 E-value=13 Score=23.45 Aligned_cols=16 Identities=25% Similarity=0.300 Sum_probs=9.8
Q ss_pred cCCHHHHHHHHHHHHH
Q 029199 98 KQDLPKAEEYYSRAIL 113 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~ 113 (197)
.|++++|+.+|..+++
T Consensus 32 ~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 32 EGNAEEAITNYKKAIE 47 (83)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 5666666666665554
No 276
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=67.66 E-value=13 Score=23.37 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=9.6
Q ss_pred cCCHHHHHHHHHHHHH
Q 029199 98 KQDLPKAEEYYSRAIL 113 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~ 113 (197)
.|++++|+.+|..+++
T Consensus 24 ~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 24 EGKVEDAITYYKKAIE 39 (83)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 5666666666655554
No 277
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=65.91 E-value=24 Score=27.44 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199 102 PKAEEYYSRAIL-----ADPGDGE---ILSQYAKLVWELHNDQDRAATYYERAVH 148 (197)
Q Consensus 102 ~~A~~~~~~al~-----l~P~~~~---~~~~lg~~l~~~~~~~~~A~~~~~~al~ 148 (197)
+.|...|++|+. +.|.+|. ...|++++|+..-++.++|....++|+.
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567788888765 4678874 5677888899887788888887777654
No 278
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=64.91 E-value=14 Score=28.79 Aligned_cols=47 Identities=26% Similarity=0.446 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHH-----h--CCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029199 67 QGVEEYYKKMVE-----E--NPGNPL---FLSNYAQFLYQSKQDLPKAEEYYSRAIL 113 (197)
Q Consensus 67 ~~A~~~~~~al~-----~--~P~~~~---~~~~la~~l~~~~g~~~~A~~~~~~al~ 113 (197)
+.|.+.|++|+. + .|.+|. ...|++.++|..+++.++|....++|+.
T Consensus 169 e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFd 225 (268)
T 3efz_A 169 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQ 225 (268)
T ss_dssp HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555655543 2 455543 2334555555556666666666666554
No 279
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=64.36 E-value=79 Score=29.07 Aligned_cols=35 Identities=11% Similarity=-0.034 Sum_probs=19.8
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029199 111 AILADPGDGEILSQYAKLVWELHNDQDRAATYYERA 146 (197)
Q Consensus 111 al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~a 146 (197)
.+..-|.++...+-+|.++...|+ +++|.++|++|
T Consensus 832 L~~~~~~t~~~~yv~gr~~L~~ge-~~~A~~~F~kA 866 (950)
T 4gq2_M 832 LIGWLNSDPIAVYLKALIYLKSKE-AVKAVRCFKTT 866 (950)
T ss_dssp HGGGCCSSHHHHHHHHHHHHHTTC-HHHHHHHHHTC
T ss_pred HHhhcCCChHHHHHHHHHHHHcCC-HHHHHHHHHHH
Confidence 334455555555666666666553 56666666543
No 280
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=64.12 E-value=13 Score=28.91 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029199 67 QGVEEYYKKMVE-----ENPGNPL---FLSNYAQFLYQSKQDLPKAEEYYSRAIL 113 (197)
Q Consensus 67 ~~A~~~~~~al~-----~~P~~~~---~~~~la~~l~~~~g~~~~A~~~~~~al~ 113 (197)
+.|.+.|++|+. +.|.+|. ...|++.++|..+++.++|....++|+.
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567888988865 5677865 3457788899989999999988877764
No 281
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=63.94 E-value=45 Score=25.27 Aligned_cols=52 Identities=10% Similarity=0.033 Sum_probs=42.3
Q ss_pred cCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 029199 98 KQDLPKAEEYYSRAILA-----DPGD---GEILSQYAKLVWELHNDQDRAATYYERAVHA 149 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~l-----~P~~---~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~ 149 (197)
.|+.+.|...|+.|..+ .|.+ .....|+.++|+..-++.++|....++|+..
T Consensus 138 ~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~ 197 (227)
T 2o8p_A 138 LCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKI 197 (227)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 35678899999998864 3444 4788899999999998999999999999764
No 282
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=63.68 E-value=20 Score=26.50 Aligned_cols=33 Identities=21% Similarity=0.137 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 029199 86 FLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG 119 (197)
Q Consensus 86 ~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~ 119 (197)
..+-+|.+... .+++.+|.+++.+|++.-|.+.
T Consensus 16 Y~YYlGr~~~~-~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 16 YKYYVGRKAMF-DSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHH-HhCHHHHHHHHHHHHHHCCHhH
Confidence 44556655555 6777777777777777766543
No 283
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.11 E-value=70 Score=26.50 Aligned_cols=85 Identities=12% Similarity=0.158 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCCCHHH----HHHHHHHH
Q 029199 63 GGDSQGVEEYYKKMVEEN--PGN----PLFLSNYAQFLYQSKQDLPKAEEYYSRAIL---ADPGDGEI----LSQYAKLV 129 (197)
Q Consensus 63 ~g~~~~A~~~~~~al~~~--P~~----~~~~~~la~~l~~~~g~~~~A~~~~~~al~---l~P~~~~~----~~~lg~~l 129 (197)
.|++.+|.+.++.....- ..+ .+++..-..++.. .+++.+|...++++.. ..+.++.. +...|.++
T Consensus 150 ~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~-~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~ 228 (445)
T 4b4t_P 150 EGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL-KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKIS 228 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHH
Confidence 499999999999876431 112 3455555667776 8999999999998742 34555543 34456555
Q ss_pred HHHcCCHHHHHHHHHHHHHh
Q 029199 130 WELHNDQDRAATYYERAVHA 149 (197)
Q Consensus 130 ~~~~~~~~~A~~~~~~al~~ 149 (197)
.. .++|.+|-.+|..++..
T Consensus 229 ~~-e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 229 LH-KREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HH-HCCHHHHHHHHHHHHHH
T ss_pred HH-hhhHHHHHHHHHHHHhc
Confidence 55 44799999999998865
No 284
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=60.31 E-value=28 Score=30.66 Aligned_cols=46 Identities=20% Similarity=0.210 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 029199 87 LSNYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELH 133 (197)
Q Consensus 87 ~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~ 133 (197)
....|...+. .|++.-|.+..+.++..+|+|..+...++.+|.+++
T Consensus 452 ~~~~a~~~~~-~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 452 LLEQARASYA-RGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 3445555666 799999999999999999999999999999988877
No 285
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=58.23 E-value=21 Score=27.83 Aligned_cols=48 Identities=27% Similarity=0.470 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHH-----h--CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 029199 102 PKAEEYYSRAIL-----A--DPGDGE---ILSQYAKLVWELHNDQDRAATYYERAVHA 149 (197)
Q Consensus 102 ~~A~~~~~~al~-----l--~P~~~~---~~~~lg~~l~~~~~~~~~A~~~~~~al~~ 149 (197)
++|.+.|+.|+. + .|.+|. ...|+.++|+..-++.++|....++|+.-
T Consensus 169 e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 169 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 567788888764 4 678874 56777888998777899999998888765
No 286
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=57.95 E-value=21 Score=22.59 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=12.4
Q ss_pred HhcCCHHHHHHHHHHHHHh
Q 029199 96 QSKQDLPKAEEYYSRAILA 114 (197)
Q Consensus 96 ~~~g~~~~A~~~~~~al~l 114 (197)
...|++++|+.+|..+++.
T Consensus 27 D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 3367777777777766653
No 287
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=54.51 E-value=83 Score=25.30 Aligned_cols=28 Identities=14% Similarity=0.056 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHHcCCccccccCCC
Q 029199 151 PEDSHVHASYAGFLWETEEDNDECDAPS 178 (197)
Q Consensus 151 p~~~~~~~~la~~~~~~g~~~ea~~~~~ 178 (197)
-.+|+.+..+|..|.+.+++.+|+..|-
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 3588999999999999999999987764
No 288
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=54.03 E-value=36 Score=20.93 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 029199 89 NYAQFLYQSKQDLPKAEEYYSRAILADPGDGEILS 123 (197)
Q Consensus 89 ~la~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 123 (197)
.+|..+.. .|++++|..+|-+|+...|+-...+.
T Consensus 22 ~~GE~L~~-~g~~~~~~~hf~nAl~Vc~qP~~LL~ 55 (73)
T 3ax2_A 22 QLGEELLA-QGDYEKGVDHLTNAIAVCGQPQQLLQ 55 (73)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred HHHHHHHH-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 46877777 89999999999999999987766543
No 289
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=53.62 E-value=24 Score=22.98 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 029199 89 NYAQFLYQSKQDLPKAEEYYSRAILADP 116 (197)
Q Consensus 89 ~la~~l~~~~g~~~~A~~~~~~al~l~P 116 (197)
.+|..+.. .|+++.|+.+|-+|+...|
T Consensus 25 ~lGE~L~~-~g~~e~av~Hf~nAl~Vc~ 51 (95)
T 1om2_A 25 QLGEELLA-QGDYEKGVDHLTNAIAVCG 51 (95)
T ss_dssp HHHHHHHH-HTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHH-CCCHHHHHHHHHHHHHHcC
Confidence 34444444 4555555555555554444
No 290
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=52.47 E-value=45 Score=24.53 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=19.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHH
Q 029199 61 GSGGDSQGVEEYYKKMVEENPGNPL 85 (197)
Q Consensus 61 ~~~g~~~~A~~~~~~al~~~P~~~~ 85 (197)
+..+++.+|.+.+..|++..|....
T Consensus 25 ~~~~~y~~A~~~L~~A~~~~~~~~~ 49 (203)
T 3t5x_A 25 MFDSDFKQAEEYLSFAFEHCHRSSQ 49 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHhCHHHHHHHHHHHHHHCCHhHH
Confidence 3458889999999999988887643
No 291
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=50.78 E-value=26 Score=30.85 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=41.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccc
Q 029199 124 QYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDE 173 (197)
Q Consensus 124 ~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea 173 (197)
..|...+..| ++.-|.+....++..+|+|..+..-++.+|.++|...+.
T Consensus 454 ~~a~~~~~~g-~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~~ 502 (658)
T 2cfu_A 454 EQARASYARG-EYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAEN 502 (658)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 3445556656 699999999999999999999999999999999877663
No 292
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=50.11 E-value=60 Score=27.28 Aligned_cols=88 Identities=3% Similarity=-0.037 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCH------------H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC----------C
Q 029199 64 GDSQGVEEYYKKMVEENPGNP------------L----FLSNYAQFLYQSKQDLPKAEEYYSRAILADP----------G 117 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~------------~----~~~~la~~l~~~~g~~~~A~~~~~~al~l~P----------~ 117 (197)
...+++...+.++...--+|- . ..+++-.+|++ .++..-+...++..-...+ .
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFk-l~~~~lckni~k~i~~~~~~p~~~~~p~~q 218 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFR-IESPQLCSNIFKNFQPKSMLAHFNEYQLDQ 218 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHH-SSCCTTHHHHHHTHHHHCCCSCGGGSCHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHH-cCCHHHHHHHHHHhccCCCCcChhhCCccc
Confidence 456888888888887732211 1 12234456666 8999888888865533322 2
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Q 029199 118 DGEILSQYAKLVWELHNDQDRAATYYERAVHA-SPED 153 (197)
Q Consensus 118 ~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~-~p~~ 153 (197)
-...+|.+|.++...+ ++.+|.+++..|++. .|.+
T Consensus 219 ~v~Y~YYlGr~~~~~~-~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 219 QIEYRYLLGRYYLLNS-QVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHCC
T ss_pred eEeeeHHHHHHHHHHc-cHHHHHHHHHHHHHhcCCcc
Confidence 2367788899888755 699999999999998 7765
No 293
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=50.01 E-value=36 Score=22.04 Aligned_cols=27 Identities=19% Similarity=0.007 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029199 86 FLSNYAQFLYQSKQDLPKAEEYYSRAIL 113 (197)
Q Consensus 86 ~~~~la~~l~~~~g~~~~A~~~~~~al~ 113 (197)
.+-.++..+.. .|+|++|+++.+++..
T Consensus 17 ~~~RrAe~ll~-~gkydeAIech~kAa~ 43 (97)
T 2crb_A 17 QQSRRADRLLA-AGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 34456656666 8899999888877764
No 294
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.94 E-value=17 Score=24.56 Aligned_cols=18 Identities=6% Similarity=-0.005 Sum_probs=11.0
Q ss_pred CCHHHHHHHHHHHHHhCC
Q 029199 64 GDSQGVEEYYKKMVEENP 81 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P 81 (197)
..+++|..++.++|++|-
T Consensus 17 ~~h~~AF~~Is~AL~~DE 34 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDE 34 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 345666666666666653
No 295
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=45.82 E-value=35 Score=31.43 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=17.1
Q ss_pred HhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 029199 78 EENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRA 111 (197)
Q Consensus 78 ~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~a 111 (197)
.--|.++..-+-+|.++.. .|++++|..+|++|
T Consensus 834 ~~~~~t~~~~yv~gr~~L~-~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 834 GWLNSDPIAVYLKALIYLK-SKEAVKAVRCFKTT 866 (950)
T ss_dssp GGCCSSHHHHHHHHHHHHH-TTCHHHHHHHHHTC
T ss_pred hhcCCChHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 3444555444555544444 55555555555554
No 296
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=43.64 E-value=46 Score=21.55 Aligned_cols=27 Identities=15% Similarity=0.069 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 029199 121 ILSQYAKLVWELHNDQDRAATYYERAVH 148 (197)
Q Consensus 121 ~~~~lg~~l~~~~~~~~~A~~~~~~al~ 148 (197)
.+...+..+...|+ |++|+++.++|..
T Consensus 17 ~~~RrAe~ll~~gk-ydeAIech~kAa~ 43 (97)
T 2crb_A 17 QQSRRADRLLAAGK-YEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCC-HHHHHHHHHHHHH
Confidence 34556677777675 9999888777763
No 297
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=41.52 E-value=12 Score=23.71 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 029199 100 DLPKAEEYYSRAILADPGDGEILSQY 125 (197)
Q Consensus 100 ~~~~A~~~~~~al~l~P~~~~~~~~l 125 (197)
...+++..-.++|+.+|+||.++-.+
T Consensus 25 ~~~~~v~~Ai~~L~~~PsnPa~LAey 50 (85)
T 2ca5_A 25 TLQGELTLALDKLAKNPSNPQLLAEY 50 (85)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34444455555555666666654443
No 298
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=39.25 E-value=42 Score=17.48 Aligned_cols=13 Identities=23% Similarity=0.258 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 029199 101 LPKAEEYYSRAIL 113 (197)
Q Consensus 101 ~~~A~~~~~~al~ 113 (197)
+++|...|+.+|+
T Consensus 18 yDKAVaSfk~alk 30 (37)
T 3s6n_M 18 YDKAVASFKHALK 30 (37)
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444443
No 299
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=36.67 E-value=1.3e+02 Score=22.32 Aligned_cols=79 Identities=9% Similarity=0.053 Sum_probs=59.4
Q ss_pred HHHHHHHHh---------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHH
Q 029199 71 EYYKKMVEE---------NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD--PGDGEILSQYAKLVWELHNDQDRA 139 (197)
Q Consensus 71 ~~~~~al~~---------~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~l~~~~~~~~~A 139 (197)
..++++++. ||....+|..++..+ . .+....+.+.|.-..... -..+..+...|..+-..| ++++|
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~-~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g-~~~~A 134 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-L-SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQ-FFLEA 134 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-S-TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTT-CHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-c-ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcC-CHHHH
Confidence 577777763 455566788777443 2 455778889988877654 567788888888888877 59999
Q ss_pred HHHHHHHHHhCCC
Q 029199 140 ATYYERAVHASPE 152 (197)
Q Consensus 140 ~~~~~~al~~~p~ 152 (197)
.+.|+.+++..-.
T Consensus 135 ~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 135 KVLLELGAENNCR 147 (202)
T ss_dssp HHHHHHHHHTTCB
T ss_pred HHHHHHHHHcCCc
Confidence 9999999998754
No 300
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=36.65 E-value=56 Score=21.17 Aligned_cols=32 Identities=6% Similarity=0.124 Sum_probs=24.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 029199 124 QYAKLVWELHNDQDRAATYYERAVHASPEDSHV 156 (197)
Q Consensus 124 ~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~ 156 (197)
.+|-.+...|. ++.|+.+|-+|+...|.....
T Consensus 25 ~lGE~L~~~g~-~e~av~Hf~nAl~Vc~qP~~L 56 (95)
T 1om2_A 25 QLGEELLAQGD-YEKGVDHLTNAIAVCGQPQQL 56 (95)
T ss_dssp HHHHHHHHHTC-HHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHCCC-HHHHHHHHHHHHHHcCCHHHH
Confidence 46777777674 888888888888888864444
No 301
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=36.38 E-value=70 Score=19.80 Aligned_cols=33 Identities=12% Similarity=0.026 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029199 65 DSQGVEEYYKKMVEENPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAIL 113 (197)
Q Consensus 65 ~~~~A~~~~~~al~~~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~ 113 (197)
-.+.|+....+|++. ...|++++|+.+|..+++
T Consensus 9 ~l~~A~~l~~~Av~~----------------D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 9 FLTKGIELVQKAIDL----------------DTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHHH----------------HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----------------HHcCCHHHHHHHHHHHHH
Confidence 356777777777543 225666666666666555
No 302
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=32.33 E-value=1.9e+02 Score=22.89 Aligned_cols=86 Identities=8% Similarity=-0.106 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHHcC-C--
Q 029199 80 NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD---------------------PGDGEILSQYAKLVWELHN-D-- 135 (197)
Q Consensus 80 ~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~---------------------P~~~~~~~~lg~~l~~~~~-~-- 135 (197)
.|.....+..++.+-+...++...|...|+.-.+.. |..|.+.+.. .++....+ .
T Consensus 183 ~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~p~~pllnF~~-lLl~t~e~~~~~ 261 (312)
T 2wpv_A 183 EDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERFIEKFHPKYEKIDKNGYEIVFFEDYSDLNFLQ-LLLITCQTKDKS 261 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHCCCEEEEEETTEEEEEESSCHHHHHHH-HHHHHHHHTCHH
T ss_pred CcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcccccccccccccCCCCCCCCccHHHHH-HHHHHHhcCCHH
Confidence 344456666677555555799999988877654331 4444433322 12222221 2
Q ss_pred -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 029199 136 -QDRAATYYERAVHASPEDSHVHASYAGFLWETEE 169 (197)
Q Consensus 136 -~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 169 (197)
|..-.+.|...|+ ........+|.+|+....
T Consensus 262 lF~~L~~~Y~~~L~---~~~~~L~~Ig~~yFgi~~ 293 (312)
T 2wpv_A 262 YFLNLKNHYLDFSQ---AYKSELEFLGQEYFNIVA 293 (312)
T ss_dssp HHHHHHHHCHHHHH---HTHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCC
Confidence 3344445555555 345566667777775543
No 303
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=29.46 E-value=50 Score=30.63 Aligned_cols=112 Identities=10% Similarity=0.012 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHHHHhCCC------CH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPG------NP----LFLSNYAQFLYQSKQDLPKAEEYYSRAILADPGDG--EILSQYAKLVWE 131 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~------~~----~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~lg~~l~~ 131 (197)
|...+++..+...+.-+.. +. .+-..||.++.. .+ .+++.+.+...+.-+.... .+-+.+|.++..
T Consensus 425 g~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~G-S~-~eev~e~L~~~L~dd~~~~~~~AalALGli~vG 502 (963)
T 4ady_A 425 GFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMG-SA-NIEVYEALKEVLYNDSATSGEAAALGMGLCMLG 502 (963)
T ss_dssp TTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTT-CC-CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcC-CC-CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc
Confidence 3334678888887765430 12 234456633333 33 3567788888876443211 344556666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHcCCccccccCCCcc
Q 029199 132 LHNDQDRAATYYERAVHASPEDSHVHASY--AGFLWETEEDNDECDAPSEL 180 (197)
Q Consensus 132 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l--a~~~~~~g~~~ea~~~~~~~ 180 (197)
.+. .++++.+-..+.-+. +..+...+ |.-+...|+.+.+....+.+
T Consensus 503 Tgn--~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L 550 (963)
T 4ady_A 503 TGK--PEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKM 550 (963)
T ss_dssp CCC--HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHH
T ss_pred cCC--HHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHH
Confidence 563 455555444333222 33443333 33344678877765555554
No 304
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=29.13 E-value=1e+02 Score=21.71 Aligned_cols=77 Identities=10% Similarity=0.206 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCH
Q 029199 69 VEEYYKKMVEEN---------PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD---PGDGEILSQYAKLVWELHNDQ 136 (197)
Q Consensus 69 A~~~~~~al~~~---------P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~---P~~~~~~~~lg~~l~~~~~~~ 136 (197)
-...++++++.. |....+|..++.. ..+ +.+.|.-..... - .+..+...|..+-..| ++
T Consensus 47 l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~----~~d---p~~if~~L~~~~IG~~-~AlfYe~wA~~lE~~g-~~ 117 (152)
T 4a1g_A 47 LITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEY----NSD---LHQFFEFLYNHGIGTL-SSPLYIAWAGHLEAQG-EL 117 (152)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTT----BSC---HHHHHHHHHTTTTTTT-BHHHHHHHHHHHHHTT-CH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHh----cCC---HHHHHHHHHHCCCcHH-HHHHHHHHHHHHHHcC-CH
Confidence 446667776643 3334455555521 223 566666655431 1 2566777888877766 49
Q ss_pred HHHHHHHHHHHHhCCCCH
Q 029199 137 DRAATYYERAVHASPEDS 154 (197)
Q Consensus 137 ~~A~~~~~~al~~~p~~~ 154 (197)
++|.+.|+.+++......
T Consensus 118 ~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 118 QHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHHHcCCccH
Confidence 999999999999875533
No 305
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=28.52 E-value=61 Score=20.11 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=17.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh
Q 029199 89 NYAQFLYQSKQDLPKAEEYYSRAILA 114 (197)
Q Consensus 89 ~la~~l~~~~g~~~~A~~~~~~al~l 114 (197)
.+|.-+.. .|+|+.|+.+|+.+++.
T Consensus 17 k~ARe~Al-~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 17 KLAREYAL-LGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hcChHHHHHHHHHHHHH
Confidence 45555555 78888888888887764
No 306
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=26.40 E-value=85 Score=23.76 Aligned_cols=62 Identities=10% Similarity=0.140 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHH-------HHHHHH-HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 029199 66 SQGVEEYYKKMVEENPGNPLF-------LSNYAQ-FLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKL 128 (197)
Q Consensus 66 ~~~A~~~~~~al~~~P~~~~~-------~~~la~-~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~ 128 (197)
++.|+-.++..-+..|-+... ...-+- ++.+ .|.|++|.+.+++.+..+|.+-.....+..+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCie-k~~f~kA~eiLkr~~~~~~s~~kLr~kL~~I 157 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIK-NKEFEKASKILKKHMSKDPTTQKLRNDLLNI 157 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHSTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 466777666665555433222 111122 3333 6778888888888877666555555555544
No 307
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=26.34 E-value=1.6e+02 Score=27.31 Aligned_cols=46 Identities=13% Similarity=0.046 Sum_probs=23.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHH----HHHHHHHHcCCHHHHHH-HHHHHH
Q 029199 98 KQDLPKAEEYYSRAILADPGDGEILSQ----YAKLVWELHNDQDRAAT-YYERAV 147 (197)
Q Consensus 98 ~g~~~~A~~~~~~al~l~P~~~~~~~~----lg~~l~~~~~~~~~A~~-~~~~al 147 (197)
.|+.+.+....+.... + .++.+.+. +|..|...|. .+|++ .+..+.
T Consensus 537 ~g~~e~~~~li~~L~~-~-~dp~vRygaa~alglAyaGTGn--~~aIq~LL~~~~ 587 (963)
T 4ady_A 537 YGRQELADDLITKMLA-S-DESLLRYGGAFTIALAYAGTGN--NSAVKRLLHVAV 587 (963)
T ss_dssp TTCGGGGHHHHHHHHH-C-SCHHHHHHHHHHHHHHTTTSCC--HHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHh-C-CCHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHhc
Confidence 4666655555554443 2 35555544 3444556563 46666 444443
No 308
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=26.11 E-value=1.1e+02 Score=20.79 Aligned_cols=70 Identities=7% Similarity=0.088 Sum_probs=42.5
Q ss_pred HHHHhcCCHHHHHHHHHHH---HHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHc
Q 029199 93 FLYQSKQDLPKAEEYYSRA---ILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPED--SHVHASYAGFLWET 167 (197)
Q Consensus 93 ~l~~~~g~~~~A~~~~~~a---l~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~ 167 (197)
+++. .++.++.+..++.. ++..|... .... +....|+++.+|.+++++..+..... -.+|..+-.++.+.
T Consensus 49 lyf~-~~n~~~m~~~L~pLh~~l~~~PeT~---~E~s-F~~~fG~~L~~A~~~~~~y~~t~d~~~lnqAWd~Y~~Vf~rI 123 (126)
T 2npu_A 49 LYFG-ERNVKGMFEVLEPLHAMMERGPQTL---KETS-FNQAYGRDLMEAQEWCRKYMKSGNVKDLTQAWDLYYHVFRRI 123 (126)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHHHHSCCCH---HHHH-HHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhc-ccCHHHHHHHHHHHHHHHccCCCCH---HHHH-HHHHHhHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHH
Confidence 3345 67888888777665 44456553 2222 33334667889999999987544221 25666666666554
No 309
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=25.95 E-value=1.2e+02 Score=21.58 Aligned_cols=33 Identities=9% Similarity=0.195 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 029199 119 GEILSQYAKLVWELHNDQDRAATYYERAVHASPE 152 (197)
Q Consensus 119 ~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~ 152 (197)
+..+...|..+-..| ++.+|.+.|+.+++....
T Consensus 96 AlfY~~wA~~lE~~~-~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 96 AQFYISWAEEYEARE-NFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCC
Confidence 556667777766655 488888888888887644
No 310
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=25.92 E-value=1.2e+02 Score=19.51 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 029199 64 GDSQGVEEYYKKMVEENPGNPLFLSNYA 91 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~P~~~~~~~~la 91 (197)
++...+++.-.++++.+|+||.++..+-
T Consensus 30 ~~~~~~l~~Al~~L~~~psNPa~LAe~Q 57 (92)
T 2g0u_A 30 KDLNKQLQDAQANLTKNPSDPTALANYQ 57 (92)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4445555555556666777777655443
No 311
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=25.90 E-value=1.5e+02 Score=19.66 Aligned_cols=73 Identities=8% Similarity=-0.113 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccCCCc
Q 029199 100 DLPKAEEYYSRAILADPGDGEILSQYAKLVWELHNDQDRAATYYERAVHASPEDSHVHASYAGFLWETEEDNDECDAPSE 179 (197)
Q Consensus 100 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ea~~~~~~ 179 (197)
..++|... -..|...++..-+.......+...| +|++|....+.. + .|++--.++.|-.++|-.++++..+-+
T Consensus 21 ~HqEA~tI-AdwL~~~~~~E~v~lIR~sSLmNrG-~Yq~Al~l~~~~----c-~pdlepw~ALce~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 21 CHEEALCI-AEWLERLGQDEAARLIRISSLANQG-RYQEALAFAHGN----P-WPALEPWFALCEWHLGLGAALDRRLAG 93 (115)
T ss_dssp CHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHTT-CHHHHHGGGTTC----C-CGGGHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHhCCcHHHHHHHHHHHHHcch-hHHHHHHhcCCC----C-CchHHHHHHHHHHhcccHHHHHHHHHH
Confidence 55666544 4556667774445555555667756 588887765543 2 566777778888888888887655533
No 312
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=24.78 E-value=74 Score=18.94 Aligned_cols=18 Identities=11% Similarity=0.147 Sum_probs=12.1
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 029199 128 LVWELHNDQDRAATYYER 145 (197)
Q Consensus 128 ~l~~~~~~~~~A~~~~~~ 145 (197)
+|...++|+++|+.++++
T Consensus 30 AL~e~~GDi~~Ai~~Lr~ 47 (64)
T 2cp9_A 30 ALETCGGDLKQAEIWLHK 47 (64)
T ss_dssp HHHHHTSCHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHH
Confidence 355556677888777764
No 313
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=23.96 E-value=2.2e+02 Score=21.01 Aligned_cols=52 Identities=15% Similarity=0.189 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 029199 64 GDSQGVEEYYKKMVEE--NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILADP 116 (197)
Q Consensus 64 g~~~~A~~~~~~al~~--~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~P 116 (197)
+....+...|..+... --..+..|..+|.++-. .|++.+|...|+..++..-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~-~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLEN-AQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTC
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCC
Confidence 4456777888777654 46678888899966666 9999999999999998763
No 314
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=23.10 E-value=3.3e+02 Score=22.68 Aligned_cols=48 Identities=13% Similarity=0.119 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 029199 66 SQGVEEYYKKMVEENPGN-----------PLFLSNYAQFLYQSKQDLPKAEEYYSRAILA 114 (197)
Q Consensus 66 ~~~A~~~~~~al~~~P~~-----------~~~~~~la~~l~~~~g~~~~A~~~~~~al~l 114 (197)
++.-++.+++|+..-|.. ..++..+|.++.. .+++++|+...++++..
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~-~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLY-ARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhc
Confidence 344555666666655432 3456667777776 78888888888888764
No 315
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=22.35 E-value=2.1e+02 Score=20.26 Aligned_cols=34 Identities=15% Similarity=0.257 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 029199 81 PGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAILAD 115 (197)
Q Consensus 81 P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~l~ 115 (197)
-..+..|...|.++-. .|++.+|...|+..++..
T Consensus 93 ~~~AlfY~~wA~~lE~-~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 93 VSLAQFYISWAEEYEA-RENFRKADAIFQEGIQQK 126 (164)
T ss_dssp TTBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcC
Confidence 4456666677755554 778888888888888765
No 316
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=21.64 E-value=59 Score=18.54 Aligned_cols=20 Identities=0% Similarity=-0.099 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHHhCCCCH
Q 029199 65 DSQGVEEYYKKMVEENPGNP 84 (197)
Q Consensus 65 ~~~~A~~~~~~al~~~P~~~ 84 (197)
..+-|++|++.+..++|++.
T Consensus 29 SleVAiqCi~~aF~v~~~d~ 48 (52)
T 4gof_A 29 SLEVAIQCLETAFGVTVEDS 48 (52)
T ss_dssp HHHHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHcCCCcccc
Confidence 35778899999998888764
No 317
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=21.35 E-value=1.6e+02 Score=18.53 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=11.8
Q ss_pred CCHHHHHHHHHHHHHhC
Q 029199 64 GDSQGVEEYYKKMVEEN 80 (197)
Q Consensus 64 g~~~~A~~~~~~al~~~ 80 (197)
.-.+.|+..+.+|++.|
T Consensus 10 ~~l~~Ai~lv~~Ave~D 26 (93)
T 1wfd_A 10 SDSTAAVAVLKRAVELD 26 (93)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34567888888886663
No 318
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=20.49 E-value=2.4e+02 Score=23.23 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=31.7
Q ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 029199 69 VEEYYKKMVEE-----NPGNPLFLSNYAQFLYQSKQDLPKAEEYYSRAIL 113 (197)
Q Consensus 69 A~~~~~~al~~-----~P~~~~~~~~la~~l~~~~g~~~~A~~~~~~al~ 113 (197)
++..|.+++.. +..+.--+.-+|..+++ .+++.+|+..+..|-.
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR-~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYR-KKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhh-cchHHHHHHHHHHHHH
Confidence 67778887764 33444455567778887 9999999999876643
No 319
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=25.91 E-value=21 Score=31.59 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=29.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 029199 91 AQFLYQSKQDLPKAEEYYSRAILADPGDGEILSQYAKLVWELHN 134 (197)
Q Consensus 91 a~~l~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~l~~~~~ 134 (197)
+.-.+. .|++.-|.++.+.++..+|+|..+...++.+|.+++.
T Consensus 468 a~~~~~-~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~ 510 (668)
T 2yhe_A 468 MRAAID-KGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGY 510 (668)
Confidence 333344 5677777777777777777777777777777766663
Done!