BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029200
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OQU|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl9
With Aba
pdb|3OQU|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl9
With Aba
Length = 205
Score = 295 bits (756), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 139/180 (77%), Positives = 161/180 (89%), Gaps = 1/180 (0%)
Query: 14 GSGGFGKIEE-DYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVS 72
G+ +G +E Y++ HH+H ++QC+S+LVKHIKAP+HLVWSLVRRFDQPQKYKPFVS
Sbjct: 26 GTAMYGGLETVQYVRTHHQHLCRENQCTSALVKHIKAPLHLVWSLVRRFDQPQKYKPFVS 85
Query: 73 RCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVT 132
RC V GD +IGS+REVNVKSGLPATTSTERLELLDDEEHI G++I+GGDHRLKNYSSI+T
Sbjct: 86 RCTVIGDPEIGSLREVNVKSGLPATTSTERLELLDDEEHILGIKIIGGDHRLKNYSSILT 145
Query: 133 VHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLAVQDRTE 192
VHPE+I+GR GT+VIESFVVDVP GNTKDETCYFVEALI+CNLKSLADVSE LA QD T+
Sbjct: 146 VHPEIIEGRAGTMVIESFVVDVPQGNTKDETCYFVEALIRCNLKSLADVSERLASQDITQ 205
>pdb|3UQH|A Chain A, Crystal Strcuture Of Aba Receptor Pyl10 (Apo)
pdb|3UQH|B Chain B, Crystal Strcuture Of Aba Receptor Pyl10 (Apo)
pdb|3R6P|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl10
Length = 191
Score = 273 bits (697), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 124/176 (70%), Positives = 154/176 (87%), Gaps = 1/176 (0%)
Query: 20 KIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGD 79
K+E +YIK+HH+H++ + QCSS+LVKHIKAP+HLVWS+VRRFD+PQKYKPF+SRC+VQG
Sbjct: 8 KVESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGK 67
Query: 80 -LQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVTVHPEVI 138
L++GSVREV++KSGLPAT STE LE+LDD EHI G+RIVGGDHRLKNYSS +++H E I
Sbjct: 68 KLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTISLHSETI 127
Query: 139 DGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLAVQDRTEPI 194
DG+ GTL IESFVVDVP+GNTK+ETC+FVEALI+CNL SLADV+E L + + I
Sbjct: 128 DGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADVTERLQAESMEKKI 183
>pdb|3RT2|A Chain A, Crystal Structure Of Apo-Pyl10
Length = 183
Score = 272 bits (696), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 124/176 (70%), Positives = 154/176 (87%), Gaps = 1/176 (0%)
Query: 20 KIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGD 79
K+E +YIK+HH+H++ + QCSS+LVKHIKAP+HLVWS+VRRFD+PQKYKPF+SRC+VQG
Sbjct: 8 KVESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGK 67
Query: 80 -LQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVTVHPEVI 138
L++GSVREV++KSGLPAT STE LE+LDD EHI G+RIVGGDHRLKNYSS +++H E I
Sbjct: 68 KLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTISLHSETI 127
Query: 139 DGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLAVQDRTEPI 194
DG+ GTL IESFVVDVP+GNTK+ETC+FVEALI+CNL SLADV+E L + + I
Sbjct: 128 DGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADVTERLQAESMEKKI 183
>pdb|3RT0|C Chain C, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
pdb|3RT0|D Chain D, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
Length = 183
Score = 269 bits (688), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 123/176 (69%), Positives = 153/176 (86%), Gaps = 1/176 (0%)
Query: 20 KIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGD 79
K+E +YIK+HH+H++ + QCSS+LVKHIKAP+HLVWS+VRRFD+PQKYKPF+SRC+VQG
Sbjct: 8 KVESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGK 67
Query: 80 -LQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVTVHPEVI 138
L++GSVREV++KSGLPAT STE LE+LDD EHI G+RIVGGDHRLKNYSS +++H E I
Sbjct: 68 KLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTISLHSETI 127
Query: 139 DGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLAVQDRTEPI 194
DG+ GTL IESFVVDVP+GNTK+ETC+FVEALI+ NL SLADV+E L + + I
Sbjct: 128 DGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQSNLNSLADVTERLQAESMEKKI 183
>pdb|3QRZ|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
pdb|3QRZ|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
pdb|3QRZ|C Chain C, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
Length = 223
Score = 176 bits (446), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 87/158 (55%), Positives = 116/158 (73%), Gaps = 5/158 (3%)
Query: 24 DYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC-IVQGD-LQ 81
+++ HH HDV QC SS+V+ I AP VW+LVRRFD P+ YK F+ +C IVQGD L
Sbjct: 63 EHVAMHHTHDVGPDQCCSSVVQMIHAPPESVWALVRRFDNPKVYKNFIRQCRIVQGDGLH 122
Query: 82 IGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVTVHPEVIDGR 141
+G +REV V SGLPA +STERLE+LD+E H+ +VGGDHRLKNY S+ T+H
Sbjct: 123 VGDLREVMVVSGLPAVSSTERLEILDEERHVISFSVVGGDHRLKNYRSVTTLH---ASDD 179
Query: 142 PGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA 179
GT+V+ES++VDVP GNT++ET FV+ +++CNL+SLA
Sbjct: 180 EGTVVVESYIVDVPPGNTEEETLSFVDTIVRCNLQSLA 217
>pdb|3ZVU|A Chain A, Structure Of The Pyr1 His60pro Mutant In Complex With The
Hab1 Phosphatase And Abscisic Acid
Length = 193
Score = 165 bits (418), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 114/166 (68%), Gaps = 2/166 (1%)
Query: 23 EDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGD--L 80
++ I H + + CSS + I AP LVWS+VRRFD+PQ YKPF+ C V+ + +
Sbjct: 16 KNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKPFIKSCSVEQNFEM 75
Query: 81 QIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVTVHPEVIDG 140
++G R+V V SGLPA TSTERL++LDDE + G I+GG+HRL NY S+ TVH +
Sbjct: 76 RVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRFEKEN 135
Query: 141 RPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLA 186
R T+V+ES+VVD+P+GN++D+T F + ++K NL+ LA V+E +A
Sbjct: 136 RIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEAMA 181
>pdb|3NJ1|A Chain A, X-Ray Crystal Structure Of The Pyl2(V114i)-Pyrabactin A
Complex
Length = 193
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 118/174 (67%), Gaps = 5/174 (2%)
Query: 20 KIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC-IVQG 78
K E IK +H+ + C+S + + I AP +VW L+RRFD P++YK FV RC ++ G
Sbjct: 19 KTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISG 78
Query: 79 DLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVTVHPEVI 138
D +GSVREV V SGLPA+TSTERLE +DD+ + RIVGG+HRLKNY S+ +V+ E +
Sbjct: 79 DGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRIVGGEHRLKNYKSVTSVN-EFL 137
Query: 139 D---GRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLAVQD 189
+ G+ T+V+ES+ VD+P+GNT+++T FV+ ++K NL+ L + + D
Sbjct: 138 NQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSAPMHD 191
>pdb|3NMH|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
Length = 178
Score = 161 bits (408), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 119/178 (66%), Gaps = 5/178 (2%)
Query: 16 GGFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC- 74
G K E IK +H+ + C+S + + I AP +VW L+RRFD P++YK FV RC
Sbjct: 1 GSEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCR 60
Query: 75 IVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVTVH 134
++ GD +GSVREV V SGLPA+TSTERLE +DD+ + R+VGG+HRLKNY S+ +V+
Sbjct: 61 LISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVN 120
Query: 135 PEVID---GRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLAVQD 189
E ++ G+ T+V+ES+ VD+P+GNT+++T FV+ ++K NL+ L + + D
Sbjct: 121 -EFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSAPMHD 177
>pdb|3UJL|A Chain A, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 177
Score = 161 bits (408), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 119/178 (66%), Gaps = 5/178 (2%)
Query: 16 GGFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC- 74
G K E IK +H+ + C+S + + I AP +VW L+RRFD P++YK FV RC
Sbjct: 1 GSEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCR 60
Query: 75 IVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVTVH 134
++ GD +GSVREV V SGLPA+TSTERLE +DD+ + R+VGG+HRLKNY S+ +V+
Sbjct: 61 LISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVN 120
Query: 135 PEVID---GRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLAVQD 189
E ++ G+ T+V+ES+ VD+P+GNT+++T FV+ ++K NL+ L + + D
Sbjct: 121 -EFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSAPMHD 177
>pdb|3KDH|A Chain A, Structure Of Ligand-Free Pyl2
pdb|3KDH|B Chain B, Structure Of Ligand-Free Pyl2
pdb|3KDH|C Chain C, Structure Of Ligand-Free Pyl2
pdb|3KDI|A Chain A, Structure Of (+)-Aba Bound Pyl2
pdb|3NR4|A Chain A, Pyrabactin-Bound Pyl2
pdb|3NR4|B Chain B, Pyrabactin-Bound Pyl2
pdb|3NR4|C Chain C, Pyrabactin-Bound Pyl2
pdb|3NS2|A Chain A, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|B Chain B, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|C Chain C, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3KL1|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
pdb|3KL1|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
Length = 190
Score = 161 bits (407), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 118/174 (67%), Gaps = 5/174 (2%)
Query: 20 KIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC-IVQG 78
K E IK +H+ + C+S + + I AP +VW L+RRFD P++YK FV RC ++ G
Sbjct: 16 KTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISG 75
Query: 79 DLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVTVHPEVI 138
D +GSVREV V SGLPA+TSTERLE +DD+ + R+VGG+HRLKNY S+ +V+ E +
Sbjct: 76 DGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVN-EFL 134
Query: 139 D---GRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLAVQD 189
+ G+ T+V+ES+ VD+P+GNT+++T FV+ ++K NL+ L + + D
Sbjct: 135 NQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSAPMHD 188
>pdb|3NJ0|A Chain A, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|B Chain B, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|C Chain C, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
Length = 193
Score = 161 bits (407), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 118/174 (67%), Gaps = 5/174 (2%)
Query: 20 KIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC-IVQG 78
K E IK +H+ + C+S + + I AP +VW L+RRFD P++YK FV RC ++ G
Sbjct: 19 KTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISG 78
Query: 79 DLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVTVHPEVI 138
D +GSVREV V SGLPA+TSTERLE +DD+ + R+VGG+HRLKNY S+ +V+ E +
Sbjct: 79 DGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVN-EFL 137
Query: 139 D---GRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLAVQD 189
+ G+ T+V+ES+ VD+P+GNT+++T FV+ ++K NL+ L + + D
Sbjct: 138 NQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSAPMHD 191
>pdb|3KAZ|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|C Chain C, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KB0|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2
pdb|3KB3|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 176
Score = 161 bits (407), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 118/174 (67%), Gaps = 5/174 (2%)
Query: 20 KIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC-IVQG 78
K E IK +H+ + C+S + + I AP +VW L+RRFD P++YK FV RC ++ G
Sbjct: 4 KTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISG 63
Query: 79 DLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVTVHPEVI 138
D +GSVREV V SGLPA+TSTERLE +DD+ + R+VGG+HRLKNY S+ +V+ E +
Sbjct: 64 DGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVN-EFL 122
Query: 139 D---GRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLAVQD 189
+ G+ T+V+ES+ VD+P+GNT+++T FV+ ++K NL+ L + + D
Sbjct: 123 NQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSAPMHD 176
>pdb|3K90|A Chain A, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3K90|B Chain B, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3K90|C Chain C, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3K90|D Chain D, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3QN1|A Chain A, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
Complex With The Hab1 Type 2c Phosphatase Catalytic
Domain
Length = 193
Score = 160 bits (406), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 113/166 (68%), Gaps = 2/166 (1%)
Query: 23 EDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGD--L 80
++ I H + + CSS + I AP LVWS+VRRFD+PQ YK F+ C V+ + +
Sbjct: 16 KNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEM 75
Query: 81 QIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVTVHPEVIDG 140
++G R+V V SGLPA TSTERL++LDDE + G I+GG+HRL NY S+ TVH +
Sbjct: 76 RVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRFEKEN 135
Query: 141 RPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLA 186
R T+V+ES+VVD+P+GN++D+T F + ++K NL+ LA V+E +A
Sbjct: 136 RIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEAMA 181
>pdb|3K3K|A Chain A, Crystal Structure Of Dimeric Abscisic Acid (Aba) Receptor
Pyrabactin Resistance 1 (Pyr1) With Aba-Bound Closed-Lid
And Aba-Free Open-Lid Subunits
pdb|3K3K|B Chain B, Crystal Structure Of Dimeric Abscisic Acid (Aba) Receptor
Pyrabactin Resistance 1 (Pyr1) With Aba-Bound Closed-Lid
And Aba-Free Open-Lid Subunits
Length = 211
Score = 160 bits (405), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 113/166 (68%), Gaps = 2/166 (1%)
Query: 23 EDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGD--L 80
++ I H + + CSS + I AP LVWS+VRRFD+PQ YK F+ C V+ + +
Sbjct: 34 KNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEM 93
Query: 81 QIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVTVHPEVIDG 140
++G R+V V SGLPA TSTERL++LDDE + G I+GG+HRL NY S+ TVH +
Sbjct: 94 RVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRFEKEN 153
Query: 141 RPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLA 186
R T+V+ES+VVD+P+GN++D+T F + ++K NL+ LA V+E +A
Sbjct: 154 RIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEAMA 199
>pdb|3NMP|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMT|A Chain A, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
pdb|3NMV|A Chain A, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
Length = 178
Score = 159 bits (401), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 118/178 (66%), Gaps = 5/178 (2%)
Query: 16 GGFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC- 74
G K E IK +H+ + C+S + + I AP +VW L+RRFD P++YK FV RC
Sbjct: 1 GSEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCR 60
Query: 75 IVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVTVH 134
++ GD +GSVREV V SGLP +TSTERLE +DD+ + R+VGG+HRLKNY S+ +V+
Sbjct: 61 LISGDGDVGSVREVTVISGLPFSTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVN 120
Query: 135 PEVID---GRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLAVQD 189
E ++ G+ T+V+ES+ VD+P+GNT+++T FV+ ++K NL+ L + + D
Sbjct: 121 -EFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSAPMHD 177
>pdb|3NJO|A Chain A, X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Complex
pdb|3NJO|B Chain B, X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Complex
pdb|3NJO|C Chain C, X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Complex
Length = 194
Score = 157 bits (397), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 112/166 (67%), Gaps = 2/166 (1%)
Query: 23 EDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGD--L 80
++ I H + + CSS + I AP LVWS+VRRFD+PQ YK F+ C V+ + +
Sbjct: 17 KNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEM 76
Query: 81 QIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVTVHPEVIDG 140
++G R+V V SGL A TSTERL++LDDE + G I+GG+HRL NY S+ TVH +
Sbjct: 77 RVGCTRDVIVISGLSANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRFEKEN 136
Query: 141 RPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLA 186
R T+V+ES+VVD+P+GN++D+T F + ++K NL+ LA V+E +A
Sbjct: 137 RIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEAMA 182
>pdb|4DSB|A Chain A, Complex Structure Of Abscisic Acid Receptor Pyl3 With
(+)-Aba In Spacegroup Of I 212121 At 2.70a
pdb|4DSB|B Chain B, Complex Structure Of Abscisic Acid Receptor Pyl3 With
(+)-Aba In Spacegroup Of I 212121 At 2.70a
Length = 186
Score = 142 bits (359), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 109/168 (64%), Gaps = 11/168 (6%)
Query: 26 IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQ------GD 79
I+ HH + C+S + + AP H +W VR F P KYK F+ C ++ +
Sbjct: 14 IRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKE 73
Query: 80 LQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVTVHPEVI- 138
+++G++REV+V SGLPA+TS E LE+LD+E+ I R++GG+HRL NY S+ +V+ V+
Sbjct: 74 IKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVL 133
Query: 139 ----DGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVS 182
R ++V+ES++VD+P GNT+++T FV+ ++K NL++LA +S
Sbjct: 134 EKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLAVIS 181
>pdb|4DSC|A Chain A, Complex Structure Of Abscisic Acid Receptor Pyl3 With
(+)-Aba In Spacegroup Of H32 At 1.95a
pdb|4DSC|B Chain B, Complex Structure Of Abscisic Acid Receptor Pyl3 With
(+)-Aba In Spacegroup Of H32 At 1.95a
Length = 188
Score = 142 bits (359), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 109/168 (64%), Gaps = 11/168 (6%)
Query: 26 IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQ------GD 79
I+ HH + C+S + + AP H +W VR F P KYK F+ C ++ +
Sbjct: 16 IRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKE 75
Query: 80 LQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVTVHPEVI- 138
+++G++REV+V SGLPA+TS E LE+LD+E+ I R++GG+HRL NY S+ +V+ V+
Sbjct: 76 IKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVL 135
Query: 139 ----DGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVS 182
R ++V+ES++VD+P GNT+++T FV+ ++K NL++LA +S
Sbjct: 136 EKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLAVIS 183
>pdb|3OJI|A Chain A, X-Ray Crystal Structure Of The Py13 -Pyrabactin Complex
pdb|3OJI|B Chain B, X-Ray Crystal Structure Of The Py13 -Pyrabactin Complex
Length = 189
Score = 142 bits (359), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 109/168 (64%), Gaps = 11/168 (6%)
Query: 26 IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQ------GD 79
I+ HH + C+S + + AP H +W VR F P KYK F+ C ++ +
Sbjct: 17 IRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKE 76
Query: 80 LQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVTVHPEVI- 138
+++G++REV+V SGLPA+TS E LE+LD+E+ I R++GG+HRL NY S+ +V+ V+
Sbjct: 77 IKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVL 136
Query: 139 ----DGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVS 182
R ++V+ES++VD+P GNT+++T FV+ ++K NL++LA +S
Sbjct: 137 EKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLAVIS 184
>pdb|3KLX|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl3
pdb|3KLX|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl3
pdb|4DS8|A Chain A, Complex Structure Of Abscisic Acid Receptor
Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+
Length = 209
Score = 142 bits (357), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 109/168 (64%), Gaps = 11/168 (6%)
Query: 26 IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQ------GD 79
I+ HH + C+S + + AP H +W VR F P KYK F+ C ++ +
Sbjct: 37 IRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKE 96
Query: 80 LQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVTVHPEVI- 138
+++G++REV+V SGLPA+TS E LE+LD+E+ I R++GG+HRL NY S+ +V+ V+
Sbjct: 97 IKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVL 156
Query: 139 ----DGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVS 182
R ++V+ES++VD+P GNT+++T FV+ ++K NL++LA +S
Sbjct: 157 EKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLAVIS 204
>pdb|3KAY|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl1
pdb|3KAY|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl1
pdb|3NMN|A Chain A, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|C Chain C, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 178
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 112/165 (67%), Gaps = 5/165 (3%)
Query: 26 IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGD--LQIG 83
I H + + + +CSS L + I AP VWS+VRRFD+PQ YK F+ C V D +++G
Sbjct: 11 IAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVG 70
Query: 84 SVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVTVH---PEVIDG 140
R+VNV SGLPA TS ERL+LLDD+ + G I GG+HRL+NY S+ TVH E +
Sbjct: 71 CTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEEEEE 130
Query: 141 RPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHL 185
R T+V+ES+VVDVP+GN++++T F + +I+ NL+ LA ++E +
Sbjct: 131 RIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITEAM 175
>pdb|3JRS|A Chain A, Crystal Structure Of (+)-Aba-Bound Pyl1
pdb|3JRS|B Chain B, Crystal Structure Of (+)-Aba-Bound Pyl1
pdb|3JRS|C Chain C, Crystal Structure Of (+)-Aba-Bound Pyl1
Length = 208
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 112/165 (67%), Gaps = 5/165 (3%)
Query: 26 IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGD--LQIG 83
I H + + + +CSS L + I AP VWS+VRRFD+PQ YK F+ C V D +++G
Sbjct: 41 IAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVG 100
Query: 84 SVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVTVH---PEVIDG 140
R+VNV SGLPA TS ERL+LLDD+ + G I GG+HRL+NY S+ TVH E +
Sbjct: 101 CTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEEEEE 160
Query: 141 RPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHL 185
R T+V+ES+VVDVP+GN++++T F + +I+ NL+ LA ++E +
Sbjct: 161 RIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITEAM 205
>pdb|3JRQ|B Chain B, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 186
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 112/165 (67%), Gaps = 5/165 (3%)
Query: 26 IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGD--LQIG 83
I H + + + +CSS L + I AP VWS+VRRFD+PQ YK F+ C V D +++G
Sbjct: 20 IAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVG 79
Query: 84 SVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVTVH---PEVIDG 140
R+VNV SGLPA TS ERL+LLDD+ + G I GG+HRL+NY S+ TVH E +
Sbjct: 80 CTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEEEEE 139
Query: 141 RPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHL 185
R T+V+ES+VVDVP+GN++++T F + +I+ NL+ LA ++E +
Sbjct: 140 RIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITEAM 184
>pdb|3KDJ|A Chain A, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
pdb|3NEF|A Chain A, High-Resolution Pyrabactin-Bound Pyl1 Structure
pdb|3NEF|B Chain B, High-Resolution Pyrabactin-Bound Pyl1 Structure
pdb|3NEG|A Chain A, Pyrabactin-Bound Pyl1 Structure In The Open And Close
Forms
pdb|3NEG|B Chain B, Pyrabactin-Bound Pyl1 Structure In The Open And Close
Forms
Length = 202
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 112/165 (67%), Gaps = 5/165 (3%)
Query: 26 IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGD--LQIG 83
I H + + + +CSS L + I AP VWS+VRRFD+PQ YK F+ C V D +++G
Sbjct: 25 IAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVG 84
Query: 84 SVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVTVH---PEVIDG 140
R+VNV SGLPA TS ERL+LLDD+ + G I GG+HRL+NY S+ TVH E +
Sbjct: 85 CTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEEEEE 144
Query: 141 RPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHL 185
R T+V+ES+VVDVP+GN++++T F + +I+ NL+ LA ++E +
Sbjct: 145 RIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITEAM 189
>pdb|3F08|A Chain A, Crystal Structure Of The Putative Uncharacterized Protein
Q6hg14 From Bacilllus Thuringiensis. Northeast
Structural Genomics Consortium Target Bur153.
pdb|3F08|B Chain B, Crystal Structure Of The Putative Uncharacterized Protein
Q6hg14 From Bacilllus Thuringiensis. Northeast
Structural Genomics Consortium Target Bur153
Length = 146
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 11/126 (8%)
Query: 54 VWSLVRRFDQPQKYKPFV-SRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHI 112
VW L+ F+ + P++ S + +G G VR + G T ERLE+ +D+E
Sbjct: 17 VWQLIGGFNSLPDWLPYIPSSKLTEG----GRVRHLANPDG---ETIIERLEVFNDKERY 69
Query: 113 FGMRIVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIK 172
+ I + NY S + V T ++E P + +E V +
Sbjct: 70 YTYSIXNAPFPVTNYLSTIQVKEGT---ESNTSLVEWSGTFTPVAVSDEEAINLVHGIYS 126
Query: 173 CNLKSL 178
LK+L
Sbjct: 127 DGLKAL 132
>pdb|3CNW|A Chain A, Three-Dimensional Structure Of The Protein Xoxi (Q81ay6)
From Bacillus Cereus. Northeast Structural Genomics
Consortium Target Bcr196.
pdb|3CNW|B Chain B, Three-Dimensional Structure Of The Protein Xoxi (Q81ay6)
From Bacillus Cereus. Northeast Structural Genomics
Consortium Target Bcr196
Length = 148
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 54 VWSLVRRFDQPQKYKPFV-SRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHI 112
VW L+ F+ + P++ S + +G G VR + G T ERLE+ +D+E
Sbjct: 19 VWQLIGGFNSLPDWLPYIPSSKLTEG----GRVRHLANPDG---DTIIERLEVFNDKERY 71
Query: 113 FGMRIVGGDHRLKNYSSIVTV 133
+ I + NY S + V
Sbjct: 72 YTYSIXNAPFPVTNYLSTIQV 92
>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2II3|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II4|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II5|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
Length = 262
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 13/92 (14%)
Query: 80 LQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSI-------VT 132
L + +V+ V ++S T RL+ L + ++GG L N SI V
Sbjct: 134 LIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVI 193
Query: 133 VHPEVIDGRPGTLVIESFVVDVPDGNTKDETC 164
+ PEV G GT + +P N K E C
Sbjct: 194 LPPEVAIGALGT------IKALPRFNEKGEVC 219
>pdb|2WQL|A Chain A, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|B Chain B, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|C Chain C, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|D Chain D, Crystal Structure Of The Major Carrot Allergen Dau C 1
Length = 154
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 76 VQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVT 132
V+GD G+VR + + G P TT T R + ++ E + ++ GD L SI T
Sbjct: 44 VKGDGGAGTVRIITLPEGSPITTMTVRTDAVNKEALSYDSTVIDGDILLGFIESIET 100
>pdb|2BK0|A Chain A, Crystal Structure Of The Major Celery Allergen Api G 1
pdb|2BK0|B Chain B, Crystal Structure Of The Major Celery Allergen Api G 1
Length = 154
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 76 VQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSI 130
++GD G+++ + + G P TT T R++ ++ E F ++ GD L SI
Sbjct: 44 IKGDGGPGTLKIITLPDGGPITTMTLRIDGVNKEALTFDYSVIDGDILLGFIESI 98
>pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
pdb|4GKL|B Chain B, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
Length = 422
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 15/103 (14%)
Query: 93 GLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVTVHPEVIDGRPGTL-----VI 147
P + L L D E + GM I N ++ +HP ++GR GTL +
Sbjct: 15 AYPGEKGKKFLSLEKDLERLKGMGI--------NTVWLMPIHPTGVEGRKGTLGSPYAIR 66
Query: 148 ESFVVDVPDGNTKDETCYFVEALIKCNLKSLAD-VSEHLAVQD 189
+ + +D+ G TK + FV+ + N+ L D V H AV +
Sbjct: 67 DYYEIDLLIG-TKGDFKKFVKRAHELNMYVLMDMVLNHAAVDN 108
>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein
At1g70830, A Member Of The Major Latex Protein Family
Length = 166
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 77 QGDL-QIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYSS-IVTVH 134
+GD +GS+ N A + ER+E ++ ++++ R++ GD +K Y S ++T+
Sbjct: 58 EGDWGTVGSIVFWNYVHDGEAKVAKERIEAVEPDKNLITFRVIEGD-LMKEYKSFLLTIQ 116
Query: 135 PEVIDGRPGTLV 146
G PG++V
Sbjct: 117 VTPKPGGPGSIV 128
>pdb|3V7P|A Chain A, Crystal Structure Of Amidohydrolase Nis_0429 (Target
Efi-500396) From Nitratiruptor Sp. Sb155-2
Length = 427
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 14 GSGGFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAP-VHLVWSLVRRFDQPQKYKPFVS 72
GSG F K ++++ + V+D + L K + VH+VW+ Y +
Sbjct: 220 GSGEFAKFFKEFLNQ--TRPVNDTKSFLELFKELHTLFVHMVWANEEEIQTIASYNAHII 277
Query: 73 RCIVQGDLQIGSVREVNVKSGLPATTSTERL 103
C + L V ++ +P +T+ L
Sbjct: 278 HCPISNRLLGNGVLDLEKIKSIPYAIATDGL 308
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,494,473
Number of Sequences: 62578
Number of extensions: 267947
Number of successful extensions: 617
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 550
Number of HSP's gapped (non-prelim): 35
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)