Query 029200
Match_columns 197
No_of_seqs 148 out of 1144
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 09:06:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029200.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029200hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07816 Bet_v1-like Ligand-bin 99.9 5.9E-24 1.3E-28 166.3 19.6 115 38-157 2-122 (148)
2 cd07821 PYR_PYL_RCAR_like Pyra 99.8 1.5E-18 3.3E-23 130.7 18.3 138 38-183 2-140 (140)
3 PF10604 Polyketide_cyc2: Poly 99.8 1.4E-17 3E-22 125.5 20.7 136 37-183 2-139 (139)
4 PF00407 Bet_v_1: Pathogenesis 99.8 1.2E-17 2.5E-22 131.4 17.0 114 37-155 4-123 (151)
5 cd08866 SRPBCC_11 Ligand-bindi 99.8 1.4E-16 3E-21 122.0 17.6 138 39-184 1-144 (144)
6 cd08862 SRPBCC_Smu440-like Lig 99.7 5E-15 1.1E-19 111.8 17.9 135 38-184 2-138 (138)
7 cd08865 SRPBCC_10 Ligand-bindi 99.7 4.1E-15 8.9E-20 111.7 16.7 134 40-184 2-140 (140)
8 cd08861 OtcD1_ARO-CYC_like N-t 99.7 9.7E-15 2.1E-19 111.4 16.6 137 39-184 1-142 (142)
9 cd07819 SRPBCC_2 Ligand-bindin 99.6 6.9E-14 1.5E-18 105.7 17.7 135 37-181 2-139 (140)
10 cd07822 SRPBCC_4 Ligand-bindin 99.6 1.3E-13 2.8E-18 103.8 17.4 138 39-183 2-141 (141)
11 cd07818 SRPBCC_1 Ligand-bindin 99.6 1.4E-13 3E-18 106.1 17.8 137 38-184 3-150 (150)
12 cd07817 SRPBCC_8 Ligand-bindin 99.6 9.6E-14 2.1E-18 104.9 16.2 133 39-183 2-138 (139)
13 cd07813 COQ10p_like Coenzyme Q 99.6 9E-14 1.9E-18 106.1 14.1 134 40-184 2-137 (138)
14 cd08860 TcmN_ARO-CYC_like N-te 99.5 6E-13 1.3E-17 103.9 16.3 140 38-186 2-146 (146)
15 cd07825 SRPBCC_7 Ligand-bindin 99.5 1.5E-12 3.3E-17 99.4 14.2 137 39-183 2-144 (144)
16 cd07814 SRPBCC_CalC_Aha1-like 99.5 2.6E-12 5.6E-17 96.9 14.9 135 39-184 2-139 (139)
17 cd07824 SRPBCC_6 Ligand-bindin 99.4 2.2E-11 4.7E-16 94.1 16.3 131 40-181 4-145 (146)
18 cd07812 SRPBCC START/RHO_alpha 99.4 7.2E-11 1.6E-15 86.3 16.8 133 40-180 2-139 (141)
19 cd05018 CoxG Carbon monoxide d 99.4 2.4E-11 5.2E-16 92.1 14.1 137 38-183 2-144 (144)
20 cd07820 SRPBCC_3 Ligand-bindin 99.3 1.5E-10 3.3E-15 88.5 15.2 110 40-159 2-116 (137)
21 PF03364 Polyketide_cyc: Polyk 99.3 1.8E-10 3.8E-15 86.6 12.8 127 47-179 1-130 (130)
22 PRK10724 hypothetical protein; 99.2 5.6E-10 1.2E-14 88.4 15.0 139 36-186 14-155 (158)
23 cd07823 SRPBCC_5 Ligand-bindin 99.2 5E-10 1.1E-14 86.5 13.2 137 40-184 2-146 (146)
24 cd08893 SRPBCC_CalC_Aha1-like_ 99.0 1.3E-08 2.9E-13 76.4 14.5 132 38-184 1-136 (136)
25 cd08898 SRPBCC_CalC_Aha1-like_ 99.0 2.5E-08 5.5E-13 75.8 14.5 136 38-184 2-145 (145)
26 cd08899 SRPBCC_CalC_Aha1-like_ 99.0 1.4E-08 3E-13 79.7 13.1 128 38-186 12-139 (157)
27 cd08894 SRPBCC_CalC_Aha1-like_ 98.9 9.8E-08 2.1E-12 73.1 13.7 133 42-184 3-139 (139)
28 cd08891 SRPBCC_CalC Ligand-bin 98.8 4.5E-07 9.7E-12 70.2 14.8 134 39-184 2-149 (149)
29 cd07826 SRPBCC_CalC_Aha1-like_ 98.7 6.5E-07 1.4E-11 68.9 14.4 133 42-183 3-141 (142)
30 cd08897 SRPBCC_CalC_Aha1-like_ 98.7 1E-06 2.2E-11 67.0 14.3 122 44-184 5-133 (133)
31 cd08900 SRPBCC_CalC_Aha1-like_ 98.7 1.1E-06 2.5E-11 67.4 14.6 132 42-184 3-143 (143)
32 cd08896 SRPBCC_CalC_Aha1-like_ 98.7 1.1E-06 2.4E-11 67.8 14.1 134 42-184 3-146 (146)
33 cd08876 START_1 Uncharacterize 98.6 6.9E-06 1.5E-10 66.1 18.4 141 37-182 41-194 (195)
34 COG5637 Predicted integral mem 98.6 6.3E-07 1.4E-11 71.9 11.8 144 33-187 66-213 (217)
35 cd08895 SRPBCC_CalC_Aha1-like_ 98.6 5.1E-06 1.1E-10 64.0 16.3 130 42-183 3-145 (146)
36 COG3427 Carbon monoxide dehydr 98.6 1.6E-06 3.4E-11 67.7 12.4 106 39-153 3-111 (146)
37 COG2867 Oligoketide cyclase/li 98.4 9.5E-06 2.1E-10 63.1 12.2 138 37-188 2-141 (146)
38 cd08901 SRPBCC_CalC_Aha1-like_ 98.4 1.3E-05 2.7E-10 61.2 12.6 129 39-184 2-132 (136)
39 PF08327 AHSA1: Activator of H 98.4 2.2E-05 4.8E-10 57.9 13.3 122 48-183 1-124 (124)
40 cd08892 SRPBCC_Aha1 Putative h 98.4 2.2E-05 4.8E-10 59.2 13.4 122 42-183 3-125 (126)
41 PF06240 COXG: Carbon monoxide 98.3 1.6E-05 3.4E-10 61.3 12.1 129 46-182 4-139 (140)
42 COG3832 Uncharacterized conser 98.2 4.9E-05 1.1E-09 59.4 13.3 134 42-183 11-148 (149)
43 PTZ00220 Activator of HSP-90 A 97.6 0.0012 2.5E-08 50.4 11.0 85 47-141 1-86 (132)
44 COG4276 Uncharacterized conser 97.3 0.03 6.6E-07 43.2 15.2 128 46-180 9-148 (153)
45 cd08874 START_STARD9-like C-te 97.2 0.062 1.3E-06 44.3 17.3 140 37-183 45-204 (205)
46 cd08905 START_STARD1-like Chol 97.2 0.033 7.1E-07 45.8 15.7 142 37-184 49-208 (209)
47 PF08982 DUF1857: Domain of un 97.0 0.024 5.2E-07 44.5 12.6 123 50-187 19-146 (149)
48 cd08906 START_STARD3-like Chol 97.0 0.13 2.9E-06 42.3 17.5 141 37-184 49-208 (209)
49 PF10698 DUF2505: Protein of u 96.6 0.19 4.1E-06 39.4 14.8 136 40-183 2-156 (159)
50 cd08877 START_2 Uncharacterize 96.6 0.076 1.7E-06 43.5 12.6 139 38-184 47-214 (215)
51 cd08868 START_STARD1_3_like Ch 96.5 0.37 8E-06 39.2 16.5 142 39-185 50-208 (208)
52 KOG3177 Oligoketide cyclase/li 96.3 0.14 3.1E-06 42.3 12.5 139 46-192 75-218 (227)
53 cd08871 START_STARD10-like Lip 96.2 0.55 1.2E-05 38.6 17.6 136 46-185 54-203 (222)
54 cd08870 START_STARD2_7-like Li 96.2 0.56 1.2E-05 38.3 16.5 140 38-183 51-207 (209)
55 cd08869 START_RhoGAP C-termina 96.2 0.55 1.2E-05 38.1 15.8 135 39-183 46-195 (197)
56 cd08911 START_STARD7-like Lipi 95.8 0.89 1.9E-05 37.2 16.2 135 46-184 52-206 (207)
57 cd08903 START_STARD5-like Lipi 95.3 1.3 2.9E-05 36.2 17.8 141 39-185 48-208 (208)
58 cd08873 START_STARD14_15-like 95.3 1.6 3.4E-05 36.9 16.8 108 39-153 79-203 (235)
59 cd08908 START_STARD12-like C-t 95.3 1.4 3.1E-05 36.3 15.1 137 37-183 52-202 (204)
60 cd00177 START Lipid-binding ST 95.1 1.2 2.6E-05 34.7 18.7 114 35-154 37-164 (193)
61 smart00234 START in StAR and p 94.9 1.6 3.4E-05 35.0 15.6 142 38-186 46-204 (206)
62 cd08867 START_STARD4_5_6-like 93.9 2.9 6.3E-05 33.9 15.8 141 37-182 46-205 (206)
63 cd08863 SRPBCC_DUF1857 DUF1857 93.8 2.5 5.4E-05 32.9 16.1 64 49-119 17-82 (141)
64 cd08913 START_STARD14-like Lip 93.4 4.2 9.1E-05 34.3 16.7 37 38-76 82-118 (240)
65 cd08910 START_STARD2-like Lipi 91.9 6 0.00013 32.3 13.3 138 38-183 50-205 (207)
66 cd08914 START_STARD15-like Lip 91.0 8.7 0.00019 32.4 15.4 37 38-76 79-115 (236)
67 cd08904 START_STARD6-like Lipi 87.2 15 0.00033 30.1 16.0 140 37-182 46-203 (204)
68 PF11687 DUF3284: Domain of un 76.5 29 0.00063 25.9 10.9 97 43-153 3-101 (120)
69 PF01852 START: START domain; 74.1 41 0.0009 26.5 17.3 142 35-186 44-204 (206)
70 cd08902 START_STARD4-like Lipi 73.1 52 0.0011 27.2 15.4 136 39-182 49-201 (202)
71 cd08909 START_STARD13-like C-t 72.9 52 0.0011 27.1 16.6 137 37-184 52-204 (205)
72 KOG2936 Uncharacterized conser 68.3 50 0.0011 28.9 9.0 85 42-139 176-261 (301)
73 COG4891 Uncharacterized conser 63.2 45 0.00097 24.1 6.5 84 97-184 9-92 (93)
74 PLN00188 enhanced disease resi 34.6 4.7E+02 0.01 25.9 15.4 107 46-153 234-359 (719)
No 1
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=99.93 E-value=5.9e-24 Score=166.25 Aligned_cols=115 Identities=18% Similarity=0.316 Sum_probs=101.4
Q ss_pred eEEEEEEeeeCCCHHHHHHHHhCCCC-C-CccCccceEEEE-ecCCCCCeEEEEEecCCCCceeEEEEEEEEeCCCcEEE
Q 029200 38 QCSSSLVKHIKAPVHLVWSLVRRFDQ-P-QKYKPFVSRCIV-QGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFG 114 (197)
Q Consensus 38 ~v~~sv~~~I~Apae~VW~vv~Df~~-~-~~W~P~v~~~~~-~G~~~vG~vR~v~~~~G~p~~~v~Erl~~~D~~~~~~~ 114 (197)
+++.++ +|+||+|+||++++||.+ + +.|.|.|++|++ +|++++|++|.+++.+|.++..++|||+++|+++|+++
T Consensus 2 ~~~~e~--~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~~ 79 (148)
T cd07816 2 TLEHEV--ELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTYK 79 (148)
T ss_pred cEEEEE--EecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEEE
Confidence 678888 999999999999999994 5 679999999997 78889999999999877555689999999999999999
Q ss_pred EEEEcCCC---CccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCC
Q 029200 115 MRIVGGDH---RLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDG 157 (197)
Q Consensus 115 Y~ii~g~~---p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g 157 (197)
|++++|++ ++++|.++++|.|.++ +. |.+.|+..|++..+
T Consensus 80 y~vveg~~~~~~~~~y~~t~~v~~~~~-~~--t~v~Wt~~ye~~~~ 122 (148)
T cd07816 80 YTVIEGDVLKDGYKSYKVEIKFVPKGD-GG--CVVKWTIEYEKKGD 122 (148)
T ss_pred EEEEecccccCceEEEEEEEEEEECCC-CC--EEEEEEEEEEECCC
Confidence 99999986 5999999999999964 44 79999999986544
No 2
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.82 E-value=1.5e-18 Score=130.74 Aligned_cols=138 Identities=35% Similarity=0.550 Sum_probs=117.1
Q ss_pred eEEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEEe-cCCCCCeEEEEEecCCCCceeEEEEEEEEeCCCcEEEEE
Q 029200 38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQ-GDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMR 116 (197)
Q Consensus 38 ~v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~~-G~~~vG~vR~v~~~~G~p~~~v~Erl~~~D~~~~~~~Y~ 116 (197)
+++.++ +|+||+++||+++.|+.+++.|.|.+.++++. +..++|+.+.+++..| ..+++++..+|+.++++.|+
T Consensus 2 ~i~~~~--~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~~g---~~~~~~i~~~~~~~~~i~~~ 76 (140)
T cd07821 2 KVTVSV--TIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTLKDG---GTVRERLLALDDAERRYSYR 76 (140)
T ss_pred cEEEEE--EECCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEEEEeCCC---CEEEEEehhcCccCCEEEEE
Confidence 466777 99999999999999999999999999999884 3335899999988876 57889999999876889999
Q ss_pred EEcCCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 029200 117 IVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 183 (197)
Q Consensus 117 ii~g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E 183 (197)
+.++..|+.++.++++|.|.++++ |.+.|+..++++.......+..++...+..+|++|++.+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~---t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~ 140 (140)
T cd07821 77 IVEGPLPVKNYVATIRVTPEGDGG---TRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALKAALE 140 (140)
T ss_pred ecCCCCCcccceEEEEEEECCCCc---cEEEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence 998767888899999999987444 6889998888654455577889999999999999999875
No 3
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.81 E-value=1.4e-17 Score=125.48 Aligned_cols=136 Identities=22% Similarity=0.225 Sum_probs=110.9
Q ss_pred ceEEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEEecCCCCCeEEEEEecCCCCceeEEEEEEEEeCCCcEEEEE
Q 029200 37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMR 116 (197)
Q Consensus 37 ~~v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~~G~~~vG~vR~v~~~~G~p~~~v~Erl~~~D~~~~~~~Y~ 116 (197)
.+++.++ +|+|||++||++++|+.++++|.|.+.++++.+.+++|..+.++.. |. ..++++++.++++++.+.|+
T Consensus 2 ~~~~~~~--~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~-g~--~~~~~~i~~~~~~~~~~~~~ 76 (139)
T PF10604_consen 2 FKVEVSI--EVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGGGPGTERTVRVA-GR--GTVREEITEYDPEPRRITWR 76 (139)
T ss_dssp EEEEEEE--EESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEECSTEEEEEEEEC-SC--SEEEEEEEEEETTTTEEEEE
T ss_pred EEEEEEE--EECCCHHHHHHHHhChhhhhhhhhceEEEEEccccccceeEEEEec-cc--cceeEEEEEecCCCcEEEEE
Confidence 4677888 9999999999999999999999999999988543345666777754 42 47999999999878999999
Q ss_pred EEcCCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeC-CCCCC-HHHHHHHHHHHHHHHHHHHHHHHh
Q 029200 117 IVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDV-PDGNT-KDETCYFVEALIKCNLKSLADVSE 183 (197)
Q Consensus 117 ii~g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~-p~g~~-~~~~~~~~~~~~~~gL~~Lk~~~E 183 (197)
+. ..|+.++..+++|.|.+ +| |.+.|+..+++ +.+.. ...++.++...++..|++|++.+|
T Consensus 77 ~~--~~~~~~~~~~~~~~~~~-~g---t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E 139 (139)
T PF10604_consen 77 FV--PSGFTNGTGRWRFEPVG-DG---TRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLKRAAE 139 (139)
T ss_dssp EE--SSSSCEEEEEEEEEEET-TT---EEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EE--ecceeEEEEEEEEEEcC-CC---EEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence 96 45778889999999998 44 67889988874 33444 356788999999999999999987
No 4
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=99.79 E-value=1.2e-17 Score=131.43 Aligned_cols=114 Identities=19% Similarity=0.318 Sum_probs=96.0
Q ss_pred ceEEEEEEeeeCCCHHHHHHHHhCCCC-CCccCcc-ceEEEE-ecCCCCC-eEEEEEecCCCCceeEEEEEEEEeCCCcE
Q 029200 37 HQCSSSLVKHIKAPVHLVWSLVRRFDQ-PQKYKPF-VSRCIV-QGDLQIG-SVREVNVKSGLPATTSTERLELLDDEEHI 112 (197)
Q Consensus 37 ~~v~~sv~~~I~Apae~VW~vv~Df~~-~~~W~P~-v~~~~~-~G~~~vG-~vR~v~~~~G~p~~~v~Erl~~~D~~~~~ 112 (197)
.+++.++ ++++||+++|+++.+... +|+-.|. |+++++ +|++++| ++|.++|..+.|...++||++.+|+++++
T Consensus 4 ~~~~~E~--~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~~~ 81 (151)
T PF00407_consen 4 GKLEVEV--EVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEENKT 81 (151)
T ss_dssp EEEEEEE--EESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTTTE
T ss_pred EEEEEEE--EecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCCcE
Confidence 4677888 999999999999997554 4888874 689988 8998887 99999999777778899999999999999
Q ss_pred EEEEEEcCCC--CccceEEEEEEEeccCCCCCeEEEEEEEEEeCC
Q 029200 113 FGMRIVGGDH--RLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVP 155 (197)
Q Consensus 113 ~~Y~ii~g~~--p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p 155 (197)
++|++++|++ .+..|..++++.|.++++ |.+.|+..|++.
T Consensus 82 ~~y~viEGd~l~~~~~~~~~~~~~~~~~g~---~v~k~t~~Ye~~ 123 (151)
T PF00407_consen 82 ITYTVIEGDVLGDYKSFKSTIQKIPKGDGG---CVVKWTIEYEKK 123 (151)
T ss_dssp EEEEEEEETTGTTTEEEEEEEEEEEETTSC---EEEEEEEEEEES
T ss_pred EEEEEEeccccccEEEEEEEEEecCCCCCc---eEEEEEEEEEec
Confidence 9999999984 478999999999887555 788999999753
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.75 E-value=1.4e-16 Score=121.98 Aligned_cols=138 Identities=16% Similarity=0.214 Sum_probs=103.3
Q ss_pred EEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEE-ecCCCCCeEEEEEecCC-----CCceeEEEEEEEEeCCCcE
Q 029200 39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVKSG-----LPATTSTERLELLDDEEHI 112 (197)
Q Consensus 39 v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~-~G~~~vG~vR~v~~~~G-----~p~~~v~Erl~~~D~~~~~ 112 (197)
|+.++ .|+||+++||+++.|++++++|+|.+.+|++ ++. +.+.........+ .+ ..+..++.+.++.++.
T Consensus 1 ~~~~~--~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~ 76 (144)
T cd08866 1 VVARV--RVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERN-GNRVVLEQTGKQGILFFKFE-ARVVLELREREEFPRE 76 (144)
T ss_pred CeEEE--EECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcC-CCEEEEEEeeeEEEEeeeee-EEEEEEEEEecCCCce
Confidence 35677 9999999999999999999999999999987 432 1222111110000 00 2345566777655689
Q ss_pred EEEEEEcCCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029200 113 FGMRIVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEH 184 (197)
Q Consensus 113 ~~Y~ii~g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 184 (197)
++|++++| ++..+.++++|.|.++++. |.+.|+..+++..+.....+..+++..+...|++|++++|+
T Consensus 77 i~~~~~~g--~~~~~~g~w~~~~~~~~~~--t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l~~lr~~ae~ 144 (144)
T cd08866 77 LDFEMVEG--DFKRFEGSWRLEPLADGGG--TLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNLLAIRAEAES 144 (144)
T ss_pred EEEEEcCC--chhceEEEEEEEECCCCCe--EEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999987 4778999999999985244 78899888886556666788888999999999999999984
No 6
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.69 E-value=5e-15 Score=111.85 Aligned_cols=135 Identities=18% Similarity=0.122 Sum_probs=104.1
Q ss_pred eEEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEEecCC-CCCeEEEEEecCCCCceeEEEEEEEEeCCCcEEEEE
Q 029200 38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDL-QIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMR 116 (197)
Q Consensus 38 ~v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~~G~~-~vG~vR~v~~~~G~p~~~v~Erl~~~D~~~~~~~Y~ 116 (197)
+++.++ .|+||+++||++++|+.++++|+|.+.++++.++. ++|+...++...+ ..+..++.++++. ++++|+
T Consensus 2 ~~~~~~--~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~~~~~~~~---~~~~~~i~~~~p~-~~~~~~ 75 (138)
T cd08862 2 KFEATI--VIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSFKMKPPGL---VRSTFTVTELRPG-HSFTWT 75 (138)
T ss_pred EEEEEE--EEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEEEEecCCC---CceEEEEEEecCC-CEEEEE
Confidence 467788 99999999999999999999999999999886544 7888766765533 4678889999974 678887
Q ss_pred EEcCCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029200 117 IVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDG-NTKDETCYFVEALIKCNLKSLADVSEH 184 (197)
Q Consensus 117 ii~g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g-~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 184 (197)
... +...+..+++|.+.++++ |.+.+++.+..|.+ .....+...++..++..|++||+.+|.
T Consensus 76 ~~~---~~~~~~~~~~~~~~~~~~---t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 138 (138)
T cd08862 76 GPA---PGISAVHRHEFEAKPDGG---VRVTTSESLSGPLAFLFGLFVGKKLRALLPEWLEGLKAAAEQ 138 (138)
T ss_pred ecC---CCEEEEEEEEEEEcCCCc---EEEEEEEEeecchHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 644 233455788999876333 67788888875432 223567788889999999999999873
No 7
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.68 E-value=4.1e-15 Score=111.71 Aligned_cols=134 Identities=18% Similarity=0.175 Sum_probs=101.7
Q ss_pred EEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEEe--cCCCCCeEEEEEec-CCCCceeEEEEEEEEeCCCcEEEEE
Q 029200 40 SSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQ--GDLQIGSVREVNVK-SGLPATTSTERLELLDDEEHIFGMR 116 (197)
Q Consensus 40 ~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~~--G~~~vG~vR~v~~~-~G~p~~~v~Erl~~~D~~~~~~~Y~ 116 (197)
+.++ .|+||+++||++++|+.++++|.|.+.+++.. ++.++|+...+.+. .|.+ ..++++++.+++ ++.+.|.
T Consensus 2 ~~~~--~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~-~~~~~~v~~~~p-~~~~~~~ 77 (140)
T cd08865 2 EESI--VIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRKFLGRR-IELTYEITEYEP-GRRVVFR 77 (140)
T ss_pred ceEE--EEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEEecCce-EEEEEEEEEecC-CcEEEEE
Confidence 4566 99999999999999999999999999888863 34568888776554 2321 357899999997 5789998
Q ss_pred EEcCCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029200 117 IVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVP--DGNTKDETCYFVEALIKCNLKSLADVSEH 184 (197)
Q Consensus 117 ii~g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p--~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 184 (197)
...++ + .+..++++.|.+ ++ |.+.|+..++.+ .......++..+...++..|++||+.+|.
T Consensus 78 ~~~~~--~-~~~~~~~~~~~~-~~---t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~ 140 (140)
T cd08865 78 GSSGP--F-PYEDTYTFEPVG-GG---TRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALLEA 140 (140)
T ss_pred ecCCC--c-ceEEEEEEEEcC-Cc---eEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence 87653 3 367889999986 44 677888777642 12223456777888889999999999884
No 8
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.66 E-value=9.7e-15 Score=111.41 Aligned_cols=137 Identities=15% Similarity=0.080 Sum_probs=100.5
Q ss_pred EEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEE-EecCCCCC-eEEEEEec-CCCCceeEEEEEEEEeCCCcEEEE
Q 029200 39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCI-VQGDLQIG-SVREVNVK-SGLPATTSTERLELLDDEEHIFGM 115 (197)
Q Consensus 39 v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~-~~G~~~vG-~vR~v~~~-~G~p~~~v~Erl~~~D~~~~~~~Y 115 (197)
+++++ +|+||+++||++++||.++++|+|. .+++ +++.+ .+ .++.+... .|. ..-.+....+|++.+++.|
T Consensus 1 ~~~s~--~i~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~~-~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~ 74 (142)
T cd08861 1 VEHSV--TVAAPAEDVYDLLADAERWPEFLPT-VHVERLELDG-GVERLRMWATAFDGS--VHTWTSRRVLDPEGRRIVF 74 (142)
T ss_pred CeEEE--EEcCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEcC-CEEEEEEEEEcCCCc--EEEEEEEEEEcCCCCEEEE
Confidence 35677 9999999999999999999999998 4554 34321 22 34434443 332 2222445567886788999
Q ss_pred EEEcCCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029200 116 RIVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVP--DGNTKDETCYFVEALIKCNLKSLADVSEH 184 (197)
Q Consensus 116 ~ii~g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p--~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 184 (197)
..++++.++..+.++++|+|.++++ |.+.|...+++. ..+....+++++...+...|++||+++|+
T Consensus 75 ~~~~~~~~~~~~~g~w~~~~~~~~~---t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 142 (142)
T cd08861 75 RQEEPPPPVASMSGEWRFEPLGGGG---TRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAER 142 (142)
T ss_pred EEeeCCCChhhheeEEEEEECCCCc---EEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhhC
Confidence 9988655788999999999987443 778888777643 23455678888899999999999999984
No 9
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.62 E-value=6.9e-14 Score=105.68 Aligned_cols=135 Identities=16% Similarity=0.086 Sum_probs=92.0
Q ss_pred ceEEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEE-ec-CCCCCeEEEEEecCCCCceeEEEEEEEEeC-CCcEE
Q 029200 37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QG-DLQIGSVREVNVKSGLPATTSTERLELLDD-EEHIF 113 (197)
Q Consensus 37 ~~v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~-~G-~~~vG~vR~v~~~~G~p~~~v~Erl~~~D~-~~~~~ 113 (197)
.+++.++ .|+||+++||++|.|+.++++|+|.+.++++ ++ +++.+...++.+..+ ....+.+.+++. ..+.+
T Consensus 2 ~~v~~s~--~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i 76 (140)
T cd07819 2 IKVSREF--EIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAY---GIKDTYALEYTWDGAGSV 76 (140)
T ss_pred ceEEEEE--EEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEeee---eEEEEEEEEEEEcCCCcE
Confidence 4788889 9999999999999999999999999999987 43 333333334444322 122233333432 25679
Q ss_pred EEEEEcCCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 029200 114 GMRIVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADV 181 (197)
Q Consensus 114 ~Y~ii~g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~ 181 (197)
+|+..++. +...+.++++|.|.+ ++ |.+.|+..+++.-......+..+........+++|++.
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~~-~~---t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (140)
T cd07819 77 SWTLVEGE-GNRSQEGSYTLTPKG-DG---TRVTFDLTVELTVPLPGFLKRKAEPLVLDEALKGLKKR 139 (140)
T ss_pred EEEEeccc-ceeEEEEEEEEEECC-CC---EEEEEEEEEEecCCCCHHHHHHhhhHHHHHHHHhHhhh
Confidence 99998864 577888999999987 34 67788877764322333445555555566666777664
No 10
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.60 E-value=1.3e-13 Score=103.76 Aligned_cols=138 Identities=17% Similarity=0.111 Sum_probs=97.1
Q ss_pred EEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEEecCCCCCeEEEEEecCC-CCceeEEEEEEEEeCCCcEEEEEE
Q 029200 39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSG-LPATTSTERLELLDDEEHIFGMRI 117 (197)
Q Consensus 39 v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~~G~~~vG~vR~v~~~~G-~p~~~v~Erl~~~D~~~~~~~Y~i 117 (197)
++.++ .|+||+++||+++.|+.++++|.|.+..++... ..+|....+++..+ .....+.+++.++|+ ++++.|+.
T Consensus 2 v~~~~--~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~-~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~~~~~ 77 (141)
T cd07822 2 ISTEI--EINAPPEKVWEVLTDFPSYPEWNPFVRSATGLS-LALGARLRFVVKLPGGPPRSFKPRVTEVEP-PRRLAWRG 77 (141)
T ss_pred eEEEE--EecCCHHHHHHHHhccccccccChhheeEeccc-cCCCCEEEEEEeCCCCCcEEEEEEEEEEcC-CCEeEEEe
Confidence 56777 999999999999999999999999887776531 46788877766422 122567889999998 57899998
Q ss_pred EcCCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 029200 118 VGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPD-GNTKDETCYFVEALIKCNLKSLADVSE 183 (197)
Q Consensus 118 i~g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~-g~~~~~~~~~~~~~~~~gL~~Lk~~~E 183 (197)
..++.+......+++|.|.++++ |.+.|...+..+. ......+...+...++..++.|++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~---T~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 78 GLPFPGLLDGEHSFELEPLGDGG---TRFVHRETFSGLLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred cCCCCcEeeEEEEEEEEEcCCCc---EEEEEeeEEEEEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 77654434566789999985344 6667766664321 112234555666666667777777665
No 11
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.60 E-value=1.4e-13 Score=106.09 Aligned_cols=137 Identities=14% Similarity=0.068 Sum_probs=101.4
Q ss_pred eEEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEE---EE---ecCCCCCeEEEEEecCCCCceeEEEEEEEEeCCCc
Q 029200 38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC---IV---QGDLQIGSVREVNVKSGLPATTSTERLELLDDEEH 111 (197)
Q Consensus 38 ~v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~---~~---~G~~~vG~vR~v~~~~G~p~~~v~Erl~~~D~~~~ 111 (197)
+++.++ .|+||+++||+++.|+.++++|+|.+..+ .. .+..++|+...++...+. .....++.++++ ++
T Consensus 3 ~~~~s~--~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~v~~~~p-~~ 77 (150)
T cd07818 3 RVERSI--VINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKV--GEGEMEITESVP-NE 77 (150)
T ss_pred EEEEEE--EEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCcc--cceEEEEEecCC-Cc
Confidence 567777 99999999999999999999999976543 21 124568888777655421 234567888887 57
Q ss_pred EEEEEEEcCCCCc-cceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029200 112 IFGMRIVGGDHRL-KNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGN----TKDETCYFVEALIKCNLKSLADVSEH 184 (197)
Q Consensus 112 ~~~Y~ii~g~~p~-~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~----~~~~~~~~~~~~~~~gL~~Lk~~~E~ 184 (197)
++.|++..+. |+ .....+++|.|.+ +| |.+.|+..++.+.+. ....+..+++..+..+|++||+.+|+
T Consensus 78 ~i~~~~~~~~-~~~~~~~~~~~~~~~~-~g---T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 150 (150)
T cd07818 78 RIEYELRFIK-PFEATNDVEFTLEPVG-GG---TKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLEK 150 (150)
T ss_pred EEEEEEEecC-CccccceEEEEEEEcC-Cc---eEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 8999998532 34 3678899999995 55 677888888754322 23455678888889999999999985
No 12
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.60 E-value=9.6e-14 Score=104.92 Aligned_cols=133 Identities=18% Similarity=0.199 Sum_probs=98.8
Q ss_pred EEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEEecCCCCCeEEEEEecCCCCceeEEEEEEEEeCCCcEEEEEEE
Q 029200 39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIV 118 (197)
Q Consensus 39 v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~~G~~~vG~vR~v~~~~G~p~~~v~Erl~~~D~~~~~~~Y~ii 118 (197)
++.++ +|+||+++||+++.|+.++++|.|.+.++++.++ .+....+....|.. ..+..++..+++ ++.+.|...
T Consensus 2 v~~~i--~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~g~~-~~~~~~v~~~~~-~~~i~~~~~ 75 (139)
T cd07817 2 VEKSI--TVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDD--TRSHWKAKGPAGLS-VEWDAEITEQVP-NERIAWRSV 75 (139)
T ss_pred eeEEE--EeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCC--CceEEEEecCCCCc-EEEEEEEeccCC-CCEEEEEEC
Confidence 56788 9999999999999999999999999999987432 12333344433532 355667777777 456999987
Q ss_pred cCCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCH----HHHHHHHHHHHHHHHHHHHHHHh
Q 029200 119 GGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTK----DETCYFVEALIKCNLKSLADVSE 183 (197)
Q Consensus 119 ~g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~----~~~~~~~~~~~~~gL~~Lk~~~E 183 (197)
.+. + .+.+++++.|.++++ |.+.++..++++.+... ..+..+++..+++.|++||+.+|
T Consensus 76 ~~~--~-~~~~~~~f~~~~~~~---T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE 138 (139)
T cd07817 76 EGA--D-PNAGSVRFRPAPGRG---TRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLVE 138 (139)
T ss_pred CCC--C-CcceEEEEEECCCCC---eEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 764 3 567899999987433 77788888886543322 45677888889999999999988
No 13
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.57 E-value=9e-14 Score=106.09 Aligned_cols=134 Identities=14% Similarity=0.148 Sum_probs=99.4
Q ss_pred EEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEE-ecCCCCCeEEEEEec-CCCCceeEEEEEEEEeCCCcEEEEEE
Q 029200 40 SSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVK-SGLPATTSTERLELLDDEEHIFGMRI 117 (197)
Q Consensus 40 ~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~-~G~~~vG~vR~v~~~-~G~p~~~v~Erl~~~D~~~~~~~Y~i 117 (197)
+.++ +|+||++.||+++.|++++++|.|.+.++++ ++.+ .+....+.+. .+. ...+..++. +++ ++++.++.
T Consensus 2 ~~s~--~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~-~~~~~~~~~~~~~~-~~~~~~~~~-~~~-~~~i~~~~ 75 (138)
T cd07813 2 SKSR--LVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDE-DELEAELTVGFGGI-RESFTSRVT-LVP-PESIEAEL 75 (138)
T ss_pred eEEE--EcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCC-CEEEEEEEEeeccc-cEEEEEEEE-ecC-CCEEEEEe
Confidence 5677 9999999999999999999999999999988 4322 3333344443 221 123445544 676 56889998
Q ss_pred EcCCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029200 118 VGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEH 184 (197)
Q Consensus 118 i~g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 184 (197)
++| +++.+.++++++|.++ ++ |.+.+...+++.-+.....+..+++...+..|+++++++++
T Consensus 76 ~~g--~~~~~~g~w~~~p~~~-~~--T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~~ 137 (138)
T cd07813 76 VDG--PFKHLEGEWRFKPLGE-NA--CKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKRAKQ 137 (138)
T ss_pred cCC--ChhhceeEEEEEECCC-CC--EEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 887 5778999999999984 44 78899988886533344566777788888888888888765
No 14
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.54 E-value=6e-13 Score=103.95 Aligned_cols=140 Identities=12% Similarity=0.060 Sum_probs=97.0
Q ss_pred eEEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEE-e-cCCCCCeEEEEEec-CCCCceeEEEEEEEEeCCCcEEE
Q 029200 38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-Q-GDLQIGSVREVNVK-SGLPATTSTERLELLDDEEHIFG 114 (197)
Q Consensus 38 ~v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~-~-G~~~vG~vR~v~~~-~G~p~~~v~Erl~~~D~~~~~~~ 114 (197)
..+.+| +|+|||++||+++.|+.++|.|.|.+.++++ + |+.++|..-.+... +|.+ ..+..+. .+|+..+++.
T Consensus 2 ~~~~si--~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~~r~~i~~~~~g~~-~~w~s~~-~~~~~~~~i~ 77 (146)
T cd08860 2 RTDNSI--VIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVRFRLTMHPDANGTV-WSWVSER-TLDPVNRTVR 77 (146)
T ss_pred cceeEE--EEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEEEEEEEEeccCCEE-EEEEEEE-EecCCCcEEE
Confidence 467889 9999999999999999999999999999987 4 34445532222231 3322 1221121 2576667776
Q ss_pred EEEEcCCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029200 115 MRIVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPD--GNTKDETCYFVEALIKCNLKSLADVSEHLA 186 (197)
Q Consensus 115 Y~ii~g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~--g~~~~~~~~~~~~~~~~gL~~Lk~~~E~~~ 186 (197)
++-. ...|+....++++|+|.+ +| |.+.+..+|+.+. .+....+.++++..+.+.|++||+++|+.+
T Consensus 78 ~~~~-~~~p~~~m~~~W~f~~~~-~g---T~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~~~ 146 (146)
T cd08860 78 ARRV-ETGPFAYMNIRWEYTEVP-EG---TRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEAAA 146 (146)
T ss_pred EEEe-cCCCcceeeeeEEEEECC-CC---EEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhhcC
Confidence 6422 224788999999999986 45 5666666665332 223446778888889999999999999843
No 15
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.48 E-value=1.5e-12 Score=99.45 Aligned_cols=137 Identities=17% Similarity=0.149 Sum_probs=92.7
Q ss_pred EEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEE-e--cCCCCCeEEEEEecC-CCCceeEEEEEEEEeCCCcEEE
Q 029200 39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKS-GLPATTSTERLELLDDEEHIFG 114 (197)
Q Consensus 39 v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~-~--G~~~vG~vR~v~~~~-G~p~~~v~Erl~~~D~~~~~~~ 114 (197)
++.++ .|+||+++||+++.|+.++++|+|....... . ++.++|....+.+.. |.+ ..+..+++++++ +++++
T Consensus 2 i~~~~--~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~-~~~~~~v~~~~p-~~~l~ 77 (144)
T cd07825 2 VSVSR--TVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMRLDGGP-YRITNHVVAFEE-NRLIA 77 (144)
T ss_pred eEEEE--EEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEEcCCCc-eEEEEEEEEECC-CCEEE
Confidence 56677 9999999999999999999999984322211 2 245788887665542 332 456778999998 56799
Q ss_pred EEEEcCCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHh
Q 029200 115 MRIVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDE--TCYFVEALIKCNLKSLADVSE 183 (197)
Q Consensus 115 Y~ii~g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~~--~~~~~~~~~~~gL~~Lk~~~E 183 (197)
|+......+......+++|+|.++++ |.+.++..|..... .... +......-++..|+.|++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~~g~---T~vt~~~~~~g~~~-~~~~~~~~~~~~~g~~~~l~~L~~~~~ 144 (144)
T cd07825 78 WRPGPAGQEPGGHRWRWELEPIGPGR---TRVTETYDWSAVTD-LKELLGFPAFPEVQLEASLDRLATLAE 144 (144)
T ss_pred EEccCCCCCCCceeEEEEEEECCCCc---EEEEEEEeccCChh-hhhccccCCCCHHHHHHHHHHHHHHhC
Confidence 98642222344456688999987444 67777777764322 1111 223345668889999999876
No 16
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.48 E-value=2.6e-12 Score=96.90 Aligned_cols=135 Identities=13% Similarity=0.054 Sum_probs=96.0
Q ss_pred EEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEEecCCCC-CeEEEEEecC-CCCceeEEEEEEEEeCCCcEEEEE
Q 029200 39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQI-GSVREVNVKS-GLPATTSTERLELLDDEEHIFGMR 116 (197)
Q Consensus 39 v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~~G~~~v-G~vR~v~~~~-G~p~~~v~Erl~~~D~~~~~~~Y~ 116 (197)
++.++ +|+||+++||+++.|+.++++|+|.+..+..+ ..+ |+.+.+.... |. ...+..+++++|+ ++.+.|+
T Consensus 2 i~~s~--~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~--~~~Gg~~~~~~~~~~g~-~~~~~~~i~~~~~-~~~i~~~ 75 (139)
T cd07814 2 ITIER--EFDAPPELVWRALTDPELLAQWFGPTTTAEMD--LRVGGRWFFFMTGPDGE-EGWVSGEVLEVEP-PRRLVFT 75 (139)
T ss_pred eEEEE--EecCCHHHHHHHcCCHHHHHhhhCcCCceEEc--ccCCceEEEEEECCCCC-EEeccEEEEEEcC-CCeEEEE
Confidence 45677 99999999999999999999999863333321 112 5666544332 21 1457889999998 5789999
Q ss_pred EEcCCC-CccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029200 117 IVGGDH-RLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEH 184 (197)
Q Consensus 117 ii~g~~-p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 184 (197)
...++. +......+++|.|.+ ++ |.+.+...+.++... ...+...+..-+...|+.||+.+|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~-~~---T~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~lk~~~E~ 139 (139)
T cd07814 76 WAFSDETPGPETTVTVTLEETG-GG---TRLTLTHSGFPEEDA-EQEAREGMEEGWTGTLDRLKALLEK 139 (139)
T ss_pred ecccCCCCCCceEEEEEEEECC-CC---EEEEEEEEccChHhH-HHHHHhCHhhHHHHHHHHHHHHhhC
Confidence 987643 455678889999987 44 677887777543211 3345566677788899999999985
No 17
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.41 E-value=2.2e-11 Score=94.14 Aligned_cols=131 Identities=21% Similarity=0.271 Sum_probs=86.8
Q ss_pred EEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEE-e--cCCCCCeEEEEEecCCCCc-eeEEEEEEEEeCCCcEEEE
Q 029200 40 SSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKSGLPA-TTSTERLELLDDEEHIFGM 115 (197)
Q Consensus 40 ~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~-~--G~~~vG~vR~v~~~~G~p~-~~v~Erl~~~D~~~~~~~Y 115 (197)
..+. +|+||+++||++++|+.++++|.|.+.++++ + ++.++|+..++......|. ..+.-++.++++ .+.+.|
T Consensus 4 ~~~~--~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~~~ 80 (146)
T cd07824 4 HTVW--RIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIEP-LSLLEV 80 (146)
T ss_pred eEEE--EecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeecC-CcEEEE
Confidence 3455 8999999999999999999999999999977 4 3456777654433221121 345566777777 578899
Q ss_pred EEEcCCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCCC-------CCCHHHHHHHHHHHHHHHHHHHHHH
Q 029200 116 RIVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPD-------GNTKDETCYFVEALIKCNLKSLADV 181 (197)
Q Consensus 116 ~ii~g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~-------g~~~~~~~~~~~~~~~~gL~~Lk~~ 181 (197)
+. .|+ +. ...+++|+|.+ +| |.+.++..++.+. .+....+....+.++...+++||++
T Consensus 81 ~~-~g~--~~-~~~~~~~~~~~-~g---t~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~~ 145 (146)
T cd07824 81 RA-SGD--LE-GVGRWTLAPDG-SG---TVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLARR 145 (146)
T ss_pred EE-EEe--ee-EEEEEEEEEcC-CC---EEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHhh
Confidence 85 453 33 36789999976 45 5667777776421 2222344455555566666666654
No 18
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.38 E-value=7.2e-11 Score=86.26 Aligned_cols=133 Identities=22% Similarity=0.211 Sum_probs=93.2
Q ss_pred EEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEEe--cCCCCCeEEEEEecCCCCceeEEEEEEEEeCCCcEEEEEE
Q 029200 40 SSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQ--GDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRI 117 (197)
Q Consensus 40 ~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~~--G~~~vG~vR~v~~~~G~p~~~v~Erl~~~D~~~~~~~Y~i 117 (197)
+.++ .|+||+++||+++.|+.++++|.|.+.++++. +....|....+.+..+. ......++..+++ +..++|..
T Consensus 2 ~~~~--~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~-~~~~~~~~ 77 (141)
T cd07812 2 EASI--EIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRKGGR-RLTLTSEVTEVDP-PRPGRFRV 77 (141)
T ss_pred cEEE--EeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEecCCc-cccceEEEEEecC-CCceEEEE
Confidence 3455 89999999999999999999999999999873 23455666655543121 1457788888887 56789998
Q ss_pred EcCCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCC---CHHHHHHHHHHHHHHHHHHHHH
Q 029200 118 VGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGN---TKDETCYFVEALIKCNLKSLAD 180 (197)
Q Consensus 118 i~g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~---~~~~~~~~~~~~~~~gL~~Lk~ 180 (197)
..++.+ ..+..++.+.+.++++ |.+.|+..+.++... ....+...++..+...++++++
T Consensus 78 ~~~~~~-~~~~~~~~~~~~~~~~---t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T cd07812 78 TGGGGG-VDGTGEWRLEPEGDGG---TRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKA 139 (141)
T ss_pred ecCCCC-cceeEEEEEEECCCCc---EEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHh
Confidence 877554 5778889999987324 677888888754332 2344455555555555555544
No 19
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.37 E-value=2.4e-11 Score=92.11 Aligned_cols=137 Identities=18% Similarity=0.147 Sum_probs=91.1
Q ss_pred eEEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEEecCCCCCeEEEEEecCCCC-ceeEEEEEEEEeCCCcEEEEE
Q 029200 38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLP-ATTSTERLELLDDEEHIFGMR 116 (197)
Q Consensus 38 ~v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~~G~~~vG~vR~v~~~~G~p-~~~v~Erl~~~D~~~~~~~Y~ 116 (197)
+++.++ .|+||+++||++++|+.++++|.|.+.+++..+++.......+.+. +.. ....+.++.++++. +++.++
T Consensus 2 ~~~~~~--~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~ 77 (144)
T cd05018 2 KISGEF--RIPAPPEEVWAALNDPEVLARCIPGCESLEKIGPNEYEATVKLKVG-PVKGTFKGKVELSDLDPP-ESYTIT 77 (144)
T ss_pred eeeeEE--EecCCHHHHHHHhcCHHHHHhhccchhhccccCCCeEEEEEEEEEc-cEEEEEEEEEEEEecCCC-cEEEEE
Confidence 456777 9999999999999999999999999998876432211111122221 100 01234566666764 667777
Q ss_pred EEcC-CCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHh
Q 029200 117 IVGG-DHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGN----TKDETCYFVEALIKCNLKSLADVSE 183 (197)
Q Consensus 117 ii~g-~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~----~~~~~~~~~~~~~~~gL~~Lk~~~E 183 (197)
.... ......+..++.|.|.+ ++ |.+.|+..+++. |. ....+..+++..+...+++|+++++
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~-~g---T~v~~~~~~~~~-g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (144)
T cd05018 78 GEGKGGAGFVKGTARVTLEPDG-GG---TRLTYTADAQVG-GKLAQLGSRLIDGAARKLINQFFENLASKIG 144 (144)
T ss_pred EEEcCCCceEEEEEEEEEEecC-Cc---EEEEEEEEEEEc-cChhhhCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 6542 22356889999999984 55 677888888732 22 3345667777778888888888764
No 20
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.31 E-value=1.5e-10 Score=88.48 Aligned_cols=110 Identities=19% Similarity=0.226 Sum_probs=82.5
Q ss_pred EEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEEec----CCCCCeEEEEEecCC-CCceeEEEEEEEEeCCCcEEE
Q 029200 40 SSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQG----DLQIGSVREVNVKSG-LPATTSTERLELLDDEEHIFG 114 (197)
Q Consensus 40 ~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~~G----~~~vG~vR~v~~~~G-~p~~~v~Erl~~~D~~~~~~~ 114 (197)
+.++ +|+||+++||++++|+.+++.|.|.+.++++.+ ...+|+.-.+.+..+ .+ ...+-+++++++ ++.++
T Consensus 2 ~~s~--~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~-~~w~~~it~~~p-~~~f~ 77 (137)
T cd07820 2 ERST--VIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRHFGIP-QRWTTEITEVEP-PRRFV 77 (137)
T ss_pred eEEE--EcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEecCCc-eEEEEEEEEEcC-CCeEE
Confidence 5677 999999999999999999999999998888732 234577766666532 22 345677888887 56799
Q ss_pred EEEEcCCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCC
Q 029200 115 MRIVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNT 159 (197)
Q Consensus 115 Y~ii~g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~ 159 (197)
+..+.| |+..+..+..+.|.+ +| |.+.+...|++|.|..
T Consensus 78 ~~~~~G--~~~~w~h~~~f~~~~-~g---T~vt~~v~~~~p~g~l 116 (137)
T cd07820 78 DEQVSG--PFRSWRHTHRFEAIG-GG---TLMTDRVEYRLPLGPL 116 (137)
T ss_pred EEeccC--CchhCEEEEEEEECC-Cc---eEEEEEEEEeCCchhH
Confidence 998877 455566688999876 34 7888899998764443
No 21
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.26 E-value=1.8e-10 Score=86.61 Aligned_cols=127 Identities=21% Similarity=0.250 Sum_probs=82.8
Q ss_pred eCCCHHHHHHHHhCCCCCCccCccceEEEE-ecCCCCCeEEEEEecCCCCceeEEEEEEEEeCCCcEEEEEEEcCCCCcc
Q 029200 47 IKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLK 125 (197)
Q Consensus 47 I~Apae~VW~vv~Df~~~~~W~P~v~~~~~-~G~~~vG~vR~v~~~~G~p~~~v~Erl~~~D~~~~~~~Y~ii~g~~p~~ 125 (197)
|+||+++||++++|+++++.|.|.+.++++ +.++. +..-.+.+..+........++....+. . +.+..++| +++
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~g--~~~ 75 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGD-GMRARWEVKFGGIKRSWTSRVTEDPPE-R-IRFEQISG--PFK 75 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECC-EEEEEEEECTTTTCEEEEEEEEEECTT-T-EEEESSET--TEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC-eEEEEEEEecCCEEEEEEEEEEEEEee-e-eeeeecCC--Cch
Confidence 689999999999999999999999999987 32221 222233443221124456666655543 3 77777766 688
Q ss_pred ceEEEEEEEeccC--CCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 029200 126 NYSSIVTVHPEVI--DGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA 179 (197)
Q Consensus 126 ~y~ati~v~p~~~--~g~~~T~v~wt~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk 179 (197)
.+.+++++.|.++ +|+ .|.+...+.++++.......+..+++......+++|+
T Consensus 76 ~~~g~W~~~~~~~~~~g~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 76 SFEGSWRFEPLGGNEGGT-RTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp EEEEEEEEEEETTECCEE-EEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcEEEEEEEECCCCcCCC-EEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence 8999999999873 132 2455555666654444445566666666666666654
No 22
>PRK10724 hypothetical protein; Provisional
Probab=99.23 E-value=5.6e-10 Score=88.43 Aligned_cols=139 Identities=14% Similarity=0.115 Sum_probs=94.0
Q ss_pred CceEEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEE-e-cCCCCCeEEEEEec-CCCCceeEEEEEEEEeCCCcE
Q 029200 36 DHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-Q-GDLQIGSVREVNVK-SGLPATTSTERLELLDDEEHI 112 (197)
Q Consensus 36 ~~~v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~-~-G~~~vG~vR~v~~~-~G~p~~~v~Erl~~~D~~~~~ 112 (197)
+.+++.++ .|++|++++|+++.|.+++|+|.|.++++++ + .++ +.+..+++. .|. ...+..+.. +++ .++
T Consensus 14 M~~i~~~~--~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~--~~~a~l~v~~~g~-~~~f~srv~-~~~-~~~ 86 (158)
T PRK10724 14 MPQISRTA--LVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPG--QMTAAVDVSKAGI-SKTFTTRNQ-LTS-NQS 86 (158)
T ss_pred CCeEEEEE--EecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCC--EEEEEEEEeeCCc-cEEEEEEEE-ecC-CCE
Confidence 56788888 9999999999999999999999999999987 3 222 223334443 232 134445544 355 358
Q ss_pred EEEEEEcCCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029200 113 FGMRIVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLA 186 (197)
Q Consensus 113 ~~Y~ii~g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~~~ 186 (197)
+.+.+++| |++...+.++++|.++++ |.+....+|+.........+...+.......+++..++++++.
T Consensus 87 I~~~~~~G--pF~~l~g~W~f~p~~~~~---t~V~~~l~fef~s~l~~~~~~~~~~~~~~~mv~AF~~Ra~~~y 155 (158)
T PRK10724 87 ILMQLVDG--PFKKLIGGWKFTPLSQEA---CRIEFHLDFEFTNKLIELAFGRVFKELASNMVQAFTVRAKEVY 155 (158)
T ss_pred EEEEecCC--ChhhccceEEEEECCCCC---EEEEEEEEEEEchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999988 688899999999987444 6677777776433333334444444445555555555555543
No 23
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.20 E-value=5e-10 Score=86.47 Aligned_cols=137 Identities=20% Similarity=0.162 Sum_probs=87.5
Q ss_pred EEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEEecCCCCCeEEEEEecCCCCceeE--EEEEEEEeCCCcEEEEEE
Q 029200 40 SSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTS--TERLELLDDEEHIFGMRI 117 (197)
Q Consensus 40 ~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~~G~~~vG~vR~v~~~~G~p~~~v--~Erl~~~D~~~~~~~Y~i 117 (197)
+.++ +|+|||++||++++|+.+++.|.|.+.+.+..|++. ..-.++++-|.-...+ +=++.+++++.+++.+..
T Consensus 2 ~~~~--~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (146)
T cd07823 2 ENEF--TVPAPPDRVWALLLDIERVAPCLPGASLTEVEGDDE--YKGTVKVKLGPISASFKGTARLLEDDEAARRAVLEA 77 (146)
T ss_pred CceE--EecCCHHHHHHHhcCHHHHHhcCCCceeccccCCCe--EEEEEEEEEccEEEEEEEEEEEEeccCCCcEEEEEE
Confidence 4567 899999999999999999999999998887644321 1122333322100122 224666663467888775
Q ss_pred EcCCCC---ccceEEEEEEEeccCCCCCeEEEEEEEEEe--CC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029200 118 VGGDHR---LKNYSSIVTVHPEVIDGRPGTLVIESFVVD--VP-DGNTKDETCYFVEALIKCNLKSLADVSEH 184 (197)
Q Consensus 118 i~g~~p---~~~y~ati~v~p~~~~g~~~T~v~wt~~~~--~p-~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 184 (197)
...+.+ --....+++|.|.+ ++ |.+.|..+++ .| ..+....++...+.++...+++|++++|.
T Consensus 78 ~g~~~~~~g~~~~~~~~~l~~~~-~g---T~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~e~ 146 (146)
T cd07823 78 TGKDARGQGTAEATVTLRLSPAG-GG---TRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARLAA 146 (146)
T ss_pred EEecCCCcceEEEEEEEEEEecC-Cc---EEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 442111 11356677888844 44 7888888665 22 23333456777788888888999998873
No 24
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=99.04 E-value=1.3e-08 Score=76.43 Aligned_cols=132 Identities=16% Similarity=0.035 Sum_probs=83.9
Q ss_pred eEEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEEecCCCCCeEEEEEecCCCCceeEEEEEEEEeCCCcEEEEEE
Q 029200 38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRI 117 (197)
Q Consensus 38 ~v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~~G~~~vG~vR~v~~~~G~p~~~v~Erl~~~D~~~~~~~Y~i 117 (197)
|++.++ .|+|||++||++++|...+++|.+... ..++..+|..-.+...+.. ...+.-+++++++ ++.+.|+.
T Consensus 1 ~~~~~~--~i~ap~e~Vw~~~td~~~~~~W~~~~~---~~~~~~~G~~~~~~~~~~~-~~~~~~~v~~~~~-~~~l~~~~ 73 (136)
T cd08893 1 KFVYVT--YIRATPEKVWQALTDPEFTRQYWGGTT---VESDWKVGSAFEYRRGDDG-TVDVEGEVLESDP-PRRLVHTW 73 (136)
T ss_pred CeEEEE--EecCCHHHHHHHHcCchhhhheecccc---cccCCcCCCeEEEEeCCCc-ccccceEEEEecC-CCeEEEEE
Confidence 456677 999999999999999999999986521 2233445655445554311 1345667888887 56777776
Q ss_pred EcCCC----CccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029200 118 VGGDH----RLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEH 184 (197)
Q Consensus 118 i~g~~----p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 184 (197)
..+.. +......++.|.|.+ ++ |.+....... +.+ ......+..-+...|+.||+.+|+
T Consensus 74 ~~~~~~~~~~~~~~~v~~~l~~~~-~~---t~l~~~~~~~-~~~---~~~~~~~~~gw~~~l~~Lk~~~e~ 136 (136)
T cd08893 74 RAVWDPEMAAEPPSRVTFEIEPVG-DV---VKLTVTHDGF-PPG---SPTLEGVSGGWPAILSSLKTLLET 136 (136)
T ss_pred ecCCCcccCCCCCEEEEEEEEecC-Cc---EEEEEEecCC-CCc---hhHHHhhhcCHHHHHHHHHHHhcC
Confidence 54322 233566788898876 44 4444433321 122 123445556677889999999884
No 25
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.00 E-value=2.5e-08 Score=75.82 Aligned_cols=136 Identities=15% Similarity=0.099 Sum_probs=84.1
Q ss_pred eEEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEEecCCCCCeEEEEEecCCCCceeEEEEEEEEeCCCcEEEEEE
Q 029200 38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRI 117 (197)
Q Consensus 38 ~v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~~G~~~vG~vR~v~~~~G~p~~~v~Erl~~~D~~~~~~~Y~i 117 (197)
.++.++ +|+||+++||++++|...+++|++... +...-+ .|..-.+.+.++. ...+.-+++++++ .+++.|+.
T Consensus 2 ~i~~~i--~i~a~~e~Vw~~~td~~~~~~W~~~~~-~~~~~~--~~~~g~~~~~~~~-~~~~~~~i~~~~p-~~~l~~~~ 74 (145)
T cd08898 2 RIERTI--LIDAPRERVWRALTDPEHFGQWFGVKL-GPFVVG--EGATGEITYPGYE-HGVFPVTVVEVDP-PRRFSFRW 74 (145)
T ss_pred eeEEEE--EecCCHHHHHHHhcChhhhhhcccccC-CCcccC--CcceeEEecCCCC-ccceEEEEEEeCC-CcEEEEEe
Confidence 577888 999999999999999999999987542 222111 1111233443321 1345678888998 57889987
Q ss_pred EcCC----C---CccceEEEEEEEeccCCCCCeEEEEEEEE-EeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029200 118 VGGD----H---RLKNYSSIVTVHPEVIDGRPGTLVIESFV-VDVPDGNTKDETCYFVEALIKCNLKSLADVSEH 184 (197)
Q Consensus 118 i~g~----~---p~~~y~ati~v~p~~~~g~~~T~v~wt~~-~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 184 (197)
.... . .......+++|.+.+ ++ |.+.++-. |..............+..-....|+.|++.+|.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g---T~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le~ 145 (145)
T cd08898 75 HPPAIDPGEDYSAEPSTLVEFTLEPIA-GG---TLLTVTESGFDALPAERRAEAYRMNEGGWDEQLENLVAYVEA 145 (145)
T ss_pred cCCCcccccccCCCCceEEEEEEEecC-Cc---EEEEEEEcCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhcC
Confidence 5432 1 123456788999986 45 56566543 321110111123445666678888999998873
No 26
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.99 E-value=1.4e-08 Score=79.71 Aligned_cols=128 Identities=16% Similarity=0.125 Sum_probs=87.5
Q ss_pred eEEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEEecCCCCCeEEEEEecCCCCceeEEEEEEEEeCCCcEEEEEE
Q 029200 38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRI 117 (197)
Q Consensus 38 ~v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~~G~~~vG~vR~v~~~~G~p~~~v~Erl~~~D~~~~~~~Y~i 117 (197)
.+..++ +|+||+++||++++|+.++++|.+.. ..+..+|...++++.... ...+..+++++|+ ++++.|+.
T Consensus 12 ~i~~~~--~i~Ap~e~Vw~altdp~~~~~W~~~~-----~~~~~~G~~~~~~~~~~~-~~~~~~~v~e~~p-~~~l~~~~ 82 (157)
T cd08899 12 TLRFER--LLPAPIEDVWAALTDPERLARWFAPG-----TGDLRVGGRVEFVMDDEE-GPNATGTILACEP-PRLLAFTW 82 (157)
T ss_pred EEEEEE--ecCCCHHHHHHHHcCHHHHHhhcCCC-----CCCcccCceEEEEecCCC-CCccceEEEEEcC-CcEEEEEe
Confidence 455555 99999999999999999999999832 123446666656654310 1456788899998 46788888
Q ss_pred EcCCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 029200 118 VGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLA 186 (197)
Q Consensus 118 i~g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~~~ 186 (197)
..++ .....++.|++.+ +| |.+.....+.+. . .....+..-....|+.|++.+|+..
T Consensus 83 ~~~~---~~~~~~~~l~~~~-~g---T~v~~~~~~~~~--~---~~~~~~~~GW~~~L~~Lk~~~e~~~ 139 (157)
T cd08899 83 GEGG---GESEVRFELAPEG-DG---TRLTLTHRLLDE--R---FGAGAVGAGWHLCLDVLEAALEGGP 139 (157)
T ss_pred cCCC---CCceEEEEEEEcC-CC---EEEEEEEeccCc--h---hhhhhhcccHHHHHHHHHHHHcCCC
Confidence 6543 2345678888876 45 555555554321 1 2345556668889999999999754
No 27
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.87 E-value=9.8e-08 Score=73.10 Aligned_cols=133 Identities=13% Similarity=0.031 Sum_probs=81.4
Q ss_pred EEEeeeCCCHHHHHHHHhCCCCCCccCc--cceEEEEecCCCCCeEEEEEe--cCCCCceeEEEEEEEEeCCCcEEEEEE
Q 029200 42 SLVKHIKAPVHLVWSLVRRFDQPQKYKP--FVSRCIVQGDLQIGSVREVNV--KSGLPATTSTERLELLDDEEHIFGMRI 117 (197)
Q Consensus 42 sv~~~I~Apae~VW~vv~Df~~~~~W~P--~v~~~~~~G~~~vG~vR~v~~--~~G~p~~~v~Erl~~~D~~~~~~~Y~i 117 (197)
++++.|+||+++||++++|-..+.+|.+ .......+.+..+|..-++.+ .+|.. ....-+++++++ ++++.|+.
T Consensus 3 ~~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~-~~~~g~v~e~~p-~~~l~~t~ 80 (139)
T cd08894 3 VTTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFDLRPGGRWRFVMHGPDGTD-YPNRIVFLEIEP-PERIVYDH 80 (139)
T ss_pred EEEEEeCCCHHHHHHHhCCHHHHhhccCcCCCcceEEEEEecCCCEEEEEEECCCCCE-ecceEEEEEEcC-CCEEEEEe
Confidence 4566999999999999999999989863 222222222334555533433 23421 224568899998 57888987
Q ss_pred EcCCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029200 118 VGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEH 184 (197)
Q Consensus 118 i~g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 184 (197)
... +. ....+++|.|.+ ++ |.+..+..+..+ ......+...+..-+...|+.|++.+|+
T Consensus 81 ~~~--~~-~~~v~~~~~~~~-~g---T~ltl~~~~~~~-~~~~~~~~~~~~~Gw~~~l~~L~~~l~~ 139 (139)
T cd08894 81 GSG--PP-RFRLTVTFEEQG-GK---TRLTWRQVFPTA-AERCEKIKFGAVEGNEQTLDRLAAYLAR 139 (139)
T ss_pred ccC--CC-cEEEEEEEEECC-CC---EEEEEEEEcCCH-HHHHHHHHhCHHHHHHHHHHHHHHHHhC
Confidence 543 11 245678999876 55 455555455321 1111223344556677888999988874
No 28
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=98.78 E-value=4.5e-07 Score=70.20 Aligned_cols=134 Identities=10% Similarity=-0.035 Sum_probs=76.4
Q ss_pred EEEEEEeeeCCCHHHHHHHHhCCCCCCccCc-c-------ceEEEEecCCCCCeEEEEEecCCCCceeEEEEEEEEeCCC
Q 029200 39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKP-F-------VSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEE 110 (197)
Q Consensus 39 v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P-~-------v~~~~~~G~~~vG~vR~v~~~~G~p~~~v~Erl~~~D~~~ 110 (197)
++.++ .|+||+++||++++| .+.+|.+ . ...|++ +..+|....+...+|. ....-++.++++ .
T Consensus 2 ~~~~~--~i~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~--d~~~GG~~~~~~~~g~--~~~~g~v~~v~p-~ 72 (149)
T cd08891 2 VRKSV--TVPAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVF--EPRAGGRWYEIGEDGT--ECEWGTVLAWEP-P 72 (149)
T ss_pred eEEEE--EecCCHHHHHHHHHh--chhhccCCCcccccCCCccEEE--cccCCcEEEEecCCCc--EeceEEEEEEcC-C
Confidence 45566 999999999999999 4778863 2 134455 2334443333333453 334578888998 4
Q ss_pred cEEEEEEEcC-C-CCcc--ceEEEEEEEeccCCCCCeEEEEEEEEEeCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029200 111 HIFGMRIVGG-D-HRLK--NYSSIVTVHPEVIDGRPGTLVIESFVVDVPDG--NTKDETCYFVEALIKCNLKSLADVSEH 184 (197)
Q Consensus 111 ~~~~Y~ii~g-~-~p~~--~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g--~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 184 (197)
+++.|+-... . .+.. .-..++.|+|.+++++ .+.-+...-...+ ..+......+..-....|+.|++.+|+
T Consensus 73 ~~l~~tw~~~~~~~~~~~~~t~vt~~l~~~~~~gT---~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~~ 149 (149)
T cd08891 73 SRLVFTWQINADWRPDPDKASEVEVRFEAVGAEGT---RVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAAEK 149 (149)
T ss_pred CEEEEEeccCCCcCcCCCCceEEEEEEEECCCCCe---EEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHhcC
Confidence 6787775421 1 1111 2457889998753454 3333322211111 112223333444567788999999885
No 29
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.74 E-value=6.5e-07 Score=68.95 Aligned_cols=133 Identities=10% Similarity=-0.013 Sum_probs=81.0
Q ss_pred EEEeeeCCCHHHHHHHHhCCCCCCccCccc----eEEEEecCCCCCeEEEEEec--CCCCceeEEEEEEEEeCCCcEEEE
Q 029200 42 SLVKHIKAPVHLVWSLVRRFDQPQKYKPFV----SRCIVQGDLQIGSVREVNVK--SGLPATTSTERLELLDDEEHIFGM 115 (197)
Q Consensus 42 sv~~~I~Apae~VW~vv~Df~~~~~W~P~v----~~~~~~G~~~vG~vR~v~~~--~G~p~~~v~Erl~~~D~~~~~~~Y 115 (197)
+++|.++||+++||++++|-..+.+|...- ..+++ +..+|..-.+.+. +|. ...+.-+++++++ .+++.|
T Consensus 3 ~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~--d~r~GG~~~~~~~~~~g~-~~~~~g~~~ei~p-~~~l~~ 78 (142)
T cd07826 3 VITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCEC--DIRVGGSYRYVHRAPDGE-EMGFHGVYHEVTP-PERIVQ 78 (142)
T ss_pred EEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEE--eccCCCEEEEEEECCCCC-EecceEEEEEEcC-CCEEEE
Confidence 456799999999999999999999997421 23333 4445655444443 332 1345678888998 467777
Q ss_pred EEEcCCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 029200 116 RIVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 183 (197)
Q Consensus 116 ~ii~g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E 183 (197)
+-.-...+-.....+++|.+.+ ++ |.+.-+..|.. .......+...+..-+...|+.|++.++
T Consensus 79 t~~~~~~~~~~s~v~~~l~~~~-~g---T~l~l~~~~~~-~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 79 TEEFEGLPDGVALETVTFTELG-GR---TRLTATSRYPS-KEARDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred EeEecCCCCCceEEEEEEEECC-CC---EEEEEEEEeCC-HHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 6532222223456688999876 55 44444445521 1111123344555567778888887765
No 30
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.70 E-value=1e-06 Score=66.96 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=77.2
Q ss_pred EeeeCCCHHHHHHHHhCCCCCCccCccc-----eEEEEecCCCCCeEEEEEe--cCCCCceeEEEEEEEEeCCCcEEEEE
Q 029200 44 VKHIKAPVHLVWSLVRRFDQPQKYKPFV-----SRCIVQGDLQIGSVREVNV--KSGLPATTSTERLELLDDEEHIFGMR 116 (197)
Q Consensus 44 ~~~I~Apae~VW~vv~Df~~~~~W~P~v-----~~~~~~G~~~vG~vR~v~~--~~G~p~~~v~Erl~~~D~~~~~~~Y~ 116 (197)
++.|+||+++||++++|-..+.+|.+.. ..++. +..+|..-.+.+ .+|.....+.-++.++++ ++++.|+
T Consensus 5 ~~~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~--d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p-~~~l~~~ 81 (133)
T cd08897 5 ETTVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAEN--DLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEP-HKLIEYT 81 (133)
T ss_pred EEEeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceeee--cCCcCCEEEEEEEcCCCCcccccceEEEEECC-CCEEEEE
Confidence 4499999999999999999999995432 22332 445665544433 334211235677888998 5789998
Q ss_pred EEcCCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029200 117 IVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEH 184 (197)
Q Consensus 117 ii~g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 184 (197)
..++ ...++.|.|.+ +|+ .+.-+ +.+.+. .....+..-....|+.|++.+|.
T Consensus 82 ~~~~------~~v~~~l~~~~-~gT---~l~l~--~~~~~~----~~~~~~~~GW~~~l~~L~~~le~ 133 (133)
T cd08897 82 MEDG------REVEVEFTEEG-DGT---KVVET--FDAENE----NPVEMQRQGWQAILDNFKKYVES 133 (133)
T ss_pred cCCC------CEEEEEEEECC-CCE---EEEEE--ECCCCC----CcHHHHHHHHHHHHHHHHHHhhC
Confidence 7432 35688999876 554 43332 432111 12233445568899999998873
No 31
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.70 E-value=1.1e-06 Score=67.37 Aligned_cols=132 Identities=19% Similarity=0.104 Sum_probs=78.3
Q ss_pred EEEeeeCCCHHHHHHHHhCCCCCCccCcc-----ceEEEEecCCCCCeEEEEEe--cCCCCceeEEEEEEEEeCCCcEEE
Q 029200 42 SLVKHIKAPVHLVWSLVRRFDQPQKYKPF-----VSRCIVQGDLQIGSVREVNV--KSGLPATTSTERLELLDDEEHIFG 114 (197)
Q Consensus 42 sv~~~I~Apae~VW~vv~Df~~~~~W~P~-----v~~~~~~G~~~vG~vR~v~~--~~G~p~~~v~Erl~~~D~~~~~~~ 114 (197)
+++|.++||+++||++++|-..+.+|... +..+++ +..+|..-.+.+ .+|. .....-++.++++ ++++.
T Consensus 3 ~i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~--d~~~Gg~~~~~~~~~~g~-~~~~~g~~~~~~p-~~~l~ 78 (143)
T cd08900 3 TLERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDEF--DFRVGGREVSRGGPKGGP-EITVEARYHDIVP-DERIV 78 (143)
T ss_pred EEEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEE--ecCCCCEEEEEEECCCCC-EEeeeEEEEEecC-CceEE
Confidence 45678999999999999999999999742 233333 334555433333 2442 1345678888998 46787
Q ss_pred EEEEc--CCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029200 115 MRIVG--GDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEH 184 (197)
Q Consensus 115 Y~ii~--g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 184 (197)
|+... +..+......++.|.+.+ +++ .+.-+.......+. +. ...+..=....|+.|++.+++
T Consensus 79 ~t~~~~~~~~~~~~s~v~~~l~~~~-~gT---~l~~~~~~~~~~~~--~~-~~~~~~GW~~~l~~L~~~l~~ 143 (143)
T cd08900 79 YTYTMHIGGTLLSASLATVEFAPEG-GGT---RLTLTEQGAFLDGD--DD-PAGREQGTAALLDNLAAELER 143 (143)
T ss_pred EEEeeccCCccccceEEEEEEEECC-CCE---EEEEEEEEeccccc--ch-hhhHHHHHHHHHHHHHHHHhC
Confidence 77532 222332345688999876 555 33333222111111 11 223344477788999998874
No 32
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.68 E-value=1.1e-06 Score=67.76 Aligned_cols=134 Identities=16% Similarity=0.077 Sum_probs=77.4
Q ss_pred EEEeeeCCCHHHHHHHHhCCCCCCccCc-c---ceEEEEecCCCCCeEEEEEe--cCCCCceeEEEEEEEEeCCCcEEEE
Q 029200 42 SLVKHIKAPVHLVWSLVRRFDQPQKYKP-F---VSRCIVQGDLQIGSVREVNV--KSGLPATTSTERLELLDDEEHIFGM 115 (197)
Q Consensus 42 sv~~~I~Apae~VW~vv~Df~~~~~W~P-~---v~~~~~~G~~~vG~vR~v~~--~~G~p~~~v~Erl~~~D~~~~~~~Y 115 (197)
.++|.|+||+++||++++|-..+.+|.+ . +..+++ +..+|..-++.+ .+|. ...+.-++.++|+ .+++.|
T Consensus 3 ~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~--d~~~GG~~~~~~~~~~g~-~~~~~g~v~~i~p-~~~l~~ 78 (146)
T cd08896 3 VLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAEL--DLRPGGAFRTVMRGPDGE-EFPNPGCFLEVVP-GERLVF 78 (146)
T ss_pred EEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEE--EeecCcEEEEEEECCCCC-EecceEEEEEEeC-CCEEEE
Confidence 3566999999999999999999999964 2 233333 223444433333 2342 1234677999998 467888
Q ss_pred EEE--cCCCCc-cc-eEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029200 116 RIV--GGDHRL-KN-YSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEH 184 (197)
Q Consensus 116 ~ii--~g~~p~-~~-y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 184 (197)
+-. ++..+. .. ...+++|+|.+ +|+ .+.-+..+..+ ..........+..-+...|+.|++.+|.
T Consensus 79 t~~~~~~~~~~~~~~~~v~~~~~~~~-~gT---~Ltl~~~~~~~-~~~~~~~~~~~~~GW~~~l~~L~~~l~~ 146 (146)
T cd08896 79 TDALTPGWRPAEKPFMTAIITFEDEG-GGT---RYTARARHWTE-ADRKQHEEMGFHDGWGTAADQLAALAES 146 (146)
T ss_pred EEeecCCcCCCCCCcEEEEEEEEecC-CcE---EEEEEEEeCCH-HHHHHHHHcCHHHHHHHHHHHHHHHHhC
Confidence 742 221121 11 45688999876 564 43333333211 0011111122345578889999988863
No 33
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.64 E-value=6.9e-06 Score=66.13 Aligned_cols=141 Identities=11% Similarity=0.041 Sum_probs=83.3
Q ss_pred ceEEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEE-ecCCCCCeEEEEEecCCCC---ceeEEEEEEEEeCCCcE
Q 029200 37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVKSGLP---ATTSTERLELLDDEEHI 112 (197)
Q Consensus 37 ~~v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~-~G~~~vG~vR~v~~~~G~p---~~~v~Erl~~~D~~~~~ 112 (197)
..+..+. .|++|+++||+++.|.+.+++|.|.+.++++ +-.+.--.+-.+.+....| ...+..+-...+..+..
T Consensus 41 ~~~k~~~--~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~ 118 (195)
T cd08876 41 KEFKAVA--EVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGS 118 (195)
T ss_pred EEEEEEE--EEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCCE
Confidence 5677777 8999999999999999999999999999987 4211111222233322211 12222221222221233
Q ss_pred EEEEEEcCCC--C-------ccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029200 113 FGMRIVGGDH--R-------LKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVS 182 (197)
Q Consensus 113 ~~Y~ii~g~~--p-------~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~ 182 (197)
+...+.+.+. | +..+.+.+.++|.+++ . |.+.+...+++.-......+..++.......+++|++++
T Consensus 119 ~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~-~--t~vt~~~~~dp~g~iP~~lv~~~~~~~~~~~l~~l~~~~ 194 (195)
T cd08876 119 VTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNG-K--TRVTYQAYADPGGSIPGWLANAFAKDAPYNTLENLRKQL 194 (195)
T ss_pred EEEEeecCCccCCCCCCeEEceeceeeEEEEECCCC-e--EEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333321 3 4677788999998744 3 676777777653223334445556666667777777765
No 34
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.64 E-value=6.3e-07 Score=71.90 Aligned_cols=144 Identities=15% Similarity=0.108 Sum_probs=96.8
Q ss_pred CCCCceEEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEEecCCCCCeEEEEEecCCCCceeEEEEEEEEeCCCcE
Q 029200 33 DVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHI 112 (197)
Q Consensus 33 ~~~~~~v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~~G~~~vG~vR~v~~~~G~p~~~v~Erl~~~D~~~~~ 112 (197)
...+.+++.+| +|++|+|.||.+.+|+.++|.|+..+.|+.+-.|.. +.-.+.-+.|.- -+..-+|+..- .+..
T Consensus 66 ~~~~i~v~~~V--~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddkr--SrW~~~ap~g~~-v~Wea~it~d~-~~e~ 139 (217)
T COG5637 66 MAKPIEVEVQV--TIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDKR--SRWKANAPLGLE-VEWEAEITKDI-PGER 139 (217)
T ss_pred ccCceEEEEEE--EeCChHHHHHHHHHhhhhhhHHHHhhceeeccCCCc--cceeEcCCCCce-EEEeehhhccC-CCcE
Confidence 45677889999 999999999999999999999999999998732321 222232222321 23445666544 4778
Q ss_pred EEEEEEcCCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHH----HHHHHHHHHHHHHHHHHHhhhhh
Q 029200 113 FGMRIVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETC----YFVEALIKCNLKSLADVSEHLAV 187 (197)
Q Consensus 113 ~~Y~ii~g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~~~~----~~~~~~~~~gL~~Lk~~~E~~~~ 187 (197)
+.|+-++|. .+. -.+.+++.+.. +.+ |.|.=+..|.+|-+....... +..+..+++-|+..|...|.+..
T Consensus 140 I~W~Sl~Ga-~v~-NsG~VrF~~~p-g~~--t~V~v~lsY~~Pgg~~~a~va~~fgeepeqqI~~DL~RFk~~~e~~q~ 213 (217)
T COG5637 140 IQWESLPGA-RVE-NSGAVRFYDAP-GDS--TEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQIQDDLERFKEYQENGQP 213 (217)
T ss_pred EeeecCCCC-cCC-CCccEEeeeCC-CCc--eEEEEEEEecCCccHHHHHHHHHhccchHHHHHHHHHHHHHHHHccCc
Confidence 999998873 222 23457888876 444 677777788776554433322 33455677788888888887443
No 35
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.62 E-value=5.1e-06 Score=64.01 Aligned_cols=130 Identities=21% Similarity=0.072 Sum_probs=78.4
Q ss_pred EEEeeeCCCHHHHHHHHhCCCCCCccCc-c-ceEEEEecCCCCCeEEEE--EecC-------CCCceeEEEEEEEEeCCC
Q 029200 42 SLVKHIKAPVHLVWSLVRRFDQPQKYKP-F-VSRCIVQGDLQIGSVREV--NVKS-------GLPATTSTERLELLDDEE 110 (197)
Q Consensus 42 sv~~~I~Apae~VW~vv~Df~~~~~W~P-~-v~~~~~~G~~~vG~vR~v--~~~~-------G~p~~~v~Erl~~~D~~~ 110 (197)
+++|.|+||+++||++++|...+.+|.+ . +.....+.+..+|..-.+ +..+ |. ...+.-+++++++ +
T Consensus 3 ~~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~-~~~~~g~v~~v~p-~ 80 (146)
T cd08895 3 RLHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGN-TDVFGGRFLELVP-N 80 (146)
T ss_pred EEEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCc-EeeeEEEEEEEcC-C
Confidence 4567999999999999999999999974 2 211111223344544333 3333 21 1245567889998 4
Q ss_pred cEEEEEEEc--CCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 029200 111 HIFGMRIVG--GDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 183 (197)
Q Consensus 111 ~~~~Y~ii~--g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E 183 (197)
+++.|+..- +..+ .....++.|++.+ ++ |.+.++...- +.. ........-....|+.|++.+|
T Consensus 81 ~~i~~~~~~~~~~~~-~~~~v~~~~~~~~-~~---T~lt~~~~~~-~~~----~~~~~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 81 ERIVYTDVFDDPSLS-GEMTMTWTLSPVS-GG---TDVTIVQSGI-PDG----IPPEDCELGWQESLANLAALVE 145 (146)
T ss_pred CEEEEEEEecCCCCC-ceEEEEEEEEecC-CC---EEEEEEEeCC-Cch----hhhhHHHHHHHHHHHHHHHHhc
Confidence 678887532 2223 2346788888876 44 6666665432 221 1123444557777888888876
No 36
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.58 E-value=1.6e-06 Score=67.69 Aligned_cols=106 Identities=21% Similarity=0.244 Sum_probs=69.9
Q ss_pred EEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEEecCCCCCeEEEEEecCCCCceeEE--EEEEEEeCCCcEEEEE
Q 029200 39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTST--ERLELLDDEEHIFGMR 116 (197)
Q Consensus 39 v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~~G~~~vG~vR~v~~~~G~p~~~v~--Erl~~~D~~~~~~~Y~ 116 (197)
++.+. .|++|+++||+.|.|+..+..=.|++.+.+.+|+ ...-.+.++-|.-...++ -++..+|+..++++-+
T Consensus 3 ~~G~f--~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~~g~---e~~~~v~l~ig~l~~~~~g~~~~~~v~~~~~~~~i~ 77 (146)
T COG3427 3 YEGTF--RVAAPPEAVWEFLNDPEQVAACIPGVQSVETNGD---EYTAKVKLKIGPLKGTFSGRVRFVNVDEPPRSITIN 77 (146)
T ss_pred ccceE--EecCCHHHHHHHhcCHHHHHhhcCCcceeeecCC---eEEEEEEEeecceeEEEEEEEEEccccCCCcEEEEE
Confidence 45667 9999999999999999999888999999998664 112222222221012333 3445546666666555
Q ss_pred EEcCCC-CccceEEEEEEEeccCCCCCeEEEEEEEEEe
Q 029200 117 IVGGDH-RLKNYSSIVTVHPEVIDGRPGTLVIESFVVD 153 (197)
Q Consensus 117 ii~g~~-p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~ 153 (197)
.-.+.. .+-+..+.++|.|.+ ++ |++.|....+
T Consensus 78 g~G~~~~g~~~~~~~v~l~~~g-~g---t~v~w~~~~~ 111 (146)
T COG3427 78 GSGGGAAGFADGTVDVQLEPSG-EG---TRVNWFADAN 111 (146)
T ss_pred eecccccceeeeeeEEEEEEcC-CC---cEEEEEEEcc
Confidence 544222 456777788888887 33 6889987765
No 37
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=98.39 E-value=9.5e-06 Score=63.09 Aligned_cols=138 Identities=16% Similarity=0.194 Sum_probs=90.9
Q ss_pred ceEEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEE-ecCCCCCeEEEEEec-CCCCceeEEEEEEEEeCCCcEEE
Q 029200 37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVK-SGLPATTSTERLELLDDEEHIFG 114 (197)
Q Consensus 37 ~~v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~-~G~~~vG~vR~v~~~-~G~p~~~v~Erl~~~D~~~~~~~ 114 (197)
.+++.+. -++.+|++++++|.|...+|+..|.+..+++ +.+ +...+=.+++. .|. ..++.-|.+ +++..+.+.
T Consensus 2 ~~~~~s~--lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~-~~~l~A~l~V~~k~i-~e~F~Trv~-~~~~~~~I~ 76 (146)
T COG2867 2 PQIERTA--LVPYSASQMFDLVNDVESYPEFLPWCSASRVLERN-ERELIAELDVGFKGI-RETFTTRVT-LKPTARSID 76 (146)
T ss_pred CeeEeee--eccCCHHHHHHHHHHHHhCchhccccccceEeccC-cceeEEEEEEEhhhe-eeeeeeeee-ecCchhhhh
Confidence 3556666 8999999999999999999999999988877 432 22233233332 121 134444544 345455777
Q ss_pred EEEEcCCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 029200 115 MRIVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLAVQ 188 (197)
Q Consensus 115 Y~ii~g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~~~~~ 188 (197)
-.+++| |++-..++|++.|.++++ |.+.-..+|+.- ......++..++......|-+.+++-|++
T Consensus 77 ~~l~~G--PFk~L~~~W~F~pl~~~~---ckV~f~ldfeF~----s~ll~~~~g~~f~~~a~~mv~aF~kRA~~ 141 (146)
T COG2867 77 MKLIDG--PFKYLKGGWQFTPLSEDA---CKVEFFLDFEFK----SRLLGALIGPVFKRLASKMVEAFEKRAKE 141 (146)
T ss_pred hhhhcC--ChhhhcCceEEEECCCCc---eEEEEEEEeeeh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777 667788899999987555 455555566532 23445566667777777777777666654
No 38
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.37 E-value=1.3e-05 Score=61.22 Aligned_cols=129 Identities=11% Similarity=-0.036 Sum_probs=76.3
Q ss_pred EEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEEecCCCCCeEEEEEecCCCCceeEEEEEEEEeCCCcEEEEEEE
Q 029200 39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIV 118 (197)
Q Consensus 39 v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~~G~~~vG~vR~v~~~~G~p~~~v~Erl~~~D~~~~~~~Y~ii 118 (197)
++.++ .|+||+++||++++|-..+.+|.+.-...++ .+|..-.+.+.... ..+.-++.++++ .+++.|+..
T Consensus 2 ~~~~~--~i~ap~e~Vw~a~t~p~~l~~W~~~~~~~~~----~~Gg~~~~~~~~~~--~~~~g~~~~~~p-~~~l~~~w~ 72 (136)
T cd08901 2 AKTAM--LIRRPVAEVFEAFVDPEITTKFWFTGSSGRL----EEGKTVTWDWEMYG--ASVPVNVLEIEP-NKRIVIEWG 72 (136)
T ss_pred eeEEE--EecCCHHHHHHHhcCHHHhccccccCCCccc----cCCCEEEEEEEccC--CceEEEEEEEcC-CCEEEEEec
Confidence 45677 9999999999999999999998543223333 24443234343211 134567888988 578888875
Q ss_pred cCCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHH--HHHHHHHHHHHHHHHHHHHhh
Q 029200 119 GGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDET--CYFVEALIKCNLKSLADVSEH 184 (197)
Q Consensus 119 ~g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~~~--~~~~~~~~~~gL~~Lk~~~E~ 184 (197)
... + ....+++|.+.+++++ .+.-+-.. .|.. ..+.. ...+..-....|+.|++.+|.
T Consensus 73 ~~~-~--~s~v~~~l~~~~~ggT---~ltl~~~~-~~~~-~~~~~~~~~~~~~GW~~~L~~L~~~le~ 132 (136)
T cd08901 73 DPG-E--PTTVEWTFEELDDGRT---FVTITESG-FPGT-DDEGLKQALGSTEGWTLVLAGLKAYLEH 132 (136)
T ss_pred CCC-C--CEEEEEEEEECCCCcE---EEEEEECC-CCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 421 2 2446788988763454 33322221 1221 21111 112234467788999999886
No 39
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=98.36 E-value=2.2e-05 Score=57.86 Aligned_cols=122 Identities=13% Similarity=0.007 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHhCCCCCCccCccceEEEEecCCCCCeEEEEEecCCCCceeEEEEEEEEeCCCcEEEEEEEcCCCC-ccc
Q 029200 48 KAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHR-LKN 126 (197)
Q Consensus 48 ~Apae~VW~vv~Df~~~~~W~P~v~~~~~~G~~~vG~vR~v~~~~G~p~~~v~Erl~~~D~~~~~~~Y~ii~g~~p-~~~ 126 (197)
+||+++||+++++...+.+|.+ ....+. +..+|..-++.-.+|. .....-+++++++ ++++.|+....+.+ -..
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W~~-~~~~~~--~~~~Gg~~~~~~~~g~-~~~~~~~v~~~~p-~~~i~~~~~~~~~~~~~~ 75 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQWFT-TSEAEM--DFRPGGSFRFMDPDGG-EFGFDGTVLEVEP-PERIVFTWRMPDDPDGPE 75 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHHSE-EEEEEE--ECSTTEEEEEEETTSE-EEEEEEEEEEEET-TTEEEEEEEEETSSSCEE
T ss_pred CcCHHHHHHHHCCHhHHhhccC-CCccee--eeecCCEEEEEecCCC-CceeeEEEEEEeC-CEEEEEEEEccCCCCCCc
Confidence 6999999999999999999921 222222 2245654434224442 1234446899998 56788886443322 335
Q ss_pred eEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHh
Q 029200 127 YSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYF-VEALIKCNLKSLADVSE 183 (197)
Q Consensus 127 y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~~~~~~-~~~~~~~gL~~Lk~~~E 183 (197)
...++.|.+.+ +++ .+.-+....+. ...... +..-....|++|++.+|
T Consensus 76 ~~v~~~~~~~~-~~T---~l~~~~~~~~~-----~~~~~~~~~~gw~~~l~~L~~~lE 124 (124)
T PF08327_consen 76 SRVTFEFEEEG-GGT---RLTLTHSGFPD-----DDEEEEGMEQGWEQMLDRLKAYLE 124 (124)
T ss_dssp EEEEEEEEEET-TEE---EEEEEEEEEHS-----HHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEcC-CcE---EEEEEEEcCCc-----cHHHHHHHHHHHHHHHHHHHHHhC
Confidence 66778899844 554 33333222111 122222 56668888899999886
No 40
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=98.35 E-value=2.2e-05 Score=59.21 Aligned_cols=122 Identities=12% Similarity=0.069 Sum_probs=72.0
Q ss_pred EEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEEecCCCCCeEEEEEecCCCCceeEEEEEEEEeCCCcEEEEEEEcCC
Q 029200 42 SLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGD 121 (197)
Q Consensus 42 sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~~G~~~vG~vR~v~~~~G~p~~~v~Erl~~~D~~~~~~~Y~ii~g~ 121 (197)
++++.|+||+++||++++|-..+.+|.....+.++ .+|.. +.+.+| .+.-++.++++ ++++.|+-....
T Consensus 3 ~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~~~~~d~----~~GG~--~~~~~g----~~~g~~~~i~p-~~~l~~~w~~~~ 71 (126)
T cd08892 3 SLTETFQVPAEELYEALTDEERVQAFTRSPAKVDA----KVGGK--FSLFGG----NITGEFVELVP-GKKIVQKWRFKS 71 (126)
T ss_pred EEEEEECCCHHHHHHHHCCHHHHHhhcCCCceecC----CCCCE--EEEeCC----ceEEEEEEEcC-CCEEEEEEEcCC
Confidence 34569999999999999999889899753333333 23332 222344 34567888887 467776654322
Q ss_pred CCc-cceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 029200 122 HRL-KNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 183 (197)
Q Consensus 122 ~p~-~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E 183 (197)
.+- .....++.|++.+ +++ .+.-+...- +.. .....-+++-...++.|++.+|
T Consensus 72 ~~~~~~s~v~~~l~~~~-~gT---~ltl~~~g~-~~~----~~~~~~~GW~~~~~~~l~~~~~ 125 (126)
T cd08892 72 WPEGHYSTVTLTFTEKD-DET---ELKLTQTGV-PAG----EEERTREGWERYYFESIKQTFG 125 (126)
T ss_pred CCCCCcEEEEEEEEECC-CCE---EEEEEEECC-CCc----hHHHHHhhHHHHHHHHHHHHhC
Confidence 221 2355688888875 554 433333322 221 1222334444457788888876
No 41
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.32 E-value=1.6e-05 Score=61.32 Aligned_cols=129 Identities=22% Similarity=0.226 Sum_probs=73.8
Q ss_pred eeCCCHHHHHHHHhCCCCCCccCccceEEEEecCCCCCeEE-EEEecCCCCc--eeEEEEEEEEeCCCcEEEEEEEcCCC
Q 029200 46 HIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVR-EVNVKSGLPA--TTSTERLELLDDEEHIFGMRIVGGDH 122 (197)
Q Consensus 46 ~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~~G~~~vG~vR-~v~~~~G~p~--~~v~Erl~~~D~~~~~~~Y~ii~g~~ 122 (197)
+|++|+++||++|.|..++..=.|++.+.+..|+ ..+ .++++-|.-. -..+=++.+.|++.+ +..++.....
T Consensus 4 ~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~~----~~~~~~~v~vG~i~~~~~g~~~~~~~~~~~~-~~~~~~g~g~ 78 (140)
T PF06240_consen 4 EVPAPPEKVWAFLSDPENLARCIPGVESIEKVGD----EYKGKVKVKVGPIKGTFDGEVRITEIDPPES-YTLEFEGRGR 78 (140)
T ss_dssp EECS-HHHHHHHHT-HHHHHHHSTTEEEEEEECT----EEEEEEEEESCCCEEEEEEEEEEEEEETTTE-EEEEEEEEEC
T ss_pred EecCCHHHHHHHhcCHHHHHhhCCCcEEeeecCc----EEEEEEEEEeccEEEEEEEEEEEEEcCCCcc-eEeeeeccCC
Confidence 8999999999999999998778899999987542 221 2333323100 123456667777543 3344433222
Q ss_pred C-ccceEEEEEEEeccCCCCCeEEEEEEEEEeC--C-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029200 123 R-LKNYSSIVTVHPEVIDGRPGTLVIESFVVDV--P-DGNTKDETCYFVEALIKCNLKSLADVS 182 (197)
Q Consensus 123 p-~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~--p-~g~~~~~~~~~~~~~~~~gL~~Lk~~~ 182 (197)
. -.+..+.+++...++ +. |.+.|+.+++. + .......+....+.++..-+++|++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~-~~--T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~l 139 (140)
T PF06240_consen 79 GGGSSASANITLSLEDD-GG--TRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERKL 139 (140)
T ss_dssp TCCEEEEEEEEEEECCC-TC--EEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEEEEEcCCC-CC--cEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 234455666665552 33 88999988863 1 111223455555666666666666554
No 42
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=4.9e-05 Score=59.38 Aligned_cols=134 Identities=12% Similarity=0.024 Sum_probs=74.7
Q ss_pred EEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEEecCCCCCeEEEEEecCCCCceeEEEEEEEEeCCCcEEEEEEEc--
Q 029200 42 SLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVG-- 119 (197)
Q Consensus 42 sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~~G~~~vG~vR~v~~~~G~p~~~v~Erl~~~D~~~~~~~Y~ii~-- 119 (197)
.+++.|+||+++||++++|-..+.+|.. -..++.+...+.+....+...+| +...+..++.++++. +++.|+-..
T Consensus 11 ~~er~i~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~~d~r~gg~~~~~~~~~~g-~~~~~~~~~~~v~p~-~rIv~tw~~~~ 87 (149)
T COG3832 11 EIERLIDAPPEKVFEALTDPELLARWFM-PGGAEFDARTGGGERVRFRGPDG-PVHSFEGEYLEVVPP-ERIVFTWDFDE 87 (149)
T ss_pred EEEEeecCCHHHHHHHhcCHHHHHhhcC-CCCCccceecCCceEEeeecCCC-CeeecceEEEEEcCC-cEEEEEeccCC
Confidence 3444999999999999999999999986 22132211111123334444444 223567788889884 666666543
Q ss_pred CCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHh
Q 029200 120 GDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYF--VEALIKCNLKSLADVSE 183 (197)
Q Consensus 120 g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~~~~~~--~~~~~~~gL~~Lk~~~E 183 (197)
...|...-..+++|.+..+++. +...-...+.. ..+...+.. +..-....|+.|++.++
T Consensus 88 ~~~~~~~~~v~~~l~~~~~g~~--~~~~~~~~~~~---~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 88 DGEPFLKSLVTITLTPEDDGGT--TTLVRTSGGGF---LEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred CCCcccCceEEEEEEEecCCCc--EEEEEEeeccc---cchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 3334445667888988664432 33232222210 111111111 23446667777777665
No 43
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=97.62 E-value=0.0012 Score=50.42 Aligned_cols=85 Identities=9% Similarity=0.021 Sum_probs=50.9
Q ss_pred eCCCHHHHHHHHhCCCCCCccCccceEEEEecCCCCCeEEEEEecCCCCceeEEEEEEEEeCCCcEEEEEEEcCC-CCcc
Q 029200 47 IKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGD-HRLK 125 (197)
Q Consensus 47 I~Apae~VW~vv~Df~~~~~W~P~v~~~~~~G~~~vG~vR~v~~~~G~p~~~v~Erl~~~D~~~~~~~Y~ii~g~-~p~~ 125 (197)
++||+++||++++|-..+.+|.-. ..+++ +..+|..-.+. .+ .+.-+++++|+. +++.|+---.+ .+-.
T Consensus 1 f~ap~e~Vw~A~Tdp~~l~~w~~~-~~~~~--d~~~GG~f~~~--~~----~~~G~~~ev~pp-~rlv~tw~~~~~~~~~ 70 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYTLTRLSLG-SPAEM--DAKVGGKFSLF--NG----SVEGEFTELEKP-KKIVQKWRFRDWEEDV 70 (132)
T ss_pred CCCCHHHHHHHHcCHHHHHHHhcC-CCccc--cCCcCCEEEEe--cC----ceEEEEEEEcCC-CEEEEEEecCCCCCCC
Confidence 589999999999998888888411 22333 23455542232 23 355678888884 56666543221 1211
Q ss_pred ceEEEEEEEeccCCCC
Q 029200 126 NYSSIVTVHPEVIDGR 141 (197)
Q Consensus 126 ~y~ati~v~p~~~~g~ 141 (197)
....++.|.+.+++++
T Consensus 71 ~s~vt~~~~~~~~g~T 86 (132)
T PTZ00220 71 YSKVTIEFRAVEEDHT 86 (132)
T ss_pred ceEEEEEEEeCCCCcE
Confidence 2457888998653454
No 44
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.03 Score=43.24 Aligned_cols=128 Identities=23% Similarity=0.343 Sum_probs=77.2
Q ss_pred eeCCCHHHHHHHHhCCCCCCccCccceEEEE-ecCCCCCeEEEEEec---CCCCc-eeEEEEEEE--EeCCCcEEEEEEE
Q 029200 46 HIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVK---SGLPA-TTSTERLEL--LDDEEHIFGMRIV 118 (197)
Q Consensus 46 ~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~-~G~~~vG~vR~v~~~---~G~p~-~~v~Erl~~--~D~~~~~~~Y~ii 118 (197)
.|+||.|.||+.-+.-+++..-.|--+ +.+ +|+ +++..-++.+. -|.|+ ...+-++++ +|+ ..+|+=.++
T Consensus 9 ~i~aP~E~VWafhsrpd~lq~LTppw~-VV~p~g~-eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~-~~~FtDv~i 85 (153)
T COG4276 9 TITAPHEMVWAFHSRPDALQRLTPPWI-VVLPLGS-EITQGTRIAMGLTPFGLPAGLTWVARHTESGFDN-GSRFTDVCI 85 (153)
T ss_pred EecCCHHHHhhhhcCccHHHhcCCCcE-EeccCCC-cccceeeeeecceeecCCCCceEEEEeeecccCC-cceeeeeee
Confidence 799999999999998888755554433 323 442 34444333332 23332 356677777 887 467888899
Q ss_pred cCCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCH-----HHHHHHHHHHHHHHHHHHHH
Q 029200 119 GGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTK-----DETCYFVEALIKCNLKSLAD 180 (197)
Q Consensus 119 ~g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~-----~~~~~~~~~~~~~gL~~Lk~ 180 (197)
.|++|.-+..-+-++.+.+ ++ |.+.-+..++.|.|..- ..+...++.+|+.--..|++
T Consensus 86 ~gPfp~~~WrHtH~F~~eg-g~---TvliD~Vsye~p~g~~~~~~g~~l~q~~l~~mFr~Rhs~l~r 148 (153)
T COG4276 86 TGPFPALNWRHTHNFVDEG-GG---TVLIDSVSYELPAGTLTGMFGYRLTQLILDLMFRSRHSTLFR 148 (153)
T ss_pred cCCccceeeEEEeeeecCC-Cc---EEEEeeEEeeccCcceechhhhhhHHHHHHHHHHHHHHHHhh
Confidence 9988764455566777765 33 67666777776655221 22334445555544444443
No 45
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.23 E-value=0.062 Score=44.31 Aligned_cols=140 Identities=17% Similarity=0.063 Sum_probs=77.9
Q ss_pred ceEEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEE-ec-CCCCCeEEEEEecC---C--CCceeEEEEEEEEeCC
Q 029200 37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QG-DLQIGSVREVNVKS---G--LPATTSTERLELLDDE 109 (197)
Q Consensus 37 ~~v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~-~G-~~~vG~vR~v~~~~---G--~p~~~v~Erl~~~D~~ 109 (197)
..+.... +|++|+++||+++.|....++|.+.+.++++ +- +....-++. .+.. . .|...+.-+....+..
T Consensus 45 ~~~~ge~--~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~~i~y~-~~~~Pwp~~~~~RDfV~l~~~~~~~~ 121 (205)
T cd08874 45 HGFLGAG--VIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDICLVYL-VHETPLCLLKQPRDFCCLQVEAKEGE 121 (205)
T ss_pred ceEEEEE--EEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCeEEEEE-EecCCCCCCCCCCeEEEEEEEEECCC
Confidence 3344555 7899999999999999999999999999987 42 222222332 2221 1 2223333332223333
Q ss_pred CcEEEEEEEcC-CCC--------ccceEEEEEEEec---cCCCCCeEEEEEEEEEeCCC-CCCHHHHHHHHHHHHHHHHH
Q 029200 110 EHIFGMRIVGG-DHR--------LKNYSSIVTVHPE---VIDGRPGTLVIESFVVDVPD-GNTKDETCYFVEALIKCNLK 176 (197)
Q Consensus 110 ~~~~~Y~ii~g-~~p--------~~~y~ati~v~p~---~~~g~~~T~v~wt~~~~~p~-g~~~~~~~~~~~~~~~~gL~ 176 (197)
...+..+-+.. .+| ...+.+-+.++|. ++ ++ |.+++....++ - |.....+...+...--..++
T Consensus 122 ~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~-~~--t~vty~~q~DP-ggg~iP~~l~N~~~~~~p~~~~ 197 (205)
T cd08874 122 LSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGN-QY--TRVIYIAQVAL-CGPDVPAQLLSSLSKRQPLVIA 197 (205)
T ss_pred cEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCC-Cc--EEEEEEEEECC-CCCCCCHHHHhHHHHhccHHHH
Confidence 32332222322 122 3467788899997 52 33 67777666664 3 34444444333333445556
Q ss_pred HHHHHHh
Q 029200 177 SLADVSE 183 (197)
Q Consensus 177 ~Lk~~~E 183 (197)
.|+..++
T Consensus 198 ~~~~~~~ 204 (205)
T cd08874 198 RLALFLE 204 (205)
T ss_pred HHHHHhh
Confidence 6655544
No 46
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=97.22 E-value=0.033 Score=45.83 Aligned_cols=142 Identities=15% Similarity=0.129 Sum_probs=83.3
Q ss_pred ceEEEEEEeeeCCCHHHHH-HHHhCCCCCCccCccceEEEE-e--cCCCCCeEEEEEecC-CC---CceeEEEEEEEEeC
Q 029200 37 HQCSSSLVKHIKAPVHLVW-SLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKS-GL---PATTSTERLELLDD 108 (197)
Q Consensus 37 ~~v~~sv~~~I~Apae~VW-~vv~Df~~~~~W~P~v~~~~~-~--G~~~vG~vR~v~~~~-G~---p~~~v~Erl~~~D~ 108 (197)
...+... .+++|+++++ .++-|....++|.+.+.++++ + +++ .=-++.+..+- +. +...+.-+...-+.
T Consensus 49 k~~k~e~--~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~-~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~ 125 (209)
T cd08905 49 KVFRLEV--VVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKD-TLITHEVAAETAGNVVGPRDFVSVRCAKRRG 125 (209)
T ss_pred cEEEEEE--EecCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCC-ceEEEEEeccCCCCccCccceEEEEEEEEcC
Confidence 4455555 8999999999 777799999999999999876 3 221 11123322221 10 11233333333333
Q ss_pred CCcEEEEEEEcCC-C-------CccceEEEEEEEeccC-CCCCeEEEEEEEEEeCCCCCCH-HHHHHHHHHHHHHHHHHH
Q 029200 109 EEHIFGMRIVGGD-H-------RLKNYSSIVTVHPEVI-DGRPGTLVIESFVVDVPDGNTK-DETCYFVEALIKCNLKSL 178 (197)
Q Consensus 109 ~~~~~~Y~ii~g~-~-------p~~~y~ati~v~p~~~-~g~~~T~v~wt~~~~~p~g~~~-~~~~~~~~~~~~~gL~~L 178 (197)
.+..+.....+.+ + ....+.+-+.++|.++ .+. |.++|....++ -|... ..+-.++....-..|.+|
T Consensus 126 ~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~--t~v~~~~~~Dp-kG~iP~~lvN~~~~~~~~~~~~~L 202 (209)
T cd08905 126 STCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSK--TKLTWLLSIDL-KGWLPKSIINQVLSQTQVDFANHL 202 (209)
T ss_pred CcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCc--eEEEEEEeecC-CCCCCHHHHHHHhHHhHHHHHHHH
Confidence 2322211112222 2 2456778889999863 244 88899877774 44444 344555566677888999
Q ss_pred HHHHhh
Q 029200 179 ADVSEH 184 (197)
Q Consensus 179 k~~~E~ 184 (197)
+++++.
T Consensus 203 r~~~~~ 208 (209)
T cd08905 203 RQRMAS 208 (209)
T ss_pred HHHHhc
Confidence 998874
No 47
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=97.05 E-value=0.024 Score=44.52 Aligned_cols=123 Identities=19% Similarity=0.213 Sum_probs=62.8
Q ss_pred CHHHHHHHHh-CCCCCCccCccceEEEEecCCCCCeEEEEEecCCCCceeEEEEEEEEeCCCcEEEEEEEcCCCCccceE
Q 029200 50 PVHLVWSLVR-RFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKNYS 128 (197)
Q Consensus 50 pae~VW~vv~-Df~~~~~W~P~v~~~~~~G~~~vG~vR~v~~~~G~p~~~v~Erl~~~D~~~~~~~Y~ii~g~~p~~~y~ 128 (197)
+.++||.-|- ...+...+.|.+.+|++..+....-.|.++|+ + ..++|++..+.+ .++.|.- ...-.
T Consensus 19 Tr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~~~R~v~fg-~---~~v~E~v~~~~~--~~V~f~~------~~Gs~ 86 (149)
T PF08982_consen 19 TREQLWRGLVLKARNPQLFVPGIDSCEVLSESDTVLTREVTFG-G---ATVRERVTLYPP--ERVDFAQ------HDGSS 86 (149)
T ss_dssp -HHHHHHHHHHHHH-GGGT-TT--EEEEEEE-SSEEEEEEEET-T---EEEEEEEEEETT--TEEEESS------SBEEE
T ss_pred CHHHHHHHHHHHHhChhhCccccCeEEEEecCCCeEEEEEEEC-C---cEEEEEEEEeCC--cEEEEEc------CCCCE
Confidence 4578998764 44455678999999998322233566999994 3 689999987755 5777811 11123
Q ss_pred EEEEEEeccCCCCCeEEEEEEEEEeCC---CCCCH-HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 029200 129 SIVTVHPEVIDGRPGTLVIESFVVDVP---DGNTK-DETCYFVEALIKCNLKSLADVSEHLAV 187 (197)
Q Consensus 129 ati~v~p~~~~g~~~T~v~wt~~~~~p---~g~~~-~~~~~~~~~~~~~gL~~Lk~~~E~~~~ 187 (197)
-++.|...+ +|. -++..+|....| +|..+ ......+..+|+.+...--+.+.++++
T Consensus 87 lt~~I~e~~-~g~--L~ltf~ye~~~p~~~~gs~e~~~~~~~~~~ay~~a~~~Ti~~iRe~~~ 146 (149)
T PF08982_consen 87 LTNIISEPE-PGD--LFLTFTYEWRLPGVEPGSPEAKAYQEFYKSAYKEADIDTIRVIRELAK 146 (149)
T ss_dssp EEEEEEEEE-TTE--EEEEEEEEEE----S---------BHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred EEEEEecCC-CCc--EEEEEEEEecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555433 343 344555555433 33333 333455666666665444444444443
No 48
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=97.03 E-value=0.13 Score=42.29 Aligned_cols=141 Identities=13% Similarity=0.051 Sum_probs=77.6
Q ss_pred ceEEEEEEeeeCCCHHHHH-HHHhCCCCCCccCccceEEEE-e--cCCCCCeEEEEEecC-CCC---ceeEEEEEEEEeC
Q 029200 37 HQCSSSLVKHIKAPVHLVW-SLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKS-GLP---ATTSTERLELLDD 108 (197)
Q Consensus 37 ~~v~~sv~~~I~Apae~VW-~vv~Df~~~~~W~P~v~~~~~-~--G~~~vG~vR~v~~~~-G~p---~~~v~Erl~~~D~ 108 (197)
..+.... .+++|+++++ +++.|....++|.+.+.++++ + +++. =-++.+..+- +.| ...+.-+-..-+.
T Consensus 49 ~~fk~~~--~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~~-~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~ 125 (209)
T cd08906 49 KTFILKA--FMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNT-LVSYDVAAGAAGGVVSPRDFVNVRRIERRR 125 (209)
T ss_pred cEEEEEE--EEcCCHHHHHHHHHhChhhccccCccchhhhheeeccCCc-EEEEEEccccccCCCCCCceEEEEEEEecC
Confidence 4455566 8899999998 689999999999999999976 3 2211 0112232221 112 1233333332333
Q ss_pred CCcE-EEEEEEcCCCC-------cc-ceEEEEEEEec-cCCCCCeEEEEEEEEEeCCCCCCH-HHHHHHHHHHHHHHHHH
Q 029200 109 EEHI-FGMRIVGGDHR-------LK-NYSSIVTVHPE-VIDGRPGTLVIESFVVDVPDGNTK-DETCYFVEALIKCNLKS 177 (197)
Q Consensus 109 ~~~~-~~Y~ii~g~~p-------~~-~y~ati~v~p~-~~~g~~~T~v~wt~~~~~p~g~~~-~~~~~~~~~~~~~gL~~ 177 (197)
.... +..++.-..+| .. ...+ +-+.|. .+.+. |.++|....++ -|... ..+-.++....-..|.+
T Consensus 126 ~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G-~~i~~~~~~~~~--t~vt~~~~~Dp-~G~lP~~lvN~~~~~~~~~~~~~ 201 (209)
T cd08906 126 DRYVSAGISTTHSHKPPLSKYVRGENGPGG-FVVLKSASNPSV--CTFIWILNTDL-KGRLPRYLIHQSLAATMFEFASH 201 (209)
T ss_pred CcEEEEEEEEecCCCCCCCCeEEEeeeccE-EEEEECCCCCCc--eEEEEEEecCC-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 2321 22233222222 22 2233 334442 22334 77788777764 44444 34556666666678899
Q ss_pred HHHHHhh
Q 029200 178 LADVSEH 184 (197)
Q Consensus 178 Lk~~~E~ 184 (197)
|+++++.
T Consensus 202 LR~~~~~ 208 (209)
T cd08906 202 LRQRIRD 208 (209)
T ss_pred HHHHHhh
Confidence 9998875
No 49
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=96.62 E-value=0.19 Score=39.44 Aligned_cols=136 Identities=19% Similarity=0.150 Sum_probs=68.8
Q ss_pred EEEEEeeeCCCHHHHHHHHhCCCCC----CccC---ccceEEEEecCCCCCeEEEEEec-CCCCc--------eeEEEEE
Q 029200 40 SSSLVKHIKAPVHLVWSLVRRFDQP----QKYK---PFVSRCIVQGDLQIGSVREVNVK-SGLPA--------TTSTERL 103 (197)
Q Consensus 40 ~~sv~~~I~Apae~VW~vv~Df~~~----~~W~---P~v~~~~~~G~~~vG~vR~v~~~-~G~p~--------~~v~Erl 103 (197)
+.++ ++++|+|+||+++.|-.-+ .... ..+.+++.+|++ +-....-.++ +.+|. ....++.
T Consensus 2 ~~~~--~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g-~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~ 78 (159)
T PF10698_consen 2 EHSV--EYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDG-VRVTVRQTVPADKLPSAARKFVGGDLRVTRT 78 (159)
T ss_pred eEEE--EcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCe-EEEEEEEecChhhCCHHHHHhcCCCeEEEEE
Confidence 3455 9999999999999873311 1111 123333333332 1111111222 23331 1122344
Q ss_pred EEE---eCCCcEEEEEEEcCCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 029200 104 ELL---DDEEHIFGMRIVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLAD 180 (197)
Q Consensus 104 ~~~---D~~~~~~~Y~ii~g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~ 180 (197)
..+ ++..++.+|++.-...|+ ...++++|.|.+ ++ |.+.....+.+........+++++...+...|+...+
T Consensus 79 e~w~~~~~g~~~g~~~~~~~G~P~-~~~G~~~L~~~~-~g---t~~~~~g~v~v~VPlvGgkiE~~v~~~~~~~~~~e~~ 153 (159)
T PF10698_consen 79 ETWTPLDDGRRTGTFTVSIPGAPV-SISGTMRLRPDG-GG---TRLTVEGEVKVKVPLVGGKIEKAVAENLRKLLEAEQE 153 (159)
T ss_pred EEEecCCCCeEEEEEEEEecCceE-EEEEEEEEecCC-CC---EEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHH
Confidence 445 445566666653322455 578899999965 45 4445555554221223334555555556666665555
Q ss_pred HHh
Q 029200 181 VSE 183 (197)
Q Consensus 181 ~~E 183 (197)
..+
T Consensus 154 ~~~ 156 (159)
T PF10698_consen 154 FTA 156 (159)
T ss_pred HHH
Confidence 444
No 50
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=96.55 E-value=0.076 Score=43.54 Aligned_cols=139 Identities=13% Similarity=0.101 Sum_probs=80.0
Q ss_pred eEEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEE-ecCCCCCeEEEEEecCCCCc-eeEEEEEE------EEeCC
Q 029200 38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVKSGLPA-TTSTERLE------LLDDE 109 (197)
Q Consensus 38 ~v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~-~G~~~vG~vR~v~~~~G~p~-~~v~Erl~------~~D~~ 109 (197)
.+...- .|++|++.+.+++.|.+.+++|.|.+.+++. +..+..-.+-.+.+. .|. -.-||-+. .+++
T Consensus 47 ~~k~e~--~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~~~~v~y~~~~--~PwPv~~RD~v~~~~~~~~~~~- 121 (215)
T cd08877 47 SLRMEG--EIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGRADKVCYLRVD--LPWPLSNREAVFRGFGVDRLEE- 121 (215)
T ss_pred EEEEEE--EecCChhHeEEEEehhhhHhhhcccceeeEEEeecCCceEEEEEEEe--CceEecceEEEEEEEEEeeecc-
Confidence 344444 8899999999999999999999999888764 321111122223332 121 11123332 2323
Q ss_pred CcEEEEEE--EcCC----------C--------CccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCC-CCHHHHHHHHH
Q 029200 110 EHIFGMRI--VGGD----------H--------RLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDG-NTKDETCYFVE 168 (197)
Q Consensus 110 ~~~~~Y~i--i~g~----------~--------p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g-~~~~~~~~~~~ 168 (197)
+..+.-.+ ++.+ . ....+.+-+.++|.+++ + |.+......+|--. .....+-.+..
T Consensus 122 ~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~-~--t~v~~~~~~DP~g~~IP~~liN~~~k 198 (215)
T cd08877 122 NGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPT-K--CYLRFVANVDPKMSLVPKSLLNFVAR 198 (215)
T ss_pred CCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCC-C--eEEEEEEEcCCCcccCCHHHHHHHHH
Confidence 33332211 1100 1 13467778899998744 4 67677666664222 33445556666
Q ss_pred HHHHHHHHHHHHHHhh
Q 029200 169 ALIKCNLKSLADVSEH 184 (197)
Q Consensus 169 ~~~~~gL~~Lk~~~E~ 184 (197)
.+....|.+|++.+++
T Consensus 199 ~~~~~~~~~l~k~~~~ 214 (215)
T cd08877 199 KFAGLLFEKIQKAAKN 214 (215)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6777888999888765
No 51
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=96.46 E-value=0.37 Score=39.24 Aligned_cols=142 Identities=14% Similarity=0.076 Sum_probs=79.0
Q ss_pred EEEEEEeeeCCCHHHHHH-HHhCCCCCCccCccceEEEE-ec-CCCCCeEEEEEecC-CCC---ceeEEEEEEEEeCCCc
Q 029200 39 CSSSLVKHIKAPVHLVWS-LVRRFDQPQKYKPFVSRCIV-QG-DLQIGSVREVNVKS-GLP---ATTSTERLELLDDEEH 111 (197)
Q Consensus 39 v~~sv~~~I~Apae~VW~-vv~Df~~~~~W~P~v~~~~~-~G-~~~vG~vR~v~~~~-G~p---~~~v~Erl~~~D~~~~ 111 (197)
+.... .+++|+++|+. ++.|....++|.+.+.++++ +. +...--+..+.... +.| ...+--+....++...
T Consensus 50 ~k~~~--~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~~ 127 (208)
T cd08868 50 FRLTG--VLDCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENCY 127 (208)
T ss_pred EEEEE--EEcCCHHHHHHHHHcCccccceecCcccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCCeE
Confidence 44445 88999999986 56799999999999988876 32 21111112222111 111 1222223333333222
Q ss_pred EEEEEEEcCC-C-------CccceEEEEEEEeccCC-CCCeEEEEEEEEEeCCCCCCHHH-HHHHHHHHHHHHHHHHHHH
Q 029200 112 IFGMRIVGGD-H-------RLKNYSSIVTVHPEVID-GRPGTLVIESFVVDVPDGNTKDE-TCYFVEALIKCNLKSLADV 181 (197)
Q Consensus 112 ~~~Y~ii~g~-~-------p~~~y~ati~v~p~~~~-g~~~T~v~wt~~~~~p~g~~~~~-~~~~~~~~~~~gL~~Lk~~ 181 (197)
.+...-++.+ . ....+.+.+.++|.+++ +. |.+.|....++ -|..... +-.++....-..+++|+++
T Consensus 128 ~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~--t~v~~~~~~Dp-~G~iP~~lvN~~~~~~~~~~~~~Lr~~ 204 (208)
T cd08868 128 LSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNK--CNFTWLLNTDL-KGWLPQYLVDQALASVLLDFMKHLRKR 204 (208)
T ss_pred EEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCc--eEEEEEEEECC-CCCCcceeeehhhHHHHHHHHHHHHHH
Confidence 2222223311 1 23456678899998632 33 78888777764 3444332 2334455566778899998
Q ss_pred Hhhh
Q 029200 182 SEHL 185 (197)
Q Consensus 182 ~E~~ 185 (197)
++++
T Consensus 205 ~~~~ 208 (208)
T cd08868 205 IATL 208 (208)
T ss_pred HhhC
Confidence 8764
No 52
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=96.31 E-value=0.14 Score=42.26 Aligned_cols=139 Identities=11% Similarity=0.128 Sum_probs=82.1
Q ss_pred eeCCCHHHHHHHHhCCCCCCccCccceEEEEecCC-CCCeEEEEEecCCCCc--eeEEEEEEEEeCCCcEEEEEE-EcCC
Q 029200 46 HIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDL-QIGSVREVNVKSGLPA--TTSTERLELLDDEEHIFGMRI-VGGD 121 (197)
Q Consensus 46 ~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~~G~~-~vG~vR~v~~~~G~p~--~~v~Erl~~~D~~~~~~~Y~i-i~g~ 121 (197)
.|+.++++++.++++...++.+.|.++++.+.-.+ +-+..-.+++ |.|+ ....-+++-.++ . +.|.. .++.
T Consensus 75 ligysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~~~~kA~LeV--GFk~l~E~y~S~Vt~~~p-~--l~kt~~~d~r 149 (227)
T KOG3177|consen 75 LIGYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPSGPLKADLEV--GFKPLDERYTSNVTCVKP-H--LTKTVCADGR 149 (227)
T ss_pred hhCCCHHHHHHHHHhHHHhhccccceeccceeecCCCCCceeeEEe--cCcccchhheeeeEEecc-c--ceEEeecccc
Confidence 69999999999999999999999999999883211 1223333443 3321 223344443333 2 44544 4443
Q ss_pred CCccceEEEEEEEeccC-CCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 029200 122 HRLKNYSSIVTVHPEVI-DGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSEHLAVQDRTE 192 (197)
Q Consensus 122 ~p~~~y~ati~v~p~~~-~g~~~T~v~wt~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~~~~~~~~~ 192 (197)
+ +......|++.|..+ .++ |.+.....|+...-.-...+.-+.....+...++-.+++.++.+..+-.
T Consensus 150 L-F~~L~t~Wsf~pg~~~p~t--c~ldf~v~FeF~S~lhs~va~~Ffd~V~~~~v~AF~~ra~~~~gp~~~i 218 (227)
T KOG3177|consen 150 L-FNHLITIWSFKPGPNIPRT--CTLDFSVSFEFKSLLHSQVATIFFDEVVKQMVNAFEQRARKLYGPESLI 218 (227)
T ss_pred H-HHhhhheeeeccCCCCCCe--EEEEEEEEEEehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccccC
Confidence 2 455666789988752 333 5556666665322222234444555556666677777777766655433
No 53
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=96.21 E-value=0.55 Score=38.61 Aligned_cols=136 Identities=10% Similarity=-0.008 Sum_probs=75.3
Q ss_pred ee-CCCHHHHHHHHhCCCCCCccCccceEEEE-ecCCCCCeEEEEEecCCCC---ceeEEEEEEEEeCCCcEE-EEEEEc
Q 029200 46 HI-KAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVKSGLP---ATTSTERLELLDDEEHIF-GMRIVG 119 (197)
Q Consensus 46 ~I-~Apae~VW~vv~Df~~~~~W~P~v~~~~~-~G~~~vG~vR~v~~~~G~p---~~~v~Erl~~~D~~~~~~-~Y~ii~ 119 (197)
.+ ++|++.+++++.|.....+|.+.+..+++ +--+.--.+....+....| ...+.-+...-++....+ ..++..
T Consensus 54 ~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~vi~~~sv~~ 133 (222)
T cd08871 54 IFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEYIIFNHSVKH 133 (222)
T ss_pred EeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEEEEEeccccC
Confidence 55 79999999999998888999999988865 3211112333333322211 122222322223311111 112211
Q ss_pred CCCC-------ccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHhhh
Q 029200 120 GDHR-------LKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDE-TCYFVEALIKCNLKSLADVSEHL 185 (197)
Q Consensus 120 g~~p-------~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~~-~~~~~~~~~~~gL~~Lk~~~E~~ 185 (197)
...| ...+.+-+.++|.++++ |.+.+....++ -|..... +-.++....-..|++|++.+++-
T Consensus 134 ~~~P~~~g~VR~~~~~~g~~i~p~~~~~---t~vt~~~~~Dp-~G~IP~~lvN~~~~~~~~~~l~~l~k~~~~y 203 (222)
T cd08871 134 KKYPPRKGFVRAISLLTGYLIRPTGPKG---CTLTYVTQNDP-KGSLPKWVVNKATTKLAPKVMKKLHKAALKY 203 (222)
T ss_pred CCCCCCCCeEEeEEEccEEEEEECCCCC---EEEEEEEecCC-CCCcCHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 1122 23466778899987444 67777766663 4544443 33444555667788888887763
No 54
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=96.17 E-value=0.56 Score=38.32 Aligned_cols=140 Identities=14% Similarity=0.090 Sum_probs=77.7
Q ss_pred eEEEEEEeee-CCCHHHHHHHHhCCCCCCccCccceEEEE-ecCCCCCe-EEEEEecCCCC---ceeEEEEEEEEe-CCC
Q 029200 38 QCSSSLVKHI-KAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGS-VREVNVKSGLP---ATTSTERLELLD-DEE 110 (197)
Q Consensus 38 ~v~~sv~~~I-~Apae~VW~vv~Df~~~~~W~P~v~~~~~-~G~~~vG~-vR~v~~~~G~p---~~~v~Erl~~~D-~~~ 110 (197)
...... ++ ++|++.+.+++.|....++|.+.+.++++ +-+..-|. +-...+...-| ...+--+-...+ +..
T Consensus 51 ~~k~~~--~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~ 128 (209)
T cd08870 51 EYLVRG--VFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDRS 128 (209)
T ss_pred EEEEEE--EEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCCE
Confidence 344444 66 67999999999999888999999888876 32211122 12222221111 123333333333 222
Q ss_pred cEEEEEEEcC-------CCCccceEEEEEEEec--cCCCCCeEEEEEEEEEeCCCCCCH-HHHHHHHHHHHHHHHHHHHH
Q 029200 111 HIFGMRIVGG-------DHRLKNYSSIVTVHPE--VIDGRPGTLVIESFVVDVPDGNTK-DETCYFVEALIKCNLKSLAD 180 (197)
Q Consensus 111 ~~~~Y~ii~g-------~~p~~~y~ati~v~p~--~~~g~~~T~v~wt~~~~~p~g~~~-~~~~~~~~~~~~~gL~~Lk~ 180 (197)
..+....+.. -..+..+.+.+.++|. ++++ |.+..++..+| .|... ..+-.++....-..|++|++
T Consensus 129 ~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~---t~~~~~~~~dp-~G~IP~wlvN~~~~~~~~~~l~~l~~ 204 (209)
T cd08870 129 YVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQG---SACEVTYFHNP-DGGIPRELAKLAVKRGMPGFLKKLEN 204 (209)
T ss_pred EEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCc---eEEEEEEEECC-CCCCCHHHHHHHHHhhhHHHHHHHHH
Confidence 2222222222 1135688999999998 5333 56566666653 44443 44555555666667778877
Q ss_pred HHh
Q 029200 181 VSE 183 (197)
Q Consensus 181 ~~E 183 (197)
++.
T Consensus 205 a~~ 207 (209)
T cd08870 205 ALR 207 (209)
T ss_pred HHh
Confidence 764
No 55
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=96.16 E-value=0.55 Score=38.13 Aligned_cols=135 Identities=16% Similarity=0.029 Sum_probs=78.5
Q ss_pred EEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEE-e--cCCCCCeEEEEEecCCCC---ceeEEEEEEEEeCCCc-
Q 029200 39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKSGLP---ATTSTERLELLDDEEH- 111 (197)
Q Consensus 39 v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~-~--G~~~vG~vR~v~~~~G~p---~~~v~Erl~~~D~~~~- 111 (197)
++... +|+|++++|++.+-|.. ++|.+.+.++++ + +++ =.+-...+..-.| ...+.-|....+.++.
T Consensus 46 ~K~~~--~v~a~~~~v~~~l~d~r--~~Wd~~~~~~~vie~id~~--~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~ 119 (197)
T cd08869 46 WRAST--EVEAPPEEVLQRILRER--HLWDDDLLQWKVVETLDED--TEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGA 119 (197)
T ss_pred EEEEE--EeCCCHHHHHHHHHHHH--hccchhhheEEEEEEecCC--cEEEEEEeeCCCCCCCceEEEEEEEEecCCCCc
Confidence 46666 88999999999887753 799999999976 3 221 1222222221111 1223333333333232
Q ss_pred -EEEEEEEcC--CCC-----ccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 029200 112 -IFGMRIVGG--DHR-----LKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 183 (197)
Q Consensus 112 -~~~Y~ii~g--~~p-----~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E 183 (197)
.+..+-++. ..| ...+.+-+.++|.++++ |.+++....+| -|....-+......+.-..|++|++-+.
T Consensus 120 ~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~---t~vty~~~~Dp-~G~iP~wl~N~~~~~~~~~~~~l~~~~~ 195 (197)
T cd08869 120 CVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGK---SRVTHICRVDL-RGRSPEWYNKVYGHLCARELLRIRDSFR 195 (197)
T ss_pred EEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCC---eEEEEEEEECC-CCCCCceeecchHhHHHHHHHHHHhhcc
Confidence 223332321 122 34566788999987444 67777767763 5555555566666777788888887653
No 56
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=95.75 E-value=0.89 Score=37.20 Aligned_cols=135 Identities=15% Similarity=0.175 Sum_probs=79.0
Q ss_pred ee-CCCHHHHHHHHhCCCCCCccCccceEEEE-ecCCCCCe-EEEEEecCCCCc---eeEEEEEEEEeCCCcEE--EEEE
Q 029200 46 HI-KAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGS-VREVNVKSGLPA---TTSTERLELLDDEEHIF--GMRI 117 (197)
Q Consensus 46 ~I-~Apae~VW~vv~Df~~~~~W~P~v~~~~~-~G~~~vG~-vR~v~~~~G~p~---~~v~Erl~~~D~~~~~~--~Y~i 117 (197)
++ ++|++.+.+++.|.+..++|.+.+.++++ +-+...+. +-.+.+....|. ..+--+-...|+.+..+ ...-
T Consensus 52 ~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~s 131 (207)
T cd08911 52 SFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEENKLIVIVSKA 131 (207)
T ss_pred EEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCCCEEEEEEec
Confidence 45 99999999999999988999999988876 42212222 222322212121 34444544556544332 1111
Q ss_pred EcC-C-------CCccceEEEEEEEecc---CCCCCeEEEEEEEEEeCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHhh
Q 029200 118 VGG-D-------HRLKNYSSIVTVHPEV---IDGRPGTLVIESFVVDVPDGNTKD-ETCYFVEALIKCNLKSLADVSEH 184 (197)
Q Consensus 118 i~g-~-------~p~~~y~ati~v~p~~---~~g~~~T~v~wt~~~~~p~g~~~~-~~~~~~~~~~~~gL~~Lk~~~E~ 184 (197)
++. . ..+..+.+.+.++|.+ ++| +.+.+++..+ |-|.... .+-.+.....-..|++|++++.+
T Consensus 132 v~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~---~~~~~~~~~d-PgG~IP~~lvN~~~~~~~~~~l~~l~~a~~~ 206 (207)
T cd08911 132 VQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPG---FEFVLTYFDN-PGVNIPSYITSWVAMSGMPDFLERLRNAALK 206 (207)
T ss_pred CCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCC---eEEEEEEEeC-CCCccCHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 221 1 1356889999999973 344 4445554444 4454443 44455566677778888887754
No 57
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=95.30 E-value=1.3 Score=36.24 Aligned_cols=141 Identities=15% Similarity=0.100 Sum_probs=74.6
Q ss_pred EEEEEEeeeCCCHHHHHHHHhCCCCC--CccCccceEEEE-ec-CCCCCeEEEEEecC--C---CCceeEEE-EEEEEeC
Q 029200 39 CSSSLVKHIKAPVHLVWSLVRRFDQP--QKYKPFVSRCIV-QG-DLQIGSVREVNVKS--G---LPATTSTE-RLELLDD 108 (197)
Q Consensus 39 v~~sv~~~I~Apae~VW~vv~Df~~~--~~W~P~v~~~~~-~G-~~~vG~vR~v~~~~--G---~p~~~v~E-rl~~~D~ 108 (197)
..... .+++++++|++++-|..+. ++|.+.+.++++ +- +....-++. ..+. + .|...+.- .....++
T Consensus 48 ~k~e~--~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d 124 (208)
T cd08903 48 YKGEG--IVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYED 124 (208)
T ss_pred EEEEE--EecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCC
Confidence 44444 8899999999999887654 799999999987 42 211112222 2221 0 01122222 2222333
Q ss_pred CCcEEEEEEEcCC-CC-----cc--ceEEEEEEEeccC-CCCCeEEEEEEEEEeCCCCCCH-HHHHHHHHHHHHHHHHHH
Q 029200 109 EEHIFGMRIVGGD-HR-----LK--NYSSIVTVHPEVI-DGRPGTLVIESFVVDVPDGNTK-DETCYFVEALIKCNLKSL 178 (197)
Q Consensus 109 ~~~~~~Y~ii~g~-~p-----~~--~y~ati~v~p~~~-~g~~~T~v~wt~~~~~p~g~~~-~~~~~~~~~~~~~gL~~L 178 (197)
....+.+..++.+ .| ++ .+.+-..+.|... .+. |.++|....++ -|... ..+-.++......-|.+|
T Consensus 125 ~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~--t~v~~~~~~Dp-kG~iP~~lvn~~~~~~~~~~~~~L 201 (208)
T cd08903 125 GTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDK--TQLVSFFQTDL-SGYLPQTVVDSFFPASMAEFYNNL 201 (208)
T ss_pred ceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCc--eEEEEEEEecc-CCCcCHHHHHHHhhHHHHHHHHHH
Confidence 2222233333332 22 11 2212334454421 233 78888877774 34444 344556656666788999
Q ss_pred HHHHhhh
Q 029200 179 ADVSEHL 185 (197)
Q Consensus 179 k~~~E~~ 185 (197)
++.+.++
T Consensus 202 r~~~~~~ 208 (208)
T cd08903 202 TKAVKAL 208 (208)
T ss_pred HHHHhhC
Confidence 9888653
No 58
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=95.26 E-value=1.6 Score=36.87 Aligned_cols=108 Identities=13% Similarity=0.059 Sum_probs=62.8
Q ss_pred EEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEE-e--cCCCCCeEEEEEecC---CCCceeEEEEEEE--EeCCC
Q 029200 39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKS---GLPATTSTERLEL--LDDEE 110 (197)
Q Consensus 39 v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~-~--G~~~vG~vR~v~~~~---G~p~~~v~Erl~~--~D~~~ 110 (197)
+.... .+++|+++|++++.|....++|.+.+.++++ + ++ ..+-.+ ..++. -.|...+.-+-.. .+..+
T Consensus 79 fk~e~--~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~-d~~iyy-~~~p~PwPvk~RDfV~~~s~~~~~~~~~ 154 (235)
T cd08873 79 FCVEL--KVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGE-DDGIYH-TTMPSLTSEKPNDFVLLVSRRKPATDGD 154 (235)
T ss_pred EEEEE--EecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCC-CcEEEE-EEcCCCCCCCCceEEEEEEEEeccCCCC
Confidence 45555 7899999999999999999999999999987 3 32 223333 33321 1111222222222 22211
Q ss_pred -cEEEEEEEcCC-C-------CccceEEEEEEEeccCCCCCeEEEEEEEEEe
Q 029200 111 -HIFGMRIVGGD-H-------RLKNYSSIVTVHPEVIDGRPGTLVIESFVVD 153 (197)
Q Consensus 111 -~~~~Y~ii~g~-~-------p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~ 153 (197)
..+..+-+..+ . ....+.+-+.+.|.++++ |.+.+....+
T Consensus 155 ~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~---t~VtY~~~~d 203 (235)
T cd08873 155 PYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTC---TEVSYYNETN 203 (235)
T ss_pred eEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCc---EEEEEEEEcC
Confidence 23333333311 1 246778899999988554 4545544444
No 59
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=95.26 E-value=1.4 Score=36.30 Aligned_cols=137 Identities=9% Similarity=-0.005 Sum_probs=83.0
Q ss_pred ceEEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEE-e--cCCCCCeEEEEEecC--CCCc-eeEEEEEEEEeCCC
Q 029200 37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKS--GLPA-TTSTERLELLDDEE 110 (197)
Q Consensus 37 ~~v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~-~--G~~~vG~vR~v~~~~--G~p~-~~v~Erl~~~D~~~ 110 (197)
..++.++ +|+|++++|...+-|- .+.|-+.+.++.+ + +++. .+-...+.. ..+. ..+.-|.-..+..+
T Consensus 52 ~~~r~~~--~i~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld~~~--~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~ 125 (204)
T cd08908 52 RLWRTTI--EVPAAPEEILKRLLKE--QHLWDVDLLDSKVIEILDSQT--EIYQYVQNSMAPHPARDYVVLRTWRTNLPK 125 (204)
T ss_pred EEEEEEE--EeCCCHHHHHHHHHhh--HHHHHHHhhheEeeEecCCCc--eEEEEEccCCCCCCCcEEEEEEEEEEeCCC
Confidence 3577777 8999999999998776 6789998888765 3 2211 122222211 1111 23333343334444
Q ss_pred cEEEEEEEcCC---CC-----ccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029200 111 HIFGMRIVGGD---HR-----LKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVS 182 (197)
Q Consensus 111 ~~~~Y~ii~g~---~p-----~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~ 182 (197)
..+.-.+.+.. .| +..+.+.+.++|.++++ |.+++....+ |-|..........+.+...-|..|++-+
T Consensus 126 g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~---t~vtyi~~~D-PgG~iP~W~~N~~g~~~~~~~~~~r~sf 201 (204)
T cd08908 126 GACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGK---SKLTYMCRID-LRGHMPEWYTKSFGHLCAAEVVKIRDSF 201 (204)
T ss_pred CeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCc---EEEEEEEEeC-CCCCCcHHHHhhHHHHHHHHHHHHHhhc
Confidence 43432222111 23 34567788999987544 5666666676 4677777777777888888888888766
Q ss_pred h
Q 029200 183 E 183 (197)
Q Consensus 183 E 183 (197)
.
T Consensus 202 ~ 202 (204)
T cd08908 202 S 202 (204)
T ss_pred c
Confidence 4
No 60
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=95.11 E-value=1.2 Score=34.66 Aligned_cols=114 Identities=18% Similarity=0.068 Sum_probs=63.4
Q ss_pred CCceEEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEE-ecCCCCCeEEEEEecCCCCc---eeEEEEEEEEeCCC
Q 029200 35 HDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVKSGLPA---TTSTERLELLDDEE 110 (197)
Q Consensus 35 ~~~~v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~-~G~~~vG~vR~v~~~~G~p~---~~v~Erl~~~D~~~ 110 (197)
+...+.... ++++|+++||+++.|....++|.+.+.++++ +-....-.+....+....|. ..+--+-...++++
T Consensus 37 ~~~~~k~~~--~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~ 114 (193)
T cd00177 37 GLKLLKAEG--VIPASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDG 114 (193)
T ss_pred CceeEEEEE--EECCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEEEEcCCC
Confidence 345566666 8899999999999998888999999988876 32111123333444322221 22222222223322
Q ss_pred cEEEEEE--EcCC-CC-------ccceEEEEEEEeccCCCCCeEEEEEEEEEeC
Q 029200 111 HIFGMRI--VGGD-HR-------LKNYSSIVTVHPEVIDGRPGTLVIESFVVDV 154 (197)
Q Consensus 111 ~~~~Y~i--i~g~-~p-------~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~ 154 (197)
.+.... ++.+ .| ...+.+-+.++|.+ ++. |.+.+....++
T Consensus 115 -~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~-~~~--~~vt~~~~~D~ 164 (193)
T cd00177 115 -TYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLD-PGK--TKVTYVLQVDP 164 (193)
T ss_pred -eEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECC-CCC--EEEEEEEeeCC
Confidence 222222 2221 12 12334567888886 344 67777777764
No 61
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=94.90 E-value=1.6 Score=34.96 Aligned_cols=142 Identities=10% Similarity=-0.101 Sum_probs=79.5
Q ss_pred eEEEEEEeeeCCCHHHH-HHHHhCCCCCCccCccceEEEE-ec-CCCCCeEEEEEecCCC-Cc---eeEEEEEEEEeC-C
Q 029200 38 QCSSSLVKHIKAPVHLV-WSLVRRFDQPQKYKPFVSRCIV-QG-DLQIGSVREVNVKSGL-PA---TTSTERLELLDD-E 109 (197)
Q Consensus 38 ~v~~sv~~~I~Apae~V-W~vv~Df~~~~~W~P~v~~~~~-~G-~~~vG~vR~v~~~~G~-p~---~~v~Erl~~~D~-~ 109 (197)
.+.... .++++++++ =+++.|....++|.+.+.++++ +- +.. ..+.......-. |. ..+--+-...++ .
T Consensus 46 ~~k~~~--~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~~-~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~ 122 (206)
T smart00234 46 ASRAVG--VVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDNG-TVIYHYVSKFVAGPVSPRDFVFVRYWRELVDG 122 (206)
T ss_pred EEEEEE--EEecChHHHHHHHHhcccchhhCchhcccEEEEEEECCC-CeEEEEEEecccCcCCCCeEEEEEEEEEcCCC
Confidence 444445 789999874 4688898888999999988876 31 111 244443332111 21 222222222332 2
Q ss_pred CcEEEEEEEcCC-CC-------ccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCC-HHHHHHHHHHHHHHHHHHHHH
Q 029200 110 EHIFGMRIVGGD-HR-------LKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNT-KDETCYFVEALIKCNLKSLAD 180 (197)
Q Consensus 110 ~~~~~Y~ii~g~-~p-------~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~-~~~~~~~~~~~~~~gL~~Lk~ 180 (197)
...+..+-++.+ .| ...+.+-+.++|.+++ . |.+.|....++ -|.. ...+..++.......+.+|++
T Consensus 123 ~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~-~--t~vt~~~~~D~-~G~iP~~lvn~~~~~~~~~~~~~~~~ 198 (206)
T smart00234 123 SYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNG-P--SKVTWVSHADL-KGWLPHWLVRSLIKSGLAEFAKTWVA 198 (206)
T ss_pred cEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCC-C--eEEEEEEEEec-CCCccceeehhhhhhhHHHHHHHHHH
Confidence 223333222222 12 3467788899998744 3 67777776663 3333 233445555666667777887
Q ss_pred HHhhhh
Q 029200 181 VSEHLA 186 (197)
Q Consensus 181 ~~E~~~ 186 (197)
.+++..
T Consensus 199 ~~~~~~ 204 (206)
T smart00234 199 TLQKHC 204 (206)
T ss_pred HHHHHh
Confidence 777654
No 62
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=93.89 E-value=2.9 Score=33.89 Aligned_cols=141 Identities=10% Similarity=-0.065 Sum_probs=75.7
Q ss_pred ceEEEEEEeeeCCCHHHHHHHHhC--CCCCCccCccceEEEE-ecCCCCCeEEEEEecC-CCC----ceeE-EEEEEEEe
Q 029200 37 HQCSSSLVKHIKAPVHLVWSLVRR--FDQPQKYKPFVSRCIV-QGDLQIGSVREVNVKS-GLP----ATTS-TERLELLD 107 (197)
Q Consensus 37 ~~v~~sv~~~I~Apae~VW~vv~D--f~~~~~W~P~v~~~~~-~G~~~vG~vR~v~~~~-G~p----~~~v-~Erl~~~D 107 (197)
..+.... .|++++++|.+++.| .....+|.+.+.++++ +.-+..=.+.....+. +.+ ...+ ......++
T Consensus 46 ~~~k~~~--~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~ 123 (206)
T cd08867 46 HLYRAEG--IVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKISEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYE 123 (206)
T ss_pred EEEEEEE--EEcCCHHHHHHHHHhcCccccccccccccceEEEEEeCCCeEEEEEEccccccCccCCcceEEEEEEEEeC
Confidence 3466666 889999999999998 6667899999999876 4211101122222221 111 1222 12223344
Q ss_pred CCCcEEEEEEEcCC-C-C------ccceEEEEEEEeccC-CCCCeEEEEEEEEEeCCCCCCHH-HHHHHHHHHHHHHHHH
Q 029200 108 DEEHIFGMRIVGGD-H-R------LKNYSSIVTVHPEVI-DGRPGTLVIESFVVDVPDGNTKD-ETCYFVEALIKCNLKS 177 (197)
Q Consensus 108 ~~~~~~~Y~ii~g~-~-p------~~~y~ati~v~p~~~-~g~~~T~v~wt~~~~~p~g~~~~-~~~~~~~~~~~~gL~~ 177 (197)
+....+...-++.+ . | ...+.+-+-+.|..+ .+. |.++|....++ -|.... .+-.++......-+.+
T Consensus 124 ~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~--t~~~~~~~~Dp-kG~iP~~lvn~~~~~~~~~~~~~ 200 (206)
T cd08867 124 DNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDK--SFLVLYVQTDL-RGMIPQSLVESAMPSNLVNFYTD 200 (206)
T ss_pred CCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCc--eEEEEEEEecc-CCCCcHHHHHhhhhhhHHHHHHH
Confidence 32222233333222 1 2 223445566777542 233 78788877774 344443 3444556666667777
Q ss_pred HHHHH
Q 029200 178 LADVS 182 (197)
Q Consensus 178 Lk~~~ 182 (197)
|++++
T Consensus 201 lr~~~ 205 (206)
T cd08867 201 LVKGV 205 (206)
T ss_pred HHHhc
Confidence 87764
No 63
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=93.82 E-value=2.5 Score=32.92 Aligned_cols=64 Identities=19% Similarity=0.197 Sum_probs=45.4
Q ss_pred CCHHHHHHHH-hCCCCCCccCccceEEEE-ecCCCCCeEEEEEecCCCCceeEEEEEEEEeCCCcEEEEEEEc
Q 029200 49 APVHLVWSLV-RRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVG 119 (197)
Q Consensus 49 Apae~VW~vv-~Df~~~~~W~P~v~~~~~-~G~~~vG~vR~v~~~~G~p~~~v~Erl~~~D~~~~~~~Y~ii~ 119 (197)
-+.+++|.-| ........+.|.+.+|++ +.++ --..|.++|+. ..++|++..+.+ .++.|.+..
T Consensus 17 LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~-~~l~Rel~f~~----~~v~e~vt~~~~--~~v~f~~~~ 82 (141)
T cd08863 17 LTRAQLWRGLVLRAREPQLFVPGLDRCEVLSESG-TVLERELTFGP----AKIRETVTLEPP--SRVHFLQAD 82 (141)
T ss_pred cCHHHHHhHHHhhhCCchhcccccceEEEEecCC-CEEEEEEEECC----ceEEEEEEecCC--cEEEEEecC
Confidence 3568999765 455555678999999998 3221 13459999975 379999886654 578888765
No 64
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=93.45 E-value=4.2 Score=34.35 Aligned_cols=37 Identities=5% Similarity=0.213 Sum_probs=32.5
Q ss_pred eEEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEE
Q 029200 38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV 76 (197)
Q Consensus 38 ~v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~ 76 (197)
.+.... .+++|+++|+++|.|....++|.+.+.+|++
T Consensus 82 ~fK~e~--~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~v 118 (240)
T cd08913 82 SFKVEM--VVHVDAAQAFLLLSDLRRRPEWDKHYRSCEL 118 (240)
T ss_pred EEEEEE--EEcCCHHHHHHHHhChhhhhhhHhhccEEEE
Confidence 344445 7899999999999999999999999999987
No 65
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=91.93 E-value=6 Score=32.33 Aligned_cols=138 Identities=14% Similarity=0.146 Sum_probs=75.8
Q ss_pred eEEEEEEeeeC-CCHHHHHHHHhCCCCCCccCccceEEEE-ecCCCCCeEEEEEecCCCCc---eeE-EEEEEEEeCCCc
Q 029200 38 QCSSSLVKHIK-APVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVKSGLPA---TTS-TERLELLDDEEH 111 (197)
Q Consensus 38 ~v~~sv~~~I~-Apae~VW~vv~Df~~~~~W~P~v~~~~~-~G~~~vG~vR~v~~~~G~p~---~~v-~Erl~~~D~~~~ 111 (197)
.++... +++ ++++.+.+++.|....++|.+.+.++.- +.++ -.+-.+.++..-|. ..+ .-+...+|..+.
T Consensus 50 ~~k~~~--~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~~~~~~--~~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~~~ 125 (207)
T cd08910 50 EYKVFG--VLEDCSPSLLADVYMDLEYRKQWDQYVKELYEKECDG--ETVIYWEVKYPFPLSNRDYVYIRQRRDLDVEGR 125 (207)
T ss_pred EEEEEE--EEcCCCHHHHHHHHhCHHHHHHHHHHHHhheeecCCC--CEEEEEEEEcCCCCCCceEEEEEEeccccCCCC
Confidence 344444 666 7999999999999988999998766421 2221 12222333211111 222 112223343333
Q ss_pred EEEE---EEEcCC--------CCccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHH-HHHHHHHHHHHHHHHHHH
Q 029200 112 IFGM---RIVGGD--------HRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKD-ETCYFVEALIKCNLKSLA 179 (197)
Q Consensus 112 ~~~Y---~ii~g~--------~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~-~~~~~~~~~~~~gL~~Lk 179 (197)
.+.. ..++-+ ..+..|.+.+.++|.++++ |.+.+.+..+ |-|.... .+-.+........|++|+
T Consensus 126 ~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~---t~i~~~~~~D-PgG~IP~wlvN~~~~~~~~~~l~~l~ 201 (207)
T cd08910 126 KIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKG---SKVFMYYFDN-PGGMIPSWLINWAAKNGVPNFLKDMQ 201 (207)
T ss_pred eEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCc---eEEEEEEEeC-CCCcchHHHHHHHHHHhhHHHHHHHH
Confidence 2111 122211 1356889999999987544 5666666665 3454443 344555566667778887
Q ss_pred HHHh
Q 029200 180 DVSE 183 (197)
Q Consensus 180 ~~~E 183 (197)
+++.
T Consensus 202 ka~~ 205 (207)
T cd08910 202 KACQ 205 (207)
T ss_pred HHHh
Confidence 7764
No 66
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=91.02 E-value=8.7 Score=32.45 Aligned_cols=37 Identities=27% Similarity=0.542 Sum_probs=33.4
Q ss_pred eEEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEE
Q 029200 38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV 76 (197)
Q Consensus 38 ~v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~ 76 (197)
.+.... .+++|++++.++|.|....++|.+.+.++++
T Consensus 79 ~fk~e~--~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~v 115 (236)
T cd08914 79 SVWVEK--HVKRPAHLAYRLLSDFTKRPLWDPHFLSCEV 115 (236)
T ss_pred EEEEEE--EEcCCHHHHHHHHhChhhhchhHHhhceEEE
Confidence 466666 8899999999999999999999999999987
No 67
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=87.20 E-value=15 Score=30.14 Aligned_cols=140 Identities=9% Similarity=-0.060 Sum_probs=74.8
Q ss_pred ceEEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEE-e--cCCCCCeEEEEEecC---C--CCceeEEEEEE-EEe
Q 029200 37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKS---G--LPATTSTERLE-LLD 107 (197)
Q Consensus 37 ~~v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~-~--G~~~vG~vR~v~~~~---G--~p~~~v~Erl~-~~D 107 (197)
.....+. .|++++++||+++.+-....+|.+.+.++++ + +++. .+-....+. + .|...+--|-. .++
T Consensus 46 kl~k~eg--vi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~~T--~I~~~~~~~~~~~~vspRDfV~vr~~~r~~ 121 (204)
T cd08904 46 NLYRVEG--IIPESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDSDT--FICHTITQSFAMGSISPRDFVDLVHIKRYE 121 (204)
T ss_pred eEEEEEE--EecCCHHHHHHHHhccchhhhhcccccceeeEEEeCCCc--EEEEEecccccCCcccCceEEEEEEEEEeC
Confidence 3444455 8999999999999987666899999988876 3 2211 121111121 1 11223333222 234
Q ss_pred CCCcEEEEEEEcCCC--Cc------cceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCH-HHHHHHHHHHHHHHHHHH
Q 029200 108 DEEHIFGMRIVGGDH--RL------KNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTK-DETCYFVEALIKCNLKSL 178 (197)
Q Consensus 108 ~~~~~~~Y~ii~g~~--p~------~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~-~~~~~~~~~~~~~gL~~L 178 (197)
.....+.+..++.+- |- ..+.+=+-+.|..++.+ .|.++|....++ -|... ..+-.+|...+-.-+.+|
T Consensus 122 ~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~-~t~l~~~~~~Dl-kG~lP~~vv~~~~~~~~~~f~~~~ 199 (204)
T cd08904 122 GNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPA-YSKLVMFVQPEL-RGNLSRSVIEKTMPTNLVNLILDA 199 (204)
T ss_pred CCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCC-ceEEEEEEEeCC-CCCCCHHHHHHHhHHHHHHHHHHH
Confidence 432223333344331 22 33445567788753311 266688777664 35444 344455555555556666
Q ss_pred HHHH
Q 029200 179 ADVS 182 (197)
Q Consensus 179 k~~~ 182 (197)
++.+
T Consensus 200 ~~~~ 203 (204)
T cd08904 200 KDGI 203 (204)
T ss_pred HHhc
Confidence 6654
No 68
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=76.47 E-value=29 Score=25.86 Aligned_cols=97 Identities=7% Similarity=0.022 Sum_probs=58.4
Q ss_pred EEeeeCCCHHHHHHHHhCCCC--CCccCccceEEEEecCCCCCeEEEEEecCCCCceeEEEEEEEEeCCCcEEEEEEEcC
Q 029200 43 LVKHIKAPVHLVWSLVRRFDQ--PQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGG 120 (197)
Q Consensus 43 v~~~I~Apae~VW~vv~Df~~--~~~W~P~v~~~~~~G~~~vG~vR~v~~~~G~p~~~v~Erl~~~D~~~~~~~Y~ii~g 120 (197)
|++++++|++.+++.|-+--. +.+-... ... ..+. .|..-.-.++.+ ...+=+|+++.+ ++.|.+....
T Consensus 3 I~~~l~v~a~~ff~~l~~s~~~DI~~~tgk--~~~-~~~L-~G~~Y~K~~~~~---~~~~v~It~~~~-~~~Y~~~~~s- 73 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLIDSLLYDIKQATGK--KLP-VKQL-KGFSYQKKFKNK---REAKVKITEYEP-NKRYAATFSS- 73 (120)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHcCC--CCC-hhhc-CCcEEEEEcCCC---CEEEEEEEEEcC-CCEEEEEEEe-
Confidence 456889999999998765211 1111110 000 0112 454444445555 356667999987 5778887755
Q ss_pred CCCccceEEEEEEEeccCCCCCeEEEEEEEEEe
Q 029200 121 DHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVD 153 (197)
Q Consensus 121 ~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~ 153 (197)
+...+..+.++.|.++ |. |.+..+..+.
T Consensus 74 --~~~~~~i~Y~i~~~~~-~~--~~v~y~E~~~ 101 (120)
T PF11687_consen 74 --SRGTFTISYEIEPLDD-GS--IEVTYEEEYE 101 (120)
T ss_pred --cCCCEEEEEEEEECCC-Cc--EEEEEEEEEc
Confidence 3445777889999984 44 5667777774
No 69
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=74.12 E-value=41 Score=26.50 Aligned_cols=142 Identities=15% Similarity=0.017 Sum_probs=79.6
Q ss_pred CCceEEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEE-e--cCCCCCeEEEEEecCCC--Ccee---EEEEEEEE
Q 029200 35 HDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKSGL--PATT---STERLELL 106 (197)
Q Consensus 35 ~~~~v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~-~--G~~~vG~vR~v~~~~G~--p~~~---v~Erl~~~ 106 (197)
+-..+.... .++++++++...+.+-.. .|.+.+.++++ + .++ ..+....+.... |... +--+....
T Consensus 44 ~~~~~k~~~--~v~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~~~~--~~i~~~~~~~~~~~p~~~RDfv~~~~~~~ 117 (206)
T PF01852_consen 44 PIKMFKAEG--VVPASPEQVVEDLLDDRE--QWDKMCVEAEVLEQIDED--TDIVYFVMKSPWPGPVSPRDFVFLRSWRK 117 (206)
T ss_dssp SCEEEEEEE--EESSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEEETT--EEEEEEEEE-CTTTTSSEEEEEEEEEEEE
T ss_pred cceEEEEEE--EEcCChHHHHHHHHhhHh--hcccchhhheeeeecCCC--CeEEEEEecccCCCCCCCcEEEEEEEEEE
Confidence 334456666 899999977777665444 89999988876 3 222 345444444322 3222 21222222
Q ss_pred eCCC-cEEEEEEEcCC-C-C-------ccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHH-HHHHHHHHHHHHHH
Q 029200 107 DDEE-HIFGMRIVGGD-H-R-------LKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKD-ETCYFVEALIKCNL 175 (197)
Q Consensus 107 D~~~-~~~~Y~ii~g~-~-p-------~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~-~~~~~~~~~~~~gL 175 (197)
+..+ ..+..+=++.+ . + ...+.+.+.++|.++ +. |.+.+....++ -|.... .+..++.......+
T Consensus 118 ~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~-~~--~~vt~~~~~D~-~G~iP~~~~n~~~~~~~~~~~ 193 (206)
T PF01852_consen 118 DEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGD-GR--TRVTYVSQVDP-KGWIPSWLVNMVVKSQPPNFL 193 (206)
T ss_dssp CTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETT-CE--EEEEEEEEEES-SSSSHHHHHHHHHHHHHHHHH
T ss_pred eccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccC-CC--ceEEEEEEECC-CCCChHHHHHHHHHHhHHHHH
Confidence 3322 22333223222 2 2 246667888999984 43 67777777764 455543 44455566666777
Q ss_pred HHHHHHHhhhh
Q 029200 176 KSLADVSEHLA 186 (197)
Q Consensus 176 ~~Lk~~~E~~~ 186 (197)
+.|.+.+++..
T Consensus 194 ~~~~~~~~~~~ 204 (206)
T PF01852_consen 194 KNLRKALKKQK 204 (206)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHhc
Confidence 77777777643
No 70
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=73.06 E-value=52 Score=27.18 Aligned_cols=136 Identities=10% Similarity=-0.007 Sum_probs=73.4
Q ss_pred EEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEE-e--cCCCCCeE-EEEEecCCC----CceeEEEE-EEEEeCC
Q 029200 39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSV-REVNVKSGL----PATTSTER-LELLDDE 109 (197)
Q Consensus 39 v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~-~--G~~~vG~v-R~v~~~~G~----p~~~v~Er-l~~~D~~ 109 (197)
...+. .|+..+++||+.+.+-....+|.+.+++|++ + +++ =.+ |.++.+... |...+-=+ ...+.+
T Consensus 49 ~R~Eg--vv~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~d--t~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d- 123 (202)
T cd08902 49 YKAQG--VVEDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEEN--CCVMRYTTAGQLLNIISPREFVDFSYTTQYED- 123 (202)
T ss_pred EEEEE--EecCCHHHHHHHHhcccchhcccchhhheeHhhhhcCC--cEEEEEEcccCCcCccCccceEEEEEEEEeCC-
Confidence 34444 7799999999999987667899999999987 4 332 122 444443221 21222222 222332
Q ss_pred CcEEEE--EEEcCCCC-----ccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCH-HHHHHHHHHHHHHHHHHHHHH
Q 029200 110 EHIFGM--RIVGGDHR-----LKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTK-DETCYFVEALIKCNLKSLADV 181 (197)
Q Consensus 110 ~~~~~Y--~ii~g~~p-----~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~-~~~~~~~~~~~~~gL~~Lk~~ 181 (197)
++ ++= ++.-.+.| -.++-+=+-+.|..++-+ .|.++|....+. -|... ..+..+|..-+-.-+.+|+++
T Consensus 124 ~~-~s~gvs~~~~~~ppg~VRgen~p~g~i~~Pl~~~p~-k~~~t~~lq~DL-kG~LPqsiIdq~~~~~~~~F~~~Lrk~ 200 (202)
T cd08902 124 GL-LSCGVSIEYEEARPNFVRGFNHPCGWFCVPLKDNPS-HSLLTGYIQTDL-RGMLPQSAVDTAMASTLVNFYSDLKKA 200 (202)
T ss_pred Ce-EEEEeeecCCCCCCCeEeecccccEEEEEECCCCCC-ceEEEEEEEecC-CCCccHHHHHHHhhHHHHHHHHHHHHh
Confidence 22 221 11111122 134445567888774433 366788777764 35444 333444444444555666665
Q ss_pred H
Q 029200 182 S 182 (197)
Q Consensus 182 ~ 182 (197)
+
T Consensus 201 ~ 201 (202)
T cd08902 201 L 201 (202)
T ss_pred c
Confidence 4
No 71
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=72.93 E-value=52 Score=27.11 Aligned_cols=137 Identities=14% Similarity=0.040 Sum_probs=80.7
Q ss_pred ceEEEEEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEE-e-cC--CCCCeEEEEEecCCCC---ceeEEEEEEEEeCC
Q 029200 37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-Q-GD--LQIGSVREVNVKSGLP---ATTSTERLELLDDE 109 (197)
Q Consensus 37 ~~v~~sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~-~-G~--~~vG~vR~v~~~~G~p---~~~v~Erl~~~D~~ 109 (197)
..++.++ +|++|++.|-..+-+ ..+.|-..+.+.++ + -+ ..++. ..+..-.| ...+.-|--..|..
T Consensus 52 k~~r~~~--ei~~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~ld~~tdi~~---y~~~~~~P~~~RD~v~~R~w~~~~~ 124 (205)
T cd08909 52 RLWKVSV--EVEAPPSVVLNRVLR--ERHLWDEDFLQWKVVETLDKQTEVYQ---YVLNCMAPHPSRDFVVLRSWRTDLP 124 (205)
T ss_pred EEEEEEE--EeCCCHHHHHHHHHh--hHhhHHhhcceeEEEEEeCCCcEEEE---EEeecCCCCCCCEEEEEEEEEEeCC
Confidence 4566677 999999999877755 45789887766654 3 12 22222 22221111 13333443333432
Q ss_pred CcE--EEEEEEcCC-CC------ccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 029200 110 EHI--FGMRIVGGD-HR------LKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLAD 180 (197)
Q Consensus 110 ~~~--~~Y~ii~g~-~p------~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~ 180 (197)
.-. +.+.-++.+ .| ...+.+-+.++|.++ |. |.+.+-...+ |-|....-..+.++.+..+-|..|++
T Consensus 125 ~G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~-g~--trvt~i~~vD-pkG~~P~W~~n~~g~~~~~~~~~~r~ 200 (205)
T cd08909 125 KGACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGS-GK--SRLTHICRVD-LKGHSPEWYNKGFGHLCAAEAARIRN 200 (205)
T ss_pred CCcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCC-CC--EEEEEEEEec-CCCCChHHHHHhHHHHHHHHHHHHHh
Confidence 222 222222322 12 223456678899884 44 7878877777 46777777788888888888888887
Q ss_pred HHhh
Q 029200 181 VSEH 184 (197)
Q Consensus 181 ~~E~ 184 (197)
-+..
T Consensus 201 sf~~ 204 (205)
T cd08909 201 SFQP 204 (205)
T ss_pred hccC
Confidence 6643
No 72
>KOG2936 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.26 E-value=50 Score=28.91 Aligned_cols=85 Identities=12% Similarity=0.150 Sum_probs=53.1
Q ss_pred EEEeeeCCCHHHHHHHHhCCCCCCccCccceEEEEecCCCCCeEEEEEecCCCCceeEEEEEEEEeCCCc-EEEEEEEcC
Q 029200 42 SLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEH-IFGMRIVGG 120 (197)
Q Consensus 42 sv~~~I~Apae~VW~vv~Df~~~~~W~P~v~~~~~~G~~~vG~vR~v~~~~G~p~~~v~Erl~~~D~~~~-~~~Y~ii~g 120 (197)
+.+.+++++++++++.+.|-..+..|.-.-. .++.+ .-|..-.+ +| .+.-+++++.+.+. .+.|++-+
T Consensus 176 ~l~~tfn~~~~eLy~~fld~~rv~~wt~S~a--~l~~~-~~g~f~lf---~G----nVtg~~~~~e~~K~Iv~kWrl~~- 244 (301)
T KOG2936|consen 176 SLSATFNCRVDELYEIFLDPERVKAWTRSPA--ELEAD-PGGKFSLF---DG----NVTGEFLELEKNKKIVMKWRLKS- 244 (301)
T ss_pred eehhhcCCCHHHHHHHHhcHHHHHHhcCChh--hcccC-CCCceEEe---cc----cceeeeeeecCCCeEEEEEeccc-
Confidence 3444899999999999999999888875322 33322 11333322 45 35555666666443 35788844
Q ss_pred CCCccceEEEEEEEeccCC
Q 029200 121 DHRLKNYSSIVTVHPEVID 139 (197)
Q Consensus 121 ~~p~~~y~ati~v~p~~~~ 139 (197)
.| ..+.|||+++....+
T Consensus 245 -Wp-~~~~atI~~~f~~~~ 261 (301)
T KOG2936|consen 245 -WP-DGHDATITLTFYESQ 261 (301)
T ss_pred -CC-CCccceEEEEEecCC
Confidence 33 246778888887543
No 73
>COG4891 Uncharacterized conserved protein [Function unknown]
Probab=63.21 E-value=45 Score=24.14 Aligned_cols=84 Identities=11% Similarity=-0.171 Sum_probs=47.1
Q ss_pred eeEEEEEEEEeCCCcEEEEEEEcCCCCccceEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 029200 97 TTSTERLELLDDEEHIFGMRIVGGDHRLKNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLK 176 (197)
Q Consensus 97 ~~v~Erl~~~D~~~~~~~Y~ii~g~~p~~~y~ati~v~p~~~~g~~~T~v~wt~~~~~p~g~~~~~~~~~~~~~~~~gL~ 176 (197)
..++-++..+.+ .+.++|.---....+-+-.-++.+++.. ++. |.+.-+..|.+.........+.-+...|...=.
T Consensus 9 m~~~P~il~~~P-~reL~W~~~~~~~~l~~~~~~~~le~~~-~~~--t~~~q~e~F~Gvlv~fv~~lr~~~~~~f~~~n~ 84 (93)
T COG4891 9 MKIRPVILGLEP-LRELTWLGNVRFPGLLDGERYFELEALW-GGR--TRFAQGESFSGVLVPFVSELRRGLTASFENMNP 84 (93)
T ss_pred eEEeeEEEeccc-chheeeecccccceEEeeEEEEEEeecC-Ccc--ceeeccceecceeeccchhhhccchhhhhhhCH
Confidence 456677777877 5789997533211233444467899987 344 565666666432111111133344445555557
Q ss_pred HHHHHHhh
Q 029200 177 SLADVSEH 184 (197)
Q Consensus 177 ~Lk~~~E~ 184 (197)
+|++++|+
T Consensus 85 alr~raE~ 92 (93)
T COG4891 85 ALRARAEA 92 (93)
T ss_pred HHHhhhhc
Confidence 77777775
No 74
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=34.64 E-value=4.7e+02 Score=25.90 Aligned_cols=107 Identities=17% Similarity=0.130 Sum_probs=57.1
Q ss_pred eeCCCHHHHHHHHhCCCCC-CccCccceEEEE-ec-CCCCCeEEEEEecCC------CCceeEEEEEEE-EeCCCcEEEE
Q 029200 46 HIKAPVHLVWSLVRRFDQP-QKYKPFVSRCIV-QG-DLQIGSVREVNVKSG------LPATTSTERLEL-LDDEEHIFGM 115 (197)
Q Consensus 46 ~I~Apae~VW~vv~Df~~~-~~W~P~v~~~~~-~G-~~~vG~vR~v~~~~G------~p~~~v~Erl~~-~D~~~~~~~Y 115 (197)
+|+|++++||+.|.+.+.. .+|-..+.++++ +- ++. =.+-..++..+ .|...+--|... .++....+.|
T Consensus 234 VV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~h-tdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~ 312 (719)
T PLN00188 234 VVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGH-TAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLF 312 (719)
T ss_pred EecCCHHHHHHHHhccCcccccchhcccceEEEEEecCC-eEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEee
Confidence 6999999999999877743 689998888876 31 110 12221122211 011223233322 3332233334
Q ss_pred EEEcCC--CCc------cceEEEEEEEec-cCCCCCeEEEEEEEEEe
Q 029200 116 RIVGGD--HRL------KNYSSIVTVHPE-VIDGRPGTLVIESFVVD 153 (197)
Q Consensus 116 ~ii~g~--~p~------~~y~ati~v~p~-~~~g~~~T~v~wt~~~~ 153 (197)
.=++.+ .|. ..+.+-+.+.|. .++|...|.+.|....+
T Consensus 313 ~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtD 359 (719)
T PLN00188 313 RSREHENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQID 359 (719)
T ss_pred eeeecCCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEc
Confidence 334432 122 234566788884 22333458889876665
Done!