Query 029201
Match_columns 197
No_of_seqs 136 out of 1131
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 14:47:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029201.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029201hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_D RP13, YS3, 40S ribosoma 100.0 1.8E-69 6.3E-74 460.8 16.3 190 1-190 1-190 (240)
2 3iz6_B 40S ribosomal protein S 100.0 6E-70 2E-74 461.4 4.7 192 1-192 1-192 (227)
3 2zkq_c 40S ribosomal protein S 100.0 1.6E-67 5.4E-72 450.1 10.3 192 1-192 1-192 (243)
4 2xzm_C KH domain containing pr 100.0 4.6E-65 1.6E-69 435.2 16.3 191 3-193 6-196 (243)
5 3j20_C 30S ribosomal protein S 100.0 9.7E-64 3.3E-68 419.5 14.9 187 5-195 1-189 (210)
6 3r8n_C 30S ribosomal protein S 100.0 1.6E-63 5.4E-68 417.5 12.0 183 6-193 16-206 (206)
7 3i1m_C 30S ribosomal protein S 100.0 1.1E-62 3.6E-67 418.6 12.7 183 6-193 17-207 (233)
8 3bbn_C Ribosomal protein S3; s 100.0 1.2E-62 4.2E-67 415.5 10.7 186 6-193 17-218 (218)
9 2vqe_C 30S ribosomal protein S 100.0 1.3E-61 4.5E-66 413.6 15.2 183 6-193 17-207 (239)
10 1wh9_A 40S ribosomal protein S 99.9 7.5E-25 2.6E-29 162.3 7.8 87 13-99 4-90 (92)
11 2pt7_G HP1451, hypothetical pr 96.1 0.01 3.4E-07 47.0 5.8 109 18-126 4-123 (152)
12 3gku_A Probable RNA-binding pr 90.6 0.51 1.7E-05 39.4 6.3 105 19-124 64-186 (225)
13 3iev_A GTP-binding protein ERA 73.6 4.6 0.00016 34.0 5.3 48 44-93 238-292 (308)
14 1ega_A Protein (GTP-binding pr 73.5 8.2 0.00028 32.3 6.8 35 44-78 229-270 (301)
15 2cxc_A NUSA; transcription ter 72.7 3.2 0.00011 32.2 3.7 60 20-86 10-71 (144)
16 1wf3_A GTP-binding protein; GT 68.3 5.8 0.0002 33.5 4.7 42 44-88 228-278 (301)
17 1zzk_A Heterogeneous nuclear r 65.9 3.1 0.0001 28.5 2.0 30 45-74 8-37 (82)
18 2opv_A KHSRP protein; KH domai 65.4 1.6 5.6E-05 30.2 0.5 30 45-74 15-44 (85)
19 1we8_A Tudor and KH domain con 64.6 1.8 6E-05 31.3 0.6 33 43-75 14-46 (104)
20 1dtj_A RNA-binding neurooncolo 64.3 2.5 8.7E-05 28.3 1.3 28 46-73 5-32 (76)
21 2axy_A Poly(RC)-binding protei 64.2 1.6 5.4E-05 29.5 0.3 30 44-73 5-34 (73)
22 2hh2_A KH-type splicing regula 63.3 4.2 0.00014 29.5 2.5 28 45-72 8-35 (107)
23 1wvn_A Poly(RC)-binding protei 60.9 2.7 9.2E-05 28.8 1.0 29 46-74 8-36 (82)
24 1x4m_A FAR upstream element bi 59.5 2.3 7.7E-05 30.1 0.4 32 46-77 17-48 (94)
25 2p2r_A Poly(RC)-binding protei 58.6 2.3 7.8E-05 28.7 0.3 28 46-73 7-34 (76)
26 1vig_A Vigilin; RNA-binding pr 58.2 2.8 9.7E-05 28.0 0.7 29 46-74 7-35 (71)
27 1ec6_A RNA-binding protein NOV 56.0 2.9 0.0001 28.9 0.5 30 45-74 4-33 (87)
28 1x4n_A FAR upstream element bi 55.9 2.8 9.7E-05 29.4 0.4 29 44-72 15-43 (92)
29 3krm_A Insulin-like growth fac 55.8 3.5 0.00012 31.4 0.9 35 43-77 2-36 (163)
30 2asb_A Transcription elongatio 54.0 26 0.00089 29.5 6.1 62 19-86 83-153 (251)
31 1j5k_A Heterogeneous nuclear r 52.5 3.2 0.00011 28.9 0.2 28 46-73 16-43 (89)
32 2dgr_A Ring finger and KH doma 50.3 2.9 0.0001 29.1 -0.3 26 49-74 15-40 (83)
33 2hh3_A KH-type splicing regula 50.0 5.3 0.00018 29.0 1.1 32 43-74 10-41 (106)
34 2cxc_A NUSA; transcription ter 49.6 42 0.0014 25.8 6.2 58 21-78 78-137 (144)
35 2ctl_A Vigilin; K homology typ 48.8 5.6 0.00019 28.3 1.0 36 45-80 18-53 (97)
36 2cte_A Vigilin; K homology typ 47.7 4.4 0.00015 28.6 0.3 35 46-80 19-53 (94)
37 2ctk_A Vigilin; K homology typ 46.2 3.2 0.00011 30.1 -0.7 32 43-74 16-47 (104)
38 1k0r_A NUSA; two component arr 41.1 50 0.0017 29.3 6.1 61 20-86 207-276 (366)
39 2ctm_A Vigilin; K homology typ 39.8 7.7 0.00026 27.5 0.5 33 45-77 18-50 (95)
40 2jzx_A Poly(RC)-binding protei 39.0 5.8 0.0002 30.0 -0.3 31 45-75 6-36 (160)
41 3elg_A Uncharacterized peripla 38.8 43 0.0015 24.7 4.6 33 17-49 13-48 (128)
42 3af5_A Putative uncharacterize 38.6 19 0.00064 33.8 3.1 54 19-77 16-70 (651)
43 2ycb_A Beta-CAsp RNAse, cleava 38.5 28 0.00095 32.4 4.3 74 20-106 75-149 (636)
44 2ycb_A Beta-CAsp RNAse, cleava 38.1 19 0.00065 33.6 3.1 54 19-77 7-61 (636)
45 3af5_A Putative uncharacterize 37.3 33 0.0011 32.1 4.6 49 21-71 85-134 (651)
46 2anr_A Neuro-oncological ventr 37.1 8.3 0.00028 29.7 0.4 31 45-75 7-37 (178)
47 2xr1_A Cleavage and polyadenyl 37.0 30 0.001 32.3 4.2 50 20-71 79-129 (640)
48 2jvf_A De novo protein M7; tet 37.0 1E+02 0.0035 21.3 6.2 41 37-87 10-53 (96)
49 2jvz_A KH type-splicing, FAR u 34.5 10 0.00034 28.6 0.5 28 47-74 5-32 (164)
50 2anr_A Neuro-oncological ventr 32.0 10 0.00036 29.1 0.2 28 45-72 105-132 (178)
51 2xr1_A Cleavage and polyadenyl 31.9 18 0.00061 33.9 1.8 54 19-77 11-65 (640)
52 2jzx_A Poly(RC)-binding protei 31.0 11 0.00037 28.4 0.1 32 44-75 89-120 (160)
53 3krm_A Insulin-like growth fac 30.8 16 0.00054 27.6 1.0 30 46-75 87-116 (163)
54 1j4w_A FUSE binding protein; s 30.6 15 0.00051 28.2 0.9 29 45-73 105-133 (174)
55 1j4w_A FUSE binding protein; s 30.5 11 0.00039 28.8 0.2 30 45-74 4-33 (174)
56 1wju_A NEDD8 ultimate buster-1 29.9 78 0.0027 22.7 4.6 52 27-86 8-62 (100)
57 3h90_A Ferrous-iron efflux pum 27.9 1.1E+02 0.0037 25.1 5.9 71 17-89 207-278 (283)
58 2ctf_A Vigilin; K homology typ 25.1 17 0.00058 26.1 0.3 20 53-72 36-55 (102)
59 1hh2_P NUSA, N utilization sub 24.5 1.3E+02 0.0045 26.2 5.9 76 21-106 204-288 (344)
60 2qnd_A FMR1 protein; KH domain 21.9 27 0.00094 26.3 0.9 27 46-72 69-95 (144)
61 3m20_A 4-oxalocrotonate tautom 21.2 62 0.0021 20.3 2.5 31 63-93 16-46 (62)
62 1ib8_A Conserved protein SP14. 20.8 2.9E+02 0.0098 21.1 8.1 76 19-98 12-91 (164)
63 3n89_A Defective in GERM LINE 20.4 12 0.00042 33.3 -1.6 28 53-80 39-68 (376)
No 1
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=100.00 E-value=1.8e-69 Score=460.77 Aligned_cols=190 Identities=69% Similarity=1.077 Sum_probs=186.8
Q ss_pred CcccccccceEeecCcchHHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCC
Q 029201 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80 (197)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~Ir~~l~~~~~~agis~i~I~r~~~~i~I~I~~~~p~~vig~~g~~i~~l~~~l~~~~~~~ 80 (197)
|+.+|+.+++||+|+.++++||+||.++|.++|||+|+|+|+++.++|+||+++||+|||++|+++++|++.|+++|+++
T Consensus 1 ~~~~~~~~~k~vadg~~~~~ire~l~k~l~~agis~IeI~Rt~~~i~I~I~t~rPg~VIGkkG~~I~~L~~~l~k~~~~~ 80 (240)
T 3u5c_D 1 MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLGENGRRINELTLLVQKRFKYA 80 (240)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSSCEEEEEEESCHHHHHTTTTCTHHHHHHHHHHHHTCC
T ss_pred CcccccccceEeecCchHHHHHHHHHHHHHhCCcceEEEEEcCCeEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCeeEEEEEEecCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCCceeEEEEecccCccccceeecccCeeccC
Q 029201 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISS 160 (197)
Q Consensus 81 ~~~i~i~i~~i~~p~~~a~~iA~~ia~~Le~r~~fRr~~k~~i~~~~~~gakGikI~isGRL~G~rAR~e~~~~G~v~~t 160 (197)
+++++|++.+|++|++||+++|++||+|||+|++|||+++++++++|++||+||||+|||||+|++||+|||++|+||||
T Consensus 81 ~~~v~I~i~eV~~p~l~A~lvAe~IA~qLe~rv~FRRA~k~ai~~am~aGakGikI~iSGRL~Ga~ARtE~~~eG~vlhT 160 (240)
T 3u5c_D 81 PGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMESGAKGCEVVVSGKLRAARAKAMKFADGFLIHS 160 (240)
T ss_dssp TTSSEEEEECCSCGGGCHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHTTCSEEEEEEEECSSSSSCEEEEEEEECCCCS
T ss_pred CCeEEEEEEEecCCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCceeEEEEecccCCceeeEEeeecCeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeeEEEEEEecCCeeEEEEEEEEC
Q 029201 161 GQPVNEYIDSAVRHVLLRQVSLIFVMLISV 190 (197)
Q Consensus 161 gq~~~~~Idy~~~~a~Tk~GviGIKVwI~~ 190 (197)
|||++++||||+++|+|+||+||||||||+
T Consensus 161 gqtlra~IDYa~~~a~T~yGviGVKVWI~~ 190 (240)
T 3u5c_D 161 GQPVNDFIDTATRHVLMRQGVLGIKVKIMR 190 (240)
T ss_dssp SHHHHHHEEEEEEEEECSSCEEEEEEEEEC
T ss_pred CChhhheeeEEEEEEEcCCeeEEEEEEEEe
Confidence 999999999999999999999999999999
No 2
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6e-70 Score=461.37 Aligned_cols=192 Identities=89% Similarity=1.249 Sum_probs=179.2
Q ss_pred CcccccccceEeecCcchHHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCC
Q 029201 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80 (197)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~Ir~~l~~~~~~agis~i~I~r~~~~i~I~I~~~~p~~vig~~g~~i~~l~~~l~~~~~~~ 80 (197)
|+.+|+.+++|++|+.++++||+||.++|.++|||+|+|+|+++.++|+||+++||+|||++|+++++|++.|+++|+++
T Consensus 1 ~~~~~~~~rkfv~dg~~~a~Ire~l~k~l~~agis~IeI~R~~~~i~I~I~tarPg~vIGkkG~~I~~L~~~l~k~~~~~ 80 (227)
T 3iz6_B 1 MATQISKKKKFVSDGVFYAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFL 80 (227)
T ss_dssp -----------CHHHHHHHHHHHHHHHHTSSCSSCCEECCEETTEECCEEECTTHHHHHCSSSSHHHHHHHHHHHHHCCC
T ss_pred CccchhhhhhhhhcCeehHHHHHHHHHHHHhCCcceEEEEEcCCcEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCeeEEEEEEecCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCCceeEEEEecccCccccceeecccCeeccC
Q 029201 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISS 160 (197)
Q Consensus 81 ~~~i~i~i~~i~~p~~~a~~iA~~ia~~Le~r~~fRr~~k~~i~~~~~~gakGikI~isGRL~G~rAR~e~~~~G~v~~t 160 (197)
+++++|++.+|++|++||+++|++||+|||+|++||||++++++++|++||+||||+|||||+|++||+|||++|++|||
T Consensus 81 ~~~v~I~i~eV~~p~l~A~lvAe~Ia~qLe~rv~fRrA~k~ai~~~m~aGakGikI~iSGRL~GaiARtE~~~eG~vlhT 160 (227)
T 3iz6_B 81 ENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISS 160 (227)
T ss_dssp SCCCCCEEECCSSSTTSCSHHHHHHHTTTTTCCCHHHHHHHHHHTTTTTCCSEEECCBCSCGGGSSCCCBCCEEECCCSS
T ss_pred CCeEEEEEEEecCCCcCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCceEEEEEecccCCceeeEeeeeCCeeccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeeEEEEEEecCCeeEEEEEEEECCC
Q 029201 161 GQPVNEYIDSAVRHVLLRQVSLIFVMLISVPV 192 (197)
Q Consensus 161 gq~~~~~Idy~~~~a~Tk~GviGIKVwI~~~~ 192 (197)
|||++++||||+++|+|+||+||||||||+|.
T Consensus 161 lqtlra~IDya~~~a~T~yGviGVKVWI~~~~ 192 (227)
T 3iz6_B 161 GQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 192 (227)
T ss_dssp SSCTTSCEEECCCCCBCSSSBCCCCCEEECSC
T ss_pred CChhhheeeEEEEEEEcCCeeEEEEEEEECCC
Confidence 99999999999999999999999999999983
No 3
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.6e-67 Score=450.12 Aligned_cols=192 Identities=84% Similarity=1.195 Sum_probs=188.4
Q ss_pred CcccccccceEeecCcchHHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCC
Q 029201 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80 (197)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~Ir~~l~~~~~~agis~i~I~r~~~~i~I~I~~~~p~~vig~~g~~i~~l~~~l~~~~~~~ 80 (197)
|+.+|+..++|++|+.++.+||+||.++|.++|||+|+|+|+++.++|+||+++||+|||++|+++++|++.|+++|+++
T Consensus 1 ~~~~~~~~rkfv~dgv~~~~IR~~l~k~l~~agis~IeIeRt~~~i~I~I~tarPg~vIGkkG~~I~~L~~~L~k~~~~~ 80 (243)
T 2zkq_c 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFP 80 (243)
T ss_dssp -CBCCCCTTTHHHHHHHHHHHHHHHHHHTCTTTEEEEECBEETTEECCEEEESCHHHHHCGGGHHHHHHHHHHHHHSCTT
T ss_pred CCcchhhhhHHHhcChHHHHHHHHHHHHHHHCCcceEEEEEcCCcEEEEEEeCCCceEEcCCchHHHHHHHHHHHHhCcC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCeeEEEEEEecCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCCceeEEEEecccCccccceeecccCeeccC
Q 029201 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISS 160 (197)
Q Consensus 81 ~~~i~i~i~~i~~p~~~a~~iA~~ia~~Le~r~~fRr~~k~~i~~~~~~gakGikI~isGRL~G~rAR~e~~~~G~v~~t 160 (197)
+++++|++.+|++|++||+++|++||+|||+|++|||+++++++++|++||+||||+|||||+|++||+|||++|+++||
T Consensus 81 ~~~v~I~i~eV~~p~l~A~lvAe~IA~qLe~rv~FRRa~k~ai~~am~aGakGikI~iSGRL~GaiARtE~~~eG~vLhT 160 (243)
T 2zkq_c 81 EGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHS 160 (243)
T ss_dssp TCCCCCEEEECSCGGGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHSSCSEEEEEECSSGGGSSCCCBCCEEESSHHH
T ss_pred CceEEEEEEEecCcccCHHHHHHHHHHHHHcchhHHHHHHHHHHHHHhcCCceEEEEEecchhhHhhhhhhhcCcEEeec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeeEEEEEEecCCeeEEEEEEEECCC
Q 029201 161 GQPVNEYIDSAVRHVLLRQVSLIFVMLISVPV 192 (197)
Q Consensus 161 gq~~~~~Idy~~~~a~Tk~GviGIKVwI~~~~ 192 (197)
|++++++||||+++|+|+||+||||||||+|+
T Consensus 161 g~plra~IDYa~~~a~T~yGvlGVKVWI~~~~ 192 (243)
T 2zkq_c 161 GDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPW 192 (243)
T ss_dssp HSSTTCCEEEEEECCCCSSCCCCEEEEEECCC
T ss_pred CchhhhceeEEEEEEEcCCceEEEEEEEecCC
Confidence 99999999999999999999999999999984
No 4
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=100.00 E-value=4.6e-65 Score=435.21 Aligned_cols=191 Identities=49% Similarity=0.852 Sum_probs=186.6
Q ss_pred ccccccceEeecCcchHHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCC
Q 029201 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPEN 82 (197)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~Ir~~l~~~~~~agis~i~I~r~~~~i~I~I~~~~p~~vig~~g~~i~~l~~~l~~~~~~~~~ 82 (197)
.+|+..++|++++.++.+||+||.++|.++|||+|+|+|+++.++|+||+++||+|||++|+++++|++.|+++|+++++
T Consensus 6 ~~~~~~kkfv~~~l~ed~Ir~~l~~~l~~agis~IeI~r~~~~i~I~I~tarPg~vIGkkG~~I~~L~~~L~k~~~~~~~ 85 (243)
T 2xzm_C 6 RAINKKKKFVADGVFNAELHSFFSKSLQDAGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGKKHKELTQFLQKRFGYSDD 85 (243)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCEEEECCEECSSCEEEEEEESCHHHHHCSSSHHHHHHHHHHHHHHCCTTT
T ss_pred hhhhhHHHHHHhHhHHHHHHHHHHHHHHHCCcceEEEEECCCeEEEEEEcCCCceEECCCchHHHHHHHHHHHHhCcCCc
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred eeEEEEEEecCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCCceeEEEEecccCccccceeecccCeeccCCc
Q 029201 83 SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQ 162 (197)
Q Consensus 83 ~i~i~i~~i~~p~~~a~~iA~~ia~~Le~r~~fRr~~k~~i~~~~~~gakGikI~isGRL~G~rAR~e~~~~G~v~~tgq 162 (197)
+++|++++|++|++||+++|++||+|||+|++||||++++++++|++||+||||+|||||+|++||+|||++|+++|||+
T Consensus 86 ~v~I~i~eV~~p~l~A~lvAe~IA~qLe~Rv~FRRA~k~ai~~am~aGakGIkI~iSGRL~GaiARtE~~~eG~vL~T~r 165 (243)
T 2xzm_C 86 QIQIWAEPIKFKGLCASAQVEAMNYKLLKDVPVRLAANYIIKSVIQDGAKGCEIIISGKLKQQRAKTMKFKQGYMICTGQ 165 (243)
T ss_dssp TSEEEEEECSCGGGCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCSEEEEEEEECTTSSSCEEEEEEEECCCCSSS
T ss_pred eEEEEEEEecCcccCHHHHHHHHHHHHHccchHHHHHHHHHHHHHhcCCceEEEEEeCCccchhheeeeeeCCeEeecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeEEEEEEecCCeeEEEEEEEECCCc
Q 029201 163 PVNEYIDSAVRHVLLRQVSLIFVMLISVPVI 193 (197)
Q Consensus 163 ~~~~~Idy~~~~a~Tk~GviGIKVwI~~~~~ 193 (197)
|++++||||+++|+|+||+||||||||+|+.
T Consensus 166 plra~IDYa~~~a~T~yGvlGVKVWI~~~~~ 196 (243)
T 2xzm_C 166 PKNDYIDVAVRHVFFKQGIMGVKVKIMLPYE 196 (243)
T ss_dssp HHHHSEEEEEEEEECSSSEEEEEEEEECCCC
T ss_pred chhhheEEEEEEEEcCCceEEEEEEEecCCC
Confidence 9999999999999999999999999999853
No 5
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=9.7e-64 Score=419.51 Aligned_cols=187 Identities=35% Similarity=0.539 Sum_probs=176.5
Q ss_pred ccccceEeecCcchHHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCee
Q 029201 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSV 84 (197)
Q Consensus 5 ~~~~~~~~~~~~~~~~Ir~~l~~~~~~agis~i~I~r~~~~i~I~I~~~~p~~vig~~g~~i~~l~~~l~~~~~~~~~~i 84 (197)
|+.+++|++++.++.+||+||.++|.++|||+|+|+|+++.++|+||+++||+|||++|+++++|++.|+++|++ +++
T Consensus 1 m~~~k~fv~~~~~d~~Ir~~l~k~l~~agis~ieI~r~~~~~~I~I~t~rPg~vIG~~G~~I~~L~~~l~k~~~~--~~v 78 (210)
T 3j20_C 1 MAIERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGL--ENP 78 (210)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCSSCCEEEEEESCHHHHHCSSSHHHHHHHHHHHHHSSC--SSC
T ss_pred CcchHHHHHhhhHHHHHHHHHHHHHHHCCcceEEEEECCCeEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCC--Cce
Confidence 567899999999999999999999999999999999999999999999999999999999999999999999986 447
Q ss_pred EEEEEEecCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCCceeEEEEecccCccccceeecccCeeccCCccc
Q 029201 85 ELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV 164 (197)
Q Consensus 85 ~i~i~~i~~p~~~a~~iA~~ia~~Le~r~~fRr~~k~~i~~~~~~gakGikI~isGRL~G~rAR~e~~~~G~v~~tgq~~ 164 (197)
.|++.+|++|++||+++|++||+|||+|++||||++++++++|++||+||||+|||||+|.+||+|||++|++| +||+
T Consensus 79 ~I~i~eV~~p~l~A~lvAe~Ia~qLe~rv~fRra~k~ai~~~m~~GakGikI~iSGRL~GeiARtE~~~eG~vp--l~tl 156 (210)
T 3j20_C 79 QIEVEEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGARGVEIRLSGKLTGERAKSIRFYQGYLA--KVGN 156 (210)
T ss_dssp EEEEEECSCTTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSEEEEEEEECTTTTSCEEEEEEEECCC--CSSS
T ss_pred EEEEEEecCCccCHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhcCCceEEEEEecccCcceeeEEeeecceee--ccCC
Confidence 77889999999999999999999999999999999999999999999999999999999978999999999997 5557
Q ss_pred cc--eeeEEEEEEecCCeeEEEEEEEECCCccC
Q 029201 165 NE--YIDSAVRHVLLRQVSLIFVMLISVPVIVL 195 (197)
Q Consensus 165 ~~--~Idy~~~~a~Tk~GviGIKVwI~~~~~~l 195 (197)
++ +||||+++|+|+||+||||||||+|+.+|
T Consensus 157 ~a~~~IDya~~~a~T~yGviGVKVwI~~~e~~l 189 (210)
T 3j20_C 157 PAETLVSKGYAQALLKLGVIGVKVAIMPPGARL 189 (210)
T ss_dssp HHHHHSEEEEEEEECSSCEEEEEEEEECCC---
T ss_pred cchhcEEEEEEEEEcCCcEEEEEEEEECCCCCC
Confidence 77 89999999999999999999999998765
No 6
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=100.00 E-value=1.6e-63 Score=417.50 Aligned_cols=183 Identities=23% Similarity=0.267 Sum_probs=175.6
Q ss_pred cccceEeecCcchHH-------HHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhC
Q 029201 6 SKKRKFVADGVFFAE-------LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78 (197)
Q Consensus 6 ~~~~~~~~~~~~~~~-------Ir~~l~~~~~~agis~i~I~r~~~~i~I~I~~~~p~~vig~~g~~i~~l~~~l~~~~~ 78 (197)
+|+|+|||++++|++ ||+||.++|.++|||+|+|+|+++.++|+||+++|++|||++|+++++|++.|+++|+
T Consensus 16 ~w~S~W~a~~k~y~~~l~eD~~Ir~~l~k~l~~agis~ieI~r~~~~i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~ 95 (206)
T 3r8n_C 16 PWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAG 95 (206)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHHHHHHHHHSTTTTEEEEECCCCSSSBCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHS
T ss_pred CceeEEcCCcchhHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCeEEEEEEECCCCccccCcchHHHHHHHHHHHHHC
Confidence 589999999999986 9999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCeeEEEEEEecCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCCceeEEEEecccCcc-ccceeecccCee
Q 029201 79 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQ-RAKSMKFKDGYM 157 (197)
Q Consensus 79 ~~~~~i~i~i~~i~~p~~~a~~iA~~ia~~Le~r~~fRr~~k~~i~~~~~~gakGikI~isGRL~G~-rAR~e~~~~G~v 157 (197)
. ++.|++.+|++|++||+++|++||+|||+|++|||||+++++++|++||+||||+|||||+|+ +||+|||++|+|
T Consensus 96 ~---~v~I~i~ev~~p~l~A~lvAe~Ia~qLe~rv~fRra~k~ai~~~m~~gakGikI~iSGRL~Gae~AR~e~~~eG~v 172 (206)
T 3r8n_C 96 V---PAQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRV 172 (206)
T ss_dssp S---CBCCBCCBCSCGGGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTCCSEEEEECCSSSTTCSSCCCCCCEESCC
T ss_pred C---ceEEEEEecCCCCcCHHHHHHHHHHHHHccccHHHHHHHHHHHHhhcCCCceEEEEccccCCCcceeEEEEeccee
Confidence 4 488889999999999999999999999999999999999999999999999999999999999 599999999999
Q ss_pred ccCCccccceeeEEEEEEecCCeeEEEEEEEECCCc
Q 029201 158 ISSGQPVNEYIDSAVRHVLLRQVSLIFVMLISVPVI 193 (197)
Q Consensus 158 ~~tgq~~~~~Idy~~~~a~Tk~GviGIKVwI~~~~~ 193 (197)
| +||++++||||+++|.|+||+||||||||++++
T Consensus 173 p--l~tlra~IDy~~~~a~T~yGviGVKVwI~~ge~ 206 (206)
T 3r8n_C 173 P--LHTLRADIDYNTSEAHTTYGVIGVKVWIFKGEI 206 (206)
T ss_dssp C--TTCSSSCEEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred e--ccccccccEEEEEEEEcCCeeEEEEEEEEcCCC
Confidence 6 666999999999999999999999999999874
No 7
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=100.00 E-value=1.1e-62 Score=418.60 Aligned_cols=183 Identities=23% Similarity=0.267 Sum_probs=176.0
Q ss_pred cccceEeecCcchHH-------HHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhC
Q 029201 6 SKKRKFVADGVFFAE-------LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78 (197)
Q Consensus 6 ~~~~~~~~~~~~~~~-------Ir~~l~~~~~~agis~i~I~r~~~~i~I~I~~~~p~~vig~~g~~i~~l~~~l~~~~~ 78 (197)
.|+|+|||++++|++ ||+||.++|.++|||+|+|+|+++.++|+||+++|++|||++|+++++|++.|+++|+
T Consensus 17 ~w~S~W~a~~k~y~~~l~eD~kIr~~l~k~l~~agis~IeI~R~~~~i~I~I~t~rPg~vIGkkG~~I~~L~~~L~k~~~ 96 (233)
T 3i1m_C 17 PWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAG 96 (233)
T ss_dssp CCSBCCCCCHHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEBCCCSSCBCCEEEESCHHHHHCSTTHHHHHHHHHHHHHHT
T ss_pred CceeEEecCcchhHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCeEEEEEEECCCCccccCcchHHHHHHHHHHHHHC
Confidence 589999999999986 9999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCeeEEEEEEecCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCCceeEEEEecccCcc-ccceeecccCee
Q 029201 79 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQ-RAKSMKFKDGYM 157 (197)
Q Consensus 79 ~~~~~i~i~i~~i~~p~~~a~~iA~~ia~~Le~r~~fRr~~k~~i~~~~~~gakGikI~isGRL~G~-rAR~e~~~~G~v 157 (197)
. ++.|++.+|++|++||+++|++||+|||+|++||||++++++++|++||+||||+|||||+|+ +||+|||++|+|
T Consensus 97 ~---~v~I~i~eV~~p~l~A~lvAe~IA~qLe~rv~FRramk~ai~~am~aGakGikI~iSGRL~GaeiARtE~~~eG~v 173 (233)
T 3i1m_C 97 V---PAQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRV 173 (233)
T ss_dssp S---CBCCEEEECSSGGGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTCCSEEEEEEESSTTSCSSCCCCBCCEECC
T ss_pred C---ceEEEEEeecCCCcCHHHHHHHHHHHHHccccHHHHHHHHHHhhhhcCCceEEEEEccccCCCcceeEEEEecCee
Confidence 4 488889999999999999999999999999999999999999999999999999999999999 599999999999
Q ss_pred ccCCccccceeeEEEEEEecCCeeEEEEEEEECCCc
Q 029201 158 ISSGQPVNEYIDSAVRHVLLRQVSLIFVMLISVPVI 193 (197)
Q Consensus 158 ~~tgq~~~~~Idy~~~~a~Tk~GviGIKVwI~~~~~ 193 (197)
| +||++++||||+++|.|+||+||||||||++++
T Consensus 174 P--L~Tlra~IDY~~~~a~T~yGviGVKVWI~~ge~ 207 (233)
T 3i1m_C 174 P--LHTLRADIDYNTSEAHTTYGVIGVKVWIFKGEI 207 (233)
T ss_dssp C--TTCSSSEEEEEEECCEETTEECEEEEEEEEECC
T ss_pred e--ccccccccEEEEEEEEcCCeeEEEEEEEECCCc
Confidence 6 556999999999999999999999999999876
No 8
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.2e-62 Score=415.53 Aligned_cols=186 Identities=15% Similarity=0.173 Sum_probs=178.5
Q ss_pred cccceEeecCcchHH-------HHHHHHhhhcc-----C---CeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHH
Q 029201 6 SKKRKFVADGVFFAE-------LNEVLTRELAE-----D---GYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELT 70 (197)
Q Consensus 6 ~~~~~~~~~~~~~~~-------Ir~~l~~~~~~-----a---gis~i~I~r~~~~i~I~I~~~~p~~vig~~g~~i~~l~ 70 (197)
.|+|+||+++++|++ ||+||.++|.+ | |||+|+|+|+++.++|+||+++|+++||++|+++++|+
T Consensus 17 ~w~S~W~a~~k~y~~~l~eD~~IR~~i~~~l~~~~~~~a~~~gis~ieI~r~~~~i~I~I~~~rPg~vIGk~g~~i~~L~ 96 (218)
T 3bbn_C 17 SHYSLWFSQPKNYAEGLQEDQKIRDCIKNYVQKNTKTSSGVEGIARIEIQKRIDLIQVIIHMGFPKLLIENRPQGVEDLK 96 (218)
T ss_dssp CCSBCCCCCTTSSHHHHHHHHHHHHHHHSCCSSSSCCTTTTTCEEEEEBCBSSSCBCCEEEESCTTTTSCSSSCTTHHHH
T ss_pred CcceEEeCChhHHHHHHHHHHHHHHHHHHHHhhhcccccccCccceEEEEEcCCeEEEEEEecCCCcEecCCcHHHHHHH
Confidence 489999999889986 99999999997 8 99999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCeeEEEEEEecCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCCceeEEEEecccCcc-ccce
Q 029201 71 SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQ-RAKS 149 (197)
Q Consensus 71 ~~l~~~~~~~~~~i~i~i~~i~~p~~~a~~iA~~ia~~Le~r~~fRr~~k~~i~~~~~~gakGikI~isGRL~G~-rAR~ 149 (197)
+.|++.|++.++++.|+++++++|++||+++|++||+|||+|++|||+++++++++|++||+||||+|||||+|+ +||+
T Consensus 97 ~~l~k~~~~~~~~v~i~i~ev~~p~l~A~lvAe~Ia~qLe~r~~fRra~k~ai~~~m~~gakGikI~iSGRL~Gae~AR~ 176 (218)
T 3bbn_C 97 INVQKELNCVNRKLNIAITRIAKPYGDPNILAEFIAGQLKSRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARI 176 (218)
T ss_dssp HHHHHHSCSSCCCCCCCEEECSCTTTSHHHHHHHSTTTTTTTCCHHHHHTHHHHHHHTTCCSEEEEECCSCCTTCSSCCC
T ss_pred HHHHHHhccCCceEEEEEEEecCCCcCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhCCCeEEEEEccCcchhhheeE
Confidence 999999987678899999999999999999999999999999999999999999999999999999999999998 6999
Q ss_pred eecccCeeccCCccccceeeEEEEEEecCCeeEEEEEEEECCCc
Q 029201 150 MKFKDGYMISSGQPVNEYIDSAVRHVLLRQVSLIFVMLISVPVI 193 (197)
Q Consensus 150 e~~~~G~v~~tgq~~~~~Idy~~~~a~Tk~GviGIKVwI~~~~~ 193 (197)
|||++|+|| +||++++||||+++|+|+||+||||||||+|++
T Consensus 177 e~~~eG~vp--l~tlra~IDy~~~~a~T~yGviGVKVWI~~~e~ 218 (218)
T 3bbn_C 177 EWIREGRVP--LQTIRAKIDYCAYTVRTIYGVLGIKIWIFMGEE 218 (218)
T ss_dssp CEEEEECCC--SSCSTTCCBCCEEECCCSSCCCEEEEEEECCC-
T ss_pred EeEeccccc--CCccccceEEEEEEEEcCCeeEEEEEEEecCCC
Confidence 999999997 677999999999999999999999999999974
No 9
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=100.00 E-value=1.3e-61 Score=413.56 Aligned_cols=183 Identities=24% Similarity=0.301 Sum_probs=175.9
Q ss_pred cccceEeecCcchHH-------HHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhC
Q 029201 6 SKKRKFVADGVFFAE-------LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78 (197)
Q Consensus 6 ~~~~~~~~~~~~~~~-------Ir~~l~~~~~~agis~i~I~r~~~~i~I~I~~~~p~~vig~~g~~i~~l~~~l~~~~~ 78 (197)
.|+|+||+++++|++ ||+||.++|.++|||+|+|+|+++.++|+||+++||+|||++|+++++|++.|+++|+
T Consensus 17 ~w~S~W~a~~k~y~~~l~eD~~IR~~l~k~l~~agis~IeIeR~~~~i~I~I~tarPg~vIGkkG~~I~~L~~~L~k~~~ 96 (239)
T 2vqe_C 17 DWESRWYAGKKQYRHLLLEDQRIRGLLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLREELAKLTG 96 (239)
T ss_dssp CCSBCCCCCTTTHHHHHHHHHHHHHHHHTTTTTTCEEEECBCBSSSCBCCEEEESCGGGTSCSSSSHHHHHHHHHHHHST
T ss_pred CcceEEeCCHhHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEECCCeEEEEEEeCCCcceecCCchHHHHHHHHHHHHhC
Confidence 489999999889986 9999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCCeeEEEEEEecCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCCceeEEEEecccCcc-ccceeecccCee
Q 029201 79 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQ-RAKSMKFKDGYM 157 (197)
Q Consensus 79 ~~~~~i~i~i~~i~~p~~~a~~iA~~ia~~Le~r~~fRr~~k~~i~~~~~~gakGikI~isGRL~G~-rAR~e~~~~G~v 157 (197)
.++.|++.+|++|++||+++|++||+|||+|++|||+++++++++|++||+||||+|||||+|+ +||+|||++|+|
T Consensus 97 ---~~v~I~i~eVk~p~l~A~lvAe~Ia~qLe~rv~FRra~k~ai~~am~~gakGIkI~iSGRL~GaeiARtE~~~eG~v 173 (239)
T 2vqe_C 97 ---KNVALNVQEVQNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGAEQARTEWAAQGRV 173 (239)
T ss_dssp ---TCCCCEEEECSCTTSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSSCSEEEEEECSCTTTCSSCCCBCCEEECC
T ss_pred ---CeeEEEEEEecCCCcCHHHHHHHHHHHHHccchHHHHHHHHHHHHHHcCCCceEEEEcCCcchhhhhhhhhhhcCcc
Confidence 5688889999999999999999999999999999999999999999999999999999999999 599999999999
Q ss_pred ccCCccccceeeEEEEEEecCCeeEEEEEEEECCCc
Q 029201 158 ISSGQPVNEYIDSAVRHVLLRQVSLIFVMLISVPVI 193 (197)
Q Consensus 158 ~~tgq~~~~~Idy~~~~a~Tk~GviGIKVwI~~~~~ 193 (197)
| +||++++||||+++|+|+||+||||||||++++
T Consensus 174 p--L~Tlra~IDYa~~~a~T~yGviGVKVWI~~ge~ 207 (239)
T 2vqe_C 174 P--LHTLRANIDYGFALARTTYGVLGVKAYIFLGEV 207 (239)
T ss_dssp C--TTCGGGCEEEEEECCBCSSCBCCEEEEEECCCC
T ss_pred c--cCCccceeEEEEEEEEcCCeeEEEEEEEEcCCc
Confidence 5 555999999999999999999999999999975
No 10
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=99.91 E-value=7.5e-25 Score=162.29 Aligned_cols=87 Identities=80% Similarity=1.064 Sum_probs=84.7
Q ss_pred ecCcchHHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeeEEEEEEec
Q 029201 13 ADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVN 92 (197)
Q Consensus 13 ~~~~~~~~Ir~~l~~~~~~agis~i~I~r~~~~i~I~I~~~~p~~vig~~g~~i~~l~~~l~~~~~~~~~~i~i~i~~i~ 92 (197)
+|+.++++||+||.++|.+||||+|+|+|+++.++|+||+++||+|||++|+++++|+..|+++|++.+++++|++.||+
T Consensus 4 ~~gv~~~~IR~~i~k~l~~aGis~IeIeR~~~~i~I~I~tarPg~vIGkkG~~Ie~L~~~l~k~~~~~~~~v~I~I~eV~ 83 (92)
T 1wh9_A 4 GSSGFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVA 83 (92)
T ss_dssp SSCSHHHHHHHHHHHHTTTTTEEEEEEEECSSCEEEEEEESCHHHHHCGGGHHHHHHHHHHHHHHCCCTTSEEEEEEECC
T ss_pred hhhhHHHHHHHHHHHHHHHCceeeEEEEECCCeEEEEEEeCCCceEEcCCcHHHHHHHHHHHHHhCCCCCeEEEEEEEec
Confidence 68999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred CCCcCHH
Q 029201 93 NRGLCAI 99 (197)
Q Consensus 93 ~p~~~a~ 99 (197)
+|++||+
T Consensus 84 ~P~ldA~ 90 (92)
T 1wh9_A 84 TRGSGPS 90 (92)
T ss_dssp CSCCCSC
T ss_pred CCCcCCC
Confidence 9999985
No 11
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=96.06 E-value=0.01 Score=47.04 Aligned_cols=109 Identities=21% Similarity=0.182 Sum_probs=75.7
Q ss_pred hHHHHHHHHhhhccCCee--eeEE-EEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCC-CCeeEEEEEEe-c
Q 029201 18 FAELNEVLTRELAEDGYS--GVEV-RVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP-ENSVELYAEKV-N 92 (197)
Q Consensus 18 ~~~Ir~~l~~~~~~agis--~i~I-~r~~~~i~I~I~~~~p~~vig~~g~~i~~l~~~l~~~~~~~-~~~i~i~i~~i-~ 92 (197)
..++.+||.+.|...|+. .+++ ....+.+.+.|.....|++||+.|+.++.|+..+....+-. +..|.|.+... +
T Consensus 4 ~~~~~~~L~~il~~m~~~~~~i~v~~~~~~~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~vn~~~~~~V~LDve~YRe 83 (152)
T 2pt7_G 4 LHEIKQELKDLFSHLPYKINKVEVSLYEPGVLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIHPTYGYSIRLEISTFLQ 83 (152)
T ss_dssp HHHHHHHHHHHTTTTTCCEEEEEEEEEETTEEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHHHHHHSCEEEEEETTHHH
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEEEecCCEEEEEEecCCcceEECCCCcchHHHHHHHHHHhhhcCCceEEEEhHHhHH
Confidence 356899999999999985 4666 35677899999999999999999999999999988766421 23455443222 1
Q ss_pred CCCcCHHHHHHHHHHHHhcC-c----h-hHHHHHHHHHHH
Q 029201 93 NRGLCAIAQAESLRYKLLGG-L----A-VRRACYGVLRFI 126 (197)
Q Consensus 93 ~p~~~a~~iA~~ia~~Le~r-~----~-fRr~~k~~i~~~ 126 (197)
+-+-.=.-+|..+|.+..+. . | =||+++.+|+.-
T Consensus 84 rReetL~~lA~~~A~kV~~tgk~v~~p~erriIH~aLq~~ 123 (152)
T 2pt7_G 84 NQEKVMDTQLQSVIMTVHEVGKGQMKAPDGVLTYIALKKL 123 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCEEEECCSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCcCCCCCchHHHHHHHHhC
Confidence 12233345677777776542 2 1 367777777754
No 12
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=90.58 E-value=0.51 Score=39.44 Aligned_cols=105 Identities=13% Similarity=0.179 Sum_probs=69.7
Q ss_pred HHHHHHHHhhhccCCee-eeEEEEc--CCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCC-CCeeEEEEEEecCC
Q 029201 19 AELNEVLTRELAEDGYS-GVEVRVT--PVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP-ENSVELYAEKVNNR 94 (197)
Q Consensus 19 ~~Ir~~l~~~~~~agis-~i~I~r~--~~~i~I~I~~~~p~~vig~~g~~i~~l~~~l~~~~~~~-~~~i~i~i~~i~~p 94 (197)
....+||...|...|+. .|++.-. .+.+.|.|....++.+||++|+.++.|+..+....+-. ...+.|. .++.+.
T Consensus 64 ~~a~~~L~~ll~~m~~~~~i~~~~~~~~~~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn~~~~~~~rv~-LDi~~Y 142 (225)
T 3gku_A 64 DKAIEFLEQVFDAMNMAVDISVEYNETEKEMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVNKSSSDYIRVK-LDTENY 142 (225)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEEEETTTTEEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHHHTCSSCCEEE-EESTTH
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEEecCCCEEEEEEcCCccceeecCCCeEhHHHHHHHHHHHHhcCCCceEEE-EecchH
Confidence 34789999999988875 3445332 37888999888899999999999999999988877422 2223331 234332
Q ss_pred ----CcCHHHHHHHHHHHHhc-Cc--------h-hHHHHHHHHH
Q 029201 95 ----GLCAIAQAESLRYKLLG-GL--------A-VRRACYGVLR 124 (197)
Q Consensus 95 ----~~~a~~iA~~ia~~Le~-r~--------~-fRr~~k~~i~ 124 (197)
.-.=.-+|..+|.+..+ +. | =||+++.+|+
T Consensus 143 R~rR~e~L~~lA~~~A~kV~~tg~~v~L~PM~~~ERriIH~al~ 186 (225)
T 3gku_A 143 RERRKETLETLAKNIAYKVKRTKRSVSLEPMNPYERRIIHAALQ 186 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCEECCCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCEEEccCCCHHHHHHHHHHHc
Confidence 22233467777777654 22 2 3777777764
No 13
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=73.65 E-value=4.6 Score=33.96 Aligned_cols=48 Identities=23% Similarity=0.323 Sum_probs=35.4
Q ss_pred CeEEEEEEecccc---eeeccCcccHHHH----HHHHHHHhCCCCCeeEEEEEEecC
Q 029201 44 VRTEIIIRATRTQ---NVLGEKGRRIREL----TSVVQKRFKFPENSVELYAEKVNN 93 (197)
Q Consensus 44 ~~i~I~I~~~~p~---~vig~~g~~i~~l----~~~l~~~~~~~~~~i~i~i~~i~~ 93 (197)
..+.-+||+.+++ ++||++|+.|+++ +..|+++|+. +-.+++.| +|+.
T Consensus 238 ~~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~-~v~l~l~v-kv~~ 292 (308)
T 3iev_A 238 LVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGR-PVYLELWV-KVVP 292 (308)
T ss_dssp EEEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTS-CEEEEEEE-EECT
T ss_pred EEEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCC-ceEEEEEE-EECC
Confidence 3678899999987 5999999999877 7789999972 23345544 3443
No 14
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=73.51 E-value=8.2 Score=32.34 Aligned_cols=35 Identities=26% Similarity=0.424 Sum_probs=29.4
Q ss_pred CeEEEEEEecccc---eeeccCcccHHHH----HHHHHHHhC
Q 029201 44 VRTEIIIRATRTQ---NVLGEKGRRIREL----TSVVQKRFK 78 (197)
Q Consensus 44 ~~i~I~I~~~~p~---~vig~~g~~i~~l----~~~l~~~~~ 78 (197)
..+..+|++.+++ ++||++|+.++++ +..|+++|+
T Consensus 229 ~~i~~~i~v~~~~~k~i~ig~~G~~~k~ig~~ar~~i~~~~~ 270 (301)
T 1ega_A 229 YDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFE 270 (301)
T ss_dssp EEEEEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEEEEEEECCceEEEECCCcHHHHHHHHHHHHHHHHHHC
Confidence 4577889998776 5999999999887 678899997
No 15
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=72.69 E-value=3.2 Score=32.22 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=44.2
Q ss_pred HHHHHH--HhhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeeEE
Q 029201 20 ELNEVL--TRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVEL 86 (197)
Q Consensus 20 ~Ir~~l--~~~~~~agis~i~I~r~~~~i~I~I~~~~p~~vig~~g~~i~~l~~~l~~~~~~~~~~i~i 86 (197)
+-..|+ ...+.++.+-++.+.-..+.+.+.+.....|..+|.+|++++.+.+.| | .+|++
T Consensus 10 ~~~r~i~lfe~~t~a~~~dcvid~~~dr~i~vVk~g~vGa~IG~~G~ri~~i~~el----g---ekIdI 71 (144)
T 2cxc_A 10 EELRYISVFHSITGVTAYRCIVDEENNRLIFLVSEGEAGRAIGRGGRLIKLLREAL----G---KNIEV 71 (144)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEEGGGTEEEEEECTTCHHHHHCGGGHHHHHHHHHH----S---SEEEE
T ss_pred HHHHHHHHHHHHhCCCeeeEEEeCCCCEEEEEEeCCCccccCccCchHHHHHHHHh----C---CeeEE
Confidence 334454 345667888888776556888888877777899999999999988777 4 56664
No 16
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=68.27 E-value=5.8 Score=33.46 Aligned_cols=42 Identities=26% Similarity=0.461 Sum_probs=32.6
Q ss_pred CeEEEEEEecccc---eeeccCcccHHHH----HHHHHHHhCCCCCee--EEEE
Q 029201 44 VRTEIIIRATRTQ---NVLGEKGRRIREL----TSVVQKRFKFPENSV--ELYA 88 (197)
Q Consensus 44 ~~i~I~I~~~~p~---~vig~~g~~i~~l----~~~l~~~~~~~~~~i--~i~i 88 (197)
..+..+|++.+++ ++||++|+.|+++ +..|+++|+ .+| ++.|
T Consensus 228 ~~i~~~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~---~~v~l~l~v 278 (301)
T 1wf3_A 228 LYIKAILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLG---KKVYLDLEV 278 (301)
T ss_dssp EEEEEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT---SEEEEEEEE
T ss_pred EEEEEEEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHC---CceEEEEEE
Confidence 3466689999987 5999999999877 778889997 444 5544
No 17
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=65.89 E-value=3.1 Score=28.53 Aligned_cols=30 Identities=20% Similarity=0.443 Sum_probs=23.1
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHHH
Q 029201 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (197)
Q Consensus 45 ~i~I~I~~~~p~~vig~~g~~i~~l~~~l~ 74 (197)
..++.|-...-+.|||++|+.|++|++.-.
T Consensus 8 ~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tg 37 (82)
T 1zzk_A 8 TTQVTIPKDLAGSIIGKGGQRIKQIRHESG 37 (82)
T ss_dssp EEEEEEETTTGGGGTCGGGHHHHHHHHHHC
T ss_pred EEEEEEChHhcCeeECCCchHHHHHHHHHC
Confidence 345666667778899999999998877643
No 18
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=65.43 E-value=1.6 Score=30.18 Aligned_cols=30 Identities=30% Similarity=0.459 Sum_probs=23.0
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHHH
Q 029201 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (197)
Q Consensus 45 ~i~I~I~~~~p~~vig~~g~~i~~l~~~l~ 74 (197)
...+.|-..+-+.|||++|+.|++|++.-.
T Consensus 15 ~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tg 44 (85)
T 2opv_A 15 VQEIMIPAGKAGLVIGKGGETIKQLQERAG 44 (85)
T ss_dssp EEEEEECTTTHHHHHTTTTHHHHHHHHHHT
T ss_pred EEEEEeChhheeeeECCCCHHHHHHHHHHC
Confidence 345666667778899999999988877644
No 19
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=64.62 E-value=1.8 Score=31.26 Aligned_cols=33 Identities=18% Similarity=0.394 Sum_probs=25.2
Q ss_pred CCeEEEEEEecccceeeccCcccHHHHHHHHHH
Q 029201 43 PVRTEIIIRATRTQNVLGEKGRRIRELTSVVQK 75 (197)
Q Consensus 43 ~~~i~I~I~~~~p~~vig~~g~~i~~l~~~l~~ 75 (197)
|...++.|-..+-+.|||++|+.|++|++.-.-
T Consensus 14 p~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga 46 (104)
T 1we8_A 14 PVFEQLSVPQRSVGRIIGRGGETIRSICKASGA 46 (104)
T ss_dssp EEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCC
T ss_pred CEEEEEEEChhheeeeECCCCHHHHHHHHHHCC
Confidence 344566777788889999999999988776543
No 20
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=64.31 E-value=2.5 Score=28.27 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=21.5
Q ss_pred EEEEEEecccceeeccCcccHHHHHHHH
Q 029201 46 TEIIIRATRTQNVLGEKGRRIRELTSVV 73 (197)
Q Consensus 46 i~I~I~~~~p~~vig~~g~~i~~l~~~l 73 (197)
+++.|-...-|.|||++|+.+++|++.-
T Consensus 5 ~~i~Ip~~~vg~IIGkgG~~Ik~I~~~t 32 (76)
T 1dtj_A 5 VEMAVPENLVGAILGKGGKTLVEYQELT 32 (76)
T ss_dssp EEEEEETTTHHHHHCSTTHHHHHHHHHH
T ss_pred EEEEEChHHcceEECCCchHHHHHHHHh
Confidence 4556666777789999999998877664
No 21
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=64.18 E-value=1.6 Score=29.46 Aligned_cols=30 Identities=10% Similarity=0.463 Sum_probs=23.5
Q ss_pred CeEEEEEEecccceeeccCcccHHHHHHHH
Q 029201 44 VRTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (197)
Q Consensus 44 ~~i~I~I~~~~p~~vig~~g~~i~~l~~~l 73 (197)
..+++.|....-|.|||++|+.|++|++.-
T Consensus 5 ~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~t 34 (73)
T 2axy_A 5 LTIRLLMHGKEVGSIIGKKGESVKKMREES 34 (73)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEEEChhHeeeEECCCCHHHHHHHHHH
Confidence 345666677777889999999999887764
No 22
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=63.34 E-value=4.2 Score=29.45 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=23.6
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHH
Q 029201 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (197)
Q Consensus 45 ~i~I~I~~~~p~~vig~~g~~i~~l~~~ 72 (197)
.+++.|-...-+.|||++|+.|++|++.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~ 35 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQ 35 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHH
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHH
Confidence 4677788888899999999999887765
No 23
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=60.89 E-value=2.7 Score=28.77 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=22.0
Q ss_pred EEEEEEecccceeeccCcccHHHHHHHHH
Q 029201 46 TEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (197)
Q Consensus 46 i~I~I~~~~p~~vig~~g~~i~~l~~~l~ 74 (197)
.++.|-...-|.|||++|+.|++|++.-.
T Consensus 8 ~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sg 36 (82)
T 1wvn_A 8 HELTIPNNLIGCIIGRQGANINEIRQMSG 36 (82)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHHHC
T ss_pred EEEEEchHhccceeCCCchhHHHHHHHhC
Confidence 45556666777899999999988877643
No 24
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=59.46 E-value=2.3 Score=30.10 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=23.6
Q ss_pred EEEEEEecccceeeccCcccHHHHHHHHHHHh
Q 029201 46 TEIIIRATRTQNVLGEKGRRIRELTSVVQKRF 77 (197)
Q Consensus 46 i~I~I~~~~p~~vig~~g~~i~~l~~~l~~~~ 77 (197)
+++.|-..+.+.|||++|+.|++|++.-.-..
T Consensus 17 ~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I 48 (94)
T 1x4m_A 17 QEIMIPASKAGLVIGKGGETIKQLQERAGVKM 48 (94)
T ss_dssp EEEEECHHHHHHHSCSSSSHHHHHHHHHTSEE
T ss_pred EEEEEChhhcceEECCCCHHHHHHHHHHCCeE
Confidence 44555556777899999999999887755433
No 25
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=58.61 E-value=2.3 Score=28.68 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=21.3
Q ss_pred EEEEEEecccceeeccCcccHHHHHHHH
Q 029201 46 TEIIIRATRTQNVLGEKGRRIRELTSVV 73 (197)
Q Consensus 46 i~I~I~~~~p~~vig~~g~~i~~l~~~l 73 (197)
.++.|-...-|.|||++|+.|++|++.-
T Consensus 7 ~~i~Ip~~~vg~iIGkgG~~Ik~I~~~t 34 (76)
T 2p2r_A 7 HELTIPNDLIGCIIGRQGAKINEIRQMS 34 (76)
T ss_dssp EEEEEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEChHHcceEECCCChHHHHHHHHH
Confidence 4555555667789999999998877664
No 26
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=58.20 E-value=2.8 Score=28.03 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=21.9
Q ss_pred EEEEEEecccceeeccCcccHHHHHHHHH
Q 029201 46 TEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (197)
Q Consensus 46 i~I~I~~~~p~~vig~~g~~i~~l~~~l~ 74 (197)
..+.|-..+-+.|||++|+.+++|++.-.
T Consensus 7 ~~i~I~~~~ig~iIG~gG~~I~~I~e~tg 35 (71)
T 1vig_A 7 VEINIDHKFHRHLIGKSGANINRIKDQYK 35 (71)
T ss_dssp EEEEECSSHHHHHTCSSCCHHHHHHHHTC
T ss_pred EEEEECHHHhhhhcCCCCccHHHHHHHHC
Confidence 44555556677899999999998877633
No 27
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=56.03 E-value=2.9 Score=28.90 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=22.7
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHHH
Q 029201 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (197)
Q Consensus 45 ~i~I~I~~~~p~~vig~~g~~i~~l~~~l~ 74 (197)
.+++.|-...-|.|||++|+.|++|++.-.
T Consensus 4 t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tg 33 (87)
T 1ec6_A 4 LVEIAVPENLVGAILGKGGKTLVEYQELTG 33 (87)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHHC
T ss_pred EEEEEEChHHcCeeECCCcHhHHHHHHHhC
Confidence 345666667778899999999988777643
No 28
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=55.85 E-value=2.8 Score=29.45 Aligned_cols=29 Identities=14% Similarity=0.263 Sum_probs=21.9
Q ss_pred CeEEEEEEecccceeeccCcccHHHHHHH
Q 029201 44 VRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (197)
Q Consensus 44 ~~i~I~I~~~~p~~vig~~g~~i~~l~~~ 72 (197)
...++.|-...-+.|||++|+.|++|++.
T Consensus 15 ~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~ 43 (92)
T 1x4n_A 15 MTEEYKVPDGMVGFIIGRGGEQISRIQQE 43 (92)
T ss_dssp EEEEEEEEHHHHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEEChHHcceeECCCchHHHHHHHH
Confidence 34555666667778999999999887665
No 29
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=55.76 E-value=3.5 Score=31.40 Aligned_cols=35 Identities=20% Similarity=0.436 Sum_probs=27.4
Q ss_pred CCeEEEEEEecccceeeccCcccHHHHHHHHHHHh
Q 029201 43 PVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRF 77 (197)
Q Consensus 43 ~~~i~I~I~~~~p~~vig~~g~~i~~l~~~l~~~~ 77 (197)
|..+++.|-...-|.+||++|+.|++|++.-.-..
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I 36 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASI 36 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEE
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeE
Confidence 34567778888889999999999999887765433
No 30
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=54.00 E-value=26 Score=29.53 Aligned_cols=62 Identities=21% Similarity=0.411 Sum_probs=44.9
Q ss_pred HHHHHHHHhhhcc--CCeeeeE-EEEcC-CeEEEEEEecccce-----eeccCcccHHHHHHHHHHHhCCCCCeeEE
Q 029201 19 AELNEVLTRELAE--DGYSGVE-VRVTP-VRTEIIIRATRTQN-----VLGEKGRRIRELTSVVQKRFKFPENSVEL 86 (197)
Q Consensus 19 ~~Ir~~l~~~~~~--agis~i~-I~r~~-~~i~I~I~~~~p~~-----vig~~g~~i~~l~~~l~~~~~~~~~~i~i 86 (197)
..++++|+.+.+. .|.-.|. |-|.| .+++|-+++..|++ -||.+|++++.+.+.|. +.+|+|
T Consensus 83 ~lvk~Lfe~EVPEI~dG~veI~~iaRe~G~R~KiAV~s~d~~iDpvGacIG~~G~rI~~i~~eL~------gekIDI 153 (251)
T 2asb_A 83 NLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELS------GEKIDI 153 (251)
T ss_dssp HHHHHHHHHHCHHHHTTSEEEEEEEEETTTEEEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTT------TCEEEE
T ss_pred HHHHHHHHhcchHhhcCeEEEEEEecCCCceeEEEEEcCCCCCCHHHHHhCCCchHHHHHHHHhC------CCeEEE
Confidence 3478888887775 3433333 66765 89999999988874 78999999888766553 367775
No 31
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=52.48 E-value=3.2 Score=28.94 Aligned_cols=28 Identities=21% Similarity=0.489 Sum_probs=20.8
Q ss_pred EEEEEEecccceeeccCcccHHHHHHHH
Q 029201 46 TEIIIRATRTQNVLGEKGRRIRELTSVV 73 (197)
Q Consensus 46 i~I~I~~~~p~~vig~~g~~i~~l~~~l 73 (197)
.++.|-...-+.|||++|+.|++|++.-
T Consensus 16 ~~i~Ip~~~vg~IIGkgG~~Ik~I~~~t 43 (89)
T 1j5k_A 16 TQVTIPKDLAGSIIGKGGQRIKQIRHES 43 (89)
T ss_dssp EEEEEEHHHHHHHHCGGGHHHHHHHHHT
T ss_pred EEEEEChhhcceeECCCCHhHHHHHHHh
Confidence 3455555666789999999998877653
No 32
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.26 E-value=2.9 Score=29.15 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=19.0
Q ss_pred EEEecccceeeccCcccHHHHHHHHH
Q 029201 49 IIRATRTQNVLGEKGRRIRELTSVVQ 74 (197)
Q Consensus 49 ~I~~~~p~~vig~~g~~i~~l~~~l~ 74 (197)
.|-...-+.|||++|+.|++|++.-.
T Consensus 15 ~VP~~~vG~IIGkgG~tIk~Iqe~Tg 40 (83)
T 2dgr_A 15 RVPYRVVGLVVGPKGATIKRIQQRTH 40 (83)
T ss_dssp ECCHHHHHHHHTTTTSSHHHHHHHTT
T ss_pred EeChHHeeeeECCCchHHHHHHHHhC
Confidence 33334556799999999999887643
No 33
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=49.99 E-value=5.3 Score=29.04 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=24.7
Q ss_pred CCeEEEEEEecccceeeccCcccHHHHHHHHH
Q 029201 43 PVRTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (197)
Q Consensus 43 ~~~i~I~I~~~~p~~vig~~g~~i~~l~~~l~ 74 (197)
+..+++.|...+-+.|||++|+.|++|++.-.
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TG 41 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAG 41 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHT
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHC
Confidence 44567777888888999999999998877644
No 34
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=49.57 E-value=42 Score=25.75 Aligned_cols=58 Identities=16% Similarity=0.335 Sum_probs=43.2
Q ss_pred HHHHHHhhhccCCeeeeEEEEcCCeEEEEEEec--ccceeeccCcccHHHHHHHHHHHhC
Q 029201 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRAT--RTQNVLGEKGRRIRELTSVVQKRFK 78 (197)
Q Consensus 21 Ir~~l~~~~~~agis~i~I~r~~~~i~I~I~~~--~p~~vig~~g~~i~~l~~~l~~~~~ 78 (197)
..+|+.+.|.-|.+.+|.+.-....-...+.++ .-+..||++|+.++.........++
T Consensus 78 ~~~fI~naLsPA~V~~V~i~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~id 137 (144)
T 2cxc_A 78 LERIVKNLFPGVKIESINVRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFG 137 (144)
T ss_dssp HHHHHHHHSTTSCEEEEEEEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCceEEEEEEeecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeC
Confidence 789999999999999998864344444444554 3446999999999887777776665
No 35
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=48.77 E-value=5.6 Score=28.32 Aligned_cols=36 Identities=17% Similarity=0.414 Sum_probs=25.0
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHHHHHhCCC
Q 029201 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80 (197)
Q Consensus 45 ~i~I~I~~~~p~~vig~~g~~i~~l~~~l~~~~~~~ 80 (197)
.+.+.|-...-+.|||++|+.|++|++.-.-...++
T Consensus 18 ~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~ 53 (97)
T 2ctl_A 18 KLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFP 53 (97)
T ss_dssp EEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECC
T ss_pred eEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEec
Confidence 445555556666899999999999887755444333
No 36
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=47.65 E-value=4.4 Score=28.58 Aligned_cols=35 Identities=17% Similarity=0.471 Sum_probs=24.2
Q ss_pred EEEEEEecccceeeccCcccHHHHHHHHHHHhCCC
Q 029201 46 TEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80 (197)
Q Consensus 46 i~I~I~~~~p~~vig~~g~~i~~l~~~l~~~~~~~ 80 (197)
..+.|-..+-+.|||++|+.|++|++.-.-...++
T Consensus 19 ~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~ 53 (94)
T 2cte_A 19 ATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIP 53 (94)
T ss_dssp EEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCC
T ss_pred EEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeC
Confidence 34444445566799999999999887755544444
No 37
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=46.21 E-value=3.2 Score=30.05 Aligned_cols=32 Identities=28% Similarity=0.494 Sum_probs=23.3
Q ss_pred CCeEEEEEEecccceeeccCcccHHHHHHHHH
Q 029201 43 PVRTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (197)
Q Consensus 43 ~~~i~I~I~~~~p~~vig~~g~~i~~l~~~l~ 74 (197)
|....+.|-..+-+.|||++|+.|++|++.-.
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg 47 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFE 47 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTC
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHC
Confidence 44455556566677899999999988777643
No 38
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=41.12 E-value=50 Score=29.28 Aligned_cols=61 Identities=20% Similarity=0.388 Sum_probs=44.2
Q ss_pred HHHHHHHhhhccC--CeeeeE-EEEcC-CeEEEEEEecccc-----eeeccCcccHHHHHHHHHHHhCCCCCeeEE
Q 029201 20 ELNEVLTRELAED--GYSGVE-VRVTP-VRTEIIIRATRTQ-----NVLGEKGRRIRELTSVVQKRFKFPENSVEL 86 (197)
Q Consensus 20 ~Ir~~l~~~~~~a--gis~i~-I~r~~-~~i~I~I~~~~p~-----~vig~~g~~i~~l~~~l~~~~~~~~~~i~i 86 (197)
.+++.|+.+.+.. |.-.|. |-|.| .+++|-+++..|+ ..||.+|++++.+.+.|. +.+|+|
T Consensus 207 lv~~Lfe~EVPEI~dG~VeIk~iARepG~RaKIAV~s~d~~iDpvGacIG~~G~rI~~i~~eL~------gekIDI 276 (366)
T 1k0r_A 207 LVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELS------GEKIDI 276 (366)
T ss_dssp HHHHHHHHHCHHHHTTSEEEEEEEEETTTEEEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTT------TCEEEE
T ss_pred HHHHHHHhcchhhcCCeEEEEEEEecCCCeEEEEEEeCCCCCCCcccccCCcchHHHHHHHHhC------CCeEEE
Confidence 4777777776653 333333 55665 8999999998877 478999999998888774 366775
No 39
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=39.80 E-value=7.7 Score=27.51 Aligned_cols=33 Identities=12% Similarity=0.379 Sum_probs=23.7
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHHHHHh
Q 029201 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQKRF 77 (197)
Q Consensus 45 ~i~I~I~~~~p~~vig~~g~~i~~l~~~l~~~~ 77 (197)
...+.|-..+-+.|||++|+.+++|++.-.-..
T Consensus 18 t~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I 50 (95)
T 2ctm_A 18 SEDVPLDHRVHARIIGARGKAIRKIMDEFKVDI 50 (95)
T ss_dssp CEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEE
T ss_pred EEEEEECHHHccccCCCCcchHHHHHHHHCCeE
Confidence 445555556667899999999999887754333
No 40
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=39.02 E-value=5.8 Score=30.02 Aligned_cols=31 Identities=10% Similarity=0.414 Sum_probs=23.8
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHHHH
Q 029201 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQK 75 (197)
Q Consensus 45 ~i~I~I~~~~p~~vig~~g~~i~~l~~~l~~ 75 (197)
.+++.|-...-|.+||++|+.|++|++.-.-
T Consensus 6 ~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~ 36 (160)
T 2jzx_A 6 TIRLLMHGKEVGSIIGKKGESVKKMREESGA 36 (160)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHHCS
T ss_pred EEEEEEchhheeeeECCCcHHHHHHHHHHCC
Confidence 4556666677788999999999998877543
No 41
>3elg_A Uncharacterized periplasmic protein; BLIP-like fold, structural genomics, joint center for struct genomics, JCSG; HET: CIT; 1.64A {Bacteroides vulgatus atcc 8482} SCOP: d.98.2.1
Probab=38.83 E-value=43 Score=24.73 Aligned_cols=33 Identities=3% Similarity=0.153 Sum_probs=25.9
Q ss_pred chHHHHHHHHhhhccCCeeeeEEEEc---CCeEEEE
Q 029201 17 FFAELNEVLTRELAEDGYSGVEVRVT---PVRTEII 49 (197)
Q Consensus 17 ~~~~Ir~~l~~~~~~agis~i~I~r~---~~~i~I~ 49 (197)
.-+.+++|+++.|+++.+..+++++. ....+|.
T Consensus 13 LP~~~~~fi~~~fp~~~i~~v~~e~~~~~~~~YeV~ 48 (128)
T 3elg_A 13 LPVAAREMIGKHFSQTKVAYIKIEKDLFQTTSYDVK 48 (128)
T ss_dssp SCHHHHHHHHHHCTTSCEEEEEEEECTTCCEEEEEE
T ss_pred CCHHHHHHHHHHCCCCceEEEEEEcccCcCceEEEE
Confidence 34558999999999999999999997 3345444
No 42
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=38.56 E-value=19 Score=33.76 Aligned_cols=54 Identities=20% Similarity=0.457 Sum_probs=37.3
Q ss_pred HHHHHHHHhhh-ccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHh
Q 029201 19 AELNEVLTREL-AEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRF 77 (197)
Q Consensus 19 ~~Ir~~l~~~~-~~agis~i~I~r~~~~i~I~I~~~~p~~vig~~g~~i~~l~~~l~~~~ 77 (197)
.+|++-+.+.+ .++.+++||.+ +-+|.||+..|..+.. ++.-+++|.+.|+|+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 70 (651)
T 3af5_A 16 RDIRAVVNQMVPKEAKITEIEFE----GPELVIYVKNPEAIMK-DGELIKDLAKVLKKRI 70 (651)
T ss_dssp HHHHHHHTTTSCTTSCEEEEEEC----SSSEEEEESSCC------CCSHHHHHHHHTSCE
T ss_pred HHHHHHHHHhCCCCCeEEEEEEE----CCeEEEEeCCHHHhhc-ccHHHHHHHHHhhceE
Confidence 56888888888 56789998875 4678999999998874 4456777777766644
No 43
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=38.46 E-value=28 Score=32.42 Aligned_cols=74 Identities=18% Similarity=0.237 Sum_probs=46.0
Q ss_pred HHHHHHHhhhc-cCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeeEEEEEEecCCCcCH
Q 029201 20 ELNEVLTRELA-EDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCA 98 (197)
Q Consensus 20 ~Ir~~l~~~~~-~agis~i~I~r~~~~i~I~I~~~~p~~vig~~g~~i~~l~~~l~~~~~~~~~~i~i~i~~i~~p~~~a 98 (197)
+-.++|.+... +||+.+|.. .++.-+|.+++.+|+.++|+.|..++++ .+..+.. ...+..|....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~g~~~~~~~~i----~~~~~~~-------~~~~~~p~~~~ 141 (636)
T 2ycb_A 75 KAIRKIHEIVPEEAKITNISF--DDVTCEVIIEARKPGLVIGKYGSTSREI----VKNTGWA-------PKILRTPPISS 141 (636)
T ss_dssp HHHHHHHHTSCSTTCEEEEEE--ETTTTEEEEEESCTHHHHCTTSHHHHHH----HHHHCCE-------EEEEECCSSCC
T ss_pred HHHHHHHHhCCCccCccceEe--cCCCceEEEEECCCCccccccchhHHHH----hhccCCc-------cceeecCCcch
Confidence 35666666654 578876554 5667788999999999999887655544 4445532 11233555555
Q ss_pred HHHHHHHH
Q 029201 99 IAQAESLR 106 (197)
Q Consensus 99 ~~iA~~ia 106 (197)
..+..-.+
T Consensus 142 ~~~~~i~~ 149 (636)
T 2ycb_A 142 EIIERIRR 149 (636)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 55544333
No 44
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=38.08 E-value=19 Score=33.56 Aligned_cols=54 Identities=20% Similarity=0.382 Sum_probs=40.9
Q ss_pred HHHHHHHHhhh-ccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHh
Q 029201 19 AELNEVLTREL-AEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRF 77 (197)
Q Consensus 19 ~~Ir~~l~~~~-~~agis~i~I~r~~~~i~I~I~~~~p~~vig~~g~~i~~l~~~l~~~~ 77 (197)
.+|++-+.+.+ .++.+++||.+ +-+|.||+..|..+.. ++.-+++|.+.|+|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 61 (636)
T 2ycb_A 7 EEIKRTIMQRLPERVQVAKVEFE----GPEVVIYTKNPEIITE-NGNLIRDIAKDIRKRI 61 (636)
T ss_dssp HHHHHHHHHTSCTTSCEEEEEEE----TTEEEEEESCTHHHHS-CTHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHhCCCCCeEEEEEEE----CCEEEEEeCCHHHhhc-ccHHHHHHHHHhhceE
Confidence 67888888888 57899999987 4688999999998764 3456666666666643
No 45
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=37.32 E-value=33 Score=32.07 Aligned_cols=49 Identities=20% Similarity=0.413 Sum_probs=35.2
Q ss_pred HHHHHHhhhc-cCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHH
Q 029201 21 LNEVLTRELA-EDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTS 71 (197)
Q Consensus 21 Ir~~l~~~~~-~agis~i~I~r~~~~i~I~I~~~~p~~vig~~g~~i~~l~~ 71 (197)
-.++|.+... +||+.+|.. .++.-+|.+++.+|+.++|+.|..++++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~g~~~~~~~~i~~ 134 (651)
T 3af5_A 85 AEKLIFEIVPKEAEITNIAF--DPSVGEVLIEAKKPGLVIGKNGETLRLITQ 134 (651)
T ss_dssp HHHHHHHHSCGGGCCCEEEE--ETTTTEEEEEESSTTTTSCTTSHHHHHHHH
T ss_pred HHHHHHHhCCCccCccceee--cCCCceEEEEECCCCccccccchhHHHHhh
Confidence 5666666554 578876554 566778899999999999998766555433
No 46
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=37.11 E-value=8.3 Score=29.70 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=24.1
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHHHH
Q 029201 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQK 75 (197)
Q Consensus 45 ~i~I~I~~~~p~~vig~~g~~i~~l~~~l~~ 75 (197)
.+++.|....-|.+||++|+.|++|++.-.-
T Consensus 7 ~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~ 37 (178)
T 2anr_A 7 FLKVLIPSYAAGSIIGKGGQTIVQLQKETGA 37 (178)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHHCC
T ss_pred EEEEEEChhHeeeeECCCcHHHHHHHHHhCC
Confidence 3556666677788999999999998877543
No 47
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=37.00 E-value=30 Score=32.34 Aligned_cols=50 Identities=26% Similarity=0.406 Sum_probs=35.9
Q ss_pred HHHHHHHhhhc-cCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHH
Q 029201 20 ELNEVLTRELA-EDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTS 71 (197)
Q Consensus 20 ~Ir~~l~~~~~-~agis~i~I~r~~~~i~I~I~~~~p~~vig~~g~~i~~l~~ 71 (197)
+-.++|.+... +||+.+ |.-.++.-+|.+++.+|+.++|+.|..++++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~g~~~~~~~~i~~ 129 (640)
T 2xr1_A 79 DSISIIEEVVPKESVISS--YYFDPDSGEVIIEAEKPGLVIGKHGATLREITK 129 (640)
T ss_dssp HHHHHHHHHSCGGGCEEE--EEECTTTSEEEEEESSHHHHHCSSSHHHHHHHH
T ss_pred HHHHHHHHhCCCccCccc--eeecCCCceEEEEeCCCCcccccchhhHHHHHh
Confidence 35666666554 578875 444667788999999999999998766555433
No 48
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=37.00 E-value=1e+02 Score=21.34 Aligned_cols=41 Identities=17% Similarity=0.333 Sum_probs=26.2
Q ss_pred eEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHh---CCCCCeeEEE
Q 029201 37 VEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRF---KFPENSVELY 87 (197)
Q Consensus 37 i~I~r~~~~i~I~I~~~~p~~vig~~g~~i~~l~~~l~~~~---~~~~~~i~i~ 87 (197)
|.|+|....++|.|.+.- |.+++.--..|++.+ | -.++.|.
T Consensus 10 ikiqrdgqeieidirvst--------gkeleralqelekalarag--arnvqit 53 (96)
T 2jvf_A 10 IKIQRDGQEIEIDIRVST--------GKELERALQELEKALARAG--ARNVQIT 53 (96)
T ss_dssp EEEEETTEEEEEEEECCS--------SSHHHHHHHHHHHHHHHHT--CSEEEEE
T ss_pred EEEeeCCeEEEEEEEEcc--------cHHHHHHHHHHHHHHHhcc--ccceEEE
Confidence 678888888888888764 666655445555543 3 2456554
No 49
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=34.49 E-value=10 Score=28.58 Aligned_cols=28 Identities=32% Similarity=0.515 Sum_probs=20.9
Q ss_pred EEEEEecccceeeccCcccHHHHHHHHH
Q 029201 47 EIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (197)
Q Consensus 47 ~I~I~~~~p~~vig~~g~~i~~l~~~l~ 74 (197)
++.|-...-+.+||++|+.|++|++.-.
T Consensus 5 ~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg 32 (164)
T 2jvz_A 5 EIMIPAGKAGLVIGKGGETIKQLQERAG 32 (164)
T ss_dssp EEEECTTCHHHHTCTTTHHHHHHHHTSC
T ss_pred EEEechhheeEEECCChHHHHHHHHHhC
Confidence 4455556677899999999988876543
No 50
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=31.96 E-value=10 Score=29.11 Aligned_cols=28 Identities=14% Similarity=0.425 Sum_probs=22.2
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHH
Q 029201 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (197)
Q Consensus 45 ~i~I~I~~~~p~~vig~~g~~i~~l~~~ 72 (197)
.+++.|....-|.|||++|+.|++|++.
T Consensus 105 ~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~ 132 (178)
T 2anr_A 105 QVKIIVPNSTAGLIIGKGGATVKAIMEQ 132 (178)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEchhheeeeECCCcHHHHHHHHH
Confidence 4566777777788999999999887654
No 51
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=31.85 E-value=18 Score=33.85 Aligned_cols=54 Identities=19% Similarity=0.358 Sum_probs=40.0
Q ss_pred HHHHHHHHhhh-ccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHh
Q 029201 19 AELNEVLTREL-AEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRF 77 (197)
Q Consensus 19 ~~Ir~~l~~~~-~~agis~i~I~r~~~~i~I~I~~~~p~~vig~~g~~i~~l~~~l~~~~ 77 (197)
.+|++-+.+.+ .++.+++||.+ +-+|.||+..|..+.. ++.-+++|.+.|+|+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 65 (640)
T 2xr1_A 11 LDLKHKIEKNLPAGVTITDVEFE----GPQLVLYTEEPRKFAD-DGNIIRNLAKELRTRI 65 (640)
T ss_dssp HHHHHHHHHHSCTTCCCCCEEEE----TTEEEEEESCHHHHHH-CTHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHhCCCCCeEEEEEEE----CCEEEEEeCCHHHhcc-ccHHHHHHHHHhhceE
Confidence 56888888888 57899999987 4678999999998763 3455666666666543
No 52
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=31.02 E-value=11 Score=28.44 Aligned_cols=32 Identities=19% Similarity=0.462 Sum_probs=24.0
Q ss_pred CeEEEEEEecccceeeccCcccHHHHHHHHHH
Q 029201 44 VRTEIIIRATRTQNVLGEKGRRIRELTSVVQK 75 (197)
Q Consensus 44 ~~i~I~I~~~~p~~vig~~g~~i~~l~~~l~~ 75 (197)
...++.|-...-|.+||++|+.+++|++.-.-
T Consensus 89 ~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga 120 (160)
T 2jzx_A 89 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 120 (160)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSS
T ss_pred EEEEEEEChhheeeEECCCCHHHHHHHHHhCC
Confidence 34556666667778999999999988776543
No 53
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=30.81 E-value=16 Score=27.57 Aligned_cols=30 Identities=27% Similarity=0.501 Sum_probs=22.6
Q ss_pred EEEEEEecccceeeccCcccHHHHHHHHHH
Q 029201 46 TEIIIRATRTQNVLGEKGRRIRELTSVVQK 75 (197)
Q Consensus 46 i~I~I~~~~p~~vig~~g~~i~~l~~~l~~ 75 (197)
.++.|-...-|.+||++|+.|++|++.-.-
T Consensus 87 ~~i~vp~~~~g~iIGkgG~~I~~i~~~tga 116 (163)
T 3krm_A 87 THIRVPASAAGRVIGKGGKTVNELQNLTAA 116 (163)
T ss_dssp EEEEEETTTHHHHHCGGGHHHHHHHHHHCC
T ss_pred EEEEcChhheeeEEcCCChHHHHHHHHhCC
Confidence 455666667788999999999998766443
No 54
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=30.57 E-value=15 Score=28.17 Aligned_cols=29 Identities=17% Similarity=0.407 Sum_probs=22.1
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHH
Q 029201 45 RTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (197)
Q Consensus 45 ~i~I~I~~~~p~~vig~~g~~i~~l~~~l 73 (197)
.+++.|-...-+.|||++|+.|++|++.-
T Consensus 105 ~~~i~vp~~~~g~iIGkgG~~Ik~I~~~t 133 (174)
T 1j4w_A 105 EFNFIVPTGKTGLIIGKGGETIKSISQQS 133 (174)
T ss_dssp EEEEEEETTTHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEEChHHcCeeECCCchHHHHHHHHH
Confidence 45566666777789999999998876653
No 55
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=30.54 E-value=11 Score=28.84 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=23.3
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHHH
Q 029201 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (197)
Q Consensus 45 ~i~I~I~~~~p~~vig~~g~~i~~l~~~l~ 74 (197)
..++.|-...-+.|||++|+.|++|++.-.
T Consensus 4 ~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg 33 (174)
T 1j4w_A 4 MIDVPIPRFAVGIVIGRNGEMIKKIQNDAG 33 (174)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHHC
T ss_pred EEEEEEChhheeeeecCCchHHHHHHHHhC
Confidence 345666667778899999999998877654
No 56
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=29.85 E-value=78 Score=22.66 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=34.7
Q ss_pred hhhccCCeeeeEEEEcCC---eEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeeEE
Q 029201 27 RELAEDGYSGVEVRVTPV---RTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVEL 86 (197)
Q Consensus 27 ~~~~~agis~i~I~r~~~---~i~I~I~~~~p~~vig~~g~~i~~l~~~l~~~~~~~~~~i~i 86 (197)
++|...|++.+.|..... .-.+.+-+. | ...+.+|++.|+..++++..+..+
T Consensus 8 ~~f~~tg~ati~V~~~~~~~~~~~~~lev~-~-------~~TV~~lK~kI~~k~gip~~qQrL 62 (100)
T 1wju_A 8 DNYRTTGIATIEVFLPPRLKKDRKNLLETR-L-------HITGRELRSKIAETFGLQENYIKI 62 (100)
T ss_dssp CSSSCCCEEEEEEECCTTTCCSSSEEEEEE-S-------SSBHHHHHHHHHHHTTCCSTTCEE
T ss_pred hhhhhcceEEEEEEecCCCCCCcEEEEEeC-C-------cCHHHHHHHHHHHHHCcCHHHeEE
Confidence 467888999888864321 223333332 1 567899999999999987555554
No 57
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=27.90 E-value=1.1e+02 Score=25.06 Aligned_cols=71 Identities=14% Similarity=0.136 Sum_probs=41.7
Q ss_pred chHHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEeccccee-eccCcccHHHHHHHHHHHhCCCCCeeEEEEE
Q 029201 17 FFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNV-LGEKGRRIRELTSVVQKRFKFPENSVELYAE 89 (197)
Q Consensus 17 ~~~~Ir~~l~~~~~~agis~i~I~r~~~~i~I~I~~~~p~~v-ig~~g~~i~~l~~~l~~~~~~~~~~i~i~i~ 89 (197)
...+|++.+.+.-.-.++.++.+.+.....-+.+|+.-|... +..-.+-.+++++.|++.|+ ...+.|.++
T Consensus 207 ~~~~i~~~i~~~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~--~~~v~ih~e 278 (283)
T 3h90_A 207 ERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFP--GSDVIIHQD 278 (283)
T ss_dssp HHHHHHHHHHHSSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHST--TCEEEEEEE
T ss_pred HHHHHHHHHhcCCCcccceeeEEEEECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCC--CCeEEEEec
Confidence 344567766553112456677777777778888888776532 11112234667777777775 345666554
No 58
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=25.14 E-value=17 Score=26.06 Aligned_cols=20 Identities=20% Similarity=0.420 Sum_probs=16.3
Q ss_pred cccceeeccCcccHHHHHHH
Q 029201 53 TRTQNVLGEKGRRIRELTSV 72 (197)
Q Consensus 53 ~~p~~vig~~g~~i~~l~~~ 72 (197)
...+.+||++|+.+++|++.
T Consensus 36 ~~h~~IIG~~G~~Ik~i~~~ 55 (102)
T 2ctf_A 36 WLHRFIIGKKGQNLAKITQQ 55 (102)
T ss_dssp TTHHHHHTTTTCHHHHHHHH
T ss_pred HHHhhhcCCCCccHHHHHHH
Confidence 33446999999999999886
No 59
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=24.51 E-value=1.3e+02 Score=26.22 Aligned_cols=76 Identities=18% Similarity=0.344 Sum_probs=0.0
Q ss_pred HHHHHHhhhcc--CCeeeeE-EEEcC-CeEEEEEEecccc-----eeeccCcccHHHHHHHHHHHhCCCCCeeEEEEEEe
Q 029201 21 LNEVLTRELAE--DGYSGVE-VRVTP-VRTEIIIRATRTQ-----NVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKV 91 (197)
Q Consensus 21 Ir~~l~~~~~~--agis~i~-I~r~~-~~i~I~I~~~~p~-----~vig~~g~~i~~l~~~l~~~~~~~~~~i~i~i~~i 91 (197)
++.+|+.+.+. .|.-.|. |-|.| .+++|-+++..|+ ..+|.+|.+++.+.+.|. +.+|++ +
T Consensus 204 lk~LfelEVPEI~dG~VeI~~iaRepG~R~KiAV~s~d~~iDpvGacvg~~G~ri~~i~~el~------ge~Idi----i 273 (344)
T 1hh2_P 204 VIGLMKLEIPEVENGIVEIKAIAREPGVRTKVAVASNDPNVDPIGACIGEGGSRIAAILKELK------GEKLDV----L 273 (344)
T ss_dssp HHHHHHHHCHHHHHSSEEEEEEEEETTTEEEEEEEESSTTSCHHHHHHCTTSTTHHHHHHHTT------TCEEEE----E
T ss_pred HHHHHHhhcccceeeeEEEEEeecccccccceeEEccCCCccccceeeccCCcEeHHHHHHhC------CCeeeE----E
Q ss_pred cCCCcCHHHHHHHHH
Q 029201 92 NNRGLCAIAQAESLR 106 (197)
Q Consensus 92 ~~p~~~a~~iA~~ia 106 (197)
.-.+-.+.++++.++
T Consensus 274 ~~s~d~~~fi~nal~ 288 (344)
T 1hh2_P 274 KWSDDPKQLIANALA 288 (344)
T ss_dssp ECCSSHHHHHHHHTC
T ss_pred ecCCCHHHHHHHhcC
No 60
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=21.91 E-value=27 Score=26.28 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=20.2
Q ss_pred EEEEEEecccceeeccCcccHHHHHHH
Q 029201 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (197)
Q Consensus 46 i~I~I~~~~p~~vig~~g~~i~~l~~~ 72 (197)
..|.+--..-+.+||++|+.++.+++.
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~ 95 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDK 95 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHH
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHH
Confidence 555555566678999999998877655
No 61
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=21.21 E-value=62 Score=20.26 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=24.0
Q ss_pred cccHHHHHHHHHHHhCCCCCeeEEEEEEecC
Q 029201 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNN 93 (197)
Q Consensus 63 g~~i~~l~~~l~~~~~~~~~~i~i~i~~i~~ 93 (197)
.+-++.+.+.+.+.+|.+...+.|.+.++..
T Consensus 16 ~~L~~~it~~~~~~lg~~~~~v~V~i~E~~~ 46 (62)
T 3m20_A 16 REFVERLTSVAAEIYGMDRSAITILIHEPPA 46 (62)
T ss_dssp HHHHHHHHHHHHHHHTCCTTSCEEEEECCCG
T ss_pred HHHHHHHHHHHHHHhCcCcceEEEEEEEeCH
Confidence 3446778888899999887788888877753
No 62
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=20.80 E-value=2.9e+02 Score=21.14 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=49.7
Q ss_pred HHHHHHHHhhhccCCeeeeEEEEc--CCeEEEEEEecccceeeccCcccHHHHHHHHHHHhC--CCCCeeEEEEEEecCC
Q 029201 19 AELNEVLTRELAEDGYSGVEVRVT--PVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK--FPENSVELYAEKVNNR 94 (197)
Q Consensus 19 ~~Ir~~l~~~~~~agis~i~I~r~--~~~i~I~I~~~~p~~vig~~g~~i~~l~~~l~~~~~--~~~~~i~i~i~~i~~p 94 (197)
..+.+.+...+.. |+.-++++-. ...-.+.||+.+|+ |-.=.....+...|...+. ..++--.=+..||..|
T Consensus 12 ~~v~~li~p~~~~-g~eLvdve~~~~g~~~~LrV~ID~~~---gi~lddC~~vSr~is~~LD~~~~d~i~~~Y~LEVSSP 87 (164)
T 1ib8_A 12 ELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPE---GITLNDTADLTEMISPVLDTIKPDPFPEQYFLEITSP 87 (164)
T ss_dssp HHHHHHHHHHHCS-SSEEEEEEEEEETTEEEEEEEEECSS---CCCHHHHHHHHHHHGGGTTTCCSCCCCSCEEEEEECC
T ss_pred HHHHHHHHHHHcC-CcEEEEEEEEecCCCcEEEEEEECCC---CCCHHHHHHHHHHHHHHhccccccCCCCCeEEEEeCC
Confidence 4588888888888 9887777654 56667777888874 1122234567888888886 4332112245689999
Q ss_pred CcCH
Q 029201 95 GLCA 98 (197)
Q Consensus 95 ~~~a 98 (197)
.++=
T Consensus 88 GldR 91 (164)
T 1ib8_A 88 GLER 91 (164)
T ss_dssp SSSS
T ss_pred CCCC
Confidence 8664
No 63
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=20.36 E-value=12 Score=33.28 Aligned_cols=28 Identities=7% Similarity=0.237 Sum_probs=20.8
Q ss_pred cccceeeccCc--ccHHHHHHHHHHHhCCC
Q 029201 53 TRTQNVLGEKG--RRIRELTSVVQKRFKFP 80 (197)
Q Consensus 53 ~~p~~vig~~g--~~i~~l~~~l~~~~~~~ 80 (197)
.....+||++| +.|++++++-.-...++
T Consensus 39 ~~Hs~IIGkgG~~sNIkkImeEtgv~I~fP 68 (376)
T 3n89_A 39 QYYSLMTSDNGDHENVASIMAETNTLIQLP 68 (376)
T ss_dssp GGHHHHHSCCSSSCSHHHHHHHHTCEEECC
T ss_pred hhhhhhccCCChHHHHHHHHHHhCCeEECC
Confidence 33447999999 99999988776554444
Done!