BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029202
         (197 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active
          Fragment Of Sec31
          Length = 772

 Score = 30.4 bits (67), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 54 DINSARFLWKSIPSTIKDSRAEVV 77
          DIN  RF W   PST  D+ + VV
Sbjct: 12 DINGVRFTWNVFPSTRSDANSNVV 35


>pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex
 pdb|1M2O|C Chain C, Crystal Structure Of The Sec23-Sar1 Complex
 pdb|1M2V|A Chain A, Crystal Structure Of The Yeast Sec2324 HETERODIMER
          Length = 768

 Score = 30.4 bits (67), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 54 DINSARFLWKSIPSTIKDSRAEVV 77
          DIN  RF W   PST  D+ + VV
Sbjct: 8  DINGVRFTWNVFPSTRSDANSNVV 31


>pdb|3CFD|L Chain L, Purple-fluorescent Antibody Ep2-25c10 In Complex With Its
           Stilbene Hapten
 pdb|3CFD|A Chain A, Purple-fluorescent Antibody Ep2-25c10 In Complex With Its
           Stilbene Hapten
 pdb|3CFE|L Chain L, Crystal Structure Of Purple-Fluorescent Antibody Ep2-25c10
 pdb|3CFE|A Chain A, Crystal Structure Of Purple-Fluorescent Antibody Ep2-25c10
          Length = 214

 Score = 27.3 bits (59), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 5/94 (5%)

Query: 101 FDWSQEAQALVAAFSELYTKRMFQLLLSAYS-TISTQDTALFL-GMNEDDAAYYVQQQGW 158
            +W Q+           YT R+   + S +S + S  D +L +  +++DD A Y  QQG 
Sbjct: 33  LNWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISNLDQDDIATYFCQQGT 92

Query: 159 TLDP---ASRMLTVKKQPLVTEQKLDPSKLQRLT 189
           TL P       L +K+        + P   ++LT
Sbjct: 93  TLPPTFGGGTKLEIKRADAAPTVSIFPPSSEQLT 126


>pdb|1RYP|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
           Angstroms Resolution
 pdb|1RYP|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
           Angstroms Resolution
 pdb|1G65|G Chain G, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
           Molecular Basis For Selectivity Of
           Alpha,Beta-Epoxyketone Proteasome Inhibitors
 pdb|1G65|U Chain U, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
           Molecular Basis For Selectivity Of
           Alpha,Beta-Epoxyketone Proteasome Inhibitors
 pdb|1JD2|G Chain G, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
           Complex: A Non- Covalent Proteasome Inhibitor
 pdb|1JD2|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
           Complex: A Non- Covalent Proteasome Inhibitor
 pdb|2F16|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Bortezomib
 pdb|2F16|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Bortezomib
 pdb|2FAK|G Chain G, Crystal Structure Of Salinosporamide A In Complex With The
           Yeast 20s Proteasome
 pdb|2FAK|U Chain U, Crystal Structure Of Salinosporamide A In Complex With The
           Yeast 20s Proteasome
 pdb|2GPL|G Chain G, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
           Proteasome Inhibitors
 pdb|2GPL|U Chain U, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
           Proteasome Inhibitors
 pdb|3D29|G Chain G, Proteasome Inhibition By Fellutamide B
 pdb|3D29|U Chain U, Proteasome Inhibition By Fellutamide B
 pdb|3E47|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Homobelactosin C
 pdb|3E47|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Homobelactosin C
 pdb|3DY3|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex With
           The Epimer Form Of Spirolactacystin
 pdb|3DY3|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex With
           The Epimer Form Of Spirolactacystin
 pdb|3DY4|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex With
           Spirolactacystin
 pdb|3DY4|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex With
           Spirolactacystin
 pdb|3GPJ|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Syringolin B
 pdb|3GPJ|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Syringolin B
 pdb|3GPT|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Salinosporamide Derivatives: Slow Substrate Ligand
 pdb|3GPT|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Salinosporamide Derivatives: Slow Substrate Ligand
 pdb|3GPW|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Salinosporamide Derivatives: Irreversible Inhibitor
           Ligand
 pdb|3GPW|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Salinosporamide Derivatives: Irreversible Inhibitor
           Ligand
 pdb|3HYE|G Chain G, Crystal Structure Of 20s Proteasome In Complex With
           Hydroxylated Salinosporamide
 pdb|3HYE|U Chain U, Crystal Structure Of 20s Proteasome In Complex With
           Hydroxylated Salinosporamide
 pdb|1VSY|A Chain A, Proteasome Activator Complex
 pdb|1VSY|O Chain O, Proteasome Activator Complex
 pdb|3L5Q|A Chain A, Proteasome Activator Complex
 pdb|3L5Q|C Chain C, Proteasome Activator Complex
 pdb|3MG4|G Chain G, Structure Of Yeast 20s Proteasome With Compound 1
 pdb|3MG4|U Chain U, Structure Of Yeast 20s Proteasome With Compound 1
 pdb|3MG0|G Chain G, Structure Of Yeast 20s Proteasome With Bortezomib
 pdb|3MG0|U Chain U, Structure Of Yeast 20s Proteasome With Bortezomib
 pdb|3OKJ|G Chain G, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
           Structure Motif For Proteasome Inhibition
 pdb|3OKJ|U Chain U, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
           Structure Motif For Proteasome Inhibition
 pdb|3OEU|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           24
 pdb|3OEU|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           24
 pdb|3OEV|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           25
 pdb|3OEV|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           25
 pdb|3TDD|G Chain G, Crystal Structure Of Yeast Cp In Complex With Belactosin C
 pdb|3TDD|U Chain U, Crystal Structure Of Yeast Cp In Complex With Belactosin C
 pdb|3SHJ|G Chain G, Proteasome In Complex With Hydroxyurea Derivative Hu10
 pdb|3SHJ|U Chain U, Proteasome In Complex With Hydroxyurea Derivative Hu10
 pdb|3SDI|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           20
 pdb|3SDI|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           20
 pdb|3SDK|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           34
 pdb|3SDK|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           34
 pdb|4GK7|G Chain G, Yeast 20s Proteasome In Complex With The
           Syringolin-Glidobactin Chimera
 pdb|4GK7|U Chain U, Yeast 20s Proteasome In Complex With The
           Syringolin-Glidobactin Chimera
 pdb|4FZC|G Chain G, 20s Yeast Proteasome In Complex With Cepafungin I
 pdb|4FZC|U Chain U, 20s Yeast Proteasome In Complex With Cepafungin I
 pdb|4FZG|G Chain G, 20s Yeast Proteasome In Complex With Glidobactin
 pdb|4FZG|U Chain U, 20s Yeast Proteasome In Complex With Glidobactin
          Length = 243

 Score = 26.6 bits (57), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 100 GFDWSQEAQA-LVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGM-NEDDAAYYVQQQG 157
           G+D   +  A  +A  S++YT+R +   L    T  + D  L   +   D A YYV  + 
Sbjct: 100 GYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKA 159

Query: 158 WTLDPASRMLTVKKQPLVTEQKLD 181
               P  + +T   +    + K+D
Sbjct: 160 TATGPKQQEITTNLENHFKKSKID 183


>pdb|1G0U|G Chain G, A Gated Channel Into The Proteasome Core Particle
 pdb|1G0U|U Chain U, A Gated Channel Into The Proteasome Core Particle
 pdb|1FNT|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast In
           Complex With The Proteasome Activator Pa26 From
           Trypanosome Brucei At 3.2 Angstroms Resolution
 pdb|1FNT|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast In
           Complex With The Proteasome Activator Pa26 From
           Trypanosome Brucei At 3.2 Angstroms Resolution
 pdb|1Z7Q|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast In
           Complex With The Proteasome Activator Pa26 From
           Trypanosome Brucei At 3.2 Angstroms Resolution
 pdb|1Z7Q|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast In
           Complex With The Proteasome Activator Pa26 From
           Trypanosome Brucei At 3.2 Angstroms Resolution
 pdb|2ZCY|G Chain G, Yeast 20s Proteasome:syringolin A-Complex
 pdb|2ZCY|U Chain U, Yeast 20s Proteasome:syringolin A-Complex
 pdb|3BDM|G Chain G, Yeast 20s Proteasome:glidobactin A-Complex
 pdb|3BDM|U Chain U, Yeast 20s Proteasome:glidobactin A-Complex
 pdb|3NZJ|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex With
           Ligand 2a
 pdb|3NZJ|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex With
           Ligand 2a
 pdb|3NZW|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With 2b
 pdb|3NZW|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With 2b
 pdb|3NZX|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Ligand 2c
 pdb|3NZX|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
           With Ligand 2c
 pdb|3MG6|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           6
 pdb|3MG6|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           6
 pdb|3MG7|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           8
 pdb|3MG7|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           8
 pdb|3MG8|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           16
 pdb|3MG8|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
           16
 pdb|3UN4|G Chain G, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
 pdb|3UN4|U Chain U, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
 pdb|3UN8|G Chain G, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
 pdb|3UN8|U Chain U, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
 pdb|4B4T|A Chain A, Near-Atomic Resolution Structural Model Of The Yeast 26s
           Proteasome
 pdb|4G4S|A Chain A, Structure Of Proteasome-Pba1-Pba2 Complex
 pdb|4INR|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
           Lu102
 pdb|4INR|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
           Lu102
 pdb|4INT|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
           Lu122
 pdb|4INT|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
           Lu122
 pdb|4INU|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
           Lu112
 pdb|4INU|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
           Lu112
          Length = 252

 Score = 26.6 bits (57), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 100 GFDWSQEAQA-LVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGM-NEDDAAYYVQQQG 157
           G+D   +  A  +A  S++YT+R +   L    T  + D  L   +   D A YYV  + 
Sbjct: 109 GYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKA 168

Query: 158 WTLDPASRMLTVKKQPLVTEQKLD 181
               P  + +T   +    + K+D
Sbjct: 169 TATGPKQQEITTNLENHFKKSKID 192


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,726,312
Number of Sequences: 62578
Number of extensions: 216237
Number of successful extensions: 602
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 599
Number of HSP's gapped (non-prelim): 9
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)