BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029202
(197 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P43255|CSN8_ARATH COP9 signalosome complex subunit 8 OS=Arabidopsis thaliana GN=CSN8
PE=1 SV=1
Length = 197
Score = 302 bits (773), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 141/197 (71%), Positives = 168/197 (85%)
Query: 1 MDFSPLTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARF 60
MD SP+ +ALA+KS++KIADICD LML+VA+EGI + D+WPY IHLLGY+YV+D +SARF
Sbjct: 1 MDLSPVKEALAAKSFDKIADICDTLMLQVASEGIEYHDDWPYAIHLLGYFYVDDCDSARF 60
Query: 61 LWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTK 120
LWK IP+ IK+ + EVVAAW IGQ LWT DYAGVY+AIRG+DWSQEA+ +VAAFS+LYTK
Sbjct: 61 LWKRIPTAIKERKPEVVAAWGIGQKLWTHDYAGVYEAIRGYDWSQEAKDMVAAFSDLYTK 120
Query: 121 RMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQPLVTEQKL 180
RMFQLLLSAYSTI+ D ALFLGM EDDA YV + GWT+D AS+M +VKKQ + EQK+
Sbjct: 121 RMFQLLLSAYSTITIHDLALFLGMTEDDATTYVVENGWTVDAASQMASVKKQAVKREQKV 180
Query: 181 DPSKLQRLTEYVFHLEH 197
D SKLQRLTEYVFHLEH
Sbjct: 181 DSSKLQRLTEYVFHLEH 197
>sp|Q6GQA6|CSN8_XENLA COP9 signalosome complex subunit 8 OS=Xenopus laevis GN=csn8 PE=2
SV=2
Length = 195
Score = 119 bits (299), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
Query: 45 HLLGYYYV-NDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDW 103
LL Y + ND+N+AR+LWK IPS IK S +E+ W++GQ +W RD+ G+Y +I + W
Sbjct: 41 QLLALYLLHNDLNNARYLWKRIPSAIKSSHSELGGIWEVGQKIWQRDFPGIYTSISAYQW 100
Query: 104 SQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPA 163
S+ Q ++ A + +R F L+ AY++IS D A F+G+ ++A V +QGW D A
Sbjct: 101 SENIQQIMEAVRDATQQRAFGLVSQAYTSISADDFAAFVGLPVEEAVKGVLEQGWQADSA 160
Query: 164 SRMLTVKKQPLVTEQKLDPS--KLQRLTEYVFHLEH 197
+ M+ KK P L P+ +L RLT+YV LE+
Sbjct: 161 TGMVMPKK-PDSAPLSLIPNEQQLARLTDYVAFLEN 195
>sp|Q6P637|CSN8_XENTR COP9 signalosome complex subunit 8 OS=Xenopus tropicalis GN=csn8
PE=2 SV=1
Length = 193
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
Query: 45 HLLGYYYV-NDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDW 103
LL Y + ND+N+AR+LWK IP IK + +E+ W++GQ +W RD+ G+Y +I W
Sbjct: 39 QLLALYLLHNDMNNARYLWKRIPPAIKSAHSELGGIWEVGQKIWQRDFPGIYTSISACQW 98
Query: 104 SQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPA 163
S+ Q ++ A + +R F L+ AY++IS D A F+G++ ++A V +QGW D A
Sbjct: 99 SEAIQPVMEAVRDATRRRAFGLVSQAYTSISADDFAAFVGLSVEEAVKGVIEQGWQADLA 158
Query: 164 SRMLTVKKQPLVTEQKLDPS--KLQRLTEYVFHLEH 197
+RM+ KK P L P+ +L RLT+YV LE+
Sbjct: 159 TRMVMPKK-PDSAPLSLIPNEQQLARLTDYVAFLEN 193
>sp|Q7ZUZ0|CSN8_DANRE COP9 signalosome complex subunit 8 OS=Danio rerio GN=cops8 PE=2
SV=1
Length = 191
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 91/154 (59%), Gaps = 3/154 (1%)
Query: 46 LLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQ 105
L+ Y ND+N+AR+LWK IP IK + E+ A W +GQ +W RD+ G+Y AI + WS+
Sbjct: 39 LVLYLLHNDMNNARYLWKRIPQAIKTANPEMAAIWAVGQRIWQRDFPGIYSAIAAYQWSE 98
Query: 106 EAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASR 165
++ A E +R + L+ AY++IS +D A F+G + ++A V GW DP +R
Sbjct: 99 SILPVMEALRESTRRRAYGLVAQAYTSISAEDFAAFVGYSVEEAVKGVVSHGWQADPNTR 158
Query: 166 MLTVKKQPLVTEQKLDPS--KLQRLTEYVFHLEH 197
M+ +K P L P+ +L RLT+YV LE+
Sbjct: 159 MIMPQK-PDPPPVSLVPNEQQLARLTDYVAFLEN 191
>sp|Q6P4Z9|CSN8_RAT COP9 signalosome complex subunit 8 OS=Rattus norvegicus GN=Cops8
PE=2 SV=1
Length = 209
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 104/202 (51%), Gaps = 22/202 (10%)
Query: 14 SYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYV-NDINSARFLWKSIPSTIKDS 72
S+ K+ D C++ L+ A GI P LL Y + ND+N+AR+LWK IP IK +
Sbjct: 12 SFRKLLDQCENQELE-APGGIATP---PVYGQLLALYLLQNDMNNARYLWKRIPPAIKSA 67
Query: 73 RAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYST 132
+E+ W +GQ +W RD+ G+Y I WS+ Q ++ A + +R F L+ AY++
Sbjct: 68 NSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTS 127
Query: 133 ISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQ-------------PLVTEQK 179
I D A F+G+ ++A V +QGW D +RM+ +K PL
Sbjct: 128 IIADDFAAFVGLPVEEAVKGVLEQGWQADSTTRMVLPRKPAPGALDVSLNRFIPLSEPAP 187
Query: 180 LDP----SKLQRLTEYVFHLEH 197
+ P +L RLT+YV LE+
Sbjct: 188 VPPIPNEQQLARLTDYVAFLEN 209
>sp|Q8VBV7|CSN8_MOUSE COP9 signalosome complex subunit 8 OS=Mus musculus GN=Cops8 PE=1
SV=1
Length = 209
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 104/202 (51%), Gaps = 22/202 (10%)
Query: 14 SYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYV-NDINSARFLWKSIPSTIKDS 72
S+ K+ D C++ L+ A GI P LL Y + ND+N+AR+LWK IP IK +
Sbjct: 12 SFRKLLDQCENQELE-APGGIATP---PVYGQLLALYLLQNDMNNARYLWKRIPPAIKSA 67
Query: 73 RAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYST 132
+E+ W +GQ +W RD+ G+Y I WS+ Q ++ A + +R F L+ AY++
Sbjct: 68 NSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTS 127
Query: 133 ISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQ-------------PLVTEQK 179
I D A F+G+ ++A V +QGW D +RM+ +K PL
Sbjct: 128 IIADDFAAFVGLPVEEAVKGVLEQGWQADSTTRMVLPRKPASGTLDVSLNRFIPLSEPAP 187
Query: 180 LDP----SKLQRLTEYVFHLEH 197
+ P +L RLT+YV LE+
Sbjct: 188 VPPIPNEQQLARLTDYVAFLEN 209
>sp|Q5RF54|CSN8_PONAB COP9 signalosome complex subunit 8 OS=Pongo abelii GN=COPS8 PE=2
SV=1
Length = 209
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 105/202 (51%), Gaps = 22/202 (10%)
Query: 14 SYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYV-NDINSARFLWKSIPSTIKDS 72
S++K+ D C++ L+ A GI P LL Y + ND+N+AR+LWK IP IK +
Sbjct: 12 SFKKLLDQCENQELE-APGGIATP---PVYGQLLALYLLHNDMNNARYLWKRIPPAIKSA 67
Query: 73 RAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYST 132
+E+ W +GQ +W RD+ G+Y I WS+ Q ++ A + +R F L+ AY++
Sbjct: 68 NSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTS 127
Query: 133 ISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQ-------------PLVTEQK 179
I D A F+G+ ++A + +QGW D +RM+ +K PL
Sbjct: 128 IVADDFAAFVGLPVEEAVKGILEQGWQADSTTRMVLPRKPVAGALDVSFNKFIPLSEPAP 187
Query: 180 LDP----SKLQRLTEYVFHLEH 197
+ P +L RLT+YV LE+
Sbjct: 188 VPPIPNEQQLARLTDYVAFLEN 209
>sp|Q99627|CSN8_HUMAN COP9 signalosome complex subunit 8 OS=Homo sapiens GN=COPS8 PE=1
SV=1
Length = 209
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 105/202 (51%), Gaps = 22/202 (10%)
Query: 14 SYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYV-NDINSARFLWKSIPSTIKDS 72
S++K+ D C++ L+ A GI P LL Y + ND+N+AR+LWK IP IK +
Sbjct: 12 SFKKLLDQCENQELE-APGGIATP---PVYGQLLALYLLHNDMNNARYLWKRIPPAIKSA 67
Query: 73 RAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYST 132
+E+ W +GQ +W RD+ G+Y I WS+ Q ++ A + +R F L+ AY++
Sbjct: 68 NSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTS 127
Query: 133 ISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQ-------------PLVTEQK 179
I D A F+G+ ++A + +QGW D +RM+ +K PL
Sbjct: 128 IIADDFAAFVGLPVEEAVKGILEQGWQADSTTRMVLPRKPVAGALDVSFNKFIPLSEPAP 187
Query: 180 LDP----SKLQRLTEYVFHLEH 197
+ P +L RLT+YV LE+
Sbjct: 188 VPPIPNEQQLARLTDYVAFLEN 209
>sp|Q75K24|CSN8_DICDI COP9 signalosome complex subunit 8 OS=Dictyostelium discoideum
GN=csn8 PE=1 SV=1
Length = 196
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 101/199 (50%), Gaps = 9/199 (4%)
Query: 1 MDFSPLTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARF 60
M F+ + + ++SK+++ I D C ++ ++ I + Y ++LL Y ND+ +A+
Sbjct: 1 MAFTEIANLISSKNFKAILDYCQ--RQEIESKNIDLIKSY-YGVYLLSYLINNDLINAKH 57
Query: 61 LWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTK 120
LWK IP+ K S ++ + I + + + Y ++ + + + E + +
Sbjct: 58 LWKRIPNDFKQSNQQLKNIYTIIKSISQTNPTITYTSL-SINIGDDYTPFITTLKENFQQ 116
Query: 121 RMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQPLVTEQKL 180
R F+L+ +AYS+I+ D + +LG++ +D + + W D AS T+K P+ +
Sbjct: 117 RTFELISNAYSSITVNDCSSYLGISPEDTIKFTTSKCWEHDKASN--TLKPVPIQKQSSE 174
Query: 181 DPS---KLQRLTEYVFHLE 196
P+ +++ LT YV LE
Sbjct: 175 LPTGNQQIRSLTSYVLFLE 193
>sp|Q7KTH8|CSN8_DROME COP9 signalosome complex subunit 8 OS=Drosophila melanogaster
GN=CSN8 PE=1 SV=1
Length = 182
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 5/151 (3%)
Query: 49 YYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQ 108
Y Y N + A+ LW +P+ ++D + E++ + L +YA + I+ ++WS+ +
Sbjct: 35 YLYQNKLADAKLLWMRVPANLRDDK-ELIQLNLLNIALQNNNYADFFKHIK-YEWSERVK 92
Query: 109 ALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWT--LDPASRM 166
+ V + +F+L+ SAY +I + M+ED+ + WT LD +
Sbjct: 93 SPVEDLLNKQREELFKLMGSAYMSIYQHNLLELSLMSEDELKHACAALNWTEELDGDRVI 152
Query: 167 LTVKKQPLVTEQKLDPSKLQRLTEYVFHLEH 197
L K Q + D +L +LTE+V LE+
Sbjct: 153 LKPKVQEAPPARGND-DQLLKLTEFVTFLEN 182
>sp|P68396|CSN8_BRAOL COP9 signalosome complex subunit 8 (Fragment) OS=Brassica oleracea
GN=CSN8 PE=1 SV=1
Length = 23
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/23 (86%), Positives = 23/23 (100%)
Query: 86 LWTRDYAGVYDAIRGFDWSQEAQ 108
LWTRDYAGVY+AIRGFDWSQ+A+
Sbjct: 1 LWTRDYAGVYEAIRGFDWSQDAK 23
>sp|P0C624|CSN8_EMENI COP9 signalosome complex subunit 8 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnH PE=1 SV=1
Length = 212
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 9/147 (6%)
Query: 42 YVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIG-QHLWTRDYAGVYDAIRG 100
Y + + I AR L + IP I SR + + + + +W + +Y +R
Sbjct: 53 YTAFFFSHLLTDQICEARALTRRIPREI--SRLDAMQTCSLLLRAVWQSKHTEIYKILRE 110
Query: 101 FDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMN----EDDAAYYVQQQ 156
W +Q LV + + ++ + ++Y TI A +LG++ E D
Sbjct: 111 LPWPGRSQPLVQRYESYFQEKTLVEMSNSYETIRIAAAATYLGLDPAAVEGDIIEKFTAC 170
Query: 157 GWTLDPASRMLTVKKQPLVTEQKLDPS 183
GW D ++L K P+VT D S
Sbjct: 171 GWKWDSEKQLLHPK--PVVTAPPKDDS 195
>sp|O42897|RPN3_SCHPO Probable 26S proteasome regulatory subunit rpn3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpn3 PE=3 SV=2
Length = 497
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 39 EWPYVIHLLGYYYVNDINSAR-FLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDA 97
E Y +H++ + +I R F KS+ T+ V +I Q + D DA
Sbjct: 289 EAVYKLHIVVQLLMGEIPERRIFRQKSLEKTL-------VPYLRISQAVRIGDLCAFTDA 341
Query: 98 IRGFDWSQEAQAL---VAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQ 154
+ ++ L + K +++ +YS IS +D + LG++ +++A Y+
Sbjct: 342 LSKYEAEFRFDGLYTLICRLRHTVIKTGLRMISLSYSRISLRDVCIKLGLDSEESAEYIV 401
Query: 155 QQG 157
+G
Sbjct: 402 AKG 404
>sp|A7F080|EIF3K_SCLS1 Eukaryotic translation initiation factor 3 subunit K OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)
GN=SS1G_10997 PE=3 SV=1
Length = 245
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 61/131 (46%), Gaps = 6/131 (4%)
Query: 44 IHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTR-DYAGVYDAIRGFD 102
+HLL + + I+S+ ++P+ +E V + L + +Y+ + + D
Sbjct: 90 LHLLPPHILTPISSS----SALPAAGDAPLSEAVQKLAVLNTLLSSANYSQFWSTLDSDD 145
Query: 103 WSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQ-QGWTLD 161
+ A V+ F EL R+ + + I + + +LGMN + ++++ GWT++
Sbjct: 146 LYADLIADVSGFEELIRIRIASTISQSVREIPSSELENWLGMNGEAFEKFIKEVCGWTIE 205
Query: 162 PASRMLTVKKQ 172
S ++ + K+
Sbjct: 206 NGSVIVPLNKE 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,454,275
Number of Sequences: 539616
Number of extensions: 2607924
Number of successful extensions: 6111
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6097
Number of HSP's gapped (non-prelim): 15
length of query: 197
length of database: 191,569,459
effective HSP length: 111
effective length of query: 86
effective length of database: 131,672,083
effective search space: 11323799138
effective search space used: 11323799138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)