Query 029202
Match_columns 197
No_of_seqs 117 out of 230
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 14:49:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029202.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029202hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rz4_A Eukaryotic translation 99.9 1.3E-26 4.4E-31 191.6 10.9 151 42-197 66-221 (226)
2 4b0z_A RPN12, 26S proteasome r 99.9 1.2E-24 4.1E-29 180.1 18.9 127 42-170 100-228 (229)
3 4b4t_T 26S proteasome regulato 99.9 6.2E-23 2.1E-27 174.0 13.9 130 42-172 106-239 (274)
4 3t5v_A Nuclear mRNA export pro 99.2 1.6E-10 5.5E-15 99.5 13.5 121 42-166 119-259 (316)
5 3txn_A 26S proteasome regulato 98.0 0.00016 5.5E-09 63.7 14.0 120 72-192 252-383 (394)
6 4b4t_R RPN7, 26S proteasome re 97.6 0.00059 2E-08 60.3 12.2 104 71-174 281-395 (429)
7 1ufm_A COP9 complex subunit 4; 96.7 0.0012 4.1E-08 45.8 3.7 61 113-173 11-77 (84)
8 4b4t_Q 26S proteasome regulato 96.6 0.069 2.4E-06 44.9 14.5 122 72-193 292-424 (434)
9 4b4t_P 26S proteasome regulato 96.0 0.031 1.1E-06 49.5 9.6 98 74-173 291-406 (445)
10 4b4t_O 26S proteasome regulato 94.4 0.077 2.6E-06 46.3 6.7 97 72-169 244-350 (393)
11 4b4t_S RPN3, 26S proteasome re 93.6 0.025 8.5E-07 51.5 2.0 95 76-170 342-446 (523)
12 3t5x_A PCI domain-containing p 93.4 0.17 5.9E-06 40.2 6.4 88 79-172 83-193 (203)
13 2heo_A Z-DNA binding protein 1 84.5 2.1 7.2E-05 27.5 5.2 44 117-160 10-56 (67)
14 3e21_A HFAF1, FAS-associated f 83.5 0.24 8.1E-06 30.1 0.1 35 135-169 9-44 (45)
15 3t5v_B Nuclear mRNA export pro 80.2 2.5 8.4E-05 37.7 5.5 88 57-144 273-374 (455)
16 1y6u_A XIS, excisionase from t 77.0 3.7 0.00013 26.9 4.3 39 132-170 16-57 (70)
17 2oqg_A Possible transcriptiona 75.7 6.8 0.00023 26.8 5.8 54 105-160 9-65 (114)
18 1u2w_A CADC repressor, cadmium 74.6 18 0.00061 25.5 8.0 56 104-160 29-87 (122)
19 1r1u_A CZRA, repressor protein 74.0 7.8 0.00027 26.6 5.7 53 106-160 15-70 (106)
20 1y0u_A Arsenical resistance op 73.7 9.6 0.00033 25.5 6.1 56 106-164 20-78 (96)
21 2lkp_A Transcriptional regulat 73.0 8.9 0.0003 26.6 5.9 53 106-160 21-76 (119)
22 3cuo_A Uncharacterized HTH-typ 72.2 7.1 0.00024 25.9 5.0 55 105-160 12-69 (99)
23 3pqk_A Biofilm growth-associat 71.3 9.2 0.00031 25.8 5.5 54 105-160 11-67 (102)
24 3f6o_A Probable transcriptiona 70.8 8.3 0.00028 27.0 5.4 54 105-160 6-62 (118)
25 1r1t_A Transcriptional repress 70.0 9.2 0.00031 27.2 5.5 53 106-160 35-90 (122)
26 3jth_A Transcription activator 69.3 6.1 0.00021 26.5 4.2 54 105-160 11-67 (98)
27 2gmg_A Hypothetical protein PF 67.8 2.7 9.4E-05 29.9 2.1 31 116-148 10-43 (105)
28 2htj_A P fimbrial regulatory p 67.0 8.2 0.00028 25.1 4.4 41 119-160 2-45 (81)
29 2kko_A Possible transcriptiona 66.4 5.2 0.00018 27.7 3.4 53 106-160 14-69 (108)
30 2lju_A Putative oxidoreductase 65.0 6.8 0.00023 28.0 3.7 23 145-171 68-90 (108)
31 1nd9_A Translation initiation 63.9 4.3 0.00015 23.8 2.2 27 132-158 2-28 (49)
32 1ub9_A Hypothetical protein PH 63.2 28 0.00097 22.7 6.7 48 112-160 11-61 (100)
33 3lsg_A Two-component response 62.0 18 0.00062 24.3 5.6 41 119-159 4-47 (103)
34 1ng7_A Poliovirus 3A-N, genome 62.0 3.2 0.00011 26.6 1.4 17 145-161 30-46 (60)
35 2zkz_A Transcriptional repress 59.4 23 0.00077 23.9 5.6 51 104-155 14-64 (99)
36 2k9s_A Arabinose operon regula 57.1 18 0.00061 24.5 4.8 41 120-160 6-49 (107)
37 3to7_A Histone acetyltransfera 56.3 26 0.00089 29.0 6.3 50 121-170 197-246 (276)
38 1v92_A NSFL1 cofactor P47; 3-h 55.8 12 0.00041 21.8 3.2 28 135-162 9-36 (46)
39 2jya_A AGR_C_3324P, uncharacte 55.0 7.4 0.00025 27.7 2.4 17 145-161 60-76 (106)
40 1z96_A DNA-damage, UBA-domain 54.8 10 0.00035 21.3 2.7 26 135-161 8-33 (40)
41 3dv8_A Transcriptional regulat 54.0 64 0.0022 23.9 8.4 37 132-168 169-208 (220)
42 2elj_A Transcriptional adapter 53.7 38 0.0013 22.9 5.9 37 122-158 48-87 (88)
43 2ou2_A Histone acetyltransfera 52.0 16 0.00055 30.4 4.4 40 130-169 210-249 (280)
44 2dat_A Possible global transcr 51.4 8.5 0.00029 27.6 2.4 30 1-30 60-89 (123)
45 3f2g_A Alkylmercury lyase; MER 50.5 38 0.0013 27.0 6.3 50 118-168 23-73 (220)
46 3mn2_A Probable ARAC family tr 50.4 28 0.00095 23.5 4.9 39 121-159 6-46 (108)
47 2pq8_A Probable histone acetyl 50.0 12 0.00041 31.1 3.3 39 131-169 207-245 (278)
48 2krk_A 26S protease regulatory 49.4 17 0.00058 24.3 3.5 38 118-155 15-56 (86)
49 2jt1_A PEFI protein; solution 48.9 30 0.001 22.8 4.6 41 119-160 6-55 (77)
50 3oou_A LIN2118 protein; protei 48.8 30 0.001 23.4 4.9 40 121-160 9-50 (108)
51 3dkw_A DNR protein; CRP-FNR, H 48.5 81 0.0028 23.4 8.9 57 115-171 150-220 (227)
52 3oio_A Transcriptional regulat 46.5 26 0.00088 24.0 4.3 40 121-160 11-52 (113)
53 1uly_A Hypothetical protein PH 45.5 38 0.0013 26.0 5.5 51 108-160 11-64 (192)
54 2o3f_A Putative HTH-type trans 45.4 37 0.0013 23.7 5.0 28 132-159 39-66 (111)
55 1q1h_A TFE, transcription fact 44.1 16 0.00055 24.9 2.9 56 105-160 6-64 (110)
56 3mkl_A HTH-type transcriptiona 43.3 45 0.0016 22.9 5.2 42 119-160 9-51 (120)
57 3aji_B S6C, proteasome (prosom 42.9 29 0.00099 22.5 3.9 40 117-156 4-47 (83)
58 3chm_A COP9 signalosome comple 42.9 93 0.0032 23.5 7.2 118 43-169 27-154 (169)
59 1sfx_A Conserved hypothetical 42.5 66 0.0023 20.9 5.8 43 117-160 20-65 (109)
60 2hzt_A Putative HTH-type trans 42.1 39 0.0013 23.0 4.6 52 107-160 4-59 (107)
61 3f6v_A Possible transcriptiona 41.6 27 0.00093 25.7 3.9 50 109-160 50-102 (151)
62 2jsc_A Transcriptional regulat 41.5 18 0.00063 25.2 2.8 54 105-160 9-65 (118)
63 2kfs_A Conserved hypothetical 41.1 30 0.001 26.0 4.0 40 131-172 30-72 (148)
64 3gbg_A TCP pilus virulence reg 40.8 40 0.0014 26.5 5.1 40 121-160 173-213 (276)
65 2ouo_A HUNK1 protein, bromodom 40.6 11 0.00038 27.3 1.6 30 1-30 68-97 (130)
66 3iwz_A CAP-like, catabolite ac 40.5 1.1E+02 0.0038 22.7 7.8 37 133-169 188-227 (230)
67 1cv8_A Staphopain; cysteine pr 40.4 36 0.0012 26.2 4.5 59 102-161 22-82 (174)
68 1qbj_A Protein (double-strande 38.8 82 0.0028 20.7 6.0 46 115-161 8-59 (81)
69 1bl0_A Protein (multiple antib 38.6 47 0.0016 23.3 4.7 37 120-156 14-51 (129)
70 2p4w_A Transcriptional regulat 38.3 83 0.0028 24.3 6.5 53 106-160 4-59 (202)
71 4g26_A Pentatricopeptide repea 37.8 76 0.0026 27.8 6.9 55 6-65 112-166 (501)
72 2xev_A YBGF; tetratricopeptide 37.6 83 0.0028 20.4 6.8 88 7-98 10-99 (129)
73 3iwf_A Transcription regulator 37.4 47 0.0016 23.0 4.4 26 132-157 35-60 (107)
74 3la7_A Global nitrogen regulat 36.7 1.3E+02 0.0045 22.8 7.5 39 132-170 193-234 (243)
75 2d1h_A ST1889, 109AA long hypo 35.9 68 0.0023 20.9 5.0 41 121-161 25-68 (109)
76 2hr3_A Probable transcriptiona 34.3 87 0.003 21.6 5.6 42 119-160 37-81 (147)
77 2l48_A N-acetylmuramoyl-L-alan 33.8 62 0.0021 22.0 4.3 47 143-193 28-76 (85)
78 3e11_A Predicted zincin-like m 33.4 25 0.00084 25.1 2.4 20 135-158 95-114 (114)
79 1x5b_A Signal transducing adap 33.0 89 0.003 23.3 5.7 95 58-160 54-150 (163)
80 2dal_A Protein KIAA0794; FAS a 32.6 37 0.0013 21.3 2.9 29 135-163 19-47 (62)
81 1oyi_A Double-stranded RNA-bin 32.5 56 0.0019 21.9 3.9 46 117-164 17-65 (82)
82 1wj7_A Hypothetical protein (R 31.8 41 0.0014 23.8 3.2 28 135-162 43-70 (104)
83 3rkx_A Biotin-[acetyl-COA-carb 31.6 1.1E+02 0.0038 25.4 6.6 47 116-162 2-52 (323)
84 2dzl_A Protein FAM100B; UBA-li 31.1 38 0.0013 21.7 2.8 29 135-163 21-49 (66)
85 2oz6_A Virulence factor regula 31.1 1.5E+02 0.0052 21.5 7.0 38 132-169 164-204 (207)
86 3tqn_A Transcriptional regulat 31.0 97 0.0033 21.2 5.3 50 112-161 12-65 (113)
87 1z7u_A Hypothetical protein EF 30.6 56 0.0019 22.3 3.9 51 108-160 13-67 (112)
88 3ldz_A STAM-1, signal transduc 30.6 1.1E+02 0.0038 22.1 5.7 68 58-128 44-111 (140)
89 3dai_A ATPase family AAA domai 30.2 75 0.0026 22.6 4.7 30 1-30 51-80 (130)
90 2ozu_A Histone acetyltransfera 30.2 72 0.0025 26.5 5.0 31 130-160 212-242 (284)
91 2pjp_A Selenocysteine-specific 29.8 1.4E+02 0.0048 20.7 6.8 32 131-162 79-113 (121)
92 2y75_A HTH-type transcriptiona 29.7 1.4E+02 0.0048 20.6 7.9 41 121-161 13-58 (129)
93 2cg4_A Regulatory protein ASNC 29.5 76 0.0026 22.7 4.7 43 117-160 8-53 (152)
94 2fmy_A COOA, carbon monoxide o 29.5 1.7E+02 0.0058 21.6 8.0 30 132-161 167-199 (220)
95 2fi0_A Conserved domain protei 29.2 82 0.0028 20.6 4.4 31 131-161 48-78 (81)
96 2dbb_A Putative HTH-type trans 28.9 82 0.0028 22.4 4.8 44 116-160 8-54 (151)
97 2cfx_A HTH-type transcriptiona 28.5 84 0.0029 22.3 4.7 43 117-160 5-50 (144)
98 2cuj_A Transcriptional adaptor 27.7 1.4E+02 0.0048 20.9 5.6 30 131-160 74-106 (108)
99 1j9i_A GPNU1 DBD;, terminase s 27.5 35 0.0012 21.3 2.1 23 133-155 3-25 (68)
100 2gxg_A 146AA long hypothetical 27.4 1E+02 0.0035 21.2 5.0 39 120-160 40-81 (146)
101 2fbh_A Transcriptional regulat 27.4 1.2E+02 0.0039 20.8 5.3 40 121-160 41-83 (146)
102 1xn7_A Hypothetical protein YH 27.3 1.2E+02 0.0042 19.7 4.9 30 121-151 6-35 (78)
103 3d0s_A Transcriptional regulat 27.1 1.9E+02 0.0065 21.3 7.1 37 132-168 177-216 (227)
104 1jko_C HIN recombinase, DNA-in 26.9 74 0.0025 17.6 3.5 34 121-157 13-46 (52)
105 2aqe_A Transcriptional adaptor 26.8 97 0.0033 20.9 4.5 30 131-160 56-88 (90)
106 4ham_A LMO2241 protein; struct 26.6 1.7E+02 0.0057 20.6 6.0 52 110-161 15-70 (134)
107 2qvo_A Uncharacterized protein 26.4 1E+02 0.0035 20.1 4.6 30 133-162 31-63 (95)
108 2cyy_A Putative HTH-type trans 26.0 96 0.0033 22.1 4.7 42 117-159 7-51 (151)
109 4ev0_A Transcription regulator 26.0 1.9E+02 0.0066 21.0 8.3 54 116-169 140-203 (216)
110 3mv2_B Coatomer subunit epsilo 26.0 2.2E+02 0.0075 23.5 7.4 83 10-99 111-202 (310)
111 3qky_A Outer membrane assembly 25.8 1.4E+02 0.0047 22.4 5.8 89 7-99 23-121 (261)
112 2ek5_A Predicted transcription 25.8 1.2E+02 0.0041 21.4 5.1 50 112-161 7-60 (129)
113 2wpv_A GET4, UPF0363 protein Y 25.7 1.4E+02 0.0046 24.9 6.1 84 41-135 190-293 (312)
114 2zp2_A Kinase A inhibitor; KIP 25.6 54 0.0019 24.3 3.2 30 133-162 15-44 (141)
115 1g2h_A Transcriptional regulat 25.4 1.2E+02 0.0041 18.4 4.5 36 119-157 23-58 (61)
116 2fsw_A PG_0823 protein; alpha- 25.2 86 0.0029 21.1 4.1 53 106-160 14-70 (107)
117 1tc3_C Protein (TC3 transposas 25.2 88 0.003 16.9 5.1 34 118-154 10-43 (51)
118 3kp7_A Transcriptional regulat 24.5 1.4E+02 0.0046 20.8 5.2 38 121-160 42-82 (151)
119 1yyv_A Putative transcriptiona 24.4 1.3E+02 0.0045 21.2 5.1 53 106-160 24-80 (131)
120 2d9e_A Peregrin; four-helix bu 24.4 53 0.0018 23.2 2.8 30 1-30 48-77 (121)
121 1u8b_A ADA polyprotein; protei 24.4 1.1E+02 0.0038 21.3 4.7 35 120-155 82-116 (133)
122 1fse_A GERE; helix-turn-helix 24.3 1.2E+02 0.0042 18.2 5.1 18 130-147 24-41 (74)
123 3spa_A Mtrpol, DNA-directed RN 24.1 1.2E+02 0.004 30.1 6.0 153 6-167 134-317 (1134)
124 3deu_A Transcriptional regulat 23.9 99 0.0034 22.3 4.5 40 121-160 57-99 (166)
125 2dzn_B 26S protease regulatory 23.6 24 0.00081 23.0 0.8 37 119-155 3-43 (82)
126 1ku9_A Hypothetical protein MJ 23.6 1.3E+02 0.0043 20.6 4.8 42 120-161 29-73 (152)
127 2w25_A Probable transcriptiona 23.3 1.2E+02 0.0039 21.6 4.7 44 116-160 6-52 (150)
128 3e6c_C CPRK, cyclic nucleotide 23.3 90 0.0031 23.8 4.3 38 132-169 177-217 (250)
129 2lnb_A Z-DNA-binding protein 1 23.2 1.7E+02 0.0059 19.5 6.9 41 115-155 17-57 (80)
130 2oa4_A SIR5; structure, struct 23.2 1.7E+02 0.0058 20.3 5.2 35 121-155 39-73 (101)
131 3oop_A LIN2960 protein; protei 23.1 1.4E+02 0.0049 20.4 5.1 39 121-160 41-82 (143)
132 2i7k_A Bromodomain-containing 22.9 26 0.00088 24.9 0.9 30 1-30 49-78 (117)
133 3ryp_A Catabolite gene activat 22.9 2.2E+02 0.0075 20.6 7.2 37 132-168 167-206 (210)
134 1ify_A HHR23A, UV excision rep 22.9 72 0.0025 18.8 2.8 20 142-161 18-37 (49)
135 2ia0_A Putative HTH-type trans 22.7 1.2E+02 0.0039 22.5 4.7 45 115-160 15-62 (171)
136 2k02_A Ferrous iron transport 22.7 1.3E+02 0.0045 20.1 4.5 37 121-158 6-45 (87)
137 2l0k_A Stage III sporulation p 22.5 1.4E+02 0.0047 20.2 4.6 34 119-154 9-42 (93)
138 4b4t_P 26S proteasome regulato 22.5 3.4E+02 0.012 23.2 8.3 85 10-98 148-241 (445)
139 2dam_A ETEA protein; KIAA0887, 22.4 59 0.002 20.7 2.5 29 135-163 22-51 (67)
140 2pij_A Prophage PFL 6 CRO; tra 22.3 1.3E+02 0.0045 17.8 4.7 37 134-170 15-54 (67)
141 2zcw_A TTHA1359, transcription 21.9 2.3E+02 0.0079 20.5 7.1 52 117-168 118-185 (202)
142 2ao9_A Phage protein; structur 21.9 1.4E+02 0.0046 22.4 4.8 41 114-154 24-70 (155)
143 3neu_A LIN1836 protein; struct 21.8 1.6E+02 0.0055 20.5 5.1 52 110-161 14-69 (125)
144 3d7c_A General control of amin 21.8 26 0.00089 24.4 0.7 30 1-30 48-77 (112)
145 3hug_A RNA polymerase sigma fa 21.7 1.7E+02 0.0058 18.9 5.2 21 129-149 50-70 (92)
146 3bdd_A Regulatory protein MARR 21.5 1.9E+02 0.0066 19.5 5.5 39 121-160 35-76 (142)
147 1jr3_D DNA polymerase III, del 21.3 1.3E+02 0.0045 24.4 5.1 116 42-160 165-295 (343)
148 2xvc_A ESCRT-III, SSO0910; cel 21.3 1.6E+02 0.0055 18.4 4.4 35 120-154 13-47 (59)
149 2fa5_A Transcriptional regulat 21.2 1.8E+02 0.0063 20.3 5.4 40 121-161 53-95 (162)
150 2pv4_A Uncharacterized protein 21.1 1.4E+02 0.0046 22.1 4.5 23 49-71 44-66 (145)
151 1zyb_A Transcription regulator 21.0 2E+02 0.007 21.4 5.9 38 132-169 186-226 (232)
152 1je8_A Nitrate/nitrite respons 20.8 1.7E+02 0.0059 18.6 5.3 20 130-149 34-53 (82)
153 3ulq_B Transcriptional regulat 20.8 1.5E+02 0.0052 19.5 4.5 17 131-147 43-59 (90)
154 3fm5_A Transcriptional regulat 20.8 1.3E+02 0.0046 20.8 4.5 40 121-160 43-85 (150)
155 2fzt_A Hypothetical protein TM 20.8 72 0.0025 21.1 2.6 52 4-65 9-60 (79)
156 3fx3_A Cyclic nucleotide-bindi 20.6 2.2E+02 0.0076 21.1 6.1 35 133-168 179-216 (237)
157 3mb4_A Protein polybromo-1; PB 20.6 28 0.00097 24.7 0.7 30 1-30 62-91 (124)
158 3mkr_A Coatomer subunit epsilo 20.4 2.4E+02 0.0083 22.0 6.5 20 5-24 5-24 (291)
159 2e1c_A Putative HTH-type trans 20.4 1.4E+02 0.0047 22.1 4.7 44 115-159 25-71 (171)
160 2ff4_A Probable regulatory pro 20.4 2.2E+02 0.0076 23.8 6.5 75 6-89 178-257 (388)
161 3bpv_A Transcriptional regulat 20.3 2E+02 0.0068 19.4 5.3 40 121-161 33-75 (138)
162 3by6_A Predicted transcription 20.3 1.5E+02 0.0052 20.7 4.7 50 112-161 14-67 (126)
163 1pxv_A Cysteine protease; hydr 20.3 61 0.0021 25.1 2.6 40 121-161 52-91 (183)
164 2ccq_A P97, peptide N-glycanas 20.2 2E+02 0.0067 19.7 5.0 55 127-192 38-95 (99)
165 2p58_C Putative type III secre 20.2 2.1E+02 0.0071 20.3 5.1 38 74-112 39-76 (116)
166 3cqc_A Nuclear pore complex pr 20.2 52 0.0018 26.9 2.3 29 42-70 36-65 (270)
No 1
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=99.94 E-value=1.3e-26 Score=191.61 Aligned_cols=151 Identities=15% Similarity=0.193 Sum_probs=131.0
Q ss_pred HHHHHHHHHhhcCHHHHHHHHhcCChhhhhhcHHHHHHHHHHHHHHcCChHHHHHHhhCCCCcHHHHHHHHHHHHHHHHH
Q 029202 42 YVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKR 121 (197)
Q Consensus 42 y~~~Ll~~L~~ndl~~ar~l~kRiP~~~~~~~~~l~~~~~l~~~L~~~~y~~v~~~l~~~~ws~~~~~~i~~l~~~iR~~ 121 (197)
-+..|+..|.++..++|+.....||+++. .+++|+.+|.|+++||+|+|++||+++++ . ..+...|..|.++||++
T Consensus 66 i~~iLlk~L~~~p~~DF~~~l~LIp~~~~-~~~~I~~i~~L~~~L~~~~y~~fW~~l~~-~--~~l~~~i~gf~dsIR~~ 141 (226)
T 1rz4_A 66 TAQILLKALTNLPHTDFTLCKCMIDQAHQ-EERPIRQILYLGDLLETCHFQAFWQALDE-N--MDLLEGITGFEDSVRKF 141 (226)
T ss_dssp HHHHHHHHHHTTTSTHHHHHHHTSCHHHH-TSTTHHHHHHHHHHHHTTCHHHHHHHSCT-T--CHHHHTSTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCChhhh-cCHHHHHHHHHHHHHHcCCHHHHHHHHhc-C--hhHHHHHhHHHHHHHHH
Confidence 58889999999999999999999998886 68999999999999999999999999987 3 57889999999999999
Q ss_pred HHHHHHHhhcccCHHHHHHHcC-CCHHHHHHHHHhcCCeecCCCceEeecCCCCCCCCCC--ChHHHHHHHHHH--Hhhc
Q 029202 122 MFQLLLSAYSTISTQDTALFLG-MNEDDAAYYVQQQGWTLDPASRMLTVKKQPLVTEQKL--DPSKLQRLTEYV--FHLE 196 (197)
Q Consensus 122 i~~lis~AY~sIs~~~~a~~Lg-ls~~e~~~~~~~~GW~~d~~~~~~~P~~~~~~~~~~~--~~~qL~~LT~~v--~fLE 196 (197)
|+.|+++||++|+++++++||| ++++++.+|++++||++|++|.+ +|.++++.++++. +...++++++++ ++||
T Consensus 142 I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~~~GW~vd~~g~I-~~~n~e~~~k~~~~~E~i~~~~~~~~~~~~~~~ 220 (226)
T 1rz4_A 142 ICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWSADESGQI-FICSQEESIKPKNIVEKIDFDSVSSIMASSQLE 220 (226)
T ss_dssp HHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHHHHTCEECC--CE-ECCCHHHHTSCCCSSCCCCHHHHHHHHCC----
T ss_pred HHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHHHCCCEECCCccE-EeCCCcccccceeeeecccHHHHHHHHHHHHHh
Confidence 9999999999999999999995 78999999999999999877755 7777777777754 899999999998 5666
Q ss_pred C
Q 029202 197 H 197 (197)
Q Consensus 197 ~ 197 (197)
|
T Consensus 221 ~ 221 (226)
T 1rz4_A 221 H 221 (226)
T ss_dssp -
T ss_pred h
Confidence 4
No 2
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=99.93 E-value=1.2e-24 Score=180.09 Aligned_cols=127 Identities=15% Similarity=0.181 Sum_probs=117.3
Q ss_pred HHHHHHHHHhhcCHHHHHHHHhcCChh-hhhhcHHHHHHHHHHHHHHcCChHHHHHHhhCCCCcHHHHHHHHHHHHHHHH
Q 029202 42 YVIHLLGYYYVNDINSARFLWKSIPST-IKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTK 120 (197)
Q Consensus 42 y~~~Ll~~L~~ndl~~ar~l~kRiP~~-~~~~~~~l~~~~~l~~~L~~~~y~~v~~~l~~~~ws~~~~~~i~~l~~~iR~ 120 (197)
.+.+|+.+|++|++.++|.+++++|.+ ....||.|+.+++|.+++|+|+|.+||+.+++ .+++.+..+|+.|.+++|.
T Consensus 100 ~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~-~p~~~~~~~~~~l~~~vR~ 178 (229)
T 4b0z_A 100 TGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRS-CNFPEFSYFMKIVMSMVRN 178 (229)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHT-CCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhc-CccchHHHHHHHHHHHHHH
Confidence 788899999999999999999999865 34578999999999999999999999999999 6777889999999999999
Q ss_pred HHHHHHHHhhcccCHHHHHHHcCCC-HHHHHHHHHhcCCeecCCCceEeec
Q 029202 121 RMFQLLLSAYSTISTQDTALFLGMN-EDDAAYYVQQQGWTLDPASRMLTVK 170 (197)
Q Consensus 121 ~i~~lis~AY~sIs~~~~a~~Lgls-~~e~~~~~~~~GW~~d~~~~~~~P~ 170 (197)
++++||++||.+|++++++++|||+ ++|+.+|++++||+++ +|.+++|+
T Consensus 179 ~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~~gw~i~-dg~i~F~~ 228 (229)
T 4b0z_A 179 EIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEERGWDIR-DGVIYFPK 228 (229)
T ss_dssp HHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHHHTCEEE-TTEEECC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHcCCEEe-CCEEecCC
Confidence 9999999999999999999999996 8999999999999998 77777765
No 3
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=6.2e-23 Score=174.02 Aligned_cols=130 Identities=12% Similarity=0.186 Sum_probs=114.9
Q ss_pred HHHHHHHHHhhcCHHHHHHHHhcCChhhh--hhcHHHHHHHHHHHHHHcCChHHHHHHhhCC-CCcHHHHHHHHHHHHHH
Q 029202 42 YVIHLLGYYYVNDINSARFLWKSIPSTIK--DSRAEVVAAWKIGQHLWTRDYAGVYDAIRGF-DWSQEAQALVAAFSELY 118 (197)
Q Consensus 42 y~~~Ll~~L~~ndl~~ar~l~kRiP~~~~--~~~~~l~~~~~l~~~L~~~~y~~v~~~l~~~-~ws~~~~~~i~~l~~~i 118 (197)
.|.+|+.+|.+|+++++|.+++++|...+ ..||.|+++.+|.+++|+|+|.+||+..++. .+++.+..||+.|.+++
T Consensus 106 ~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff~l~~~~~~p~~~~~~f~d~l~~~i 185 (274)
T 4b4t_T 106 ISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKSAI 185 (274)
T ss_dssp HHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCCHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Confidence 78889999999999999999999996443 3589999999999999999999999988774 35788999999999999
Q ss_pred HHHHHHHHHHhhcccCHHHHHHHcCCC-HHHHHHHHHhcCCeecCCCceEeecCC
Q 029202 119 TKRMFQLLLSAYSTISTQDTALFLGMN-EDDAAYYVQQQGWTLDPASRMLTVKKQ 172 (197)
Q Consensus 119 R~~i~~lis~AY~sIs~~~~a~~Lgls-~~e~~~~~~~~GW~~d~~~~~~~P~~~ 172 (197)
|.+++.|+++||.+|++++++++|||+ ++|+.+|++++||+++ +|++++|...
T Consensus 186 R~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e~~~F~~~~gW~~~-~~~v~F~~~~ 239 (274)
T 4b4t_T 186 RDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERNWPIV-NSKVYFNNQS 239 (274)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHTCCSHHHHHHHHHHTTCCCC-SSCCCC----
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHhCCCCHHHHHHHHHHcCCEEe-CCEeEECCcc
Confidence 999999999999999999999999996 8999999999999998 4556665543
No 4
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=99.22 E-value=1.6e-10 Score=99.49 Aligned_cols=121 Identities=10% Similarity=-0.025 Sum_probs=101.4
Q ss_pred HHHHHHHHHhhcCHHHHHHHHhcCChhhhhhcHHHHHHHHHHHHHH---------------cCChHHHHHHhhCCCCcHH
Q 029202 42 YVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLW---------------TRDYAGVYDAIRGFDWSQE 106 (197)
Q Consensus 42 y~~~Ll~~L~~ndl~~ar~l~kRiP~~~~~~~~~l~~~~~l~~~L~---------------~~~y~~v~~~l~~~~ws~~ 106 (197)
.+-+|+.+|...| +.....++|.++++ +|.++....+.+++. .|+|.+||..+++..-+-.
T Consensus 119 ~aY~lL~~l~~~~---~~~~l~~Lp~~i~~-~p~Vq~AL~l~~a~~~~~~~e~~~~~~~~~~gNY~rFFrL~~~~~~pyL 194 (316)
T 3t5v_A 119 RAYALLSKIRDPQ---YDENIQRLPKHIFQ-DKLVQMALCFRRVISNSAYTERGFVKTENCLNFYARFFQLMQSPSLPLL 194 (316)
T ss_dssp HHHHHHHSTTCTH---HHHHHTTSCHHHHT-SHHHHHHHHHHHHHCCTTCCCTTCCCCSSCCCCHHHHHHHHTCTTSCHH
T ss_pred HHHHHHHHhccch---HHHHHHhCCHHHhc-CHHHHHHHHHHHHHHhcccccccccccccccchHHHHHHHHhccCCChH
Confidence 6767777776654 44577889999995 699999999999875 3899999999987223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc----ccCHHHHHHHcCCC-HHHHHHHHHhcCCeecCCCce
Q 029202 107 AQALVAAFSELYTKRMFQLLLSAYS----TISTQDTALFLGMN-EDDAAYYVQQQGWTLDPASRM 166 (197)
Q Consensus 107 ~~~~i~~l~~~iR~~i~~lis~AY~----sIs~~~~a~~Lgls-~~e~~~~~~~~GW~~d~~~~~ 166 (197)
...+++.+...+|.++++++.+||. +++++.++++|||+ ++|+.+||+..||+++.++++
T Consensus 195 ~aclle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~~~~gl~~~~~~~~ 259 (316)
T 3t5v_A 195 MGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCNYYSIEIINGDAA 259 (316)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHHHHTTCCEETTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHHHHCCCeEeCCCCc
Confidence 5788999999999999999999994 89999999999996 899999999999999864433
No 5
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.95 E-value=0.00016 Score=63.74 Aligned_cols=120 Identities=16% Similarity=0.185 Sum_probs=81.8
Q ss_pred hcHHHHHHHHHHHHHHcCChHHHHHHhhCCC--C--cHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHcCCCHH
Q 029202 72 SRAEVVAAWKIGQHLWTRDYAGVYDAIRGFD--W--SQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNED 147 (197)
Q Consensus 72 ~~~~l~~~~~l~~~L~~~~y~~v~~~l~~~~--w--s~~~~~~i~~l~~~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~ 147 (197)
.+|++..+..+.++...|++..|...+..+. . .+.+..-+..|...+|++.+.-+...|++|+++++|+.||++++
T Consensus 252 ~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls~~ 331 (394)
T 3txn_A 252 SGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMP 331 (394)
T ss_dssp CSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCCHH
T ss_pred CCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcCHH
Confidence 4699999999999999999999888777532 1 23456678899999999999999999999999999999999988
Q ss_pred HHHHHHHh-------cCCeecCCCceEeecCCCCCCCCCC-ChHHHHHHHHHH
Q 029202 148 DAAYYVQQ-------QGWTLDPASRMLTVKKQPLVTEQKL-DPSKLQRLTEYV 192 (197)
Q Consensus 148 e~~~~~~~-------~GW~~d~~~~~~~P~~~~~~~~~~~-~~~qL~~LT~~v 192 (197)
++...+.+ .| ++|...+++....++.....-. ..+.+++++..|
T Consensus 332 evE~~L~~lI~dg~I~a-~IDq~~giv~~~~~~~r~~~y~~ale~l~~ls~vV 383 (394)
T 3txn_A 332 QVEKKLSQMILDKKFSG-ILDQGEGVLIVFEETPVDKTYERVLETIQSMGKVV 383 (394)
T ss_dssp HHHHHHHHHHHTTSSCE-EEETTTTEEEECCC---------------------
T ss_pred HHHHHHHHHHHCCCeeE-EEcCCCCEEEECCCcchhhHHHHHHHHHHHHHHHH
Confidence 77666443 25 8888777877665543221111 444556666655
No 6
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.00059 Score=60.30 Aligned_cols=104 Identities=13% Similarity=0.192 Sum_probs=78.3
Q ss_pred hhcHHHHHHHHHHHHHHcCChHHHHHHhhC---CCC--cHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHcCCC
Q 029202 71 DSRAEVVAAWKIGQHLWTRDYAGVYDAIRG---FDW--SQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMN 145 (197)
Q Consensus 71 ~~~~~l~~~~~l~~~L~~~~y~~v~~~l~~---~~w--s~~~~~~i~~l~~~iR~~i~~lis~AY~sIs~~~~a~~Lgls 145 (197)
..+|.++.+..+..+++.++|..++..+.. ... ...+.+-+..|...+|++.+.-+.+.|++|+++.+|+.||++
T Consensus 281 ~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s 360 (429)
T 4b4t_R 281 STTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVS 360 (429)
T ss_dssp GSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSC
T ss_pred cCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcC
Confidence 456889988999999999999999876422 111 123455577889999999999999999999999999999999
Q ss_pred HHHHHHH----HHh--cCCeecCCCceEeecCCCC
Q 029202 146 EDDAAYY----VQQ--QGWTLDPASRMLTVKKQPL 174 (197)
Q Consensus 146 ~~e~~~~----~~~--~GW~~d~~~~~~~P~~~~~ 174 (197)
++++.+. +.+ ..=++|.-.+++....|++
T Consensus 361 ~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~d~ 395 (429)
T 4b4t_R 361 VAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDN 395 (429)
T ss_dssp HHHHHHHHHHHHHHTSSCEEEETTTTEEEECC---
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCCCc
Confidence 8766554 443 2447887777887666554
No 7
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=96.75 E-value=0.0012 Score=45.76 Aligned_cols=61 Identities=10% Similarity=0.140 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHHHHHHHh-----c-CCeecCCCceEeecCCC
Q 029202 113 AFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQ-----Q-GWTLDPASRMLTVKKQP 173 (197)
Q Consensus 113 ~l~~~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~~~~~-----~-GW~~d~~~~~~~P~~~~ 173 (197)
.|.+++.+.-++.+++-|++|+++.+|++||++++++.+++.+ + -=++|...+++...+++
T Consensus 11 ~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e 77 (84)
T 1ufm_A 11 ILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETRE 77 (84)
T ss_dssp CCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSS
T ss_pred HHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCcc
Confidence 3567778888888999999999999999999999888777543 1 23677666677765543
No 8
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.069 Score=44.89 Aligned_cols=122 Identities=11% Similarity=0.097 Sum_probs=73.5
Q ss_pred hcHHHHHHHHHHHHHHcCChHHHHHHhhCC----CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHcCCCHH
Q 029202 72 SRAEVVAAWKIGQHLWTRDYAGVYDAIRGF----DWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNED 147 (197)
Q Consensus 72 ~~~~l~~~~~l~~~L~~~~y~~v~~~l~~~----~ws~~~~~~i~~l~~~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~ 147 (197)
.++.+.....+......+++..+-..+... .-.+.....+..+...+|+..+.-+.+.|++|+++++|+.||++++
T Consensus 292 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~~~ 371 (434)
T 4b4t_Q 292 QSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQ 371 (434)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCCHH
T ss_pred cchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcCHH
Confidence 457777778888889888888776665542 1224556778889999999999999999999999999999999988
Q ss_pred HHHHHHHh-----c-CCeecCCCceEeecCCCCCCCCCC-ChHHHHHHHHHHH
Q 029202 148 DAAYYVQQ-----Q-GWTLDPASRMLTVKKQPLVTEQKL-DPSKLQRLTEYVF 193 (197)
Q Consensus 148 e~~~~~~~-----~-GW~~d~~~~~~~P~~~~~~~~~~~-~~~qL~~LT~~v~ 193 (197)
++...+.+ . -=++|...+++....+......-. .-+.+++|+++|.
T Consensus 372 ~~E~~l~~lI~~~~i~a~id~~~g~v~~~~~~~~~~~~~~~l~~~~~l~~~vd 424 (434)
T 4b4t_Q 372 QVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQDATYDSALELVGQLNKVVD 424 (434)
T ss_dssp HHHHHHHHHHHHTSSCCEEETTTTEEECC------------------------
T ss_pred HHHHHHHHHHhCCCcceecccccCeEeeCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 87766543 1 224554444544332221111111 3345666666663
No 9
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.031 Score=49.54 Aligned_cols=98 Identities=9% Similarity=0.146 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHcCCh---HHHHHHhhCCCCc--------HHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHc
Q 029202 74 AEVVAAWKIGQHLWTRDY---AGVYDAIRGFDWS--------QEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFL 142 (197)
Q Consensus 74 ~~l~~~~~l~~~L~~~~y---~~v~~~l~~~~ws--------~~~~~~i~~l~~~iR~~i~~lis~AY~sIs~~~~a~~L 142 (197)
+.+...-.|.+....++. +.+...... ... +....-+..|..++++.-+.-+++-|++|+++++|..|
T Consensus 291 ~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~-~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL 369 (445)
T 4b4t_P 291 KKLESQESLVKLFTTNELMRWPIVQKTYEP-VLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELL 369 (445)
T ss_dssp HHHHHHHHHHHHHHHCCSSSHHHHHHHTCS-STTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHH
T ss_pred cccHHHHHHHHHHHhchHhhhHHHHHHHHH-HhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHh
Confidence 455555567777777654 555444433 111 11134567899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHh-------cCCeecCCCceEeecCCC
Q 029202 143 GMNEDDAAYYVQQ-------QGWTLDPASRMLTVKKQP 173 (197)
Q Consensus 143 gls~~e~~~~~~~-------~GW~~d~~~~~~~P~~~~ 173 (197)
|++++++..++.+ .| ++|.-.++|.+..+.
T Consensus 370 ~l~~~evE~~ls~mI~~g~i~a-kIDq~~giV~F~~~~ 406 (445)
T 4b4t_P 370 DLTESQTETYISDLVNQGIIYA-KVNRPAKIVNFEKPK 406 (445)
T ss_dssp TSCHHHHHHHHHHHHHHTSSCC-EEETTTTEEEC----
T ss_pred CcCHHHHHHHHHHHHHCCCEEE-EEcCCCCEEEECCCC
Confidence 9999888777543 25 777656677765543
No 10
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.41 E-value=0.077 Score=46.26 Aligned_cols=97 Identities=10% Similarity=0.081 Sum_probs=65.2
Q ss_pred hcHHHHHHHHHHHHHHcCChHHHHHHhhCC-CCcHHHHHHHHHHHHHHHHHHHHHHH--HhhcccCHHHHHHHcCCCHHH
Q 029202 72 SRAEVVAAWKIGQHLWTRDYAGVYDAIRGF-DWSQEAQALVAAFSELYTKRMFQLLL--SAYSTISTQDTALFLGMNEDD 148 (197)
Q Consensus 72 ~~~~l~~~~~l~~~L~~~~y~~v~~~l~~~-~ws~~~~~~i~~l~~~iR~~i~~lis--~AY~sIs~~~~a~~Lgls~~e 148 (197)
.+|+...+..+.+..-.|++..+-..++.+ ...+.+..-...+..++|-..+..+. +.|++|+.+.+++.||++.+|
T Consensus 244 ~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~~ia~~l~i~~~e 323 (393)
T 4b4t_O 244 NDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDISKATHLPKDN 323 (393)
T ss_dssp SSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHHHHHHHHTCCHHH
T ss_pred cCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHHHHHHHhCcCHHH
Confidence 457788888999999999999987655431 11133444444555555544433222 457899999999999999988
Q ss_pred HHHHHHh-------cCCeecCCCceEee
Q 029202 149 AAYYVQQ-------QGWTLDPASRMLTV 169 (197)
Q Consensus 149 ~~~~~~~-------~GW~~d~~~~~~~P 169 (197)
+..++.+ .| ++|.-.+++..
T Consensus 324 vE~lli~aI~~glI~G-kIDQv~~~v~v 350 (393)
T 4b4t_O 324 VEHLVMRAISLGLLKG-SIDQVNELVTI 350 (393)
T ss_dssp HHHHHHHHHHHSCSSS-CEETTTTEECC
T ss_pred HHHHHHHHHHcCCEEE-EEcCCCCEEEE
Confidence 8777543 25 56765556544
No 11
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.61 E-value=0.025 Score=51.46 Aligned_cols=95 Identities=14% Similarity=0.249 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHhhCCC--C-cHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHcCCC-HHHHHH
Q 029202 76 VVAAWKIGQHLWTRDYAGVYDAIRGFD--W-SQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMN-EDDAAY 151 (197)
Q Consensus 76 l~~~~~l~~~L~~~~y~~v~~~l~~~~--w-s~~~~~~i~~l~~~iR~~i~~lis~AY~sIs~~~~a~~Lgls-~~e~~~ 151 (197)
+..=..|.+++..||..+|-..++.+. | .+....+|..++..+.+.-++.++++|++||+.++|..||++ ++++..
T Consensus 342 L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~ 421 (523)
T 4b4t_S 342 LLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEY 421 (523)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHH
Confidence 444457888999999999888886532 2 123346888999999999999999999999999999999996 344444
Q ss_pred HHH----hc--CCeecCCCceEeec
Q 029202 152 YVQ----QQ--GWTLDPASRMLTVK 170 (197)
Q Consensus 152 ~~~----~~--GW~~d~~~~~~~P~ 170 (197)
++. +- -=++|...+++..+
T Consensus 422 iVAkmI~dG~I~A~Idh~~g~v~sk 446 (523)
T 4b4t_S 422 MVSRAIRDGVIEAKINHEDGFIETT 446 (523)
T ss_dssp HHHHHHHHTSSCCEECTTTCCEECC
T ss_pred HHHHHHHcCCceEEEecCCCEEEeC
Confidence 433 21 11455555565554
No 12
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=93.39 E-value=0.17 Score=40.16 Aligned_cols=88 Identities=11% Similarity=0.126 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCChHHHHHHhhCCCCcHHHHHHHH----HHHHHHHHHHHH----HHHH--hhcccCHHHHHHHcCC----
Q 029202 79 AWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVA----AFSELYTKRMFQ----LLLS--AYSTISTQDTALFLGM---- 144 (197)
Q Consensus 79 ~~~l~~~L~~~~y~~v~~~l~~~~ws~~~~~~i~----~l~~~iR~~i~~----lis~--AY~sIs~~~~a~~Lgl---- 144 (197)
-..|.+++..||..+|-.+++.+. ..|+. .+.++.|.-+.+ -+.. .|+.|++++++.-|.+
T Consensus 83 y~~L~~Avr~Gdl~~f~~~l~~~~-----~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~ 157 (203)
T 3t5x_A 83 FAEVTRAVSEGNLLLLHEALAKHE-----AFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVE 157 (203)
T ss_dssp GHHHHHHHHHTCHHHHHHHHHHTH-----HHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhH-----HHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCC
Confidence 347888999999999999998632 12222 134455553333 2222 6999999999999964
Q ss_pred --CHHHHHHHHHh-------cCCeecCCCceEeecCC
Q 029202 145 --NEDDAAYYVQQ-------QGWTLDPASRMLTVKKQ 172 (197)
Q Consensus 145 --s~~e~~~~~~~-------~GW~~d~~~~~~~P~~~ 172 (197)
+.+|+.-.+.+ +| .+|...++++-.+.
T Consensus 158 ~~~~~evE~ila~lI~~G~Ikg-~I~~~~~~lVlsk~ 193 (203)
T 3t5x_A 158 DVDIDEVQCILANLIYMGHVKG-YISHQHQKLVVSKQ 193 (203)
T ss_dssp TCCHHHHHHHHHHHHHHTSSCE-EEETTTTEEEECSS
T ss_pred CCCHHHHHHHHHHHHHcCceEE-EEcccccEEEECCC
Confidence 67777666443 36 45555555444443
No 13
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=84.55 E-value=2.1 Score=27.47 Aligned_cols=44 Identities=5% Similarity=0.021 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHHHHH---HHhcCCee
Q 029202 117 LYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 160 (197)
Q Consensus 117 ~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 160 (197)
..|++|+.++...=..++..++|..||++...+.+. .++.|+-.
T Consensus 10 ~~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 10 NLEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp HHHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEe
Confidence 358899999987445699999999999997666555 44569944
No 14
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=83.54 E-value=0.24 Score=30.09 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=27.1
Q ss_pred HHHHHHHcCCCH-HHHHHHHHhcCCeecCCCceEee
Q 029202 135 TQDTALFLGMNE-DDAAYYVQQQGWTLDPASRMLTV 169 (197)
Q Consensus 135 ~~~~a~~Lgls~-~e~~~~~~~~GW~~d~~~~~~~P 169 (197)
+.+++++.|.++ +++..+..+.+|-++..-.-++|
T Consensus 9 ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~~ 44 (45)
T 3e21_A 9 LADFQACTGIENIDEAITLLEQNNWDLVAAINGVIP 44 (45)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC--
T ss_pred HHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHcC
Confidence 567889999995 99999999999998754444444
No 15
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=80.18 E-value=2.5 Score=37.66 Aligned_cols=88 Identities=8% Similarity=0.062 Sum_probs=55.6
Q ss_pred HHHHHHhcCChhhhhhc---HHHHH-HHHHHHHHHcCChHHHHHHhhCCC-C--cHHH-HHHHHHHHHHHHHHHHHH---
Q 029202 57 SARFLWKSIPSTIKDSR---AEVVA-AWKIGQHLWTRDYAGVYDAIRGFD-W--SQEA-QALVAAFSELYTKRMFQL--- 125 (197)
Q Consensus 57 ~ar~l~kRiP~~~~~~~---~~l~~-~~~l~~~L~~~~y~~v~~~l~~~~-w--s~~~-~~~i~~l~~~iR~~i~~l--- 125 (197)
-++.+..++|..-.-.. +.|.. -..|.+++..||..+|-.+++.+. | ...+ -.++..++..+=+..++-
T Consensus 273 pv~LLlG~~P~~~ll~k~~~~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~ 352 (455)
T 3t5v_B 273 PTGLILGKMVKWGPLRPFLSQETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIK 352 (455)
T ss_dssp HHHHHTTCCBCHHHHGGGSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666665433222 66776 557999999999999999998632 0 1112 344444444433333332
Q ss_pred -HHHhh--cccCHHHHHHHcCC
Q 029202 126 -LLSAY--STISTQDTALFLGM 144 (197)
Q Consensus 126 -is~AY--~sIs~~~~a~~Lgl 144 (197)
....| +.|++++++.-|.+
T Consensus 353 ~~~~~~~~srI~l~~i~~aL~~ 374 (455)
T 3t5v_B 353 SWTTEWGQNKLPYSLIERVLQL 374 (455)
T ss_dssp HHTTTTCCCEEEHHHHHHHHHH
T ss_pred HHHhcCCCCeeeHHHHHHHHhh
Confidence 35558 89999999998874
No 16
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=77.02 E-value=3.7 Score=26.91 Aligned_cols=39 Identities=10% Similarity=0.384 Sum_probs=29.6
Q ss_pred ccCHHHHHHHcCCCHHHHHHHHHh---cCCeecCCCceEeec
Q 029202 132 TISTQDTALFLGMNEDDAAYYVQQ---QGWTLDPASRMLTVK 170 (197)
Q Consensus 132 sIs~~~~a~~Lgls~~e~~~~~~~---~GW~~d~~~~~~~P~ 170 (197)
.++++.+|.|||++..-+.+.+.+ .+|.+--.+...+.+
T Consensus 16 ~LTi~EaAeylgIg~~~l~~L~~~~~~~~~~~~iG~~~lI~r 57 (70)
T 1y6u_A 16 TLTIEEASKYFRIGENKLRRLAEENKNANWLIMNGNRIQIKR 57 (70)
T ss_dssp EEEHHHHHHHTCSCHHHHHHHHHHCTTCSSEEEETTEEEEES
T ss_pred eeCHHHHHHHHCcCHHHHHHHHHcCCCCCcEEEeCCEEEEEH
Confidence 467899999999999999999987 478764334444443
No 17
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=75.74 E-value=6.8 Score=26.81 Aligned_cols=54 Identities=19% Similarity=0.111 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHH---HHHHHhcCCee
Q 029202 105 QEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDA---AYYVQQQGWTL 160 (197)
Q Consensus 105 ~~~~~~i~~l~~~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~---~~~~~~~GW~~ 160 (197)
+.+..+...+.+..|.+|+.++ .-..++..+++..+|++..-+ .+...+.||-.
T Consensus 9 ~~~~~~~~~l~~~~r~~IL~~L--~~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~ 65 (114)
T 2oqg_A 9 AELASVFAALSDETRWEILTEL--GRADQSASSLATRLPVSRQAIAKHLNALQACGLVE 65 (114)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH--HHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCChHHHHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCee
Confidence 3455667777778899999998 346799999999999997554 44455679975
No 18
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=74.61 E-value=18 Score=25.46 Aligned_cols=56 Identities=16% Similarity=0.155 Sum_probs=44.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHHHHH---HHhcCCee
Q 029202 104 SQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 160 (197)
Q Consensus 104 s~~~~~~i~~l~~~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 160 (197)
.+.+..+...|.+..|.+|+.++.. ...++..++|..||++..-+-.. ..+.|+-.
T Consensus 29 ~~~~~~~~~al~~~~rl~IL~~L~~-~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~ 87 (122)
T 1u2w_A 29 ISGVSQILKAIADENRAKITYALCQ-DEELCVCDIANILGVTIANASHHLRTLYKQGVVN 87 (122)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHHH-SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 4667778888889999999999974 46799999999999997555444 44578876
No 19
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=74.04 E-value=7.8 Score=26.58 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHH---HHHHHhcCCee
Q 029202 106 EAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDA---AYYVQQQGWTL 160 (197)
Q Consensus 106 ~~~~~i~~l~~~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~---~~~~~~~GW~~ 160 (197)
.+..+...+.+..|.+|+.++. -..+++.++|..+|++..-+ .+...+.|+-.
T Consensus 15 ~~~~~~~~l~~~~r~~IL~~L~--~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~ 70 (106)
T 1r1u_A 15 RVTEIFKALGDYNRIRIMELLS--VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVK 70 (106)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 4555666777888999999987 46789999999999997554 44445678875
No 20
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=73.73 E-value=9.6 Score=25.53 Aligned_cols=56 Identities=7% Similarity=0.027 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHH---HHHHHhcCCeecCCC
Q 029202 106 EAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDA---AYYVQQQGWTLDPAS 164 (197)
Q Consensus 106 ~~~~~i~~l~~~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~---~~~~~~~GW~~d~~~ 164 (197)
.+..+...+.+..|.+|+.++ -..++..+++..+|++..-+ .+...+.|+-....|
T Consensus 20 ~~~~~~~~l~~~~r~~Il~~L---~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~g 78 (96)
T 1y0u_A 20 YHKRYNYAVTNPVRRKILRML---DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVGE 78 (96)
T ss_dssp HHHHHHHHHSCHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHhCCHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEECC
Confidence 344566677778899999999 36699999999999997544 444556798764333
No 21
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=72.99 E-value=8.9 Score=26.63 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHH---HHHHHhcCCee
Q 029202 106 EAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDA---AYYVQQQGWTL 160 (197)
Q Consensus 106 ~~~~~i~~l~~~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~---~~~~~~~GW~~ 160 (197)
.+..+...+.+..|-+++.++.. ..+++.++|..||++..-+ ++-..+.|+..
T Consensus 21 ~~~~~~~~l~~~~~~~il~~L~~--~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~ 76 (119)
T 2lkp_A 21 QVASTLQALATPSRLMILTQLRN--GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVV 76 (119)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHH--CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 44556666677778899999887 6899999999999996444 44444579975
No 22
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=72.19 E-value=7.1 Score=25.87 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHH---HHHHHhcCCee
Q 029202 105 QEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDA---AYYVQQQGWTL 160 (197)
Q Consensus 105 ~~~~~~i~~l~~~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~---~~~~~~~GW~~ 160 (197)
+....+...+.+..|.+|+..+.. -..++..+++..+|++..-+ .+-..+.||-.
T Consensus 12 ~~~~~~~~~l~~~~~~~il~~l~~-~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~ 69 (99)
T 3cuo_A 12 EQAAALLKAMSHPKRLLILCMLSG-SPGTSAGELTRITGLSASATSQHLARMRDEGLID 69 (99)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHTT-CCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCChHHHHHHHHHHh-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 455666677777889999998854 44799999999999997554 44455678875
No 23
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=71.29 E-value=9.2 Score=25.84 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHH---HHHHHhcCCee
Q 029202 105 QEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDA---AYYVQQQGWTL 160 (197)
Q Consensus 105 ~~~~~~i~~l~~~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~---~~~~~~~GW~~ 160 (197)
+.+..+...+.+..|.+|+..+.. ...+..+++..+|++..-+ .+...+.|+-.
T Consensus 11 ~~~~~~~~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~ 67 (102)
T 3pqk_A 11 NEVANLLKTLSHPVRLMLVCTLVE--GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVE 67 (102)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHT--CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 456677788888999999999965 6799999999999986444 44455679875
No 24
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=70.84 E-value=8.3 Score=27.02 Aligned_cols=54 Identities=11% Similarity=0.242 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHH---HHHHHhcCCee
Q 029202 105 QEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDA---AYYVQQQGWTL 160 (197)
Q Consensus 105 ~~~~~~i~~l~~~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~---~~~~~~~GW~~ 160 (197)
+.+..+...|.+..|.+|+.++.. ..+++.++|..||++..-+ .+...+.|+-.
T Consensus 6 ~~~~~~~~al~~~~R~~Il~~L~~--~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~ 62 (118)
T 3f6o_A 6 EQLNGIFQALADPTRRAVLGRLSR--GPATVSELAKPFDMALPSFMKHIHFLEDSGWIR 62 (118)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHT--CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHh--CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeE
Confidence 567778888999999999999984 7889999999999997554 44455678875
No 25
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=69.96 E-value=9.2 Score=27.20 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHH---HHHHHhcCCee
Q 029202 106 EAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDA---AYYVQQQGWTL 160 (197)
Q Consensus 106 ~~~~~i~~l~~~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~---~~~~~~~GW~~ 160 (197)
.+..+...+.+..|.+|+..+.. ...++.++|..||++..-+ .+...+.|+..
T Consensus 35 ~~~~~~kaL~~~~rl~IL~~L~~--~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~ 90 (122)
T 1r1t_A 35 SLAEFFAVLADPNRLRLLSLLAR--SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVS 90 (122)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 45666677777889999999864 5789999999999997554 44455579876
No 26
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=69.32 E-value=6.1 Score=26.53 Aligned_cols=54 Identities=13% Similarity=0.240 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHHHH---HHHhcCCee
Q 029202 105 QEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAY---YVQQQGWTL 160 (197)
Q Consensus 105 ~~~~~~i~~l~~~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~---~~~~~GW~~ 160 (197)
+.+..++..+.+..|.+|+..+.. ...+..+++..+|++..-+-. ...+.|+-.
T Consensus 11 ~~~~~~~~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~ 67 (98)
T 3jth_A 11 AKAVVLLKAMANERRLQILCMLHN--QELSVGELCAKLQLSQSALSQHLAWLRRDGLVT 67 (98)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHTTT--SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 356667777888899999999976 789999999999999755444 345578875
No 27
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=67.83 E-value=2.7 Score=29.95 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhhcccCHHHHHHHcCC---CHHH
Q 029202 116 ELYTKRMFQLLLSAYSTISTQDTALFLGM---NEDD 148 (197)
Q Consensus 116 ~~iR~~i~~lis~AY~sIs~~~~a~~Lgl---s~~e 148 (197)
.++|++|+.++.. .-+++.+++..||+ ++.+
T Consensus 10 ~T~Re~Ii~lL~~--~plta~ei~~~l~i~~~~~ke 43 (105)
T 2gmg_A 10 ATRREKIIELLLE--GDYSPSELARILDMRGKGSKK 43 (105)
T ss_dssp HHHHHHHHHHTTT--SCBCTTHHHHSSCCCSSCCHH
T ss_pred ccHHHHHHHHHHc--CCCCHHHHHHHhCCCCCChHH
Confidence 5789999999983 88999999999999 6555
No 28
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=67.03 E-value=8.2 Score=25.12 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhcccCHHHHHHHcCCCHHHHHH---HHHhcCCee
Q 029202 119 TKRMFQLLLSAYSTISTQDTALFLGMNEDDAAY---YVQQQGWTL 160 (197)
Q Consensus 119 R~~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~---~~~~~GW~~ 160 (197)
|++|+.++... ..++..++|..+|++..-+.. ...+.|+-.
T Consensus 2 r~~Il~~L~~~-~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~ 45 (81)
T 2htj_A 2 KNEILEFLNRH-NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQ 45 (81)
T ss_dssp HHHHHHHHHHS-CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 67888888754 679999999999999755444 445678876
No 29
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=66.43 E-value=5.2 Score=27.74 Aligned_cols=53 Identities=17% Similarity=0.163 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHHHHH---HHhcCCee
Q 029202 106 EAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 160 (197)
Q Consensus 106 ~~~~~i~~l~~~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 160 (197)
.+..+...+.+..|.+|+.++.. ..+++.+++..+|++..-+-.. ..+.|+-.
T Consensus 14 ~~~~~~~al~~~~r~~IL~~L~~--~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~ 69 (108)
T 2kko_A 14 QVARVGKALANGRRLQILDLLAQ--GERAVEAIATATGMNLTTASANLQALKSGGLVE 69 (108)
T ss_dssp HHHHHHHHHTTSTTHHHHHHHTT--CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 45666777778889999998864 7899999999999997655444 45578875
No 30
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=65.02 E-value=6.8 Score=28.03 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=18.3
Q ss_pred CHHHHHHHHHhcCCeecCCCceEeecC
Q 029202 145 NEDDAAYYVQQQGWTLDPASRMLTVKK 171 (197)
Q Consensus 145 s~~e~~~~~~~~GW~~d~~~~~~~P~~ 171 (197)
+.++++.||+++||.+. +.-|+.
T Consensus 68 skE~AiayAek~G~~y~----V~ep~~ 90 (108)
T 2lju_A 68 TRELAIAYAVAHKIDYT----VLQDNP 90 (108)
T ss_dssp SHHHHHHHHHHTTCEEE----EECSSC
T ss_pred CHHHHHHHHHHcCCEEE----EecCCc
Confidence 47999999999999994 444544
No 31
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=63.94 E-value=4.3 Score=23.82 Aligned_cols=27 Identities=7% Similarity=0.003 Sum_probs=23.9
Q ss_pred ccCHHHHHHHcCCCHHHHHHHHHhcCC
Q 029202 132 TISTQDTALFLGMNEDDAAYYVQQQGW 158 (197)
Q Consensus 132 sIs~~~~a~~Lgls~~e~~~~~~~~GW 158 (197)
.+.+.++|.-||++.+++.++..+.|=
T Consensus 2 k~rv~~lAkel~~~~k~l~~~l~~~g~ 28 (49)
T 1nd9_A 2 DVTIKTLAAERQTSVERLVQQFADAGI 28 (49)
T ss_dssp EECTTHHHHHHSSSHHHHHHHHHHHTS
T ss_pred cccHHHHHHHHCcCHHHHHHHHHHcCC
Confidence 367889999999999999999998874
No 32
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=63.22 E-value=28 Score=22.70 Aligned_cols=48 Identities=8% Similarity=0.108 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHH---HHHHHhcCCee
Q 029202 112 AAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDA---AYYVQQQGWTL 160 (197)
Q Consensus 112 ~~l~~~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~---~~~~~~~GW~~ 160 (197)
..+.+..|-+|+..+.. ...++..++|..+|++..-+ .+-..+.||-.
T Consensus 11 ~~l~~~~~~~iL~~L~~-~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~ 61 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLP-RRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVK 61 (100)
T ss_dssp HHHHSHHHHHHHHHHHH-HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred cccCChHHHHHHHHHHh-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 46678889999998864 46799999999999997554 44455679976
No 33
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=61.97 E-value=18 Score=24.26 Aligned_cols=41 Identities=7% Similarity=0.151 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhc--ccCHHHHHHHcCCCHHHHHHHHHhc-CCe
Q 029202 119 TKRMFQLLLSAYS--TISTQDTALFLGMNEDDAAYYVQQQ-GWT 159 (197)
Q Consensus 119 R~~i~~lis~AY~--sIs~~~~a~~Lgls~~e~~~~~~~~-GW~ 159 (197)
-+++...|...|. .++++++|..+|+|+..+....++. |=+
T Consensus 4 ~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~g~s 47 (103)
T 3lsg_A 4 KELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNFGIP 47 (103)
T ss_dssp HHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 3466667777775 6999999999999998877666654 544
No 34
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=61.95 E-value=3.2 Score=26.58 Aligned_cols=17 Identities=18% Similarity=0.773 Sum_probs=14.7
Q ss_pred CHHHHHHHHHhcCCeec
Q 029202 145 NEDDAAYYVQQQGWTLD 161 (197)
Q Consensus 145 s~~e~~~~~~~~GW~~d 161 (197)
+.+|+++||+++||-+-
T Consensus 30 ds~eV~~YC~~kGwIiP 46 (60)
T 1ng7_A 30 DSQEVRDYCEKKGWIVN 46 (60)
T ss_dssp CCHHHHHHHHHHTCCCC
T ss_pred CCHHHHHHHHHCCceec
Confidence 35899999999999983
No 35
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=59.36 E-value=23 Score=23.90 Aligned_cols=51 Identities=6% Similarity=0.131 Sum_probs=39.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHHHHHHHh
Q 029202 104 SQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQ 155 (197)
Q Consensus 104 s~~~~~~i~~l~~~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~~~~~ 155 (197)
.+.+..+...+.+..|.+|+..+.. ....++.++|+.||++..-+-...+.
T Consensus 14 ~~~~~~~~~aL~~~~Rl~IL~~l~~-~~~~~~~ela~~l~is~stvs~hL~~ 64 (99)
T 2zkz_A 14 LEDDAELLKTMAHPMRLKIVNELYK-HKALNVTQIIQILKLPQSTVSQHLCK 64 (99)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHH-HSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH-CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 3567777888888999999965543 36799999999999998766665553
No 36
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=57.14 E-value=18 Score=24.53 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhc--ccCHHHHHHHcCCCHHHHHHHHHhc-CCee
Q 029202 120 KRMFQLLLSAYS--TISTQDTALFLGMNEDDAAYYVQQQ-GWTL 160 (197)
Q Consensus 120 ~~i~~lis~AY~--sIs~~~~a~~Lgls~~e~~~~~~~~-GW~~ 160 (197)
.++.+.|..-|. .++++++|..+|+|..-+....++. |=+.
T Consensus 6 ~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~ 49 (107)
T 2k9s_A 6 REACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISV 49 (107)
T ss_dssp HHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHHHCcCH
Confidence 356677777775 8999999999999998877666653 5443
No 37
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=56.26 E-value=26 Score=29.03 Aligned_cols=50 Identities=10% Similarity=0.080 Sum_probs=37.9
Q ss_pred HHHHHHHHhhcccCHHHHHHHcCCCHHHHHHHHHhcCCeecCCCceEeec
Q 029202 121 RMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVK 170 (197)
Q Consensus 121 ~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~~~~~~GW~~d~~~~~~~P~ 170 (197)
.+++.+...-..|+++++++..|+..+|++...+..|+-.--.|+.++-.
T Consensus 197 ~i~~~L~~~~~~isi~~is~~Tgi~~~Dii~tL~~l~~l~~~kg~~~i~~ 246 (276)
T 3to7_A 197 TLITLLVEHQKEITIDEISSMTSMTTTDILHTAKTLNILRYYKGQHIIFL 246 (276)
T ss_dssp HHHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHHHTTCEEEETTEEEEEC
T ss_pred HHHHHHHhcCCceeHHHHHHHhCCCHHHHHHHHHHCCCEEEeCCcEEEEE
Confidence 33333333346899999999999999999999999999865556665543
No 38
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=55.75 E-value=12 Score=21.76 Aligned_cols=28 Identities=25% Similarity=0.617 Sum_probs=24.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCCeecC
Q 029202 135 TQDTALFLGMNEDDAAYYVQQQGWTLDP 162 (197)
Q Consensus 135 ~~~~a~~Lgls~~e~~~~~~~~GW~~d~ 162 (197)
+..+....|.+++.+..+....+|.++.
T Consensus 9 i~~F~~iTg~~~~~A~~~L~~~~wdle~ 36 (46)
T 1v92_A 9 LREFVAVTGAEEDRARFFLESAGWDLQI 36 (46)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHTTSCSHH
T ss_pred HHHHHHHhCcCHHHHHHHHHHcCCCHHH
Confidence 5677788899999999999999999863
No 39
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=54.96 E-value=7.4 Score=27.74 Aligned_cols=17 Identities=24% Similarity=0.472 Sum_probs=15.4
Q ss_pred CHHHHHHHHHhcCCeec
Q 029202 145 NEDDAAYYVQQQGWTLD 161 (197)
Q Consensus 145 s~~e~~~~~~~~GW~~d 161 (197)
+.++++.||++.||.+.
T Consensus 60 skE~AiayAek~G~~y~ 76 (106)
T 2jya_A 60 TQEQAEAYAQRKGIEYR 76 (106)
T ss_dssp SHHHHHHHHHHHTCEEE
T ss_pred CHHHHHHHHHHcCCEEE
Confidence 47999999999999994
No 40
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=54.77 E-value=10 Score=21.25 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=20.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCCeec
Q 029202 135 TQDTALFLGMNEDDAAYYVQQQGWTLD 161 (197)
Q Consensus 135 ~~~~a~~Lgls~~e~~~~~~~~GW~~d 161 (197)
+..+..| |++.++++......||.++
T Consensus 8 i~~L~~m-Gf~~~~a~~AL~~~~~n~e 33 (40)
T 1z96_A 8 IAQLVSM-GFDPLEAAQALDAANGDLD 33 (40)
T ss_dssp HHHHHHT-TCCHHHHHHHHHHTTTCHH
T ss_pred HHHHHHc-CCCHHHHHHHHHHcCCCHH
Confidence 5667777 9999999888888888664
No 41
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=54.01 E-value=64 Score=23.88 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=25.1
Q ss_pred ccCHHHHHHHcCCCHHHH---HHHHHhcCCeecCCCceEe
Q 029202 132 TISTQDTALFLGMNEDDA---AYYVQQQGWTLDPASRMLT 168 (197)
Q Consensus 132 sIs~~~~a~~Lgls~~e~---~~~~~~~GW~~d~~~~~~~ 168 (197)
.++..++|+|+|++.+-+ .+-.++.|+---..+.+.+
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 208 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKLSRGKITI 208 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEE
Confidence 688999999999997554 4445567886433344433
No 42
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=53.67 E-value=38 Score=22.93 Aligned_cols=37 Identities=24% Similarity=0.441 Sum_probs=27.3
Q ss_pred HHHHHHHhhcccCHHHHHHHcCCCH---HHHHHHHHhcCC
Q 029202 122 MFQLLLSAYSTISTQDTALFLGMNE---DDAAYYVQQQGW 158 (197)
Q Consensus 122 i~~lis~AY~sIs~~~~a~~Lgls~---~e~~~~~~~~GW 158 (197)
+++...+.-..++.+++..+..++. ..+-+|..+.||
T Consensus 48 Li~E~~k~g~~lkk~da~~~~kiD~~K~~~iydf~~~~Gw 87 (88)
T 2elj_A 48 MFRELLKTGGNLSKSACRELLNIDPIKANRIYDFFQSQNW 87 (88)
T ss_dssp HHHHHHHHSSCCCHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCccHHHHHHHHcccHHHHHHHHHHHHHcCC
Confidence 3333333344588999999999986 467888999999
No 43
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=52.01 E-value=16 Score=30.36 Aligned_cols=40 Identities=8% Similarity=0.055 Sum_probs=31.6
Q ss_pred hcccCHHHHHHHcCCCHHHHHHHHHhcCCeecCCCceEee
Q 029202 130 YSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTV 169 (197)
Q Consensus 130 Y~sIs~~~~a~~Lgls~~e~~~~~~~~GW~~d~~~~~~~P 169 (197)
-..|++++++...|+..+|++...+..|.-.--.|+.++-
T Consensus 210 ~~~isi~~is~~T~i~~~Dii~tL~~l~~l~~~kg~~~i~ 249 (280)
T 2ou2_A 210 RPQITINEISEITSIKKEDVISTLQYLNLINYYKGQYILT 249 (280)
T ss_dssp --CCBHHHHHHHHCBCHHHHHHHHHHTTCCCBCSSSBBC-
T ss_pred CCceeHHHHHHHhCCCHHHHHHHHHHCCcEEEECCeEEEE
Confidence 3489999999999999999999999988876545655543
No 44
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.42 E-value=8.5 Score=27.60 Aligned_cols=30 Identities=23% Similarity=0.557 Sum_probs=28.0
Q ss_pred CCcchHHHHHccccHHHHHHHHhHHhhhhh
Q 029202 1 MDFSPLTDALASKSYEKIADICDDLMLKVA 30 (197)
Q Consensus 1 ~~~~~i~~~~~~~~~~~l~~~~e~~El~~~ 30 (197)
||+..|+.=+..+.|..+-++..+..|-..
T Consensus 60 mdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 89 (123)
T 2dat_A 60 VDFKKIKERIRNHKYRSLGDLEKDVMLLCH 89 (123)
T ss_dssp CCHHHHHHHHTTTCCCSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999999999863
No 45
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=50.45 E-value=38 Score=27.03 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhcccCHHHHHHHcCCCHHHHHHHHHhc-CCeecCCCceEe
Q 029202 118 YTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQ-GWTLDPASRMLT 168 (197)
Q Consensus 118 iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~~~~~~-GW~~d~~~~~~~ 168 (197)
++..+++++. -=+-.+++++|.-+|.+.+++.+...+. +..+|++|+++-
T Consensus 23 ~~~~llr~la-~Grpv~~~~LA~~~g~~~~~v~~~L~~l~~~~~D~~G~Ivg 73 (220)
T 3f2g_A 23 LLVPLLRELA-KGRPVSRTTLAGILDWPAERVAAVLEQATSTEYDKDGNIIG 73 (220)
T ss_dssp HHHHHHHHHT-TTSCBCHHHHHHHHTCCHHHHHHHHHHCTTCEECTTSCEEE
T ss_pred HHHHHHHHHh-cCCCCCHHHHHHHhCcCHHHHHHHHHhCCcEEECCCCCEEE
Confidence 3444455555 4467889999999999999999998885 899999888653
No 46
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=50.41 E-value=28 Score=23.51 Aligned_cols=39 Identities=10% Similarity=0.266 Sum_probs=27.4
Q ss_pred HHHHHHHHhh-cccCHHHHHHHcCCCHHHHHHHHHhc-CCe
Q 029202 121 RMFQLLLSAY-STISTQDTALFLGMNEDDAAYYVQQQ-GWT 159 (197)
Q Consensus 121 ~i~~lis~AY-~sIs~~~~a~~Lgls~~e~~~~~~~~-GW~ 159 (197)
++...|..-| ..++++++|..+|+|..-+....++. |=+
T Consensus 6 ~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~~G~s 46 (108)
T 3mn2_A 6 QVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRSRGYS 46 (108)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHHHhCcC
Confidence 4444555544 56899999999999988777666653 533
No 47
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=50.01 E-value=12 Score=31.10 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=27.7
Q ss_pred cccCHHHHHHHcCCCHHHHHHHHHhcCCeecCCCceEee
Q 029202 131 STISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTV 169 (197)
Q Consensus 131 ~sIs~~~~a~~Lgls~~e~~~~~~~~GW~~d~~~~~~~P 169 (197)
..|++++++...|+..+|++...+..|+-..-.|+.++.
T Consensus 207 ~~isi~~is~~T~i~~~Dii~tL~~l~~l~~~kg~~~i~ 245 (278)
T 2pq8_A 207 GTLSIKDLSQMTSITQNDIISTLQSLNMVKYWKGQHVIC 245 (278)
T ss_dssp ----CHHHHHHHCBCHHHHHHHHHHTTCEEC----CEEC
T ss_pred CCccHHHHHHHhCCCHHHHHHHHHHCCCEEEeCCcEEEE
Confidence 489999999999999999999999999887655665554
No 48
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=49.38 E-value=17 Score=24.28 Aligned_cols=38 Identities=8% Similarity=0.107 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhh---cccCHHHHHHHc-CCCHHHHHHHHHh
Q 029202 118 YTKRMFQLLLSAY---STISTQDTALFL-GMNEDDAAYYVQQ 155 (197)
Q Consensus 118 iR~~i~~lis~AY---~sIs~~~~a~~L-gls~~e~~~~~~~ 155 (197)
-|.+|++...+-. ..+.++.+|+.. |+|..|+...|.+
T Consensus 15 ~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~e 56 (86)
T 2krk_A 15 ARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTE 56 (86)
T ss_dssp HHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 4777777766654 367888888888 9999998888765
No 49
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=48.86 E-value=30 Score=22.79 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=28.7
Q ss_pred HHHHHHHHHHh------hcccCHHHHHHHcCCCHHHHHHH---HHhcCCee
Q 029202 119 TKRMFQLLLSA------YSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 160 (197)
Q Consensus 119 R~~i~~lis~A------Y~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 160 (197)
+++|++.|... | ..++.++|..||+|..-+... ..+.|.-.
T Consensus 6 ~~~IL~~I~~~i~~~~g~-~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~ 55 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGA-PVKTRDIADAAGLSIYQVRLYLEQLHDVGVLE 55 (77)
T ss_dssp HHHHHHHHHHHHHHHTTS-CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHhhccCC-CcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 55677777665 5 499999999999996545444 33456554
No 50
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=48.80 E-value=30 Score=23.41 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=27.9
Q ss_pred HHHHHHHHhhc-ccCHHHHHHHcCCCHHHHHHHHHhc-CCee
Q 029202 121 RMFQLLLSAYS-TISTQDTALFLGMNEDDAAYYVQQQ-GWTL 160 (197)
Q Consensus 121 ~i~~lis~AY~-sIs~~~~a~~Lgls~~e~~~~~~~~-GW~~ 160 (197)
++...|..-|. .++++++|..+|+|..-+....++. |=+.
T Consensus 9 ~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~ 50 (108)
T 3oou_A 9 NVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKEMGEHF 50 (108)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH
Confidence 44455555554 6999999999999988776666554 5443
No 51
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=48.46 E-value=81 Score=23.43 Aligned_cols=57 Identities=14% Similarity=0.133 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhhc-----------ccCHHHHHHHcCCCHHHH---HHHHHhcCCeecCCCceEeecC
Q 029202 115 SELYTKRMFQLLLSAYS-----------TISTQDTALFLGMNEDDA---AYYVQQQGWTLDPASRMLTVKK 171 (197)
Q Consensus 115 ~~~iR~~i~~lis~AY~-----------sIs~~~~a~~Lgls~~e~---~~~~~~~GW~~d~~~~~~~P~~ 171 (197)
....++|++..+-.-+. .++..++|+|+|++.+-+ .+-.++.|+---..+.+.+...
T Consensus 150 ~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~ 220 (227)
T 3dkw_A 150 LKNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLDGREISILDR 220 (227)
T ss_dssp HHHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEESSSCEEESCS
T ss_pred cCCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEecCCEEEEeCH
Confidence 34567788776544332 367789999999997554 4445567995543455555543
No 52
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=46.47 E-value=26 Score=23.95 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=29.0
Q ss_pred HHHHHHHHhh-cccCHHHHHHHcCCCHHHHHHHHHhc-CCee
Q 029202 121 RMFQLLLSAY-STISTQDTALFLGMNEDDAAYYVQQQ-GWTL 160 (197)
Q Consensus 121 ~i~~lis~AY-~sIs~~~~a~~Lgls~~e~~~~~~~~-GW~~ 160 (197)
++...|..-| ..++++++|..+|+|..-+....++. |=+.
T Consensus 11 ~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~ 52 (113)
T 3oio_A 11 EAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTVP 52 (113)
T ss_dssp HHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCH
T ss_pred HHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH
Confidence 4555666665 45899999999999988877776654 5543
No 53
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=45.49 E-value=38 Score=26.01 Aligned_cols=51 Identities=12% Similarity=0.215 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHHHHH---HHhcCCee
Q 029202 108 QALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 160 (197)
Q Consensus 108 ~~~i~~l~~~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 160 (197)
..++..+.+..|.+|+.++.. ..++..++|..+|+|..-+... ..+.|+-.
T Consensus 11 ~~~~k~l~d~~~~~IL~~L~~--~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~ 64 (192)
T 1uly_A 11 PEVIKVMLEDTRRKILKLLRN--KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVE 64 (192)
T ss_dssp HHHHHHHHSHHHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 345566678889999999974 6899999999999997655444 44578865
No 54
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=45.38 E-value=37 Score=23.69 Aligned_cols=28 Identities=4% Similarity=0.088 Sum_probs=19.7
Q ss_pred ccCHHHHHHHcCCCHHHHHHHHHhcCCe
Q 029202 132 TISTQDTALFLGMNEDDAAYYVQQQGWT 159 (197)
Q Consensus 132 sIs~~~~a~~Lgls~~e~~~~~~~~GW~ 159 (197)
..++.++|.-.|.|+.-+..||++.|..
T Consensus 39 ~~si~elA~~~~vS~aTv~Rf~kklG~~ 66 (111)
T 2o3f_A 39 ESTVNEISALANSSDAAVIRLCXSLGLK 66 (111)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHTTCS
T ss_pred hcCHHHHHHHHCCCHHHHHHHHHHcCCC
Confidence 4677777777777777777777776654
No 55
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=44.09 E-value=16 Score=24.91 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHcCCCHHH---HHHHHHhcCCee
Q 029202 105 QEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDD---AAYYVQQQGWTL 160 (197)
Q Consensus 105 ~~~~~~i~~l~~~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e---~~~~~~~~GW~~ 160 (197)
+.+..++..+.+..|.+|+.++...=..++..++|..+|+|..- ..+-..+.|+-.
T Consensus 6 ~~~~~~~~~~~~~~~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~ 64 (110)
T 1q1h_A 6 DLFINLAKSLLGDDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVS 64 (110)
T ss_dssp THHHHHHHTTSCSTTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 34455555555667778888876555469999999999999654 455555679964
No 56
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=43.30 E-value=45 Score=22.95 Aligned_cols=42 Identities=10% Similarity=-0.004 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhh-cccCHHHHHHHcCCCHHHHHHHHHhcCCee
Q 029202 119 TKRMFQLLLSAY-STISTQDTALFLGMNEDDAAYYVQQQGWTL 160 (197)
Q Consensus 119 R~~i~~lis~AY-~sIs~~~~a~~Lgls~~e~~~~~~~~GW~~ 160 (197)
-+++...|..-| ..++++++|..+|+|..-+....++.|=+.
T Consensus 9 ~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~G~s~ 51 (120)
T 3mkl_A 9 RTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLREEETSY 51 (120)
T ss_dssp HHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHHcCCCH
Confidence 345556665554 468999999999999988877766555443
No 57
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=42.93 E-value=29 Score=22.49 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhhc---ccCHHHHHHHc-CCCHHHHHHHHHhc
Q 029202 117 LYTKRMFQLLLSAYS---TISTQDTALFL-GMNEDDAAYYVQQQ 156 (197)
Q Consensus 117 ~iR~~i~~lis~AY~---sIs~~~~a~~L-gls~~e~~~~~~~~ 156 (197)
.-|.+|++...+-+. .+.++.+|+.. |+|+.|+...|.+-
T Consensus 4 ~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA 47 (83)
T 3aji_B 4 RQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQES 47 (83)
T ss_dssp HHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 347788887776653 57788888887 99999999888753
No 58
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=42.87 E-value=93 Score=23.51 Aligned_cols=118 Identities=8% Similarity=-0.014 Sum_probs=73.6
Q ss_pred HHHHHHHHhhcCHHHHHHHHhcCC--hhhhhhcHHHHHHHHHHHHHHcCChHHHHHHhhCCCCcHHHHHHHHHHHHHHHH
Q 029202 43 VIHLLGYYYVNDINSARFLWKSIP--STIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTK 120 (197)
Q Consensus 43 ~~~Ll~~L~~ndl~~ar~l~kRiP--~~~~~~~~~l~~~~~l~~~L~~~~y~~v~~~l~~~~ws~~~~~~i~~l~~~iR~ 120 (197)
.-+...-|..+++-+|..|+.- | ..++ . +.-..+..+.+..-.|+|..+-..... .+ . +......++|.
T Consensus 27 ~~li~~Al~~p~vf~F~eLL~~-p~v~~L~-~-~~~~~~~~LL~iF~~G~~~~y~~~~~~-~p--~---L~~~~~~Klrl 97 (169)
T 3chm_A 27 GPLIIEATSHPSLFAFSEILAL-PNVAQLE-G-TTDSVYLDLLRLFAHGTWGDYKCNATR-LP--H---LSPDQILKLKQ 97 (169)
T ss_dssp HHHHHHHHHCTTCCCCHHHHTC-HHHHTTT-T-STTHHHHHHHHHHHHCCHHHHHHHGGG-SC--C---CCHHHHHHHHH
T ss_pred HHHHHHHhcCCCeeehHHHhCC-hHHHHhc-C-CChhHHHHHHHHHhcCCHHHHHHhHHh-Cc--c---hHHHHHHHHHH
Confidence 3344455555666666666632 2 2222 2 224566788889999999885544333 21 1 22566677766
Q ss_pred HHHHHHHHhhcccCHHHHHHHcCCC-HHHHHHHHH-h---cCC---eecCCCceEee
Q 029202 121 RMFQLLLSAYSTISTQDTALFLGMN-EDDAAYYVQ-Q---QGW---TLDPASRMLTV 169 (197)
Q Consensus 121 ~i~~lis~AY~sIs~~~~a~~Lgls-~~e~~~~~~-~---~GW---~~d~~~~~~~P 169 (197)
=++--+...-+.|+.+++++-|+++ .+|+..++. + .|- ++|.-.+.+..
T Consensus 98 LtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V 154 (169)
T 3chm_A 98 LTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEV 154 (169)
T ss_dssp HHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEE
T ss_pred HHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEE
Confidence 5555455557899999999999999 889888766 3 354 45655555443
No 59
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=42.51 E-value=66 Score=20.88 Aligned_cols=43 Identities=16% Similarity=0.212 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHH---HHHHHhcCCee
Q 029202 117 LYTKRMFQLLLSAYSTISTQDTALFLGMNEDDA---AYYVQQQGWTL 160 (197)
Q Consensus 117 ~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~---~~~~~~~GW~~ 160 (197)
..+.+++..+.. ...++..+++..+|++..-+ .+-..+.||-.
T Consensus 20 ~~~~~il~~l~~-~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~ 65 (109)
T 1sfx_A 20 PSDVRIYSLLLE-RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVR 65 (109)
T ss_dssp HHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 345566776654 46799999999999997554 44455689976
No 60
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=42.15 E-value=39 Score=22.98 Aligned_cols=52 Identities=8% Similarity=0.090 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHc-CCCHHH---HHHHHHhcCCee
Q 029202 107 AQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFL-GMNEDD---AAYYVQQQGWTL 160 (197)
Q Consensus 107 ~~~~i~~l~~~iR~~i~~lis~AY~sIs~~~~a~~L-gls~~e---~~~~~~~~GW~~ 160 (197)
+...+..+.+..|-.|+..+. ...++..++++.+ |++..- ..+-..+.|+-.
T Consensus 4 ~~~~l~~l~~~~~~~IL~~L~--~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~ 59 (107)
T 2hzt_A 4 VEATLEVIGGKWKXVILXHLT--HGKKRTSELKRLMPNITQKMLTQQLRELEADGVIN 59 (107)
T ss_dssp HHHHHHHHCSTTHHHHHHHHT--TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCccHHHHHHHHH--hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEE
Confidence 344556666666778888775 5789999999999 999754 455566789986
No 61
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=41.57 E-value=27 Score=25.75 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHH---HHHHHhcCCee
Q 029202 109 ALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDA---AYYVQQQGWTL 160 (197)
Q Consensus 109 ~~i~~l~~~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~---~~~~~~~GW~~ 160 (197)
.+...|.+..|.+|+.++. -...++.+++..||++..-+ .+...+.|+..
T Consensus 50 ~~l~aL~~p~R~~IL~~L~--~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~ 102 (151)
T 3f6v_A 50 DQLEVAAEPTRRRLVQLLT--SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVT 102 (151)
T ss_dssp CHHHHHTSHHHHHHHHHGG--GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 5677788899999999997 47799999999999997554 44455679876
No 62
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=41.45 E-value=18 Score=25.22 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHHHHH---HHhcCCee
Q 029202 105 QEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 160 (197)
Q Consensus 105 ~~~~~~i~~l~~~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 160 (197)
+.+..+...+.+..|.+|+..+.. ...+..+++..||++..-+-.. ..+.|+-.
T Consensus 9 ~~~~~~~~aL~~~~r~~IL~~L~~--~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~ 65 (118)
T 2jsc_A 9 SALARLGRALADPTRCRILVALLD--GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVV 65 (118)
T ss_dssp --CTTHHHHHSSHHHHHHHHHHHT--TCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEE
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceE
Confidence 344556677778889999998874 4688999999999997655544 44568875
No 63
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=41.11 E-value=30 Score=26.00 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=33.3
Q ss_pred cccCHHHHHHHcCCCHHHHHHHHHhc---CCeecCCCceEeecCC
Q 029202 131 STISTQDTALFLGMNEDDAAYYVQQQ---GWTLDPASRMLTVKKQ 172 (197)
Q Consensus 131 ~sIs~~~~a~~Lgls~~e~~~~~~~~---GW~~d~~~~~~~P~~~ 172 (197)
.-+++.++|++||++..-+.+.+.+. +++++ +...+|...
T Consensus 30 ~~LTv~EVAe~LgVs~srV~~LIr~G~L~AVr~G--r~~rVP~~f 72 (148)
T 2kfs_A 30 PTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRA--GGVVIPQVF 72 (148)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHTTSCCCEEET--TEEEEEGGG
T ss_pred ceEcHHHHHHHhCCCHHHHHHHHHCCCceEEEEC--CEEEecHHH
Confidence 45789999999999999999999874 88884 667788765
No 64
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=40.79 E-value=40 Score=26.52 Aligned_cols=40 Identities=15% Similarity=0.015 Sum_probs=30.6
Q ss_pred HHHHHHHHhhcc-cCHHHHHHHcCCCHHHHHHHHHhcCCee
Q 029202 121 RMFQLLLSAYST-ISTQDTALFLGMNEDDAAYYVQQQGWTL 160 (197)
Q Consensus 121 ~i~~lis~AY~s-Is~~~~a~~Lgls~~e~~~~~~~~GW~~ 160 (197)
++.+.|..-|.. ++++++|..+|+|+.-+...+++-|=+.
T Consensus 173 ~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~G~t~ 213 (276)
T 3gbg_A 173 KISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKF 213 (276)
T ss_dssp HHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHHHcCCCH
Confidence 555666666655 9999999999999988888876555443
No 65
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=40.63 E-value=11 Score=27.30 Aligned_cols=30 Identities=23% Similarity=0.463 Sum_probs=28.0
Q ss_pred CCcchHHHHHccccHHHHHHHHhHHhhhhh
Q 029202 1 MDFSPLTDALASKSYEKIADICDDLMLKVA 30 (197)
Q Consensus 1 ~~~~~i~~~~~~~~~~~l~~~~e~~El~~~ 30 (197)
||+..|+.=+..|.|..+-++..+..|-..
T Consensus 68 mDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~ 97 (130)
T 2ouo_A 68 MDMSTIKSKLEAREYRDAQEFGADVRLMFS 97 (130)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999999999863
No 66
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=40.52 E-value=1.1e+02 Score=22.69 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=25.1
Q ss_pred cCHHHHHHHcCCCHHHH---HHHHHhcCCeecCCCceEee
Q 029202 133 ISTQDTALFLGMNEDDA---AYYVQQQGWTLDPASRMLTV 169 (197)
Q Consensus 133 Is~~~~a~~Lgls~~e~---~~~~~~~GW~~d~~~~~~~P 169 (197)
++..++|+|||++.+-+ .+-.++.|+---..+.+.+.
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~ 227 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLKKLQADGLLHARGKTVVLY 227 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEECCCEEEEe
Confidence 78899999999997554 44455679944334444443
No 67
>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1
Probab=40.39 E-value=36 Score=26.24 Aligned_cols=59 Identities=19% Similarity=0.261 Sum_probs=42.4
Q ss_pred CCcHHH--HHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHHHHHHHhcCCeec
Q 029202 102 DWSQEA--QALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLD 161 (197)
Q Consensus 102 ~ws~~~--~~~i~~l~~~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~~~~~~GW~~d 161 (197)
+|.+.+ +.++.....+=+-..=+.+...|-+.|.+++. .-|++..|++++++++|=..+
T Consensus 22 pWCa~Ya~aailN~~~~~~~~~A~~imr~~yPn~S~~~l~-~~~~t~~e~iky~~s~g~~~~ 82 (174)
T 1cv8_A 22 GWCAGYTMSALLNATYNTNKYHAEAVMRFLHPNLQGQQFQ-FTGLTPREMIYFGQTQGRSPQ 82 (174)
T ss_dssp SCHHHHHHHHHHHHHHTCCCCCHHHHHHHHCSSCCHHHHH-HCCCCHHHHHHHHHHTTCCCE
T ss_pred chHHHHHHHHHHHhhhccCcCCHHHHHHHHCCCCCHHHHh-hcCCCHHHHHHHHHHcCCChh
Confidence 566543 33333333332234456788999999999999 999999999999999876543
No 68
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=38.77 E-value=82 Score=20.72 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhhc---ccCHHHHHHHcCCCHHHHHHHHH---hcCCeec
Q 029202 115 SELYTKRMFQLLLSAYS---TISTQDTALFLGMNEDDAAYYVQ---QQGWTLD 161 (197)
Q Consensus 115 ~~~iR~~i~~lis~AY~---sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~d 161 (197)
.+.+.++|+.++. ... .++..++|+-||++...+..... +.|+-..
T Consensus 8 ~~~~~~~IL~~L~-~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~ 59 (81)
T 1qbj_A 8 YQDQEQRILKFLE-ELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQK 59 (81)
T ss_dssp HHHHHHHHHHHHH-HHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred chHHHHHHHHHHH-HcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 3445667777777 445 89999999999999766665543 4687753
No 69
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=38.64 E-value=47 Score=23.25 Aligned_cols=37 Identities=5% Similarity=0.089 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhc-ccCHHHHHHHcCCCHHHHHHHHHhc
Q 029202 120 KRMFQLLLSAYS-TISTQDTALFLGMNEDDAAYYVQQQ 156 (197)
Q Consensus 120 ~~i~~lis~AY~-sIs~~~~a~~Lgls~~e~~~~~~~~ 156 (197)
.++...|..-|. .++++++|..+|+|...+....++.
T Consensus 14 ~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 14 HSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp HHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345555666554 6999999999999987776665543
No 70
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=38.27 E-value=83 Score=24.29 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHH---HHHHHhcCCee
Q 029202 106 EAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDA---AYYVQQQGWTL 160 (197)
Q Consensus 106 ~~~~~i~~l~~~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~---~~~~~~~GW~~ 160 (197)
.+..+...|.+..|-+|+.++. ...++..+++..+|++..-+ .+...+.||-.
T Consensus 4 ~~~~ilkaL~~~~rl~IL~~L~--~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~ 59 (202)
T 2p4w_A 4 ELNRLLDVLGNETRRRILFLLT--KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIE 59 (202)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHH--HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHHHHhCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceE
Confidence 4566778888899999999995 57899999999999997554 44455678875
No 71
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=37.80 E-value=76 Score=27.85 Aligned_cols=55 Identities=20% Similarity=0.154 Sum_probs=29.1
Q ss_pred HHHHHccccHHHHHHHHhHHhhhhhhCCCcCCCcchHHHHHHHHHhhcCHHHHHHHHhcC
Q 029202 6 LTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSI 65 (197)
Q Consensus 6 i~~~~~~~~~~~l~~~~e~~El~~~~~g~~~~~~~py~~~Ll~~L~~ndl~~ar~l~kRi 65 (197)
|..+...|++++-....+++.-. |.. |+..-|..++-.|.-.+++..|..+++++
T Consensus 112 I~~~~~~g~~~~A~~l~~~M~~~----g~~-Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 112 ARLAVAKDDPEMAFDMVKQMKAF----GIQ-PRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHT----TCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCC-CccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 44455555665555555554422 332 33222556666666666666666666654
No 72
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=37.59 E-value=83 Score=20.40 Aligned_cols=88 Identities=13% Similarity=0.160 Sum_probs=49.4
Q ss_pred HHHHccccHHHHHHHHhHHhhhhhhCCCcCCCcchHHHHHHHHHhhcCHHHHHHHHhcCChhhhhhcHH-HHHHHHHHHH
Q 029202 7 TDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAE-VVAAWKIGQH 85 (197)
Q Consensus 7 ~~~~~~~~~~~l~~~~e~~El~~~~~g~~~~~~~py~~~Ll~~L~~ndl~~ar~l~kRiP~~~~~~~~~-l~~~~~l~~~ 85 (197)
..+...|+|++-+..++..--. .|+....+.. +-.+=.+|+-.+|..+|...++++=..-. .++. ......++..
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~--~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLEL-YPNGVYTPNA--LYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CSSSTTHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH-CCCCcccHHH--HHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHH
Confidence 4567889999988888876433 2222211122 23334457778999999888876521111 1211 2233455554
Q ss_pred H-HcCChHHHHHHh
Q 029202 86 L-WTRDYAGVYDAI 98 (197)
Q Consensus 86 L-~~~~y~~v~~~l 98 (197)
+ ..|+|.+....+
T Consensus 86 ~~~~g~~~~A~~~~ 99 (129)
T 2xev_A 86 QYGEGKNTEAQQTL 99 (129)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 4 457887765444
No 73
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=37.36 E-value=47 Score=23.05 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=16.2
Q ss_pred ccCHHHHHHHcCCCHHHHHHHHHhcC
Q 029202 132 TISTQDTALFLGMNEDDAAYYVQQQG 157 (197)
Q Consensus 132 sIs~~~~a~~Lgls~~e~~~~~~~~G 157 (197)
..++.++|.-.|.|+.-+..||++.|
T Consensus 35 ~~si~elA~~~~vS~aTv~Rf~kkLG 60 (107)
T 3iwf_A 35 NMTSQEIANQLETSSTSIIRLSKKVT 60 (107)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred HCCHHHHHHHHCCCHHHHHHHHHHhC
Confidence 45666666666666666666666655
No 74
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=36.73 E-value=1.3e+02 Score=22.80 Aligned_cols=39 Identities=13% Similarity=0.033 Sum_probs=26.6
Q ss_pred ccCHHHHHHHcCCCHHHH---HHHHHhcCCeecCCCceEeec
Q 029202 132 TISTQDTALFLGMNEDDA---AYYVQQQGWTLDPASRMLTVK 170 (197)
Q Consensus 132 sIs~~~~a~~Lgls~~e~---~~~~~~~GW~~d~~~~~~~P~ 170 (197)
.++..++|.|||++.+-+ .+-.++.|+---..+.+.+..
T Consensus 193 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~~i~I~d 234 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIHKKKITVHK 234 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECC
T ss_pred cCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEcCCEEEECC
Confidence 567899999999997554 444556798654345555543
No 75
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=35.90 E-value=68 Score=20.85 Aligned_cols=41 Identities=7% Similarity=0.158 Sum_probs=28.9
Q ss_pred HHHHHHHHhhcccCHHHHHHHcCCCHHH---HHHHHHhcCCeec
Q 029202 121 RMFQLLLSAYSTISTQDTALFLGMNEDD---AAYYVQQQGWTLD 161 (197)
Q Consensus 121 ~i~~lis~AY~sIs~~~~a~~Lgls~~e---~~~~~~~~GW~~d 161 (197)
+++..+...-..++..++|..+|++..- ..+...+.||-..
T Consensus 25 ~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~ 68 (109)
T 2d1h_A 25 AVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVR 68 (109)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEe
Confidence 4444444456789999999999999654 4455566799763
No 76
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=34.27 E-value=87 Score=21.65 Aligned_cols=42 Identities=7% Similarity=0.036 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhcccCHHHHHHHcCCCHHH---HHHHHHhcCCee
Q 029202 119 TKRMFQLLLSAYSTISTQDTALFLGMNEDD---AAYYVQQQGWTL 160 (197)
Q Consensus 119 R~~i~~lis~AY~sIs~~~~a~~Lgls~~e---~~~~~~~~GW~~ 160 (197)
+-+++..+......++..++|..+|++..- +++-..++||-.
T Consensus 37 ~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~ 81 (147)
T 2hr3_A 37 QLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIV 81 (147)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEe
Confidence 346666776656789999999999999654 455566789986
No 77
>2l48_A N-acetylmuramoyl-L-alanine amidase; bacillus anthracis gamma- phage endolysin, PLYG, cell WALL B domain, homodimer, ACT-type domain; NMR {Bacillus phage gamma}
Probab=33.84 E-value=62 Score=21.95 Aligned_cols=47 Identities=11% Similarity=0.065 Sum_probs=28.8
Q ss_pred CCC-HHHHHHHHHhcCCeecCCCceEeecCCCC-CCCCCCChHHHHHHHHHHH
Q 029202 143 GMN-EDDAAYYVQQQGWTLDPASRMLTVKKQPL-VTEQKLDPSKLQRLTEYVF 193 (197)
Q Consensus 143 gls-~~e~~~~~~~~GW~~d~~~~~~~P~~~~~-~~~~~~~~~qL~~LT~~v~ 193 (197)
|.+ ..|+.....++||+= +++....--. ......++.||+++|.++-
T Consensus 28 g~~~v~ev~~am~~~g~~g----kii~~~dGl~y~~T~~~s~~eLdk~t~wLD 76 (85)
T 2l48_A 28 SPYETPDVMGALTSLKMTA----DFILQSDGLTYFISKPTSDAQLKAMKEYLD 76 (85)
T ss_dssp CTTTHHHHHHHHHHTTCCE----EEEECTTSCEEEEECCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCceE----EEEECCCceEEEEeCCCCHHHHHHHHHHHh
Confidence 444 588999999999973 3433211000 1112348899999998863
No 78
>3e11_A Predicted zincin-like metalloprotease; DUF1025 family protein, zincin-like fold, conserved matrix metalloprotease motif; 1.80A {Acidothermus cellulolyticus 11B} SCOP: d.92.1.17
Probab=33.41 E-value=25 Score=25.10 Aligned_cols=20 Identities=15% Similarity=0.443 Sum_probs=16.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCC
Q 029202 135 TQDTALFLGMNEDDAAYYVQQQGW 158 (197)
Q Consensus 135 ~~~~a~~Lgls~~e~~~~~~~~GW 158 (197)
+..+|.+||++++++.. +||
T Consensus 95 vhEiahh~G~~~e~l~~----~g~ 114 (114)
T 3e11_A 95 VHEIAHHFGIDDERLHE----LGY 114 (114)
T ss_dssp HHHHHHHTTCCHHHHHT----TTC
T ss_pred HHHHHHHcCCCHHHHHH----ccC
Confidence 46788999999999844 777
No 79
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=33.04 E-value=89 Score=23.34 Aligned_cols=95 Identities=11% Similarity=0.070 Sum_probs=50.2
Q ss_pred HHHHHhcCChhhhhhcHHHHHHHHHHHHHHcCChHHHHHHhhCCCCcHHHHHHHHH-HHHHHHHHHHHHHHHhhcccCHH
Q 029202 58 ARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAA-FSELYTKRMFQLLLSAYSTISTQ 136 (197)
Q Consensus 58 ar~l~kRiP~~~~~~~~~l~~~~~l~~~L~~~~y~~v~~~l~~~~ws~~~~~~i~~-l~~~iR~~i~~lis~AY~sIs~~ 136 (197)
+|.+-|||-. +..+..+.++--|..++.+|- ..|+..+.+..+-+.+..++.. ....||++++.+|..=.....
T Consensus 54 ~ral~krl~~--~n~~vql~AL~LLd~~vkNcG-~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~-- 128 (163)
T 1x5b_A 54 LKAIMKRVNH--KVPHVALQALTLLGACVANCG-KIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQ-- 128 (163)
T ss_dssp HHHHHHHHTC--SSHHHHHHHHHHHHHHHHHTC-HHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhh-HHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc--
Confidence 4555556532 223344666666666666654 5667666653444444444432 224788888888765433322
Q ss_pred HHHHHcCCC-HHHHHHHHHhcCCee
Q 029202 137 DTALFLGMN-EDDAAYYVQQQGWTL 160 (197)
Q Consensus 137 ~~a~~Lgls-~~e~~~~~~~~GW~~ 160 (197)
..-++. -.++-+..+.+|-.+
T Consensus 129 ---~~~~l~~i~~~Y~~Lk~~G~~F 150 (163)
T 1x5b_A 129 ---KDPQFSLISATIKSMKEEGITF 150 (163)
T ss_dssp ---TCSTTHHHHHHHHHHHTTTCCC
T ss_pred ---CCcccHHHHHHHHHHHHcCCCC
Confidence 111222 245566666667555
No 80
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.63 E-value=37 Score=21.29 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=23.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCCeecCC
Q 029202 135 TQDTALFLGMNEDDAAYYVQQQGWTLDPA 163 (197)
Q Consensus 135 ~~~~a~~Lgls~~e~~~~~~~~GW~~d~~ 163 (197)
+..+....|.+++.+..|....+|.++..
T Consensus 19 i~qF~~iTg~~~~~A~~~Le~~~WnLe~A 47 (62)
T 2dal_A 19 IQQFTTITGASESVGKHMLEACNNNLEMA 47 (62)
T ss_dssp HHHHHHHTCCCHHHHHHHHHTTTSCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCCHHHH
Confidence 45566788999999999999999998643
No 81
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=32.47 E-value=56 Score=21.92 Aligned_cols=46 Identities=4% Similarity=-0.027 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHHHHHHHh---cCCeecCCC
Q 029202 117 LYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQ---QGWTLDPAS 164 (197)
Q Consensus 117 ~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~~~~~---~GW~~d~~~ 164 (197)
.++++|+.++.+ -. ++..++|+-||++...+...... .|--....+
T Consensus 17 ~~~~~IL~lL~~-~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~ 65 (82)
T 1oyi_A 17 EIVCEAIKTIGI-EG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDD 65 (82)
T ss_dssp HHHHHHHHHHSS-ST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSS
T ss_pred HHHHHHHHHHHH-cC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCC
Confidence 567788887774 33 99999999999999888777554 477665443
No 82
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=31.76 E-value=41 Score=23.76 Aligned_cols=28 Identities=11% Similarity=0.154 Sum_probs=22.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCCeecC
Q 029202 135 TQDTALFLGMNEDDAAYYVQQQGWTLDP 162 (197)
Q Consensus 135 ~~~~a~~Lgls~~e~~~~~~~~GW~~d~ 162 (197)
+..+..+.|+++++++....+.+|-+..
T Consensus 43 Vk~L~EmtG~seeeAr~AL~~~ngDl~~ 70 (104)
T 1wj7_A 43 VKQLIDITGKNQDECVIALHDCNGDVNR 70 (104)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHcCCCHHH
Confidence 4567778899999999998888998753
No 83
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=31.63 E-value=1.1e+02 Score=25.36 Aligned_cols=47 Identities=23% Similarity=0.317 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHh-hcccCHHHHHHHcCCCHHHHHHH---HHhcCCeecC
Q 029202 116 ELYTKRMFQLLLSA-YSTISTQDTALFLGMNEDDAAYY---VQQQGWTLDP 162 (197)
Q Consensus 116 ~~iR~~i~~lis~A-Y~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~d~ 162 (197)
+..|+++++++..+ -.-+|-+++|..||+|...+-+. .++.|..+..
T Consensus 2 ~~~~~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~i~~ 52 (323)
T 3rkx_A 2 SKYSQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEGCKIDS 52 (323)
T ss_dssp -CHHHHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred chHHHHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhcCCeEEE
Confidence 34688999999765 45799999999999997665554 4557998763
No 84
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.09 E-value=38 Score=21.65 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=24.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCCeecCC
Q 029202 135 TQDTALFLGMNEDDAAYYVQQQGWTLDPA 163 (197)
Q Consensus 135 ~~~~a~~Lgls~~e~~~~~~~~GW~~d~~ 163 (197)
+..+....|.+++.+..|....+|.++..
T Consensus 21 i~qF~~iTg~~~~~A~~~Le~~~WdLe~A 49 (66)
T 2dzl_A 21 INQFVLAAGCAADQAKQLLQAAHWQFETA 49 (66)
T ss_dssp HHHHHHHHCCCHHHHHHHHHTTTTCHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCHHHH
Confidence 55677888999999999999999998754
No 85
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=31.05 E-value=1.5e+02 Score=21.46 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=25.4
Q ss_pred ccCHHHHHHHcCCCHHHH---HHHHHhcCCeecCCCceEee
Q 029202 132 TISTQDTALFLGMNEDDA---AYYVQQQGWTLDPASRMLTV 169 (197)
Q Consensus 132 sIs~~~~a~~Lgls~~e~---~~~~~~~GW~~d~~~~~~~P 169 (197)
.++..++|+|||++.+-+ .+-.++.||---..+.+.+.
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~ 204 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVF 204 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEE
Confidence 478899999999997554 44455689943323444443
No 86
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=30.95 E-value=97 Score=21.22 Aligned_cols=50 Identities=8% Similarity=-0.020 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccc-CHHHHHHHcCCCH---HHHHHHHHhcCCeec
Q 029202 112 AAFSELYTKRMFQLLLSAYSTI-STQDTALFLGMNE---DDAAYYVQQQGWTLD 161 (197)
Q Consensus 112 ~~l~~~iR~~i~~lis~AY~sI-s~~~~a~~Lgls~---~e~~~~~~~~GW~~d 161 (197)
..+.+.+++.|..---..=..+ +...+|..+|+|. -++.....+.|+-..
T Consensus 12 ~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~ 65 (113)
T 3tqn_A 12 QQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEK 65 (113)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4455556666555443444567 8999999999995 566666777899653
No 87
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=30.63 E-value=56 Score=22.32 Aligned_cols=51 Identities=10% Similarity=0.154 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHc-CCCHHH---HHHHHHhcCCee
Q 029202 108 QALVAAFSELYTKRMFQLLLSAYSTISTQDTALFL-GMNEDD---AAYYVQQQGWTL 160 (197)
Q Consensus 108 ~~~i~~l~~~iR~~i~~lis~AY~sIs~~~~a~~L-gls~~e---~~~~~~~~GW~~ 160 (197)
...+..+.+..+-.|+..+.. ..++..+++..+ |++..- ..+-..+.||-.
T Consensus 13 ~~~l~~l~~~~~~~IL~~L~~--~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~ 67 (112)
T 1z7u_A 13 NLALSTINGKWKLSLMDELFQ--GTKRNGELMRALDGITQRVLTDRLREMEKDGLVH 67 (112)
T ss_dssp HHHHHTTCSTTHHHHHHHHHH--SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHcCccHHHHHHHHHh--CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEE
Confidence 334444445556677777764 789999999999 999754 445555679976
No 88
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=30.57 E-value=1.1e+02 Score=22.10 Aligned_cols=68 Identities=12% Similarity=0.087 Sum_probs=37.0
Q ss_pred HHHHHhcCChhhhhhcHHHHHHHHHHHHHHcCChHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 029202 58 ARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLS 128 (197)
Q Consensus 58 ar~l~kRiP~~~~~~~~~l~~~~~l~~~L~~~~y~~v~~~l~~~~ws~~~~~~i~~l~~~iR~~i~~lis~ 128 (197)
+|.+-|||-. +..+..+.++--|..+ +++-=..|+..+.+..+-+.+..++..-...||++++.++..
T Consensus 44 ~rai~Krl~~--~n~~~ql~AL~LLe~~-vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~ 111 (140)
T 3ldz_A 44 LRSIMRRVNH--KDPHVAMQALTLLGAC-VSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVE 111 (140)
T ss_dssp HHHHHHHHTC--SSHHHHHHHHHHHHHH-HHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CChHHHHHHHHHHHHH-HHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 4555556542 2223445555444444 444445667666664444555555544455778888777754
No 89
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=30.22 E-value=75 Score=22.65 Aligned_cols=30 Identities=23% Similarity=0.373 Sum_probs=28.0
Q ss_pred CCcchHHHHHccccHHHHHHHHhHHhhhhh
Q 029202 1 MDFSPLTDALASKSYEKIADICDDLMLKVA 30 (197)
Q Consensus 1 ~~~~~i~~~~~~~~~~~l~~~~e~~El~~~ 30 (197)
||+..|+.-+..|.|..+-++..+..|-..
T Consensus 51 mdL~tI~~kl~~~~Y~~~~~f~~D~~li~~ 80 (130)
T 3dai_A 51 MDLSSVISKIDLHKYLTVKDYLRDIDLICS 80 (130)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999999999863
No 90
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=30.22 E-value=72 Score=26.48 Aligned_cols=31 Identities=13% Similarity=0.078 Sum_probs=24.3
Q ss_pred hcccCHHHHHHHcCCCHHHHHHHHHhcCCee
Q 029202 130 YSTISTQDTALFLGMNEDDAAYYVQQQGWTL 160 (197)
Q Consensus 130 Y~sIs~~~~a~~Lgls~~e~~~~~~~~GW~~ 160 (197)
-..|++++++...|+..+|++...+..|.-.
T Consensus 212 ~~~isi~~is~~T~i~~~DIi~tL~~l~~l~ 242 (284)
T 2ozu_A 212 DKQISIKKLSKLTGICPQDITSTLHHLRMLD 242 (284)
T ss_dssp ----CHHHHHHHHCBCHHHHHHHHHHTTCC-
T ss_pred CCcEeHHHHHHHhCCCHHHHHHHHHHCCCEE
Confidence 4579999999999999999999999887764
No 91
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=29.81 E-value=1.4e+02 Score=20.68 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=28.7
Q ss_pred cccCHHHHHHHcCCCHH---HHHHHHHhcCCeecC
Q 029202 131 STISTQDTALFLGMNED---DAAYYVQQQGWTLDP 162 (197)
Q Consensus 131 ~sIs~~~~a~~Lgls~~---e~~~~~~~~GW~~d~ 162 (197)
..|++.++...||+|-. .+.+|.-..|+|.-.
T Consensus 79 ~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~TrR~ 113 (121)
T 2pjp_A 79 GSTCAADFRDRLGVGRKLAIQILEYFDRIGFTRRR 113 (121)
T ss_dssp SSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCccHHHHHHHHCCcHHHHHHHHHHHhhcCCeEee
Confidence 88999999999999987 788888889999864
No 92
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=29.68 E-value=1.4e+02 Score=20.63 Aligned_cols=41 Identities=12% Similarity=0.040 Sum_probs=30.3
Q ss_pred HHHHHHHHhh--cccCHHHHHHHcCCCHHH---HHHHHHhcCCeec
Q 029202 121 RMFQLLLSAY--STISTQDTALFLGMNEDD---AAYYVQQQGWTLD 161 (197)
Q Consensus 121 ~i~~lis~AY--~sIs~~~~a~~Lgls~~e---~~~~~~~~GW~~d 161 (197)
+++..+...+ ..++..++|.-+|++..- +.....+.|+-..
T Consensus 13 ~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~ 58 (129)
T 2y75_A 13 TIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKS 58 (129)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEe
Confidence 5666677665 568999999999999754 4445566799654
No 93
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=29.48 E-value=76 Score=22.71 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHHHHHH---HhcCCee
Q 029202 117 LYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYV---QQQGWTL 160 (197)
Q Consensus 117 ~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~~~---~~~GW~~ 160 (197)
..+.+++.++..- ..++..++|..+|+|..-+...+ .+.|.-.
T Consensus 8 ~~d~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 53 (152)
T 2cg4_A 8 NLDRGILEALMGN-ARTAYAELAKQFGVSPETIHVRVEKMKQAGIIT 53 (152)
T ss_dssp HHHHHHHHHHHHC-TTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcc
Confidence 4566778777653 68999999999999986654443 3457654
No 94
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=29.46 E-value=1.7e+02 Score=21.56 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=22.3
Q ss_pred ccCHHHHHHHcCCCHHHH---HHHHHhcCCeec
Q 029202 132 TISTQDTALFLGMNEDDA---AYYVQQQGWTLD 161 (197)
Q Consensus 132 sIs~~~~a~~Lgls~~e~---~~~~~~~GW~~d 161 (197)
.++..++|+|+|++.+-+ .+-.++.||---
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 199 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMGILER 199 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEE
Confidence 578899999999997554 444556798654
No 95
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=29.19 E-value=82 Score=20.58 Aligned_cols=31 Identities=13% Similarity=0.233 Sum_probs=28.1
Q ss_pred cccCHHHHHHHcCCCHHHHHHHHHhcCCeec
Q 029202 131 STISTQDTALFLGMNEDDAAYYVQQQGWTLD 161 (197)
Q Consensus 131 ~sIs~~~~a~~Lgls~~e~~~~~~~~GW~~d 161 (197)
...++.++|..=|++.+++.+..++.|.++-
T Consensus 48 ~~~TL~~aa~~~gid~d~l~~~L~~~g~~~~ 78 (81)
T 2fi0_A 48 RKVSLKQGSKLAGTPMDKIVRTLEANGYEVI 78 (81)
T ss_dssp HHCBHHHHHHHHTCCHHHHHHHHHHTTCEEE
T ss_pred ccCcHHHHHHHcCCCHHHHHHHHHHcCCEee
Confidence 3578999999999999999999999999885
No 96
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=28.92 E-value=82 Score=22.44 Aligned_cols=44 Identities=14% Similarity=0.183 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHHHHHH---HhcCCee
Q 029202 116 ELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYV---QQQGWTL 160 (197)
Q Consensus 116 ~~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~~~---~~~GW~~ 160 (197)
+..+.+|+.++.. ...++..++|+.+|+|..-+...+ .+.|+-.
T Consensus 8 d~~d~~il~~L~~-~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 8 DRVDMQLVKILSE-NSRLTYRELADILNTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp CHHHHHHHHHHHH-CTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEE
T ss_pred CHHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3456678887765 478999999999999986655443 4468764
No 97
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=28.50 E-value=84 Score=22.32 Aligned_cols=43 Identities=9% Similarity=0.048 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHHHHH---HHhcCCee
Q 029202 117 LYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 160 (197)
Q Consensus 117 ~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 160 (197)
.++.+++.++.. ...++..++|+.+|+|..-+... ..+.|+-.
T Consensus 5 ~~d~~il~~L~~-~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 50 (144)
T 2cfx_A 5 QIDLNIIEELKK-DSRLSMRELGRKIKLSPPSVTERVRQLESFGIIK 50 (144)
T ss_dssp HHHHHHHHHHHH-CSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 445678887754 47899999999999997665444 44568864
No 98
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=27.74 E-value=1.4e+02 Score=20.93 Aligned_cols=30 Identities=3% Similarity=0.202 Sum_probs=24.9
Q ss_pred cccCHHHHHHHcCCCH---HHHHHHHHhcCCee
Q 029202 131 STISTQDTALFLGMNE---DDAAYYVQQQGWTL 160 (197)
Q Consensus 131 ~sIs~~~~a~~Lgls~---~e~~~~~~~~GW~~ 160 (197)
..+...++..++.++. ..+-+|..+.||--
T Consensus 74 g~lkk~dA~~l~kID~~K~~rIydff~~~GWi~ 106 (108)
T 2cuj_A 74 GGLRLAQARALIKIDVNKTRKIYDFLIREGYIT 106 (108)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHTTTSSC
T ss_pred CCCcHHHHHHHhcccHHHHHHHHHHHHHcCCCC
Confidence 4588899999999986 56788899999964
No 99
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=27.47 E-value=35 Score=21.31 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=19.4
Q ss_pred cCHHHHHHHcCCCHHHHHHHHHh
Q 029202 133 ISTQDTALFLGMNEDDAAYYVQQ 155 (197)
Q Consensus 133 Is~~~~a~~Lgls~~e~~~~~~~ 155 (197)
++..++|.+||+|..=+..+..+
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC
Confidence 67889999999999888877653
No 100
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=27.43 E-value=1e+02 Score=21.21 Aligned_cols=39 Identities=5% Similarity=-0.079 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhcccCHHHHHHHcCCCHHH---HHHHHHhcCCee
Q 029202 120 KRMFQLLLSAYSTISTQDTALFLGMNEDD---AAYYVQQQGWTL 160 (197)
Q Consensus 120 ~~i~~lis~AY~sIs~~~~a~~Lgls~~e---~~~~~~~~GW~~ 160 (197)
-.++..+. ...++..++|..+|++..- +++-..+.||-.
T Consensus 40 ~~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~ 81 (146)
T 2gxg_A 40 FLVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVV 81 (146)
T ss_dssp HHHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEE
Confidence 35666666 7889999999999999654 455566689986
No 101
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=27.40 E-value=1.2e+02 Score=20.84 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=29.7
Q ss_pred HHHHHHHHhhcccCHHHHHHHcCCCHHH---HHHHHHhcCCee
Q 029202 121 RMFQLLLSAYSTISTQDTALFLGMNEDD---AAYYVQQQGWTL 160 (197)
Q Consensus 121 ~i~~lis~AY~sIs~~~~a~~Lgls~~e---~~~~~~~~GW~~ 160 (197)
.++..+......++..++|..+|++..- +++-..+.||-.
T Consensus 41 ~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~ 83 (146)
T 2fbh_A 41 LVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVR 83 (146)
T ss_dssp HHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCee
Confidence 4555554467789999999999999654 445555689986
No 102
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=27.29 E-value=1.2e+02 Score=19.70 Aligned_cols=30 Identities=10% Similarity=0.062 Sum_probs=22.3
Q ss_pred HHHHHHHHhhcccCHHHHHHHcCCCHHHHHH
Q 029202 121 RMFQLLLSAYSTISTQDTALFLGMNEDDAAY 151 (197)
Q Consensus 121 ~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~ 151 (197)
+|.+.+ +....++++++|..||+|+.-+..
T Consensus 6 ~Il~~L-~~~g~vsv~eLa~~l~VS~~TIRr 35 (78)
T 1xn7_A 6 QVRDLL-ALRGRMEAAQISQTLNTPQPMINA 35 (78)
T ss_dssp HHHHHH-HHSCSBCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHH-HHcCCCcHHHHHHHHCcCHHHHHH
Confidence 445555 347899999999999999855433
No 103
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=27.10 E-value=1.9e+02 Score=21.35 Aligned_cols=37 Identities=14% Similarity=0.344 Sum_probs=24.4
Q ss_pred ccCHHHHHHHcCCCHHHH---HHHHHhcCCeecCCCceEe
Q 029202 132 TISTQDTALFLGMNEDDA---AYYVQQQGWTLDPASRMLT 168 (197)
Q Consensus 132 sIs~~~~a~~Lgls~~e~---~~~~~~~GW~~d~~~~~~~ 168 (197)
.++..++|+|+|++.+-+ .+-.++.|+---..+.+.+
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 216 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLI 216 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 378899999999997554 4445567884332344433
No 104
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=26.88 E-value=74 Score=17.56 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=23.9
Q ss_pred HHHHHHHHhhcccCHHHHHHHcCCCHHHHHHHHHhcC
Q 029202 121 RMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQG 157 (197)
Q Consensus 121 ~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~~~~~~G 157 (197)
.+..+... ..+..++|..+|++..=+-.+....|
T Consensus 13 ~i~~l~~~---g~s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 13 QISRLLEK---GHPRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp HHHHHHHT---TCCHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred HHHHHHHc---CCCHHHHHHHHCCCHHHHHHHHHHcc
Confidence 44444432 37899999999999887777665444
No 105
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=26.83 E-value=97 Score=20.89 Aligned_cols=30 Identities=3% Similarity=0.202 Sum_probs=24.8
Q ss_pred cccCHHHHHHHcCCCH---HHHHHHHHhcCCee
Q 029202 131 STISTQDTALFLGMNE---DDAAYYVQQQGWTL 160 (197)
Q Consensus 131 ~sIs~~~~a~~Lgls~---~e~~~~~~~~GW~~ 160 (197)
..++.+++..+..++. ..+-+|..+.||--
T Consensus 56 g~l~k~da~~~~kiD~~K~~~iydf~~~~Gwi~ 88 (90)
T 2aqe_A 56 GGLRLAQARALIKIDVNKTRKIYDFLIREGYIT 88 (90)
T ss_dssp SCCCHHHHHTTSSSSSHHHHHHHHHHHHTTSSC
T ss_pred CCCcHHHHHHHHcccHHHHHHHHHHHHHcCCCC
Confidence 4588899999999974 56788999999964
No 106
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=26.55 E-value=1.7e+02 Score=20.57 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc-CHHHHHHHcCCCH---HHHHHHHHhcCCeec
Q 029202 110 LVAAFSELYTKRMFQLLLSAYSTI-STQDTALFLGMNE---DDAAYYVQQQGWTLD 161 (197)
Q Consensus 110 ~i~~l~~~iR~~i~~lis~AY~sI-s~~~~a~~Lgls~---~e~~~~~~~~GW~~d 161 (197)
+-.++.+.+|+.|..-.=+.=..| +...+|..||+|. -++.......|+-.-
T Consensus 15 lY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~ 70 (134)
T 4ham_A 15 IYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIIT 70 (134)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE
Confidence 345556666777765544555688 7889999999985 567777778899763
No 107
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=26.36 E-value=1e+02 Score=20.10 Aligned_cols=30 Identities=7% Similarity=-0.177 Sum_probs=23.5
Q ss_pred cCHHHHHHHcCCCHHH---HHHHHHhcCCeecC
Q 029202 133 ISTQDTALFLGMNEDD---AAYYVQQQGWTLDP 162 (197)
Q Consensus 133 Is~~~~a~~Lgls~~e---~~~~~~~~GW~~d~ 162 (197)
++..++|..+|++..- +++-..++||-.++
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~ 63 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEEAKMVECE 63 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCC
Confidence 9999999999998644 45556678998543
No 108
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=26.03 E-value=96 Score=22.15 Aligned_cols=42 Identities=12% Similarity=0.250 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHHHHHH---HhcCCe
Q 029202 117 LYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYV---QQQGWT 159 (197)
Q Consensus 117 ~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~~~---~~~GW~ 159 (197)
..+.+++.++... ..++..++|+.+|+|..-+...+ .+.|.-
T Consensus 7 ~~~~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i 51 (151)
T 2cyy_A 7 EIDKKIIKILQND-GKAPLREISKITGLAESTIHERIRKLRESGVI 51 (151)
T ss_dssp HHHHHHHHHHHHC-TTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCe
Confidence 4566778777653 68999999999999986654443 345664
No 109
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=26.03 E-value=1.9e+02 Score=21.03 Aligned_cols=54 Identities=15% Similarity=0.108 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHH----h---hcccCHHHHHHHcCCCHHHH---HHHHHhcCCeecCCCceEee
Q 029202 116 ELYTKRMFQLLLS----A---YSTISTQDTALFLGMNEDDA---AYYVQQQGWTLDPASRMLTV 169 (197)
Q Consensus 116 ~~iR~~i~~lis~----A---Y~sIs~~~~a~~Lgls~~e~---~~~~~~~GW~~d~~~~~~~P 169 (197)
...++|++..+.. . --.++..++|+|+|++.+-+ .+-.++.|+---..+.+.++
T Consensus 140 ~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~ 203 (216)
T 4ev0_A 140 EEARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAEEGVVRLGPGTVEVR 203 (216)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEES
T ss_pred CCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEe
Confidence 4456666666542 1 24578999999999997554 44455678875433444443
No 110
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=25.99 E-value=2.2e+02 Score=23.53 Aligned_cols=83 Identities=6% Similarity=0.037 Sum_probs=49.3
Q ss_pred HccccHHHHHHHHhHHhhhhhhCCC--cCCCcchHHHHHHHHHhhcCHHHHHHHHhcCChhhhh-----hcHHHHHHHHH
Q 029202 10 LASKSYEKIADICDDLMLKVAAEGI--VFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKD-----SRAEVVAAWKI 82 (197)
Q Consensus 10 ~~~~~~~~l~~~~e~~El~~~~~g~--~~~~~~py~~~Ll~~L~~ndl~~ar~l~kRiP~~~~~-----~~~~l~~~~~l 82 (197)
...|++++-+..|++. +. .|. -+.+. +....-+||..|+...|+.+++++. .... .|..+-.+..-
T Consensus 111 ~~~g~~eeAL~~l~~~-i~---~~~~~~~lea--~~l~vqi~L~~~r~d~A~k~l~~~~-~~~~d~~~~~d~~l~~Laea 183 (310)
T 3mv2_B 111 AILGDLDKSLETCVEG-ID---NDEAEGTTEL--LLLAIEVALLNNNVSTASTIFDNYT-NAIEDTVSGDNEMILNLAES 183 (310)
T ss_dssp HHHTCHHHHHHHHHHH-HT---SSCSTTHHHH--HHHHHHHHHHTTCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH-hc---cCCCcCcHHH--HHHHHHHHHHCCCHHHHHHHHHHHH-hcCccccccchHHHHHHHHH
Confidence 3457788877777765 22 121 11334 7777888999999999999998762 2221 23444444333
Q ss_pred HHHHHcC--ChHHHHHHhh
Q 029202 83 GQHLWTR--DYAGVYDAIR 99 (197)
Q Consensus 83 ~~~L~~~--~y~~v~~~l~ 99 (197)
--.+-+| +|...|..++
T Consensus 184 ~v~l~~g~~~~q~A~~~f~ 202 (310)
T 3mv2_B 184 YIKFATNKETATSNFYYYE 202 (310)
T ss_dssp HHHHHHTCSTTTHHHHHHH
T ss_pred HHHHHhCCccHHHHHHHHH
Confidence 2234445 7887554443
No 111
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=25.83 E-value=1.4e+02 Score=22.44 Aligned_cols=89 Identities=9% Similarity=0.078 Sum_probs=52.4
Q ss_pred HHHHccccHHHHHHHHhHHhhhhhhCCCcCCCcchHHHHHHHHHhhcCHHHHHHHHhcCChhhhhhcHH-HHHHHHHHHH
Q 029202 7 TDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAE-VVAAWKIGQH 85 (197)
Q Consensus 7 ~~~~~~~~~~~l~~~~e~~El~~~~~g~~~~~~~py~~~Ll~~L~~ndl~~ar~l~kRiP~~~~~~~~~-l~~~~~l~~~ 85 (197)
..+...|+|++-+..+++.--. .|+....++. +-.+=.+|+-.+|...|...++++=..-. .++. ......++.+
T Consensus 23 ~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~a--~~~lg~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~ 98 (261)
T 3qky_A 23 MEFYNQGKYDRAIEYFKAVFTY-GRTHEWAADA--QFYLARAYYQNKEYLLAASEYERFIQIYQ-IDPRVPQAEYERAMC 98 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHGGG-CSCSTTHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh-CCCCcchHHH--HHHHHHHHHHhCcHHHHHHHHHHHHHHCC-CCchhHHHHHHHHHH
Confidence 4567889999999999887543 2322211122 22233457778999999988887522111 1122 2345566766
Q ss_pred HH---------cCChHHHHHHhh
Q 029202 86 LW---------TRDYAGVYDAIR 99 (197)
Q Consensus 86 L~---------~~~y~~v~~~l~ 99 (197)
.. .|+|.+....++
T Consensus 99 ~~~~~~~~~~~~~~~~~A~~~~~ 121 (261)
T 3qky_A 99 YYKLSPPYELDQTDTRKAIEAFQ 121 (261)
T ss_dssp HHHHCCCTTSCCHHHHHHHHHHH
T ss_pred HHHhcccccccchhHHHHHHHHH
Confidence 65 577777655443
No 112
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=25.83 E-value=1.2e+02 Score=21.44 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccc-CHHHHHHHcCCCH---HHHHHHHHhcCCeec
Q 029202 112 AAFSELYTKRMFQLLLSAYSTI-STQDTALFLGMNE---DDAAYYVQQQGWTLD 161 (197)
Q Consensus 112 ~~l~~~iR~~i~~lis~AY~sI-s~~~~a~~Lgls~---~e~~~~~~~~GW~~d 161 (197)
..+.+.+|+.|..---+.=..+ +...+|..+|+|. -++.....+.|+-.-
T Consensus 7 ~~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~ 60 (129)
T 2ek5_A 7 KQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYK 60 (129)
T ss_dssp HHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 3445555555554333344567 8999999999995 566666777899663
No 113
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=25.70 E-value=1.4e+02 Score=24.92 Aligned_cols=84 Identities=12% Similarity=0.111 Sum_probs=52.3
Q ss_pred hHHHHHHHHHhhcCHHHHHHHHhcCChhhh--------------------hhcHHHHHHHHHHHHHHcCChHHHHHHhhC
Q 029202 41 PYVIHLLGYYYVNDINSARFLWKSIPSTIK--------------------DSRAEVVAAWKIGQHLWTRDYAGVYDAIRG 100 (197)
Q Consensus 41 py~~~Ll~~L~~ndl~~ar~l~kRiP~~~~--------------------~~~~~l~~~~~l~~~L~~~~y~~v~~~l~~ 100 (197)
+.+.-++-||+.+++..|+.++...-..+. .+.|.|..++-|...+..++.+ +|..+..
T Consensus 190 f~~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~p~~pllnF~~lLl~t~e~~~~~-lF~~L~~ 268 (312)
T 2wpv_A 190 FFSRLVFNYLFISNISFAHESKDIFLERFIEKFHPKYEKIDKNGYEIVFFEDYSDLNFLQLLLITCQTKDKS-YFLNLKN 268 (312)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHCCCEEEEEETTEEEEEESSCHHHHHHHHHHHHHHHTCHH-HHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcccccccccccccCCCCCCCCccHHHHHHHHHHHhcCCHH-HHHHHHH
Confidence 356669999999999999998774432221 1348899999999988887743 4555543
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCH
Q 029202 101 FDWSQEAQALVAAFSELYTKRMFQLLLSAYSTIST 135 (197)
Q Consensus 101 ~~ws~~~~~~i~~l~~~iR~~i~~lis~AY~sIs~ 135 (197)
.|++.++. =.+.++-|..-|=.|+.
T Consensus 269 -----~Y~~~L~~-----~~~~L~~Ig~~yFgi~~ 293 (312)
T 2wpv_A 269 -----HYLDFSQA-----YKSELEFLGQEYFNIVA 293 (312)
T ss_dssp -----HCHHHHHH-----THHHHHHHHHHHHCCC-
T ss_pred -----HHHHHHHH-----HHHHHHHHHHHhcCCCC
Confidence 33333331 13444455555555544
No 114
>2zp2_A Kinase A inhibitor; KIPI, histidine kinase inhibitor, ATP-binding, nucleotide- binding, protein kinase inhibitor, sporulation; 3.01A {Bacillus subtilis}
Probab=25.57 E-value=54 Score=24.32 Aligned_cols=30 Identities=3% Similarity=0.006 Sum_probs=26.1
Q ss_pred cCHHHHHHHcCCCHHHHHHHHHhcCCeecC
Q 029202 133 ISTQDTALFLGMNEDDAAYYVQQQGWTLDP 162 (197)
Q Consensus 133 Is~~~~a~~Lgls~~e~~~~~~~~GW~~d~ 162 (197)
-.++.+|+..|||.+|+++.-.+.-|.+-.
T Consensus 15 ~DL~~vA~~~gls~~evi~~h~~~~y~V~~ 44 (141)
T 2zp2_A 15 PDLEEVAKINQLSPEEVIDIHTNGEYVVYM 44 (141)
T ss_dssp TTHHHHHHHTTCCHHHHHHHHTTCCEEEEC
T ss_pred CCHHHHHHHhCcCHHHHHHHHhCCCeEEEE
Confidence 568899999999999999998888888743
No 115
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=25.44 E-value=1.2e+02 Score=18.42 Aligned_cols=36 Identities=22% Similarity=0.209 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhcccCHHHHHHHcCCCHHHHHHHHHhcC
Q 029202 119 TKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQG 157 (197)
Q Consensus 119 R~~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~~~~~~G 157 (197)
|+-|...+.++ - +...+|..||++..-+-.-.++.|
T Consensus 23 r~~I~~aL~~~-g--n~~~aA~~LGIsr~tL~rklkk~g 58 (61)
T 1g2h_A 23 AQVLKLFYAEY-P--STRKLAQRLGVSHTAIANKLKQYG 58 (61)
T ss_dssp HHHHHHHHHHS-C--SHHHHHHHTTSCTHHHHHHHHTTT
T ss_pred HHHHHHHHHHh-C--CHHHHHHHhCCCHHHHHHHHHHhC
Confidence 44455555555 3 677999999999877766666544
No 116
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=25.23 E-value=86 Score=21.08 Aligned_cols=53 Identities=11% Similarity=0.124 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHc-CCCHHH---HHHHHHhcCCee
Q 029202 106 EAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFL-GMNEDD---AAYYVQQQGWTL 160 (197)
Q Consensus 106 ~~~~~i~~l~~~iR~~i~~lis~AY~sIs~~~~a~~L-gls~~e---~~~~~~~~GW~~ 160 (197)
++...+..+.+..|-.|+..+. ...++..+++..+ |++..- ..+-..+.||-.
T Consensus 14 ~~~~~l~~l~~~~~~~IL~~L~--~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~ 70 (107)
T 2fsw_A 14 PVRKSMQIFAGKWTLLIIFQIN--RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIK 70 (107)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHT--TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHcCccHHHHHHHHH--hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEE
Confidence 3455566666667777887775 5789999999999 599654 455566789986
No 117
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=25.21 E-value=88 Score=16.85 Aligned_cols=34 Identities=6% Similarity=0.057 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhcccCHHHHHHHcCCCHHHHHHHHH
Q 029202 118 YTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQ 154 (197)
Q Consensus 118 iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~~~~ 154 (197)
.|..+..+. ..-.+..++|..||++..-+..++.
T Consensus 10 ~~~~i~~~~---~~g~s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 10 ERAQLDVMK---LLNVSLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp HHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 455565554 3457899999999999887777765
No 118
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=24.52 E-value=1.4e+02 Score=20.84 Aligned_cols=38 Identities=8% Similarity=0.135 Sum_probs=30.4
Q ss_pred HHHHHHHHhhcccCHHHHHHHcCCCH---HHHHHHHHhcCCee
Q 029202 121 RMFQLLLSAYSTISTQDTALFLGMNE---DDAAYYVQQQGWTL 160 (197)
Q Consensus 121 ~i~~lis~AY~sIs~~~~a~~Lgls~---~e~~~~~~~~GW~~ 160 (197)
.++..+ ....++..++|..+|++. ..+++-..++||-.
T Consensus 42 ~iL~~l--~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~ 82 (151)
T 3kp7_A 42 HVLNML--SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVK 82 (151)
T ss_dssp HHHHHH--HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEE
T ss_pred HHHHHH--HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 566666 678999999999999985 55666677789987
No 119
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=24.43 E-value=1.3e+02 Score=21.24 Aligned_cols=53 Identities=13% Similarity=0.162 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHc-CCCHHH---HHHHHHhcCCee
Q 029202 106 EAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFL-GMNEDD---AAYYVQQQGWTL 160 (197)
Q Consensus 106 ~~~~~i~~l~~~iR~~i~~lis~AY~sIs~~~~a~~L-gls~~e---~~~~~~~~GW~~ 160 (197)
++...+..+.+..|-.|+..+. ...++..++++.+ |++..- ..+-..+.|+-.
T Consensus 24 ~~~~~l~~l~~~w~l~IL~~L~--~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~ 80 (131)
T 1yyv_A 24 PSREVLKHVTSRWGVLILVALR--DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLN 80 (131)
T ss_dssp THHHHHHHHHSHHHHHHHHHGG--GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEE
T ss_pred CHHHHHHHHcCCcHHHHHHHHH--cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEE
Confidence 4566777788888888888875 5789999999999 799744 455556679876
No 120
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.38 E-value=53 Score=23.25 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=28.1
Q ss_pred CCcchHHHHHccccHHHHHHHHhHHhhhhh
Q 029202 1 MDFSPLTDALASKSYEKIADICDDLMLKVA 30 (197)
Q Consensus 1 ~~~~~i~~~~~~~~~~~l~~~~e~~El~~~ 30 (197)
||+..|+.-+..+.|..+-++..+..|-..
T Consensus 48 mdL~tI~~kl~~~~Y~s~~ef~~D~~li~~ 77 (121)
T 2d9e_A 48 MDFFTMKQNLEAYRYLNFDDFEEDFNLIVS 77 (121)
T ss_dssp CCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999999999863
No 121
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=24.36 E-value=1.1e+02 Score=21.27 Aligned_cols=35 Identities=11% Similarity=0.047 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhcccCHHHHHHHcCCCHHHHHHHHHh
Q 029202 120 KRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQ 155 (197)
Q Consensus 120 ~~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~~~~~ 155 (197)
+++...|.. ...++++++|..+|+|..-+....++
T Consensus 82 ~~a~~~i~~-~~~~sl~~lA~~~g~S~~~f~r~Fk~ 116 (133)
T 1u8b_A 82 THACRLLEQ-ETPVTLEALADQVAMSPFHLHRLFKA 116 (133)
T ss_dssp HHHHHHTCS-SSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 345555655 78899999999999998777666554
No 122
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=24.32 E-value=1.2e+02 Score=18.25 Aligned_cols=18 Identities=22% Similarity=0.137 Sum_probs=11.2
Q ss_pred hcccCHHHHHHHcCCCHH
Q 029202 130 YSTISTQDTALFLGMNED 147 (197)
Q Consensus 130 Y~sIs~~~~a~~Lgls~~ 147 (197)
+...+..++|..||+|..
T Consensus 24 ~~g~s~~eIA~~l~is~~ 41 (74)
T 1fse_A 24 VQDKTTKEIASELFISEK 41 (74)
T ss_dssp TTTCCHHHHHHHHTSCHH
T ss_pred HcCCCHHHHHHHHCCCHH
Confidence 344566677777777653
No 123
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=24.11 E-value=1.2e+02 Score=30.09 Aligned_cols=153 Identities=10% Similarity=0.050 Sum_probs=91.9
Q ss_pred HHHHHccccHHHHHHHHhHHhhhhhhCCCcCCCcchHHHHHHHHHhhcCHHHHHHHHhcCCh-----hhhhhcHHHHHHH
Q 029202 6 LTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPS-----TIKDSRAEVVAAW 80 (197)
Q Consensus 6 i~~~~~~~~~~~l~~~~e~~El~~~~~g~~~~~~~py~~~Ll~~L~~ndl~~ar~l~kRiP~-----~~~~~~~~l~~~~ 80 (197)
|..+...|+.++-....++..-- ...|.. |++.-|..++-.|--.+++.+|..+++.+-. ++..-+..|..
T Consensus 134 IdglcK~G~leeA~~Lf~eM~~m-~~kG~~-PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~g-- 209 (1134)
T 3spa_A 134 FKCCLLTDQLPLAHHLLVVHHGQ-RQKRKL-LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC-- 209 (1134)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHS-HHHHTT-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH--
T ss_pred HHHHHhCCCHHHHHHHHHHHHHH-hhcCCC-CCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH--
Confidence 45667778888877777765422 113442 5554599999999999999999999997632 22223333332
Q ss_pred HHHHHHHcCCh-H---HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHH--------------HHHH--
Q 029202 81 KIGQHLWTRDY-A---GVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQ--------------DTAL-- 140 (197)
Q Consensus 81 ~l~~~L~~~~y-~---~v~~~l~~~~ws~~~~~~i~~l~~~iR~~i~~lis~AY~sIs~~--------------~~a~-- 140 (197)
+++. |.. . +++..+......++....-..|...=|+.+++||.+.....+++ ++-+
T Consensus 210 -lcK~---G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 210 -MGRQ---DQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp -HHHH---TCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred -HHhC---CCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 2221 322 2 45555544344444444444467778999999999887766654 2222
Q ss_pred ------HcCCCHHHHHHHHHhcCCeecCCCceE
Q 029202 141 ------FLGMNEDDAAYYVQQQGWTLDPASRML 167 (197)
Q Consensus 141 ------~Lgls~~e~~~~~~~~GW~~d~~~~~~ 167 (197)
-|+++-+++.+..++ .+.++-++.+.
T Consensus 286 ~~~s~pk~~~~~~~L~~~~~~-Ql~~E~~~~v~ 317 (1134)
T 3spa_A 286 GRVSYPKLHLPLKTLQCLFEK-QLHMELASRVC 317 (1134)
T ss_dssp SCCCCCCCSSCHHHHHHHHHH-HHHHHHHCEEE
T ss_pred CCCcCccccCCHHHHHHHHHH-HHHHHHcCeeE
Confidence 356777888777653 33333334443
No 124
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=23.90 E-value=99 Score=22.34 Aligned_cols=40 Identities=10% Similarity=0.078 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcccCHHHHHHHcCCCHHH---HHHHHHhcCCee
Q 029202 121 RMFQLLLSAYSTISTQDTALFLGMNEDD---AAYYVQQQGWTL 160 (197)
Q Consensus 121 ~i~~lis~AY~sIs~~~~a~~Lgls~~e---~~~~~~~~GW~~ 160 (197)
.++..+......+++.++|..+|++..- +++-..++||-.
T Consensus 57 ~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~ 99 (166)
T 3deu_A 57 VTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLIS 99 (166)
T ss_dssp HHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEE
Confidence 5666666656779999999999999654 455566789987
No 125
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=23.63 E-value=24 Score=23.03 Aligned_cols=37 Identities=11% Similarity=0.093 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhh---cccCHHHHHHHc-CCCHHHHHHHHHh
Q 029202 119 TKRMFQLLLSAY---STISTQDTALFL-GMNEDDAAYYVQQ 155 (197)
Q Consensus 119 R~~i~~lis~AY---~sIs~~~~a~~L-gls~~e~~~~~~~ 155 (197)
|.+|++...+-. ..+.++.+|+.. |+|..|+...|.+
T Consensus 3 R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~e 43 (82)
T 2dzn_B 3 RRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQE 43 (82)
T ss_dssp -----------CEECTTCCSTTTTTSSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 555665555443 356777777777 9999888887764
No 126
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=23.58 E-value=1.3e+02 Score=20.65 Aligned_cols=42 Identities=10% Similarity=0.210 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhcccCHHHHHHHcCCCHHH---HHHHHHhcCCeec
Q 029202 120 KRMFQLLLSAYSTISTQDTALFLGMNEDD---AAYYVQQQGWTLD 161 (197)
Q Consensus 120 ~~i~~lis~AY~sIs~~~~a~~Lgls~~e---~~~~~~~~GW~~d 161 (197)
.+++.++..+-..++..++|..+|++..- ..+-..+.||-.-
T Consensus 29 ~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r 73 (152)
T 1ku9_A 29 GAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRK 73 (152)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 35666664345789999999999999644 4555667899763
No 127
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=23.34 E-value=1.2e+02 Score=21.63 Aligned_cols=44 Identities=9% Similarity=0.088 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHHHHH---HHhcCCee
Q 029202 116 ELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 160 (197)
Q Consensus 116 ~~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 160 (197)
+..+.+|+.++.. ...++..++|..+|+|..-+... ..+.|+-.
T Consensus 6 d~~~~~iL~~L~~-~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 52 (150)
T 2w25_A 6 DDIDRILVRELAA-DGRATLSELATRAGLSVSAVQSRVRRLESRGVVQ 52 (150)
T ss_dssp CHHHHHHHHHHHH-CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3456678887754 46899999999999998665444 34568863
No 128
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=23.32 E-value=90 Score=23.84 Aligned_cols=38 Identities=5% Similarity=0.114 Sum_probs=26.9
Q ss_pred ccCHHHHHHHcCCCHHHH---HHHHHhcCCeecCCCceEee
Q 029202 132 TISTQDTALFLGMNEDDA---AYYVQQQGWTLDPASRMLTV 169 (197)
Q Consensus 132 sIs~~~~a~~Lgls~~e~---~~~~~~~GW~~d~~~~~~~P 169 (197)
.++..++|.++|++.+-+ .+-.++.|+---..+.+.+.
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~i~i~ 217 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKIIVY 217 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEEES
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCCCEEEEe
Confidence 578999999999997554 44455679975444555554
No 129
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=23.24 E-value=1.7e+02 Score=19.49 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHHHHHHHh
Q 029202 115 SELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQ 155 (197)
Q Consensus 115 ~~~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~~~~~ 155 (197)
.+...++|++.+..|=.=++..++|..+|++..|+.+...+
T Consensus 17 ~~d~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~ 57 (80)
T 2lnb_A 17 EGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYR 57 (80)
T ss_dssp HHHHHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 44567899999999999999999999999998887766553
No 130
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=23.17 E-value=1.7e+02 Score=20.29 Aligned_cols=35 Identities=11% Similarity=0.251 Sum_probs=28.6
Q ss_pred HHHHHHHHhhcccCHHHHHHHcCCCHHHHHHHHHh
Q 029202 121 RMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQ 155 (197)
Q Consensus 121 ~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~~~~~ 155 (197)
+..-.-..-+..+|..+++...|+|++++..+...
T Consensus 39 K~~VV~~v~~g~lS~~EAa~ry~Is~~ei~~W~r~ 73 (101)
T 2oa4_A 39 KIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSA 73 (101)
T ss_dssp HHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 44444556678999999999999999999988764
No 131
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=23.09 E-value=1.4e+02 Score=20.43 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=27.8
Q ss_pred HHHHHHHHhhcccCHHHHHHHcCCCHHH---HHHHHHhcCCee
Q 029202 121 RMFQLLLSAYSTISTQDTALFLGMNEDD---AAYYVQQQGWTL 160 (197)
Q Consensus 121 ~i~~lis~AY~sIs~~~~a~~Lgls~~e---~~~~~~~~GW~~ 160 (197)
.++..+... ..++..++|..+|++..- +++-..++||-.
T Consensus 41 ~iL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~ 82 (143)
T 3oop_A 41 SVLEGIEAN-EPISQKEIALWTKKDTPTVNRIVDVLLRKELIV 82 (143)
T ss_dssp HHHHHHHHH-SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHc-CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCee
Confidence 344444433 789999999999999654 455566789976
No 132
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=22.91 E-value=26 Score=24.87 Aligned_cols=30 Identities=27% Similarity=0.613 Sum_probs=28.0
Q ss_pred CCcchHHHHHccccHHHHHHHHhHHhhhhh
Q 029202 1 MDFSPLTDALASKSYEKIADICDDLMLKVA 30 (197)
Q Consensus 1 ~~~~~i~~~~~~~~~~~l~~~~e~~El~~~ 30 (197)
||++.|+.=+..|.|..+-+...+..|-..
T Consensus 49 MDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~ 78 (117)
T 2i7k_A 49 MDFSTMKEKIKNNDYQSIEELKDNFKLMCT 78 (117)
T ss_dssp CCHHHHHHHHTTTSCCSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999999999863
No 133
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=22.90 E-value=2.2e+02 Score=20.58 Aligned_cols=37 Identities=11% Similarity=0.232 Sum_probs=25.1
Q ss_pred ccCHHHHHHHcCCCHHHH---HHHHHhcCCeecCCCceEe
Q 029202 132 TISTQDTALFLGMNEDDA---AYYVQQQGWTLDPASRMLT 168 (197)
Q Consensus 132 sIs~~~~a~~Lgls~~e~---~~~~~~~GW~~d~~~~~~~ 168 (197)
.++..++|+|+|++.+-+ .+-.++.|+---..+.+.+
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 206 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVV 206 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEeCCCEEEE
Confidence 578899999999997554 4445567985543344443
No 134
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.89 E-value=72 Score=18.84 Aligned_cols=20 Identities=5% Similarity=0.052 Sum_probs=15.9
Q ss_pred cCCCHHHHHHHHHhcCCeec
Q 029202 142 LGMNEDDAAYYVQQQGWTLD 161 (197)
Q Consensus 142 Lgls~~e~~~~~~~~GW~~d 161 (197)
+||+.++++......||-++
T Consensus 18 MGF~~~~a~~AL~~~~~n~e 37 (49)
T 1ify_A 18 MGYERERVVAALRASYNNPH 37 (49)
T ss_dssp TTCCHHHHHHHHHTTTSCSH
T ss_pred cCCCHHHHHHHHHHhCCCHH
Confidence 38888888888888888664
No 135
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=22.69 E-value=1.2e+02 Score=22.52 Aligned_cols=45 Identities=13% Similarity=0.218 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHHHHHH---HhcCCee
Q 029202 115 SELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYV---QQQGWTL 160 (197)
Q Consensus 115 ~~~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~~~---~~~GW~~ 160 (197)
.+.++.+|+.++.+- ..++..++|+.+|+|..-+...+ .+.|+-.
T Consensus 15 ld~~d~~IL~~L~~~-~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~ 62 (171)
T 2ia0_A 15 LDDLDRNILRLLKKD-ARLTISELSEQLKKPESTIHFRIKKLQERGVIE 62 (171)
T ss_dssp CCHHHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 345566788887653 57999999999999986665544 4568864
No 136
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=22.66 E-value=1.3e+02 Score=20.13 Aligned_cols=37 Identities=8% Similarity=0.058 Sum_probs=25.4
Q ss_pred HHHHHHHHhhcccCHHHHHHHcCCCHHHHHHH---HHhcCC
Q 029202 121 RMFQLLLSAYSTISTQDTALFLGMNEDDAAYY---VQQQGW 158 (197)
Q Consensus 121 ~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW 158 (197)
+|.+.+ +....++++++|..||+|+.-+... ..++|-
T Consensus 6 ~Il~~L-~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~ 45 (87)
T 2k02_A 6 EVRDML-ALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGK 45 (87)
T ss_dssp HHHHHH-HHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHH-HHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 344555 3468999999999999998655443 334564
No 137
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=22.53 E-value=1.4e+02 Score=20.23 Aligned_cols=34 Identities=9% Similarity=0.081 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhcccCHHHHHHHcCCCHHHHHHHHH
Q 029202 119 TKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQ 154 (197)
Q Consensus 119 R~~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~~~~ 154 (197)
+.+|+.++.... +++.++|..+|+|..=+.....
T Consensus 9 ~~~I~~~l~~~~--~ti~dlA~~~gVS~~TVsR~L~ 42 (93)
T 2l0k_A 9 TIKIGKYIVETK--KTVRVIAKEFGVSKSTVHKDLT 42 (93)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHCCCHHHHHHHHc
Confidence 456777776654 8999999999999765555443
No 138
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.50 E-value=3.4e+02 Score=23.20 Aligned_cols=85 Identities=15% Similarity=0.095 Sum_probs=56.9
Q ss_pred HccccHHHHHHHHhHHhhhhhhCCCcCC----CcchHHHHHHHHHhhcCHHHHHHHHhcCChhhhh--hcHHHHHHHHH-
Q 029202 10 LASKSYEKIADICDDLMLKVAAEGIVFQ----DEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKD--SRAEVVAAWKI- 82 (197)
Q Consensus 10 ~~~~~~~~l~~~~e~~El~~~~~g~~~~----~~~py~~~Ll~~L~~ndl~~ar~l~kRiP~~~~~--~~~~l~~~~~l- 82 (197)
-+.|+|.+.+..+.++-.++ .|.... ++ |-.-+-.|+..+|...|+.+.+++-..... .+|.++.-...
T Consensus 148 e~~g~~~eA~~iL~~l~~Et--~~~~~~~~kve~--~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~ 223 (445)
T 4b4t_P 148 KEEGKIDEAADILCELQVET--YGSMEMSEKIQF--ILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNL 223 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHH--CSSSCHHHHHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHH--HhcccHHHHHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHH
Confidence 45789999999999998885 344321 33 666678899999999999999997533322 24555544322
Q ss_pred --HHHHHcCChHHHHHHh
Q 029202 83 --GQHLWTRDYAGVYDAI 98 (197)
Q Consensus 83 --~~~L~~~~y~~v~~~l 98 (197)
--++.+++|-.+++..
T Consensus 224 ~~~~~~~e~~y~~a~~~y 241 (445)
T 4b4t_P 224 LVKISLHKREYLEVAQYL 241 (445)
T ss_dssp HHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHH
Confidence 2234577887765543
No 139
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.41 E-value=59 Score=20.71 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=23.4
Q ss_pred HHHHHHHcC-CCHHHHHHHHHhcCCeecCC
Q 029202 135 TQDTALFLG-MNEDDAAYYVQQQGWTLDPA 163 (197)
Q Consensus 135 ~~~~a~~Lg-ls~~e~~~~~~~~GW~~d~~ 163 (197)
+..++...| -+.+.+..+....+|.++..
T Consensus 22 i~qF~~ITg~~d~~~A~~~Le~~~WnLe~A 51 (67)
T 2dam_A 22 LLQFQDLTGIESMDQCRHTLEQHNWNIEAA 51 (67)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHcCCCHHHH
Confidence 566788889 56888999999999998754
No 140
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=22.28 E-value=1.3e+02 Score=17.83 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=28.8
Q ss_pred CHHHHHHHcCCCHHHHHHHHHh-cCCee--cCCCceEeec
Q 029202 134 STQDTALFLGMNEDDAAYYVQQ-QGWTL--DPASRMLTVK 170 (197)
Q Consensus 134 s~~~~a~~Lgls~~e~~~~~~~-~GW~~--d~~~~~~~P~ 170 (197)
+...+|..||++..-+-.+... ++-++ .+.|..+.+.
T Consensus 15 s~~~~A~~lgis~~~vs~~~~~~~~~~l~~t~~G~~~~~~ 54 (67)
T 2pij_A 15 TQSALAAALGVNQSAISQMVRAGRSIEITLYEDGRVEANE 54 (67)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTTCCEEEEECTTSCEEEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCCCeEEccCceEehHh
Confidence 8899999999998888887764 57777 6677666543
No 141
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=21.87 E-value=2.3e+02 Score=20.49 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhh-------------cccCHHHHHHHcCCCHHHH---HHHHHhcCCeecCCCceEe
Q 029202 117 LYTKRMFQLLLSAY-------------STISTQDTALFLGMNEDDA---AYYVQQQGWTLDPASRMLT 168 (197)
Q Consensus 117 ~iR~~i~~lis~AY-------------~sIs~~~~a~~Lgls~~e~---~~~~~~~GW~~d~~~~~~~ 168 (197)
..++|++..+-.-. -.++..++|.|+|++.+-+ .+-.++.|+---..+.+.+
T Consensus 118 ~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 185 (202)
T 2zcw_A 118 RLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELAREGYIRSGYGKIQL 185 (202)
T ss_dssp CHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEE
Confidence 45566666555422 2378899999999997554 4445567985432344444
No 142
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=21.86 E-value=1.4e+02 Score=22.42 Aligned_cols=41 Identities=12% Similarity=0.123 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHhhc------ccCHHHHHHHcCCCHHHHHHHHH
Q 029202 114 FSELYTKRMFQLLLSAYS------TISTQDTALFLGMNEDDAAYYVQ 154 (197)
Q Consensus 114 l~~~iR~~i~~lis~AY~------sIs~~~~a~~Lgls~~e~~~~~~ 154 (197)
|...++..+..++.+-|. .+++.++|..||++..=+-.+..
T Consensus 24 yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 24 LTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp SCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 334455555556666655 58999999999999765554433
No 143
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=21.84 E-value=1.6e+02 Score=20.45 Aligned_cols=52 Identities=15% Similarity=0.232 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc-CHHHHHHHcCCCH---HHHHHHHHhcCCeec
Q 029202 110 LVAAFSELYTKRMFQLLLSAYSTI-STQDTALFLGMNE---DDAAYYVQQQGWTLD 161 (197)
Q Consensus 110 ~i~~l~~~iR~~i~~lis~AY~sI-s~~~~a~~Lgls~---~e~~~~~~~~GW~~d 161 (197)
+-..+.+.+|+.|..-.-..=..+ |...+|..+|+|. -++.....+.|+-.-
T Consensus 14 ~~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~ 69 (125)
T 3neu_A 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYA 69 (125)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEE
Confidence 334555666666654433445677 4999999999995 556666777899764
No 144
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=21.83 E-value=26 Score=24.43 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=27.8
Q ss_pred CCcchHHHHHccccHHHHHHHHhHHhhhhh
Q 029202 1 MDFSPLTDALASKSYEKIADICDDLMLKVA 30 (197)
Q Consensus 1 ~~~~~i~~~~~~~~~~~l~~~~e~~El~~~ 30 (197)
||++-|+.=+..|.|..+-+...+..|-..
T Consensus 48 mdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~ 77 (112)
T 3d7c_A 48 IDLKTMTERLRSRYYVTRKLFVADLQRVIA 77 (112)
T ss_dssp CCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHcCCCCcCHHHHHHHHHHHHH
Confidence 899999999999999999999999998863
No 145
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=21.70 E-value=1.7e+02 Score=18.87 Aligned_cols=21 Identities=33% Similarity=0.327 Sum_probs=17.3
Q ss_pred hhcccCHHHHHHHcCCCHHHH
Q 029202 129 AYSTISTQDTALFLGMNEDDA 149 (197)
Q Consensus 129 AY~sIs~~~~a~~Lgls~~e~ 149 (197)
-+.-.+...+|..||++..-+
T Consensus 50 ~~~g~s~~eIA~~lgis~~tV 70 (92)
T 3hug_A 50 YYRGWSTAQIATDLGIAEGTV 70 (92)
T ss_dssp HTSCCCHHHHHHHHTSCHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHH
Confidence 477889999999999997544
No 146
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=21.52 E-value=1.9e+02 Score=19.47 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=28.4
Q ss_pred HHHHHHHHhhcccCHHHHHHHcCCCHHH---HHHHHHhcCCee
Q 029202 121 RMFQLLLSAYSTISTQDTALFLGMNEDD---AAYYVQQQGWTL 160 (197)
Q Consensus 121 ~i~~lis~AY~sIs~~~~a~~Lgls~~e---~~~~~~~~GW~~ 160 (197)
+++..+.. ...++..++|..+|++..- ..+-..+.||-.
T Consensus 35 ~iL~~l~~-~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~ 76 (142)
T 3bdd_A 35 SILQTLLK-DAPLHQLALQERLQIDRAAVTRHLKLLEESGYII 76 (142)
T ss_dssp HHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 45555544 4679999999999999654 455556689986
No 147
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=21.34 E-value=1.3e+02 Score=24.37 Aligned_cols=116 Identities=7% Similarity=-0.017 Sum_probs=68.9
Q ss_pred HHHHHHHHHhhcCHHHHHHHHhcCCh---------hhhhh---cHHHHHHHHHHHHHHcCChHHHHHHhhCCC-CcHHHH
Q 029202 42 YVIHLLGYYYVNDINSARFLWKSIPS---------TIKDS---RAEVVAAWKIGQHLWTRDYAGVYDAIRGFD-WSQEAQ 108 (197)
Q Consensus 42 y~~~Ll~~L~~ndl~~ar~l~kRiP~---------~~~~~---~~~l~~~~~l~~~L~~~~y~~v~~~l~~~~-ws~~~~ 108 (197)
-+..+++.+..+|+..+..+++.+-. +.... ...-..++.+..++..||..+++..++... -+++..
T Consensus 165 ~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~~~~if~l~~ai~~~d~~~al~~l~~l~~~g~~~~ 244 (343)
T 1jr3_D 165 AANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRLEGSEPV 244 (343)
T ss_dssp HHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHCCCCHHHHHHHHTTSCHHHHHHHHTSSTTTTCCHH
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCcHH
Confidence 56778888899999999987664321 11000 011124678899999999999999887521 234456
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc-CHHHHHHHcCCCHHHHHHHHHh-cCCee
Q 029202 109 ALVAAFSELYTKRMFQLLLSAYSTI-STQDTALFLGMNEDDAAYYVQQ-QGWTL 160 (197)
Q Consensus 109 ~~i~~l~~~iR~~i~~lis~AY~sI-s~~~~a~~Lgls~~e~~~~~~~-~GW~~ 160 (197)
.++..+...+|.-..- +....- +.+.+++.+|+.+.....+... ++|+.
T Consensus 245 ~il~~l~~~~r~l~~~---~~~~~~g~~~~i~~~l~i~~~~~~~~~~~~~~~s~ 295 (343)
T 1jr3_D 245 ILLRTLQRELLLLVNL---KRQSAHTPLRALFDKHRVWQNRRGMMGEALNRLSQ 295 (343)
T ss_dssp HHHHHHHHHHHHHHHH---HTCSSSSCHHHHHHHHTCCSSHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHH---HHHHhCCCHHHHHHHcCCCHHHHHHHHHHHHcCCH
Confidence 6677777777653321 111111 5677777778765433333221 35554
No 148
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=21.26 E-value=1.6e+02 Score=18.45 Aligned_cols=35 Identities=3% Similarity=0.244 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhcccCHHHHHHHcCCCHHHHHHHHH
Q 029202 120 KRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQ 154 (197)
Q Consensus 120 ~~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~~~~ 154 (197)
+++++-|..+=--|.++.+++.+|++.+++.....
T Consensus 13 ~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~Lr 47 (59)
T 2xvc_A 13 RELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLE 47 (59)
T ss_dssp HHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHH
Confidence 35566667777788999999999999999877654
No 149
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=21.22 E-value=1.8e+02 Score=20.30 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=28.9
Q ss_pred HHHHHHHHhhcccCHHHHHHHcCCCHHH---HHHHHHhcCCeec
Q 029202 121 RMFQLLLSAYSTISTQDTALFLGMNEDD---AAYYVQQQGWTLD 161 (197)
Q Consensus 121 ~i~~lis~AY~sIs~~~~a~~Lgls~~e---~~~~~~~~GW~~d 161 (197)
+++..+.. ...++..++|..+|++..- +++-..++||-.-
T Consensus 53 ~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r 95 (162)
T 2fa5_A 53 RVITILAL-YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRR 95 (162)
T ss_dssp HHHHHHHH-STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEee
Confidence 44555544 5689999999999999654 4555666899873
No 150
>2pv4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.95A {Shewanella amazonensis} SCOP: a.286.1.1
Probab=21.15 E-value=1.4e+02 Score=22.10 Aligned_cols=23 Identities=9% Similarity=0.232 Sum_probs=18.7
Q ss_pred HHhhcCHHHHHHHHhcCChhhhh
Q 029202 49 YYYVNDINSARFLWKSIPSTIKD 71 (197)
Q Consensus 49 ~L~~ndl~~ar~l~kRiP~~~~~ 71 (197)
-|+.+.=..+|.-|.-+|.+.+.
T Consensus 44 elled~e~~f~~aWdaLPaSAqn 66 (145)
T 2pv4_A 44 ELLADRDGRFTRAWDQLPDSASS 66 (145)
T ss_dssp HHHHTTTCHHHHHHHHSCHHHHT
T ss_pred HHHHhhhHHHHHHHHhCcHHHHh
Confidence 36677778899999999987765
No 151
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=20.95 E-value=2e+02 Score=21.45 Aligned_cols=38 Identities=16% Similarity=0.085 Sum_probs=25.3
Q ss_pred ccCHHHHHHHcCCCHHH---HHHHHHhcCCeecCCCceEee
Q 029202 132 TISTQDTALFLGMNEDD---AAYYVQQQGWTLDPASRMLTV 169 (197)
Q Consensus 132 sIs~~~~a~~Lgls~~e---~~~~~~~~GW~~d~~~~~~~P 169 (197)
.++..++|+|||++.+- +.+-.++.|+---..+.+.+.
T Consensus 186 ~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~~~~~i~I~ 226 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNISKTLNELQDNGLIELHRKEILIP 226 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEETTEEEES
T ss_pred cCCHHHHHHHhCCChhHHHHHHHHHHHCCCEEecCCEEEEe
Confidence 47899999999999754 444456679843223444443
No 152
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=20.80 E-value=1.7e+02 Score=18.58 Aligned_cols=20 Identities=15% Similarity=0.115 Sum_probs=14.1
Q ss_pred hcccCHHHHHHHcCCCHHHH
Q 029202 130 YSTISTQDTALFLGMNEDDA 149 (197)
Q Consensus 130 Y~sIs~~~~a~~Lgls~~e~ 149 (197)
+.-.+..++|..||++..-+
T Consensus 34 ~~g~s~~eIA~~l~is~~tV 53 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTV 53 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHH
Confidence 56677888888888876433
No 153
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=20.79 E-value=1.5e+02 Score=19.46 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=9.8
Q ss_pred cccCHHHHHHHcCCCHH
Q 029202 131 STISTQDTALFLGMNED 147 (197)
Q Consensus 131 ~sIs~~~~a~~Lgls~~ 147 (197)
.-.+..++|..||++..
T Consensus 43 ~G~s~~eIA~~L~iS~~ 59 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKR 59 (90)
T ss_dssp TTCCHHHHHHHHTCCHH
T ss_pred cCCCHHHHHHHHCcCHH
Confidence 44456666666666653
No 154
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=20.75 E-value=1.3e+02 Score=20.84 Aligned_cols=40 Identities=10% Similarity=0.237 Sum_probs=28.9
Q ss_pred HHHHHHHHhhcccCHHHHHHHcCCCHHHH---HHHHHhcCCee
Q 029202 121 RMFQLLLSAYSTISTQDTALFLGMNEDDA---AYYVQQQGWTL 160 (197)
Q Consensus 121 ~i~~lis~AY~sIs~~~~a~~Lgls~~e~---~~~~~~~GW~~ 160 (197)
.++..+...-..++..++|..+|++..-+ ++-..++||-.
T Consensus 43 ~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~ 85 (150)
T 3fm5_A 43 SVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVV 85 (150)
T ss_dssp HHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEE
Confidence 45555554445689999999999997554 45556689986
No 155
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=20.75 E-value=72 Score=21.14 Aligned_cols=52 Identities=15% Similarity=0.218 Sum_probs=34.9
Q ss_pred chHHHHHccccHHHHHHHHhHHhhhhhhCCCcCCCcchHHHHHHHHHhhcCHHHHHHHHhcC
Q 029202 4 SPLTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSI 65 (197)
Q Consensus 4 ~~i~~~~~~~~~~~l~~~~e~~El~~~~~g~~~~~~~py~~~Ll~~L~~ndl~~ar~l~kRi 65 (197)
..|+.+|..-||+.|...+++.|=-. .|. | --.+..++..|-..-.-.-+++
T Consensus 9 k~ID~aIE~edyE~L~~LL~kREkLl--k~L--~------~e~l~~i~EkDk~R~~~Ik~~~ 60 (79)
T 2fzt_A 9 RKIDEAIEKEDYETLLSLLNKRKELM--EGL--P------KDKLSEILEKDRKRLEIIEKRK 60 (79)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHH--TTS--C------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH--hhC--c------HHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999988552 233 2 2355666666665544444443
No 156
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=20.62 E-value=2.2e+02 Score=21.12 Aligned_cols=35 Identities=17% Similarity=0.086 Sum_probs=23.0
Q ss_pred cCHHHHHHHcCCCHHHH---HHHHHhcCCeecCCCceEe
Q 029202 133 ISTQDTALFLGMNEDDA---AYYVQQQGWTLDPASRMLT 168 (197)
Q Consensus 133 Is~~~~a~~Lgls~~e~---~~~~~~~GW~~d~~~~~~~ 168 (197)
++..++|+|||++.+-+ .+-.++.|+..+ .+.+.+
T Consensus 179 ~t~~~iA~~lg~sr~tvsR~l~~L~~~gi~~~-~~~i~I 216 (237)
T 3fx3_A 179 YDKMLIAGRLGMKPESLSRAFSRLKAAGVTVK-RNHAEI 216 (237)
T ss_dssp SCTHHHHHHTTCCHHHHHHHHHHHGGGTEECC-TTEEEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCeEee-CCEEEE
Confidence 44789999999997554 444556798543 343444
No 157
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=20.59 E-value=28 Score=24.73 Aligned_cols=30 Identities=17% Similarity=0.506 Sum_probs=27.9
Q ss_pred CCcchHHHHHccccHHHHHHHHhHHhhhhh
Q 029202 1 MDFSPLTDALASKSYEKIADICDDLMLKVA 30 (197)
Q Consensus 1 ~~~~~i~~~~~~~~~~~l~~~~e~~El~~~ 30 (197)
||+..|+.-+..+.|..+.+.+.+..|-..
T Consensus 62 mdL~tI~~kl~~~~Y~~~~~f~~D~~li~~ 91 (124)
T 3mb4_A 62 MDMEKIRSHMMANKYQDIDSMVEDFVMMFN 91 (124)
T ss_dssp CCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999999999863
No 158
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=20.39 E-value=2.4e+02 Score=22.01 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=11.5
Q ss_pred hHHHHHccccHHHHHHHHhH
Q 029202 5 PLTDALASKSYEKIADICDD 24 (197)
Q Consensus 5 ~i~~~~~~~~~~~l~~~~e~ 24 (197)
.|+.+.-.|+|.+.+..++.
T Consensus 5 ~~~~~~~~g~y~~ai~~~~~ 24 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQR 24 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35555666666666655544
No 159
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=20.38 E-value=1.4e+02 Score=22.12 Aligned_cols=44 Identities=11% Similarity=0.243 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhhcccCHHHHHHHcCCCHHHHHHHH---HhcCCe
Q 029202 115 SELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYV---QQQGWT 159 (197)
Q Consensus 115 ~~~iR~~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~~~---~~~GW~ 159 (197)
.+..+.+|+.++.+- ..++..++|+.+|+|..-+..-+ .+.|+-
T Consensus 25 ld~~d~~IL~~L~~~-~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I 71 (171)
T 2e1c_A 25 LDEIDKKIIKILQND-GKAPLREISKITGLAESTIHERIRKLRESGVI 71 (171)
T ss_dssp CCHHHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCe
Confidence 355667888887653 68999999999999986654443 345664
No 160
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=20.36 E-value=2.2e+02 Score=23.81 Aligned_cols=75 Identities=9% Similarity=0.137 Sum_probs=49.9
Q ss_pred HHHHHccccHHHHHHHHhHHhhhhhhCCCcCCCcchHHHHHHHHHhhcCHHHHHHHHhcCChhhhhh-----cHHHHHHH
Q 029202 6 LTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDS-----RAEVVAAW 80 (197)
Q Consensus 6 i~~~~~~~~~~~l~~~~e~~El~~~~~g~~~~~~~py~~~Ll~~L~~ndl~~ar~l~kRiP~~~~~~-----~~~l~~~~ 80 (197)
+...++.|++.+++..|+.+ +... .. .+ -.|..++.+|.-.++-.+|.-..++.-..+... .|+++
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~-~~~~---P~-~E-~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~--- 248 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEAL-TFEH---PY-RE-PLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR--- 248 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-HHHS---TT-CH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH---
T ss_pred HHHHHHCCCHHHHHHHHHHH-HHhC---CC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH---
Confidence 45677889999999888876 3311 11 22 238999999999999999988777765544432 45566
Q ss_pred HHHHHHHcC
Q 029202 81 KIGQHLWTR 89 (197)
Q Consensus 81 ~l~~~L~~~ 89 (197)
.|.+.+..+
T Consensus 249 ~l~~~il~~ 257 (388)
T 2ff4_A 249 ALNERILRQ 257 (388)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 444454443
No 161
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=20.34 E-value=2e+02 Score=19.37 Aligned_cols=40 Identities=10% Similarity=0.184 Sum_probs=28.6
Q ss_pred HHHHHHHHhhcccCHHHHHHHcCCCHHH---HHHHHHhcCCeec
Q 029202 121 RMFQLLLSAYSTISTQDTALFLGMNEDD---AAYYVQQQGWTLD 161 (197)
Q Consensus 121 ~i~~lis~AY~sIs~~~~a~~Lgls~~e---~~~~~~~~GW~~d 161 (197)
.++..+.. ...++..++|..+|++..- +.+-..+.||-.-
T Consensus 33 ~iL~~l~~-~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~ 75 (138)
T 3bpv_A 33 ACLLRIHR-EPGIKQDELATFFHVDKGTIARTLRRLEESGFIER 75 (138)
T ss_dssp HHHHHHHH-STTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 44445544 3789999999999999654 4555667899863
No 162
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=20.26 E-value=1.5e+02 Score=20.73 Aligned_cols=50 Identities=20% Similarity=0.122 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccc-CHHHHHHHcCCCH---HHHHHHHHhcCCeec
Q 029202 112 AAFSELYTKRMFQLLLSAYSTI-STQDTALFLGMNE---DDAAYYVQQQGWTLD 161 (197)
Q Consensus 112 ~~l~~~iR~~i~~lis~AY~sI-s~~~~a~~Lgls~---~e~~~~~~~~GW~~d 161 (197)
..+.+.+|+.|..-.-+.=..+ +...+|..+|+|. -++.....+.|+-.-
T Consensus 14 ~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~ 67 (126)
T 3by6_A 14 LQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRT 67 (126)
T ss_dssp HHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4455666666654333334578 9999999999995 456666777899764
No 163
>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A
Probab=20.26 E-value=61 Score=25.13 Aligned_cols=40 Identities=18% Similarity=0.265 Sum_probs=34.4
Q ss_pred HHHHHHHHhhcccCHHHHHHHcCCCHHHHHHHHHhcCCeec
Q 029202 121 RMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLD 161 (197)
Q Consensus 121 ~i~~lis~AY~sIs~~~~a~~Lgls~~e~~~~~~~~GW~~d 161 (197)
..=..+..-|-+++-+++.. .|++.+|++++++++|=..+
T Consensus 52 nA~~iMr~~yPN~s~~~l~~-t~~~~~q~Iky~~s~G~~~~ 91 (183)
T 1pxv_A 52 NAHDIMRTLYPEVSEQDLPN-CATFPNQMIEYGKSQGRDIH 91 (183)
T ss_dssp CHHHHHHHHSTTSCTTTGGG-CCBCHHHHHHHHHHTTCCCE
T ss_pred CHHHHHHHHCCCCChhHHhh-cCCCHHHHHHHHHHcCcChh
Confidence 34567788999999999988 99999999999999987754
No 164
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=20.22 E-value=2e+02 Score=19.68 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=34.9
Q ss_pred HHhhcccCHHH--HHH-HcCCCHHHHHHHHHhcCCeecCCCceEeecCCCCCCCCCCChHHHHHHHHHH
Q 029202 127 LSAYSTISTQD--TAL-FLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQPLVTEQKLDPSKLQRLTEYV 192 (197)
Q Consensus 127 s~AY~sIs~~~--~a~-~Lgls~~e~~~~~~~~GW~~d~~~~~~~P~~~~~~~~~~~~~~qL~~LT~~v 192 (197)
.-=|++|..+. +.+ .+.+ +...++....||+.+++ .+++|... +..+|+++.+.+
T Consensus 38 e~KyR~Ir~~N~~f~~~v~~~--~G~~e~L~a~GF~~~~~-~l~lp~~~--------~~~~l~~~~d~l 95 (99)
T 2ccq_A 38 DEKYRSIRIGNTAFSTRLLPV--RGAVECLFEMGFEEGET-HLIFPKKA--------SVEQLQKIRDLI 95 (99)
T ss_dssp CGGGGEEETTCHHHHHHTTTS--TTHHHHHHHHTCEECSS-EEECCTTS--------CHHHHHHHHHHH
T ss_pred CcccceeecCCHHHHHHhcCC--ccHHHHHHHccceeCCC-eeecCCCC--------CHHHHHHHHHHH
Confidence 44588888776 333 3333 34577777889999854 46676432 456777776655
No 165
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=20.20 E-value=2.1e+02 Score=20.31 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHhhCCCCcHHHHHHHH
Q 029202 74 AEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVA 112 (197)
Q Consensus 74 ~~l~~~~~l~~~L~~~~y~~v~~~l~~~~ws~~~~~~i~ 112 (197)
.+...++.+.-.+-+|+|...+...+. ..++++.|..+
T Consensus 39 ~E~v~lIR~sSLmNrG~Yq~Al~l~~~-~c~pdlepw~A 76 (116)
T 2p58_C 39 EEAVQLIRLSSLMNRGDYASALQQGNK-LAYPDLEPWLA 76 (116)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHTT-SCCGGGHHHHH
T ss_pred HHHHHHHHHHHHHcchhHHHHHHhcCC-CCCchHHHHHH
Confidence 445555555556666666666666665 33444444443
No 166
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=20.18 E-value=52 Score=26.87 Aligned_cols=29 Identities=10% Similarity=0.056 Sum_probs=22.4
Q ss_pred HHHHHHHH-HhhcCHHHHHHHHhcCChhhh
Q 029202 42 YVIHLLGY-YYVNDINSARFLWKSIPSTIK 70 (197)
Q Consensus 42 y~~~Ll~~-L~~ndl~~ar~l~kRiP~~~~ 70 (197)
.+-.|..+ |..+.++.||-+.+|+|.+..
T Consensus 36 ~~n~l~R~FL~~gkl~AAr~l~~rlp~~~i 65 (270)
T 3cqc_A 36 QGNAIMRKFLASKKHEAAKEVFVKIPQDSI 65 (270)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCTTHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHCChHHH
Confidence 45555554 458999999999999997764
Done!