Query 029203
Match_columns 197
No_of_seqs 163 out of 1615
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 09:09:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029203.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029203hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.8 1.6E-21 3.4E-26 166.2 7.8 85 95-186 206-291 (348)
2 PF13639 zf-RING_2: Ring finge 99.7 1.2E-17 2.6E-22 102.7 1.8 44 125-169 1-44 (44)
3 PHA02929 N1R/p28-like protein; 99.5 8.7E-15 1.9E-19 119.9 4.8 77 93-173 147-227 (238)
4 COG5540 RING-finger-containing 99.5 1.2E-14 2.6E-19 120.7 3.6 51 123-174 322-373 (374)
5 PF12678 zf-rbx1: RING-H2 zinc 99.5 2.7E-14 5.9E-19 97.1 3.8 45 124-169 19-73 (73)
6 COG5243 HRD1 HRD ubiquitin lig 99.3 2.4E-12 5.1E-17 109.8 4.3 53 121-174 284-346 (491)
7 KOG0317 Predicted E3 ubiquitin 99.2 7.2E-12 1.6E-16 103.8 4.0 52 121-176 236-287 (293)
8 cd00162 RING RING-finger (Real 99.2 1.2E-11 2.6E-16 74.9 3.5 44 126-172 1-45 (45)
9 PLN03208 E3 ubiquitin-protein 99.2 1.4E-11 2.9E-16 97.6 4.4 51 121-175 15-81 (193)
10 PF13923 zf-C3HC4_2: Zinc fing 99.2 1.6E-11 3.5E-16 73.3 3.0 39 127-168 1-39 (39)
11 PF13920 zf-C3HC4_3: Zinc fing 99.1 2.6E-11 5.7E-16 76.2 2.9 46 124-173 2-48 (50)
12 KOG0823 Predicted E3 ubiquitin 99.1 6E-11 1.3E-15 95.6 3.1 51 121-175 44-97 (230)
13 PHA02926 zinc finger-like prot 99.1 8.8E-11 1.9E-15 94.3 3.4 52 121-172 167-229 (242)
14 KOG0320 Predicted E3 ubiquitin 99.1 8.3E-11 1.8E-15 91.2 3.2 56 120-177 127-182 (187)
15 PF12861 zf-Apc11: Anaphase-pr 99.0 1.7E-10 3.6E-15 79.8 3.2 49 123-172 20-81 (85)
16 KOG0802 E3 ubiquitin ligase [P 99.0 1.2E-10 2.6E-15 106.6 1.9 54 122-176 289-344 (543)
17 PF14634 zf-RING_5: zinc-RING 99.0 3.3E-10 7.2E-15 69.4 3.2 44 126-170 1-44 (44)
18 PF00097 zf-C3HC4: Zinc finger 99.0 2.8E-10 6E-15 68.4 2.6 39 127-168 1-41 (41)
19 smart00184 RING Ring finger. E 98.9 7.2E-10 1.6E-14 64.6 3.0 38 127-168 1-39 (39)
20 smart00504 Ubox Modified RING 98.9 1.9E-09 4.1E-14 70.6 4.1 47 125-175 2-48 (63)
21 PF15227 zf-C3HC4_4: zinc fing 98.9 1.4E-09 3E-14 66.0 2.6 38 127-168 1-42 (42)
22 TIGR00599 rad18 DNA repair pro 98.8 5.3E-09 1.2E-13 91.7 4.3 54 121-178 23-76 (397)
23 KOG1734 Predicted RING-contain 98.8 1.2E-09 2.6E-14 89.8 0.1 55 121-176 221-284 (328)
24 smart00744 RINGv The RING-vari 98.6 1.9E-08 4.2E-13 62.9 2.8 42 126-169 1-49 (49)
25 KOG0828 Predicted E3 ubiquitin 98.6 4.7E-08 1E-12 86.4 5.4 53 121-174 568-635 (636)
26 COG5574 PEX10 RING-finger-cont 98.6 1.9E-08 4.2E-13 82.6 2.5 52 122-177 213-266 (271)
27 COG5194 APC11 Component of SCF 98.6 3.9E-08 8.5E-13 66.6 3.2 28 145-172 53-80 (88)
28 KOG1493 Anaphase-promoting com 98.6 1.4E-08 3E-13 68.2 0.6 48 124-172 20-80 (84)
29 PF13445 zf-RING_UBOX: RING-ty 98.5 9.7E-08 2.1E-12 58.0 2.5 38 127-166 1-43 (43)
30 KOG2164 Predicted E3 ubiquitin 98.4 1.6E-07 3.5E-12 83.5 2.9 51 124-178 186-241 (513)
31 PF11793 FANCL_C: FANCL C-term 98.4 7E-08 1.5E-12 64.9 0.4 49 124-172 2-65 (70)
32 PF04564 U-box: U-box domain; 98.3 2.5E-07 5.3E-12 62.7 1.9 51 123-177 3-54 (73)
33 TIGR00570 cdk7 CDK-activating 98.3 6.9E-07 1.5E-11 75.8 4.3 54 124-178 3-59 (309)
34 KOG0287 Postreplication repair 98.3 2.9E-07 6.2E-12 78.2 1.1 53 122-178 21-73 (442)
35 KOG2930 SCF ubiquitin ligase, 98.2 8E-07 1.7E-11 63.1 2.3 48 124-172 46-107 (114)
36 COG5219 Uncharacterized conser 98.2 4.4E-07 9.5E-12 85.6 0.6 53 121-173 1466-1523(1525)
37 COG5432 RAD18 RING-finger-cont 98.2 9.8E-07 2.1E-11 73.6 2.4 51 122-176 23-73 (391)
38 KOG2177 Predicted E3 ubiquitin 98.2 8.4E-07 1.8E-11 73.3 1.9 46 121-170 10-55 (386)
39 KOG0804 Cytoplasmic Zn-finger 98.1 1.2E-06 2.6E-11 76.8 2.7 52 120-174 171-223 (493)
40 KOG1645 RING-finger-containing 98.1 1.6E-06 3.4E-11 75.3 3.1 50 123-172 3-55 (463)
41 KOG4445 Uncharacterized conser 98.1 9.4E-07 2E-11 74.0 0.7 53 120-173 111-186 (368)
42 KOG0827 Predicted E3 ubiquitin 98.1 1.6E-06 3.4E-11 74.9 2.0 47 125-172 5-55 (465)
43 KOG0825 PHD Zn-finger protein 98.0 1.1E-06 2.4E-11 81.6 -0.1 53 122-175 121-173 (1134)
44 PF14835 zf-RING_6: zf-RING of 98.0 1.3E-06 2.9E-11 57.1 -0.1 52 124-180 7-58 (65)
45 KOG1039 Predicted E3 ubiquitin 98.0 3.9E-06 8.4E-11 72.5 2.5 51 122-172 159-220 (344)
46 KOG4265 Predicted E3 ubiquitin 97.9 5.4E-06 1.2E-10 71.0 2.6 48 122-173 288-336 (349)
47 KOG0311 Predicted E3 ubiquitin 97.9 1.4E-06 3.1E-11 74.4 -1.6 53 120-175 39-92 (381)
48 KOG0801 Predicted E3 ubiquitin 97.8 7.9E-06 1.7E-10 62.8 0.7 31 121-152 174-204 (205)
49 KOG0978 E3 ubiquitin ligase in 97.7 1.3E-05 2.9E-10 74.4 1.4 51 123-177 642-693 (698)
50 KOG3970 Predicted E3 ubiquitin 97.7 3.6E-05 7.7E-10 62.3 3.3 54 120-175 46-107 (299)
51 KOG4172 Predicted E3 ubiquitin 97.6 1.6E-05 3.5E-10 50.2 0.7 45 124-172 7-53 (62)
52 KOG0824 Predicted E3 ubiquitin 97.6 4.6E-05 9.9E-10 64.0 2.8 49 123-175 6-55 (324)
53 KOG1941 Acetylcholine receptor 97.5 4.1E-05 8.8E-10 66.4 1.2 48 122-170 363-413 (518)
54 KOG0297 TNF receptor-associate 97.4 7.2E-05 1.6E-09 66.1 2.4 52 121-175 18-69 (391)
55 KOG1785 Tyrosine kinase negati 97.4 4.3E-05 9.4E-10 66.5 0.7 50 120-173 365-416 (563)
56 PF11789 zf-Nse: Zinc-finger o 97.4 0.0001 2.2E-09 47.5 2.0 43 122-167 9-53 (57)
57 KOG4159 Predicted E3 ubiquitin 97.4 8.9E-05 1.9E-09 65.4 2.3 49 122-174 82-130 (398)
58 KOG1428 Inhibitor of type V ad 97.4 0.00011 2.4E-09 72.4 3.0 69 102-176 3469-3547(3738)
59 PF05883 Baculo_RING: Baculovi 97.3 6.8E-05 1.5E-09 56.2 0.8 38 124-162 26-69 (134)
60 KOG1952 Transcription factor N 97.2 0.00023 4.9E-09 67.1 2.9 50 121-170 188-244 (950)
61 KOG2879 Predicted E3 ubiquitin 96.9 0.0013 2.7E-08 54.9 4.5 52 120-174 235-288 (298)
62 PF12906 RINGv: RING-variant d 96.9 0.00082 1.8E-08 41.5 2.4 41 127-168 1-47 (47)
63 KOG2660 Locus-specific chromos 96.9 0.00021 4.6E-09 60.8 -0.4 51 122-175 13-63 (331)
64 PHA02825 LAP/PHD finger-like p 96.8 0.0011 2.3E-08 51.1 3.3 51 120-174 4-60 (162)
65 PHA02862 5L protein; Provision 96.7 0.00081 1.8E-08 50.9 1.9 47 124-175 2-55 (156)
66 KOG0826 Predicted E3 ubiquitin 96.7 0.0016 3.5E-08 55.5 3.7 48 120-170 296-343 (357)
67 PF10367 Vps39_2: Vacuolar sor 96.7 0.00063 1.4E-08 48.7 1.0 33 122-156 76-108 (109)
68 COG5152 Uncharacterized conser 96.7 0.00088 1.9E-08 53.4 1.9 46 122-171 194-239 (259)
69 PHA03096 p28-like protein; Pro 96.6 0.001 2.2E-08 56.4 1.7 48 125-172 179-236 (284)
70 KOG1814 Predicted E3 ubiquitin 96.5 0.0012 2.7E-08 57.7 1.6 48 122-170 182-237 (445)
71 COG5222 Uncharacterized conser 96.4 0.0033 7.1E-08 53.1 3.5 53 124-179 274-328 (427)
72 PF14570 zf-RING_4: RING/Ubox 96.4 0.0038 8.1E-08 38.7 2.8 44 127-171 1-46 (48)
73 PF08746 zf-RING-like: RING-li 96.1 0.0045 9.7E-08 37.5 2.2 41 127-168 1-43 (43)
74 KOG0827 Predicted E3 ubiquitin 96.0 0.00032 7E-09 60.9 -4.3 55 122-177 194-249 (465)
75 KOG1002 Nucleotide excision re 96.0 0.003 6.5E-08 57.1 1.6 49 120-172 532-585 (791)
76 KOG1813 Predicted E3 ubiquitin 95.8 0.0042 9.1E-08 52.3 1.2 47 122-172 239-285 (313)
77 KOG1571 Predicted E3 ubiquitin 95.7 0.0067 1.5E-07 52.4 2.3 46 120-172 301-346 (355)
78 KOG4739 Uncharacterized protei 95.7 0.0046 1E-07 50.7 1.2 43 126-172 5-47 (233)
79 KOG3039 Uncharacterized conser 95.6 0.012 2.7E-07 48.4 3.3 53 123-175 220-272 (303)
80 PF14446 Prok-RING_1: Prokaryo 95.3 0.023 4.9E-07 36.0 3.1 42 122-167 3-44 (54)
81 PF15102 TMEM154: TMEM154 prot 95.3 0.02 4.3E-07 43.6 3.3 34 13-46 53-86 (146)
82 PF04641 Rtf2: Rtf2 RING-finge 94.8 0.037 8E-07 46.3 4.1 55 120-175 109-163 (260)
83 COG5236 Uncharacterized conser 94.7 0.045 9.8E-07 47.3 4.3 48 120-171 57-106 (493)
84 KOG1940 Zn-finger protein [Gen 94.6 0.019 4.1E-07 48.3 1.9 46 124-170 158-204 (276)
85 KOG3268 Predicted E3 ubiquitin 94.5 0.028 6.1E-07 44.2 2.4 30 145-174 189-229 (234)
86 KOG2034 Vacuolar sorting prote 94.4 0.018 3.8E-07 55.0 1.3 37 121-159 814-850 (911)
87 KOG4692 Predicted E3 ubiquitin 94.4 0.031 6.8E-07 48.4 2.7 50 120-173 418-467 (489)
88 KOG2114 Vacuolar assembly/sort 94.3 0.021 4.4E-07 54.4 1.4 42 124-171 840-881 (933)
89 PF01102 Glycophorin_A: Glycop 94.2 0.042 9.1E-07 40.8 2.6 31 19-49 65-95 (122)
90 KOG4185 Predicted E3 ubiquitin 94.1 0.038 8.1E-07 46.8 2.6 48 124-172 3-54 (296)
91 PF14447 Prok-RING_4: Prokaryo 94.0 0.032 6.9E-07 35.4 1.4 44 125-174 8-51 (55)
92 PF12273 RCR: Chitin synthesis 93.9 0.023 4.9E-07 42.5 0.8 7 39-45 19-25 (130)
93 KOG4275 Predicted E3 ubiquitin 93.8 0.01 2.3E-07 50.0 -1.4 41 124-172 300-341 (350)
94 KOG1001 Helicase-like transcri 93.7 0.027 5.8E-07 53.2 1.0 46 125-175 455-502 (674)
95 KOG2932 E3 ubiquitin ligase in 93.4 0.03 6.6E-07 47.6 0.8 45 124-173 90-134 (389)
96 KOG0298 DEAD box-containing he 93.4 0.023 5E-07 56.2 0.1 46 122-170 1151-1196(1394)
97 COG5183 SSM4 Protein involved 93.3 0.093 2E-06 49.9 3.9 69 120-188 8-82 (1175)
98 KOG3053 Uncharacterized conser 93.2 0.038 8.3E-07 45.8 1.1 53 120-173 16-82 (293)
99 PF10272 Tmpp129: Putative tra 92.9 0.094 2E-06 45.8 3.1 54 121-175 268-353 (358)
100 KOG1812 Predicted E3 ubiquitin 92.0 0.075 1.6E-06 47.0 1.4 40 122-162 144-184 (384)
101 PF05568 ASFV_J13L: African sw 92.0 0.21 4.4E-06 38.1 3.5 30 18-47 29-58 (189)
102 PF02439 Adeno_E3_CR2: Adenovi 92.0 0.27 5.8E-06 28.8 3.2 28 18-47 7-34 (38)
103 KOG3002 Zn finger protein [Gen 92.0 0.094 2E-06 44.8 1.9 45 121-173 45-91 (299)
104 KOG1609 Protein involved in mR 91.9 0.12 2.6E-06 43.8 2.5 51 124-175 78-136 (323)
105 KOG0309 Conserved WD40 repeat- 91.9 0.094 2E-06 49.6 1.9 23 145-167 1047-1069(1081)
106 KOG3161 Predicted E3 ubiquitin 91.9 0.052 1.1E-06 50.4 0.3 45 124-171 11-55 (861)
107 PF13908 Shisa: Wnt and FGF in 91.2 0.19 4.1E-06 39.5 2.8 15 16-30 77-91 (179)
108 PF08693 SKG6: Transmembrane a 91.0 0.031 6.7E-07 33.2 -1.4 27 19-45 13-39 (40)
109 PF07800 DUF1644: Protein of u 90.8 0.23 4.9E-06 38.4 2.8 36 124-159 2-46 (162)
110 PHA02650 hypothetical protein; 90.7 0.67 1.5E-05 31.5 4.6 34 13-46 43-76 (81)
111 COG5175 MOT2 Transcriptional r 90.4 0.24 5.2E-06 42.9 2.8 55 121-176 11-67 (480)
112 KOG2817 Predicted E3 ubiquitin 90.3 0.22 4.7E-06 43.8 2.6 47 121-168 331-380 (394)
113 PHA02844 putative transmembran 90.2 0.71 1.5E-05 31.0 4.4 35 9-43 38-72 (75)
114 PF06024 DUF912: Nucleopolyhed 90.1 0.4 8.7E-06 34.3 3.4 19 28-46 71-90 (101)
115 KOG3899 Uncharacterized conser 89.8 0.17 3.7E-06 42.8 1.5 30 146-175 325-367 (381)
116 PHA02819 hypothetical protein; 88.8 1 2.2E-05 29.9 4.3 35 7-41 34-68 (71)
117 PF03854 zf-P11: P-11 zinc fin 87.9 0.25 5.4E-06 30.4 0.9 28 146-173 18-46 (50)
118 PF15176 LRR19-TM: Leucine-ric 87.6 1.3 2.8E-05 31.6 4.5 26 13-38 13-38 (102)
119 PF02480 Herpes_gE: Alphaherpe 87.5 0.17 3.7E-06 45.5 0.0 31 17-47 351-381 (439)
120 PF04478 Mid2: Mid2 like cell 87.4 0.12 2.6E-06 39.7 -0.9 36 11-46 42-79 (154)
121 PF07010 Endomucin: Endomucin; 86.6 1.9 4E-05 35.4 5.4 13 3-15 178-190 (259)
122 PF07975 C1_4: TFIIH C1-like d 86.6 0.59 1.3E-05 29.3 2.0 42 127-169 2-50 (51)
123 KOG3800 Predicted E3 ubiquitin 86.6 0.7 1.5E-05 39.1 3.1 55 126-180 2-58 (300)
124 PF12273 RCR: Chitin synthesis 85.9 0.5 1.1E-05 35.2 1.8 16 31-46 14-29 (130)
125 PHA03054 IMV membrane protein; 85.1 2.3 4.9E-05 28.3 4.3 27 14-40 43-69 (72)
126 KOG4362 Transcriptional regula 84.4 0.28 6.1E-06 46.1 -0.2 52 124-179 21-75 (684)
127 KOG0802 E3 ubiquitin ligase [P 84.3 0.71 1.5E-05 42.6 2.4 49 121-177 476-524 (543)
128 PTZ00370 STEVOR; Provisional 84.2 0.79 1.7E-05 38.8 2.4 26 21-46 257-282 (296)
129 PF13901 DUF4206: Domain of un 84.0 0.81 1.8E-05 36.8 2.3 41 123-169 151-196 (202)
130 KOG0269 WD40 repeat-containing 83.2 0.91 2E-05 43.1 2.6 41 125-167 780-820 (839)
131 KOG1829 Uncharacterized conser 82.9 0.46 9.9E-06 44.1 0.5 43 122-168 509-556 (580)
132 TIGR00622 ssl1 transcription f 82.9 2.1 4.6E-05 31.3 3.9 69 98-170 33-111 (112)
133 PF05290 Baculo_IE-1: Baculovi 82.8 1.3 2.9E-05 33.2 2.9 53 123-175 79-134 (140)
134 KOG3005 GIY-YIG type nuclease 82.8 0.68 1.5E-05 38.8 1.4 51 122-172 180-242 (276)
135 COG5220 TFB3 Cdk activating ki 81.9 0.63 1.4E-05 38.4 0.9 50 123-172 9-63 (314)
136 PHA02975 hypothetical protein; 81.5 3.9 8.4E-05 27.1 4.3 26 15-40 40-65 (69)
137 PF06365 CD34_antigen: CD34/Po 81.4 2 4.3E-05 34.7 3.6 29 19-47 102-130 (202)
138 KOG4718 Non-SMC (structural ma 81.2 0.84 1.8E-05 37.0 1.4 43 123-168 180-222 (235)
139 PF02060 ISK_Channel: Slow vol 81.1 1.8 3.8E-05 32.3 2.9 29 18-46 44-72 (129)
140 KOG0825 PHD Zn-finger protein 80.9 1.3 2.8E-05 42.5 2.6 50 123-172 95-153 (1134)
141 KOG1100 Predicted E3 ubiquitin 80.9 0.95 2.1E-05 36.7 1.6 38 127-172 161-199 (207)
142 PF14575 EphA2_TM: Ephrin type 80.5 2.5 5.4E-05 28.5 3.4 23 23-46 6-28 (75)
143 PF13209 DUF4017: Protein of u 80.0 1.4 3E-05 27.9 1.8 35 7-41 22-56 (60)
144 PF05393 Hum_adeno_E3A: Human 79.6 1.6 3.5E-05 30.4 2.2 6 41-46 54-59 (94)
145 PF07213 DAP10: DAP10 membrane 79.2 7.9 0.00017 26.4 5.4 35 13-47 29-63 (79)
146 KOG2066 Vacuolar assembly/sort 79.0 0.72 1.6E-05 44.0 0.4 45 122-168 782-830 (846)
147 PF06906 DUF1272: Protein of u 77.8 4.1 8.9E-05 26.0 3.4 50 125-177 6-56 (57)
148 smart00249 PHD PHD zinc finger 76.3 1.8 4E-05 25.1 1.6 31 126-157 1-31 (47)
149 PF05454 DAG1: Dystroglycan (D 76.2 0.84 1.8E-05 38.9 0.0 7 73-79 194-200 (290)
150 PTZ00382 Variant-specific surf 75.6 0.6 1.3E-05 33.2 -0.9 12 20-31 68-79 (96)
151 KOG1815 Predicted E3 ubiquitin 75.5 2 4.2E-05 38.8 2.2 37 122-161 68-104 (444)
152 PHA02692 hypothetical protein; 75.0 6.9 0.00015 26.0 4.1 29 12-40 38-67 (70)
153 PF02009 Rifin_STEVOR: Rifin/s 74.8 2.5 5.4E-05 36.2 2.5 9 32-40 269-277 (299)
154 PF14979 TMEM52: Transmembrane 74.7 6.9 0.00015 29.9 4.5 13 35-47 39-51 (154)
155 PF01363 FYVE: FYVE zinc finge 73.4 1.5 3.2E-05 28.6 0.7 38 122-159 7-44 (69)
156 PF01102 Glycophorin_A: Glycop 73.3 4.9 0.00011 29.8 3.4 35 14-48 64-98 (122)
157 PF01034 Syndecan: Syndecan do 73.1 1.1 2.4E-05 29.3 -0.0 15 18-32 13-27 (64)
158 PF10577 UPF0560: Uncharacteri 73.0 6.4 0.00014 37.9 4.9 30 18-47 273-303 (807)
159 PF04971 Lysis_S: Lysis protei 72.6 4.1 9E-05 27.0 2.6 28 20-47 35-62 (68)
160 KOG3039 Uncharacterized conser 71.6 2.9 6.3E-05 34.8 2.1 36 121-160 40-75 (303)
161 KOG1812 Predicted E3 ubiquitin 70.5 2.2 4.8E-05 37.8 1.3 44 124-168 306-351 (384)
162 PF00628 PHD: PHD-finger; Int 70.4 2.7 5.8E-05 25.6 1.3 43 126-169 1-49 (51)
163 KOG4367 Predicted Zn-finger pr 70.2 2.2 4.7E-05 38.3 1.1 35 122-160 2-36 (699)
164 PF14851 FAM176: FAM176 family 69.5 13 0.00028 28.7 5.1 20 16-35 23-42 (153)
165 PF02891 zf-MIZ: MIZ/SP-RING z 68.9 5.1 0.00011 24.7 2.3 43 125-171 3-50 (50)
166 smart00132 LIM Zinc-binding do 68.1 4.2 9.1E-05 22.6 1.7 37 126-172 1-37 (39)
167 KOG2807 RNA polymerase II tran 67.9 6 0.00013 34.2 3.3 70 96-170 306-375 (378)
168 PF02480 Herpes_gE: Alphaherpe 67.1 1.8 3.9E-05 39.0 0.0 32 17-49 355-386 (439)
169 PF00412 LIM: LIM domain; Int 66.9 3.7 8E-05 25.4 1.4 40 127-176 1-40 (58)
170 KOG3653 Transforming growth fa 66.8 15 0.00032 33.6 5.6 13 151-163 291-303 (534)
171 PF08374 Protocadherin: Protoc 66.7 2.3 4.9E-05 34.6 0.5 25 16-40 36-60 (221)
172 PF13719 zinc_ribbon_5: zinc-r 66.2 4 8.6E-05 23.5 1.3 26 126-151 4-36 (37)
173 smart00064 FYVE Protein presen 66.2 5.8 0.00012 25.7 2.3 37 123-159 9-45 (68)
174 cd00065 FYVE FYVE domain; Zinc 65.9 5.3 0.00011 24.8 2.0 37 124-160 2-38 (57)
175 COG5109 Uncharacterized conser 65.7 4.7 0.0001 34.7 2.2 48 120-168 332-382 (396)
176 KOG3113 Uncharacterized conser 65.2 6.7 0.00015 32.7 3.0 54 120-175 107-160 (293)
177 PRK14762 membrane protein; Pro 65.0 11 0.00025 19.9 2.7 15 16-30 5-19 (27)
178 PF10717 ODV-E18: Occlusion-de 63.4 18 0.00039 25.0 4.3 22 11-32 18-39 (85)
179 PF12575 DUF3753: Protein of u 63.0 15 0.00033 24.6 3.8 24 17-40 46-69 (72)
180 PF12191 stn_TNFRSF12A: Tumour 62.9 2.9 6.3E-05 31.1 0.4 17 15-31 75-91 (129)
181 PF03229 Alpha_GJ: Alphavirus 62.3 12 0.00025 27.5 3.4 25 22-46 87-112 (126)
182 cd00350 rubredoxin_like Rubred 60.8 5.3 0.00011 22.4 1.2 20 145-170 6-25 (33)
183 TIGR01433 CyoA cytochrome o ub 60.8 16 0.00035 29.9 4.5 11 35-45 48-58 (226)
184 KOG1729 FYVE finger containing 60.3 1.7 3.8E-05 36.9 -1.3 39 124-163 214-252 (288)
185 PF10571 UPF0547: Uncharacteri 59.2 5.7 0.00012 21.2 1.0 23 126-150 2-24 (26)
186 PF06844 DUF1244: Protein of u 58.7 5.8 0.00013 26.1 1.2 12 149-160 11-22 (68)
187 PF10497 zf-4CXXC_R1: Zinc-fin 58.5 15 0.00033 26.4 3.5 24 147-170 37-69 (105)
188 PF11770 GAPT: GRB2-binding ad 58.4 11 0.00024 28.9 2.9 7 163-169 130-136 (158)
189 PRK06287 cobalt transport prot 58.2 24 0.00052 25.5 4.5 34 6-39 64-99 (107)
190 KOG0824 Predicted E3 ubiquitin 57.7 6.3 0.00014 33.7 1.6 52 120-174 101-152 (324)
191 PF06024 DUF912: Nucleopolyhed 57.7 11 0.00023 26.9 2.6 23 24-46 71-93 (101)
192 PF14991 MLANA: Protein melan- 57.2 1.7 3.7E-05 31.7 -1.6 23 23-45 29-51 (118)
193 PF13717 zinc_ribbon_4: zinc-r 57.1 7.1 0.00015 22.4 1.3 26 125-151 3-36 (36)
194 PF01034 Syndecan: Syndecan do 57.0 3.7 8E-05 26.9 0.1 26 21-46 12-38 (64)
195 PRK14750 kdpF potassium-transp 56.9 17 0.00037 19.8 2.6 19 21-39 3-21 (29)
196 PF14169 YdjO: Cold-inducible 56.2 6.3 0.00014 25.4 1.1 14 161-174 38-51 (59)
197 PF14654 Epiglycanin_C: Mucin, 56.1 27 0.00058 24.9 4.2 14 32-45 32-45 (106)
198 PRK10525 cytochrome o ubiquino 56.1 16 0.00036 31.5 3.9 28 19-46 44-71 (315)
199 PF07649 C1_3: C1-like domain; 55.7 10 0.00022 20.5 1.8 29 126-155 2-30 (30)
200 PF11980 DUF3481: Domain of un 55.5 14 0.00031 25.5 2.8 27 16-42 15-41 (87)
201 PRK11486 flagellar biosynthesi 55.4 37 0.00081 25.3 5.2 7 38-44 35-41 (124)
202 PHA02849 putative transmembran 55.2 20 0.00044 24.4 3.4 26 15-40 12-37 (82)
203 KOG2068 MOT2 transcription fac 55.2 14 0.0003 32.0 3.3 50 123-173 248-298 (327)
204 PF13807 GNVR: G-rich domain o 55.0 26 0.00057 23.6 4.1 18 12-29 55-72 (82)
205 PHA02657 hypothetical protein; 54.2 23 0.00049 24.6 3.5 34 7-40 13-47 (95)
206 PF14569 zf-UDP: Zinc-binding 53.8 22 0.00047 24.3 3.4 52 122-173 7-62 (80)
207 PF05568 ASFV_J13L: African sw 53.7 16 0.00034 28.1 3.0 38 8-45 23-60 (189)
208 PF15048 OSTbeta: Organic solu 53.4 26 0.00056 26.1 4.0 34 13-46 31-64 (125)
209 PHA03265 envelope glycoprotein 53.1 6.5 0.00014 34.3 1.0 12 35-46 365-376 (402)
210 PF00957 Synaptobrevin: Synapt 52.7 21 0.00046 24.3 3.4 8 34-41 81-88 (89)
211 PF15347 PAG: Phosphoprotein a 52.2 9 0.0002 33.8 1.7 38 6-43 2-39 (428)
212 PHA02819 hypothetical protein; 52.1 35 0.00076 22.7 4.1 28 9-36 39-66 (71)
213 PHA03164 hypothetical protein; 51.6 25 0.00054 23.9 3.4 23 18-41 59-81 (88)
214 PF04906 Tweety: Tweety; Inte 51.2 19 0.00042 32.1 3.7 39 8-46 12-50 (406)
215 PF06143 Baculo_11_kDa: Baculo 51.1 29 0.00064 24.0 3.8 9 7-15 14-22 (84)
216 PTZ00046 rifin; Provisional 50.8 14 0.0003 32.4 2.7 13 28-40 324-336 (358)
217 PHA03163 hypothetical protein; 50.8 28 0.00061 24.3 3.6 37 8-44 47-84 (92)
218 PF14914 LRRC37AB_C: LRRC37A/B 50.6 23 0.00049 27.2 3.4 21 19-39 121-141 (154)
219 KOG0956 PHD finger protein AF1 50.6 5.5 0.00012 37.8 0.1 52 122-173 115-182 (900)
220 PF12768 Rax2: Cortical protei 50.4 10 0.00022 32.1 1.8 28 17-44 230-257 (281)
221 PHA02844 putative transmembran 50.4 38 0.00083 22.8 4.1 28 9-36 41-68 (75)
222 KOG2979 Protein involved in DN 50.3 11 0.00023 31.6 1.7 42 124-168 176-219 (262)
223 PF00539 Tat: Transactivating 49.9 12 0.00026 24.8 1.7 37 132-179 14-50 (68)
224 KOG4482 Sarcoglycan complex, a 49.8 25 0.00054 31.1 4.0 44 2-46 282-325 (449)
225 PF06667 PspB: Phage shock pro 49.6 33 0.00072 23.2 3.8 9 32-40 18-26 (75)
226 KOG3842 Adaptor protein Pellin 49.5 20 0.00044 31.0 3.4 54 120-174 337-415 (429)
227 PLN02189 cellulose synthase 49.1 19 0.00041 36.0 3.5 52 122-173 32-87 (1040)
228 TIGR01477 RIFIN variant surfac 49.0 16 0.00034 32.0 2.7 9 32-40 323-331 (353)
229 KOG4323 Polycomb-like PHD Zn-f 48.3 23 0.00049 32.2 3.6 49 124-172 168-225 (464)
230 PF09723 Zn-ribbon_8: Zinc rib 48.0 4.3 9.4E-05 24.1 -0.6 25 145-170 10-34 (42)
231 PF13832 zf-HC5HC2H_2: PHD-zin 47.5 14 0.0003 26.2 1.9 32 123-157 54-87 (110)
232 smart00647 IBR In Between Ring 46.9 5.8 0.00013 24.9 -0.2 21 138-158 38-58 (64)
233 KOG2041 WD40 repeat protein [G 46.7 16 0.00035 35.2 2.5 48 121-172 1128-1184(1189)
234 PF09451 ATG27: Autophagy-rela 46.5 44 0.00096 27.9 5.0 18 12-29 195-212 (268)
235 PF05715 zf-piccolo: Piccolo Z 46.2 15 0.00032 23.7 1.6 11 162-172 2-12 (61)
236 PF06809 NPDC1: Neural prolife 46.0 20 0.00044 30.9 2.8 12 33-44 213-224 (341)
237 PF05624 LSR: Lipolysis stimul 45.4 13 0.00028 22.7 1.2 18 17-34 2-19 (49)
238 PF01601 Corona_S2: Coronaviru 45.4 6.7 0.00015 36.6 -0.1 30 11-40 540-569 (610)
239 PF08374 Protocadherin: Protoc 45.3 17 0.00036 29.7 2.1 28 10-37 34-61 (221)
240 PF05399 EVI2A: Ectropic viral 45.2 30 0.00065 28.1 3.6 19 20-38 132-150 (227)
241 PRK05978 hypothetical protein; 45.1 15 0.00032 28.2 1.8 24 147-175 42-65 (148)
242 PF15145 DUF4577: Domain of un 44.8 51 0.0011 24.1 4.3 17 17-33 61-77 (128)
243 PHA02650 hypothetical protein; 44.6 51 0.0011 22.5 4.0 20 17-36 50-69 (81)
244 TIGR02866 CoxB cytochrome c ox 44.4 28 0.00061 27.7 3.4 11 32-42 26-36 (201)
245 PF04834 Adeno_E3_14_5: Early 43.9 44 0.00095 23.7 3.8 24 16-41 23-46 (97)
246 PF01708 Gemini_mov: Geminivir 43.8 37 0.0008 23.8 3.4 6 11-16 33-38 (91)
247 PF00558 Vpu: Vpu protein; In 43.5 34 0.00074 23.5 3.1 8 92-99 56-63 (81)
248 PF15013 CCSMST1: CCSMST1 fami 43.4 15 0.00033 24.9 1.4 16 31-46 38-53 (77)
249 PRK13453 F0F1 ATP synthase sub 43.2 35 0.00076 26.5 3.7 23 17-39 18-40 (173)
250 PRK13461 F0F1 ATP synthase sub 43.0 36 0.00078 25.9 3.7 25 15-39 3-27 (159)
251 KOG3579 Predicted E3 ubiquitin 42.9 14 0.0003 31.5 1.4 42 121-162 265-306 (352)
252 PF07191 zinc-ribbons_6: zinc- 42.9 7.8 0.00017 25.9 -0.1 39 125-172 2-40 (70)
253 COG3813 Uncharacterized protei 42.4 27 0.00058 23.5 2.4 50 126-178 7-57 (84)
254 PF04423 Rad50_zn_hook: Rad50 42.4 7.6 0.00016 24.2 -0.2 11 163-173 21-31 (54)
255 PF06697 DUF1191: Protein of u 42.2 9.7 0.00021 32.3 0.4 24 11-34 207-230 (278)
256 PRK11827 hypothetical protein; 41.7 8.5 0.00018 24.9 -0.0 19 156-174 2-20 (60)
257 PLN02436 cellulose synthase A 41.7 28 0.00061 34.9 3.5 52 122-173 34-89 (1094)
258 PF14311 DUF4379: Domain of un 41.7 17 0.00038 22.5 1.4 23 145-168 33-55 (55)
259 PF06676 DUF1178: Protein of u 41.2 12 0.00026 28.7 0.7 30 146-180 10-50 (148)
260 PHA03054 IMV membrane protein; 41.0 63 0.0014 21.6 4.0 26 11-36 43-68 (72)
261 PTZ00382 Variant-specific surf 40.9 11 0.00023 26.7 0.4 21 12-32 64-84 (96)
262 PF15183 MRAP: Melanocortin-2 40.5 1.2E+02 0.0026 21.0 5.4 13 20-32 41-53 (90)
263 PF07282 OrfB_Zn_ribbon: Putat 40.3 32 0.00069 22.2 2.6 35 123-157 27-63 (69)
264 COG4847 Uncharacterized protei 40.0 27 0.00059 24.7 2.3 35 124-160 6-40 (103)
265 PF03229 Alpha_GJ: Alphavirus 39.9 15 0.00033 26.9 1.1 42 6-47 75-116 (126)
266 KOG2071 mRNA cleavage and poly 39.8 21 0.00044 33.3 2.1 36 122-159 511-557 (579)
267 PRK13415 flagella biosynthesis 39.6 68 0.0015 26.2 4.9 12 16-27 64-75 (219)
268 PF15183 MRAP: Melanocortin-2 39.5 45 0.00098 23.1 3.2 20 19-38 36-55 (90)
269 PHA02692 hypothetical protein; 39.3 73 0.0016 21.2 4.1 25 11-35 41-65 (70)
270 KOG2052 Activin A type IB rece 39.1 71 0.0015 29.2 5.3 25 25-49 138-163 (513)
271 KOG1538 Uncharacterized conser 38.9 14 0.0003 35.3 0.9 37 136-172 1040-1076(1081)
272 PF15145 DUF4577: Domain of un 38.7 65 0.0014 23.6 4.1 31 7-37 54-84 (128)
273 COG1592 Rubrerythrin [Energy p 38.3 17 0.00037 28.4 1.2 24 140-170 134-157 (166)
274 PF12297 EVC2_like: Ellis van 38.2 46 0.001 29.9 4.0 16 17-32 68-83 (429)
275 PF12877 DUF3827: Domain of un 37.7 33 0.00072 32.5 3.1 6 150-155 447-452 (684)
276 PRK14748 kdpF potassium-transp 37.3 52 0.0011 18.0 2.6 16 22-37 4-19 (29)
277 PF05478 Prominin: Prominin; 37.0 44 0.00095 32.6 4.0 28 14-41 88-115 (806)
278 PF02318 FYVE_2: FYVE-type zin 36.6 22 0.00048 25.8 1.5 47 123-170 53-102 (118)
279 PRK04778 septation ring format 36.1 26 0.00057 32.6 2.2 17 26-42 8-24 (569)
280 PF07204 Orthoreo_P10: Orthore 35.6 23 0.00049 25.0 1.3 16 16-32 41-56 (98)
281 smart00531 TFIIE Transcription 35.5 29 0.00064 26.2 2.1 14 163-176 124-137 (147)
282 PRK14473 F0F1 ATP synthase sub 35.3 56 0.0012 25.0 3.7 23 17-39 8-30 (164)
283 PF06937 EURL: EURL protein; 35.2 31 0.00068 29.1 2.3 54 121-176 27-82 (285)
284 PF11770 GAPT: GRB2-binding ad 35.1 22 0.00049 27.3 1.3 16 23-38 12-27 (158)
285 PF14927 Neurensin: Neurensin 34.6 83 0.0018 23.9 4.3 34 7-40 34-67 (140)
286 COG1622 CyoA Heme/copper-type 34.4 57 0.0012 27.2 3.7 12 155-166 216-227 (247)
287 PLN02638 cellulose synthase A 34.3 45 0.00098 33.5 3.6 52 122-173 15-70 (1079)
288 PF05605 zf-Di19: Drought indu 34.2 9.4 0.0002 23.7 -0.7 14 124-137 2-15 (54)
289 PRK14472 F0F1 ATP synthase sub 34.2 73 0.0016 24.7 4.2 22 17-38 18-39 (175)
290 PF05502 Dynactin_p62: Dynacti 34.2 21 0.00046 32.7 1.3 15 124-138 26-40 (483)
291 PF13260 DUF4051: Protein of u 34.1 46 0.00099 20.5 2.3 12 16-27 4-15 (54)
292 PF13771 zf-HC5HC2H: PHD-like 34.1 30 0.00065 23.4 1.8 33 124-157 36-68 (90)
293 PRK14471 F0F1 ATP synthase sub 33.1 59 0.0013 24.8 3.5 23 17-39 8-30 (164)
294 PHA03283 envelope glycoprotein 33.0 74 0.0016 29.4 4.5 16 31-46 412-427 (542)
295 PF04710 Pellino: Pellino; In 32.9 14 0.00031 32.8 0.0 51 123-174 327-402 (416)
296 PF03107 C1_2: C1 domain; Int 32.8 30 0.00066 18.7 1.3 29 126-155 2-30 (30)
297 KOG1815 Predicted E3 ubiquitin 32.6 16 0.00035 32.9 0.2 40 123-162 225-268 (444)
298 PF10577 UPF0560: Uncharacteri 32.5 52 0.0011 32.0 3.6 39 8-46 267-305 (807)
299 PF04216 FdhE: Protein involve 32.1 6.9 0.00015 33.1 -2.1 48 122-170 170-219 (290)
300 PF12259 DUF3609: Protein of u 31.8 14 0.00031 32.5 -0.2 8 25-32 304-311 (361)
301 cd00730 rubredoxin Rubredoxin; 31.5 49 0.0011 20.5 2.2 38 126-170 3-42 (50)
302 TIGR03141 cytochro_ccmD heme e 31.3 66 0.0014 19.2 2.7 25 17-41 4-28 (45)
303 KOG4185 Predicted E3 ubiquitin 30.7 8.8 0.00019 32.3 -1.7 48 124-171 207-265 (296)
304 COG3492 Uncharacterized protei 30.3 25 0.00055 24.7 0.9 13 149-161 42-54 (104)
305 PF15106 TMEM156: TMEM156 prot 30.1 39 0.00084 27.5 2.0 12 17-28 176-187 (226)
306 PF04995 CcmD: Heme exporter p 30.1 73 0.0016 19.1 2.8 21 17-37 3-23 (46)
307 PF07423 DUF1510: Protein of u 29.9 38 0.00083 27.7 2.0 15 15-29 14-28 (217)
308 PF15353 HECA: Headcase protei 29.6 33 0.0007 24.8 1.3 14 146-159 40-53 (107)
309 PF11755 DUF3311: Protein of u 29.5 1.3E+02 0.0029 19.5 4.2 28 14-41 25-52 (66)
310 PF00974 Rhabdo_glycop: Rhabdo 29.4 18 0.00039 33.3 0.0 7 17-23 451-457 (501)
311 PF09472 MtrF: Tetrahydrometha 29.4 76 0.0016 20.8 2.9 9 18-26 44-52 (64)
312 PHA02680 ORF090 IMV phosphoryl 29.4 1.1E+02 0.0024 21.3 3.9 28 12-39 42-69 (91)
313 PF09943 DUF2175: Uncharacteri 29.2 42 0.00091 24.1 1.8 32 126-159 4-35 (101)
314 PF15102 TMEM154: TMEM154 prot 29.1 14 0.00031 28.2 -0.6 25 23-47 66-90 (146)
315 PF11044 TMEMspv1-c74-12: Plec 29.1 1E+02 0.0022 18.7 3.2 8 20-27 10-17 (49)
316 PLN02195 cellulose synthase A 29.0 67 0.0015 32.0 3.8 53 121-173 3-59 (977)
317 PF14316 DUF4381: Domain of un 29.0 74 0.0016 23.9 3.4 6 156-161 140-145 (146)
318 PF05191 ADK_lid: Adenylate ki 28.6 20 0.00043 20.6 0.1 28 143-172 4-31 (36)
319 PF15168 TRIQK: Triple QxxK/R 28.5 1.1E+02 0.0023 20.8 3.6 20 20-39 51-70 (79)
320 PF15179 Myc_target_1: Myc tar 28.5 84 0.0018 25.1 3.6 13 34-46 38-50 (197)
321 PF06422 PDR_CDR: CDR ABC tran 28.5 71 0.0015 22.6 3.0 15 21-35 52-66 (103)
322 PF09777 OSTMP1: Osteopetrosis 28.1 1.1E+02 0.0023 25.3 4.4 28 17-44 189-216 (237)
323 PF05510 Sarcoglycan_2: Sarcog 28.0 93 0.002 27.7 4.2 16 31-46 298-313 (386)
324 PF03554 Herpes_UL73: UL73 vir 27.9 82 0.0018 21.7 3.0 28 17-44 48-75 (82)
325 PF12768 Rax2: Cortical protei 27.8 23 0.00051 30.0 0.4 35 13-47 222-257 (281)
326 PF08114 PMP1_2: ATPase proteo 27.8 25 0.00053 20.9 0.4 6 34-39 25-30 (43)
327 KOG1245 Chromatin remodeling c 27.7 21 0.00046 37.0 0.2 52 120-172 1104-1159(1404)
328 PHA03048 IMV membrane protein; 27.6 1.2E+02 0.0026 21.3 3.8 27 13-39 41-67 (93)
329 PF06750 DiS_P_DiS: Bacterial 27.5 48 0.001 23.1 1.9 38 124-174 33-70 (92)
330 PF14979 TMEM52: Transmembrane 27.5 84 0.0018 24.1 3.3 37 13-50 14-51 (154)
331 PF13120 DUF3974: Domain of un 27.4 1.1E+02 0.0024 21.8 3.7 25 16-40 2-28 (126)
332 KOG4430 Topoisomerase I-bindin 27.2 21 0.00045 33.1 0.0 52 121-172 257-308 (553)
333 PF05454 DAG1: Dystroglycan (D 26.9 21 0.00046 30.5 0.0 7 40-46 168-174 (290)
334 PF04689 S1FA: DNA binding pro 26.7 34 0.00074 22.4 0.9 18 25-42 21-38 (69)
335 KOG0196 Tyrosine kinase, EPH ( 26.7 1.1E+02 0.0024 30.2 4.6 22 22-43 553-574 (996)
336 PLN00055 photosystem II reacti 26.7 1.2E+02 0.0026 20.4 3.5 24 16-39 36-61 (73)
337 KOG4218 Nuclear hormone recept 26.6 20 0.00044 31.4 -0.1 52 120-172 11-77 (475)
338 PRK11901 hypothetical protein; 26.5 63 0.0014 28.1 2.8 19 20-38 37-55 (327)
339 PRK08476 F0F1 ATP synthase sub 26.3 1E+02 0.0022 23.1 3.6 23 17-39 7-29 (141)
340 PHA03156 hypothetical protein; 26.2 85 0.0018 21.9 2.9 34 11-44 49-83 (90)
341 KOG3352 Cytochrome c oxidase, 26.0 38 0.00082 26.1 1.2 8 125-133 112-119 (153)
342 CHL00066 psbH photosystem II p 25.9 1.3E+02 0.0027 20.2 3.5 24 16-39 36-61 (73)
343 PLN02915 cellulose synthase A 25.9 95 0.0021 31.3 4.2 52 122-173 13-68 (1044)
344 smart00734 ZnF_Rad18 Rad18-lik 25.8 32 0.0007 18.1 0.6 9 164-172 3-11 (26)
345 cd07912 Tweety_N N-terminal do 25.7 97 0.0021 27.9 3.9 35 8-42 32-66 (418)
346 TIGR00686 phnA alkylphosphonat 25.7 43 0.00092 24.3 1.4 26 125-150 3-29 (109)
347 COG4068 Uncharacterized protei 25.7 16 0.00034 23.5 -0.7 13 162-174 8-20 (64)
348 PF10812 DUF2561: Protein of u 25.5 1.2E+02 0.0025 24.6 3.9 20 16-35 63-82 (207)
349 COG5336 Uncharacterized protei 25.5 97 0.0021 22.6 3.2 14 16-29 74-87 (116)
350 PF14914 LRRC37AB_C: LRRC37A/B 25.5 55 0.0012 25.1 2.0 32 15-46 113-144 (154)
351 PF07438 DUF1514: Protein of u 25.4 83 0.0018 20.6 2.5 13 20-32 4-16 (66)
352 KOG1773 Stress responsive prot 25.4 83 0.0018 20.6 2.5 28 19-46 33-60 (63)
353 COG2835 Uncharacterized conser 25.3 31 0.00068 22.3 0.6 9 164-172 10-18 (60)
354 KOG1356 Putative transcription 25.2 38 0.00082 33.0 1.3 49 121-171 226-280 (889)
355 PHA02898 virion envelope prote 25.1 1.3E+02 0.0029 21.0 3.6 27 13-39 42-68 (92)
356 PF06679 DUF1180: Protein of u 25.1 1.5E+02 0.0033 23.1 4.5 17 33-49 105-121 (163)
357 PF10777 YlaC: Inner membrane 25.0 93 0.002 24.0 3.1 24 12-35 56-79 (155)
358 PF13190 PDGLE: PDGLE domain 24.9 1.8E+02 0.0038 20.0 4.4 32 6-37 50-85 (88)
359 PTZ00208 65 kDa invariant surf 24.6 92 0.002 27.9 3.5 9 38-46 406-414 (436)
360 PF10389 CoatB: Bacteriophage 24.6 86 0.0019 19.1 2.4 21 24-44 24-44 (46)
361 COG3462 Predicted membrane pro 24.6 61 0.0013 23.6 2.0 15 25-39 56-70 (117)
362 PHA02902 putative IMV membrane 24.5 1.1E+02 0.0025 20.0 3.0 8 96-103 54-61 (70)
363 PF05399 EVI2A: Ectropic viral 24.5 61 0.0013 26.4 2.2 25 17-41 133-159 (227)
364 PRK01658 holin-like protein; V 24.4 93 0.002 22.9 3.1 30 14-43 86-115 (122)
365 PF09237 GAGA: GAGA factor; I 24.2 20 0.00044 22.5 -0.4 9 164-172 26-34 (54)
366 COG3763 Uncharacterized protei 24.2 1E+02 0.0022 20.6 2.8 7 96-102 39-45 (71)
367 PF05440 MtrB: Tetrahydrometha 24.2 52 0.0011 23.4 1.6 9 16-24 80-88 (97)
368 PRK07352 F0F1 ATP synthase sub 24.1 1.2E+02 0.0027 23.3 3.9 22 17-38 19-40 (174)
369 PF07253 Gypsy: Gypsy protein; 24.1 60 0.0013 29.7 2.3 26 21-46 418-443 (472)
370 COG1545 Predicted nucleic-acid 23.9 36 0.00078 25.7 0.8 22 143-172 32-53 (140)
371 PRK11088 rrmA 23S rRNA methylt 23.8 52 0.0011 27.2 1.8 25 125-150 3-27 (272)
372 PF04906 Tweety: Tweety; Inte 23.8 1.1E+02 0.0024 27.2 4.0 33 20-52 21-53 (406)
373 PF13179 DUF4006: Family of un 23.6 1.4E+02 0.0031 19.6 3.4 7 28-34 21-27 (66)
374 PF10215 Ost4: Oligosaccaryltr 23.6 1.6E+02 0.0034 16.9 3.6 17 19-35 8-24 (35)
375 PLN00113 leucine-rich repeat r 23.5 75 0.0016 31.1 3.1 23 19-41 630-652 (968)
376 COG1862 YajC Preprotein transl 23.4 31 0.00067 24.5 0.3 12 34-45 18-29 (97)
377 TIGR03017 EpsF chain length de 23.2 1.5E+02 0.0033 26.2 4.8 23 12-34 393-415 (444)
378 TIGR01006 polys_exp_MPA1 polys 23.2 1.6E+02 0.0034 23.6 4.5 16 16-31 175-190 (226)
379 PF03119 DNA_ligase_ZBD: NAD-d 23.1 28 0.00061 18.7 0.0 12 164-175 1-12 (28)
380 KOG4577 Transcription factor L 23.0 24 0.00051 30.2 -0.4 32 124-157 92-123 (383)
381 PRK13275 mtrF tetrahydromethan 22.7 1.6E+02 0.0034 19.5 3.5 8 19-26 45-52 (67)
382 PHA03282 envelope glycoprotein 22.7 2.4E+02 0.0051 26.0 5.7 25 24-48 413-437 (540)
383 PRK02624 psbH photosystem II r 22.7 1.7E+02 0.0037 19.0 3.5 25 15-39 23-49 (64)
384 PRK12705 hypothetical protein; 22.6 65 0.0014 29.8 2.3 10 20-29 4-13 (508)
385 PRK13460 F0F1 ATP synthase sub 22.6 1.5E+02 0.0033 22.8 4.2 14 20-33 19-32 (173)
386 PF07406 NICE-3: NICE-3 protei 22.6 1E+02 0.0022 24.6 3.1 17 151-167 125-143 (186)
387 PF10083 DUF2321: Uncharacteri 22.5 45 0.00098 25.8 1.1 45 128-175 8-52 (158)
388 PF15106 TMEM156: TMEM156 prot 22.5 1.2E+02 0.0026 24.7 3.5 33 20-52 176-208 (226)
389 COG5627 MMS21 DNA repair prote 21.6 54 0.0012 27.3 1.4 41 124-167 189-231 (275)
390 PF14851 FAM176: FAM176 family 21.6 2.3E+02 0.0049 21.9 4.8 26 19-44 22-47 (153)
391 PF14584 DUF4446: Protein of u 21.5 92 0.002 23.9 2.6 16 120-135 93-108 (151)
392 COG3114 CcmD Heme exporter pro 21.5 1.2E+02 0.0027 19.9 2.8 25 14-38 12-36 (67)
393 PF05473 Herpes_UL45: UL45 pro 21.4 1.1E+02 0.0024 24.5 3.2 12 22-33 55-66 (200)
394 PF07010 Endomucin: Endomucin; 21.3 1.4E+02 0.003 24.7 3.7 18 23-40 195-212 (259)
395 PLN02400 cellulose synthase 21.1 72 0.0016 32.2 2.4 52 122-173 34-89 (1085)
396 PF12660 zf-TFIIIC: Putative z 21.1 12 0.00026 26.5 -2.2 52 124-177 14-70 (99)
397 PF06796 NapE: Periplasmic nit 21.0 2.4E+02 0.0051 18.0 4.2 35 1-35 1-36 (56)
398 PF08274 PhnA_Zn_Ribbon: PhnA 20.9 42 0.00092 18.5 0.5 24 126-149 4-28 (30)
399 PRK06531 yajC preprotein trans 20.9 51 0.0011 24.1 1.0 8 39-46 17-24 (113)
400 PF15069 FAM163: FAM163 family 20.6 1.2E+02 0.0025 23.2 2.9 6 125-130 92-97 (143)
401 PF00737 PsbH: Photosystem II 20.6 2.3E+02 0.005 17.7 4.6 26 13-38 18-45 (52)
402 PF04341 DUF485: Protein of un 20.5 86 0.0019 21.7 2.1 23 20-42 53-75 (91)
403 PRK10220 hypothetical protein; 20.4 75 0.0016 23.1 1.8 26 125-150 4-30 (111)
404 PF10146 zf-C4H2: Zinc finger- 20.3 68 0.0015 26.4 1.8 12 161-172 207-218 (230)
405 PF05473 Herpes_UL45: UL45 pro 20.3 1.4E+02 0.0031 23.9 3.6 22 18-39 55-76 (200)
406 PF00430 ATP-synt_B: ATP synth 20.3 1.3E+02 0.0029 21.5 3.3 17 22-38 4-20 (132)
407 PRK10582 cytochrome o ubiquino 20.1 2.8E+02 0.006 20.1 4.7 20 15-34 14-33 (109)
408 COG2991 Uncharacterized protei 20.0 1.6E+02 0.0034 19.8 3.1 23 24-46 7-29 (77)
409 COG0675 Transposase and inacti 20.0 87 0.0019 26.0 2.5 31 121-154 306-336 (364)
410 smart00109 C1 Protein kinase C 20.0 1E+02 0.0022 17.7 2.1 33 124-157 11-44 (49)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.6e-21 Score=166.20 Aligned_cols=85 Identities=35% Similarity=0.772 Sum_probs=68.6
Q ss_pred CCCHHHHhcCCCeeeccccccCCCCCCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCC-CcccCCCCC
Q 029203 95 GLDQAVINSYPKFQFTKESVSGNNNSNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGS-CPVCRNSPL 173 (197)
Q Consensus 95 ~l~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~t-CPlCR~~l~ 173 (197)
.+.+..++++|...|.+.... .. ...|+||||+|++||++|.|| |+|.||..|||+||..+.+ ||+||.++.
T Consensus 206 r~~k~~l~~~p~~~f~~~~~~-----~~-~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 206 RLIKRLLKKLPVRTFTKGDDE-----DA-TDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred hhHHHHHhhCCcEEecccccc-----CC-CceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 477889999999999877431 12 279999999999999999999 9999999999999988765 999999886
Q ss_pred CCCCCCCCccccc
Q 029203 174 PTPLSTPLQEVVP 186 (197)
Q Consensus 174 ~~~~~~~~~~~~~ 186 (197)
.......-.|-+|
T Consensus 279 ~~~~~~~~~e~tp 291 (348)
T KOG4628|consen 279 TDSGSEPVSEDTP 291 (348)
T ss_pred CCCCCCCccCCCc
Confidence 6544444344333
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.68 E-value=1.2e-17 Score=102.66 Aligned_cols=44 Identities=52% Similarity=1.174 Sum_probs=40.6
Q ss_pred CccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccC
Q 029203 125 TTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCR 169 (197)
Q Consensus 125 ~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR 169 (197)
.+|+||+++|.+++.+..++ |+|.||.+||.+|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 37999999999999999999 999999999999999999999997
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.52 E-value=8.7e-15 Score=119.89 Aligned_cols=77 Identities=25% Similarity=0.584 Sum_probs=58.1
Q ss_pred CCCCCHHHHhcCCCeeeccccccCCCCCCCCCCccccccccccCCc----ceeecCCCCCccchhhHHHHhhCCCCCccc
Q 029203 93 VVGLDQAVINSYPKFQFTKESVSGNNNSNNINTTCSICLCEYKDLE----MLRMMPECRHYFHLCCVDAWLKLNGSCPVC 168 (197)
Q Consensus 93 ~~~l~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~CaICL~~~~~~~----~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlC 168 (197)
.++.....++.+|.+........ ....+.+|+|||+.+.++. .+.+++.|+|.||.+||.+|+..+.+||+|
T Consensus 147 k~~~~~~~i~~lp~vl~~~e~~~----~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlC 222 (238)
T PHA02929 147 KGKNYKKFLKTIPSVLSEYEKLY----NRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVC 222 (238)
T ss_pred hcchhHHHHHhcchhhhhhhhhh----cCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCC
Confidence 35557888889998765433211 2345689999999987653 233455599999999999999999999999
Q ss_pred CCCCC
Q 029203 169 RNSPL 173 (197)
Q Consensus 169 R~~l~ 173 (197)
|..+.
T Consensus 223 R~~~~ 227 (238)
T PHA02929 223 RTPFI 227 (238)
T ss_pred CCEee
Confidence 99764
No 4
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.2e-14 Score=120.72 Aligned_cols=51 Identities=41% Similarity=1.046 Sum_probs=47.0
Q ss_pred CCCccccccccccCCcceeecCCCCCccchhhHHHHhh-CCCCCcccCCCCCC
Q 029203 123 INTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLK-LNGSCPVCRNSPLP 174 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~-~~~tCPlCR~~l~~ 174 (197)
.+.+|+|||++|..+|++++|| |.|.||..|+++|+. .+..||+||..+.|
T Consensus 322 ~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 3589999999999999999999 999999999999998 56689999998865
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.48 E-value=2.7e-14 Score=97.05 Aligned_cols=45 Identities=40% Similarity=0.993 Sum_probs=36.1
Q ss_pred CCccccccccccCC----------cceeecCCCCCccchhhHHHHhhCCCCCcccC
Q 029203 124 NTTCSICLCEYKDL----------EMLRMMPECRHYFHLCCVDAWLKLNGSCPVCR 169 (197)
Q Consensus 124 ~~~CaICL~~~~~~----------~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR 169 (197)
+..|+||+++|.+. -.+...+ |||.||..||.+||+.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 45699999999322 2455556 999999999999999999999998
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.4e-12 Score=109.75 Aligned_cols=53 Identities=34% Similarity=0.901 Sum_probs=44.2
Q ss_pred CCCCCcccccccc-ccCCc---------ceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCC
Q 029203 121 NNINTTCSICLCE-YKDLE---------MLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLP 174 (197)
Q Consensus 121 ~~~~~~CaICL~~-~~~~~---------~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 174 (197)
...+..|+|||++ |..+. +-..|| |||+||-+|+..|+++++|||+||.++.-
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~if 346 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVIF 346 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCcccc
Confidence 4557899999999 44431 346788 99999999999999999999999999653
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=7.2e-12 Score=103.75 Aligned_cols=52 Identities=29% Similarity=0.756 Sum_probs=45.0
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTP 176 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~ 176 (197)
......|.+||+...+. .-+| |||+||..||..|...+..||+||.+.-|+.
T Consensus 236 ~~a~~kC~LCLe~~~~p---SaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNP---SATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCCceEEEecCCCCC---CcCc-CcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 44568999999997666 5777 9999999999999999999999999887654
No 8
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.21 E-value=1.2e-11 Score=74.85 Aligned_cols=44 Identities=43% Similarity=1.092 Sum_probs=37.2
Q ss_pred ccccccccccCCcceeecCCCCCccchhhHHHHhhC-CCCCcccCCCC
Q 029203 126 TCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL-NGSCPVCRNSP 172 (197)
Q Consensus 126 ~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~-~~tCPlCR~~l 172 (197)
+|+||++.+ .+.+..++ |+|.||..|++.|++. +..||+||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 34556666 9999999999999987 77899999764
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.20 E-value=1.4e-11 Score=97.57 Aligned_cols=51 Identities=27% Similarity=0.669 Sum_probs=40.9
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhC----------------CCCCcccCCCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL----------------NGSCPVCRNSPLPT 175 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~----------------~~tCPlCR~~l~~~ 175 (197)
.....+|+||++.+.+. .+++ |||.||..||..|+.. +.+||+||..+...
T Consensus 15 ~~~~~~CpICld~~~dP---VvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 15 SGGDFDCNICLDQVRDP---VVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CCCccCCccCCCcCCCc---EEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 34568999999998765 4566 9999999999999852 34799999988554
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.18 E-value=1.6e-11 Score=73.26 Aligned_cols=39 Identities=44% Similarity=1.031 Sum_probs=33.3
Q ss_pred cccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCccc
Q 029203 127 CSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVC 168 (197)
Q Consensus 127 CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlC 168 (197)
|+||++.+.+ .+..++ |||.|+.+||..|++.+.+||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999998877 556777 99999999999999998899998
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.14 E-value=2.6e-11 Score=76.25 Aligned_cols=46 Identities=33% Similarity=0.832 Sum_probs=38.7
Q ss_pred CCccccccccccCCcceeecCCCCCc-cchhhHHHHhhCCCCCcccCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHY-FHLCCVDAWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~-FH~~CI~~Wl~~~~tCPlCR~~l~ 173 (197)
+..|.||++...+ +..+| |||. |+..|+..|+....+||+||+++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4689999998544 67788 9999 999999999999999999999873
No 12
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=6e-11 Score=95.65 Aligned_cols=51 Identities=31% Similarity=0.649 Sum_probs=40.6
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCC---CCCcccCCCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLN---GSCPVCRNSPLPT 175 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~---~tCPlCR~~l~~~ 175 (197)
....++|.|||+.-++. | ++. |||+||+.||-+||..+ +.||+||..|..+
T Consensus 44 ~~~~FdCNICLd~akdP--V-vTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP--V-VTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCCceeeeeeccccCCC--E-Eee-cccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 46679999999985554 4 444 99999999999999654 3689999987544
No 13
>PHA02926 zinc finger-like protein; Provisional
Probab=99.07 E-value=8.8e-11 Score=94.26 Aligned_cols=52 Identities=23% Similarity=0.721 Sum_probs=40.2
Q ss_pred CCCCCccccccccccCC-----cceeecCCCCCccchhhHHHHhhCC------CCCcccCCCC
Q 029203 121 NNINTTCSICLCEYKDL-----EMLRMMPECRHYFHLCCVDAWLKLN------GSCPVCRNSP 172 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~-----~~vr~l~~C~H~FH~~CI~~Wl~~~------~tCPlCR~~l 172 (197)
.+.+.+|+||||..-+. ..-.+|++|+|.||..||..|...+ .+||+||..+
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 34568999999986432 1234666799999999999999753 3599999965
No 14
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=8.3e-11 Score=91.23 Aligned_cols=56 Identities=25% Similarity=0.520 Sum_probs=46.3
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTPL 177 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~~ 177 (197)
....-..|+|||+.|.+...+ ..+|||+||+.||..-++...+||+|++.|..+.+
T Consensus 127 ~~~~~~~CPiCl~~~sek~~v--sTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~ 182 (187)
T KOG0320|consen 127 RKEGTYKCPICLDSVSEKVPV--STKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQF 182 (187)
T ss_pred ccccccCCCceecchhhcccc--ccccchhHHHHHHHHHHHhCCCCCCcccccchhhh
Confidence 344558999999999887553 23599999999999999999999999998876544
No 15
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.03 E-value=1.7e-10 Score=79.76 Aligned_cols=49 Identities=33% Similarity=0.822 Sum_probs=38.0
Q ss_pred CCCcccccccccc--------CCc--ceeecCCCCCccchhhHHHHhhC---CCCCcccCCCC
Q 029203 123 INTTCSICLCEYK--------DLE--MLRMMPECRHYFHLCCVDAWLKL---NGSCPVCRNSP 172 (197)
Q Consensus 123 ~~~~CaICL~~~~--------~~~--~vr~l~~C~H~FH~~CI~~Wl~~---~~tCPlCR~~l 172 (197)
.++.|.||...|+ +|| .+..- .|+|.||..||.+||.. +.+||+||+..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeec-cCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 3778999999986 222 23333 49999999999999975 46899999865
No 16
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.2e-10 Score=106.58 Aligned_cols=54 Identities=30% Similarity=0.699 Sum_probs=46.9
Q ss_pred CCCCccccccccccCCcc--eeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCCC
Q 029203 122 NINTTCSICLCEYKDLEM--LRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTP 176 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~--vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~ 176 (197)
.....|.||+|++..+.. ...++ |+|+||..|+..|+++.++||.||..+....
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~ 344 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYDYV 344 (543)
T ss_pred hcCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhccc
Confidence 347899999999998765 67888 9999999999999999999999999665443
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=99.00 E-value=3.3e-10 Score=69.35 Aligned_cols=44 Identities=30% Similarity=0.754 Sum_probs=38.5
Q ss_pred ccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCC
Q 029203 126 TCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRN 170 (197)
Q Consensus 126 ~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~ 170 (197)
.|.||++.|.+....++++ |||+|+..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 5999999996666788887 9999999999999866779999985
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.99 E-value=2.8e-10 Score=68.43 Aligned_cols=39 Identities=38% Similarity=1.008 Sum_probs=33.8
Q ss_pred cccccccccCCcceeecCCCCCccchhhHHHHhh--CCCCCccc
Q 029203 127 CSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLK--LNGSCPVC 168 (197)
Q Consensus 127 CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~--~~~tCPlC 168 (197)
|+||++.+.+.. ..++ |||.|+..||.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999988764 5677 999999999999998 45589998
No 19
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.93 E-value=7.2e-10 Score=64.63 Aligned_cols=38 Identities=47% Similarity=1.142 Sum_probs=32.3
Q ss_pred cccccccccCCcceeecCCCCCccchhhHHHHhh-CCCCCccc
Q 029203 127 CSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLK-LNGSCPVC 168 (197)
Q Consensus 127 CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~-~~~tCPlC 168 (197)
|+||++. ......++ |+|.||..|++.|++ .+.+||+|
T Consensus 1 C~iC~~~---~~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE---LKDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC---CCCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899998 34567777 999999999999998 66689987
No 20
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.89 E-value=1.9e-09 Score=70.55 Aligned_cols=47 Identities=23% Similarity=0.421 Sum_probs=40.6
Q ss_pred CccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 125 TTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 125 ~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
..|+||++.+.++ ..++ |||.|+..||.+|+..+.+||+|+..+..+
T Consensus 2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~ 48 (63)
T smart00504 2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTHE 48 (63)
T ss_pred cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCChh
Confidence 5799999998876 4567 999999999999999889999999877443
No 21
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.87 E-value=1.4e-09 Score=65.98 Aligned_cols=38 Identities=42% Similarity=0.881 Sum_probs=29.3
Q ss_pred cccccccccCCcceeecCCCCCccchhhHHHHhhCC----CCCccc
Q 029203 127 CSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLN----GSCPVC 168 (197)
Q Consensus 127 CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~----~tCPlC 168 (197)
|+||++.|.+. ..|+ |||.|+..||..|++.. ..||.|
T Consensus 1 CpiC~~~~~~P---v~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999988 4666 99999999999999654 369988
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.78 E-value=5.3e-09 Score=91.65 Aligned_cols=54 Identities=24% Similarity=0.531 Sum_probs=44.9
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTPLS 178 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~~~ 178 (197)
......|+||++.|... .+++ |||.||..||..|+.....||+||..+....+.
T Consensus 23 Le~~l~C~IC~d~~~~P---vitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr 76 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVP---VLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLR 76 (397)
T ss_pred cccccCCCcCchhhhCc---cCCC-CCCchhHHHHHHHHhCCCCCCCCCCccccccCc
Confidence 34568999999999765 3567 999999999999999888999999987654443
No 23
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.2e-09 Score=89.84 Aligned_cols=55 Identities=20% Similarity=0.532 Sum_probs=45.4
Q ss_pred CCCCCccccccccccCCc-------ceeecCCCCCccchhhHHHHh--hCCCCCcccCCCCCCCC
Q 029203 121 NNINTTCSICLCEYKDLE-------MLRMMPECRHYFHLCCVDAWL--KLNGSCPVCRNSPLPTP 176 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~-------~vr~l~~C~H~FH~~CI~~Wl--~~~~tCPlCR~~l~~~~ 176 (197)
.-++..|+||-..+.... +...|. |+|.||..||.-|- -.+++||+||..+..+.
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~r 284 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKR 284 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHhh
Confidence 446789999999887655 677887 99999999999997 56779999999885543
No 24
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.65 E-value=1.9e-08 Score=62.93 Aligned_cols=42 Identities=33% Similarity=0.881 Sum_probs=32.4
Q ss_pred ccccccccccCCcceeecCCCC-----CccchhhHHHHhhCC--CCCcccC
Q 029203 126 TCSICLCEYKDLEMLRMMPECR-----HYFHLCCVDAWLKLN--GSCPVCR 169 (197)
Q Consensus 126 ~CaICL~~~~~~~~vr~l~~C~-----H~FH~~CI~~Wl~~~--~tCPlCR 169 (197)
.|.||++. .+++....+| |. |.||..|+.+|+..+ .+||+|+
T Consensus 1 ~CrIC~~~-~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDE-GDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCC-CCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 48999994 3344445778 85 999999999999654 4899995
No 25
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=4.7e-08 Score=86.39 Aligned_cols=53 Identities=30% Similarity=0.696 Sum_probs=41.2
Q ss_pred CCCCCccccccccccCCc---c-----------eeecCCCCCccchhhHHHHhh-CCCCCcccCCCCCC
Q 029203 121 NNINTTCSICLCEYKDLE---M-----------LRMMPECRHYFHLCCVDAWLK-LNGSCPVCRNSPLP 174 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~---~-----------vr~l~~C~H~FH~~CI~~Wl~-~~~tCPlCR~~l~~ 174 (197)
......|+|||.+++-.. . -..+| |.|+||..|+..|.. .+-.||.||.+|.+
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 445679999999875222 1 22457 999999999999998 55599999998854
No 26
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.9e-08 Score=82.61 Aligned_cols=52 Identities=33% Similarity=0.723 Sum_probs=42.8
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHH-HhhCCCC-CcccCCCCCCCCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDA-WLKLNGS-CPVCRNSPLPTPL 177 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~-Wl~~~~t-CPlCR~~l~~~~~ 177 (197)
..+..|+||++..... ..++ |||+||..||.. |-.++.- ||+||+.+-|+..
T Consensus 213 ~~d~kC~lC~e~~~~p---s~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 213 LADYKCFLCLEEPEVP---SCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccceeeeecccCCc---cccc-ccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 4578999999986665 5666 999999999999 8877765 9999998877543
No 27
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.59 E-value=3.9e-08 Score=66.56 Aligned_cols=28 Identities=39% Similarity=0.904 Sum_probs=26.1
Q ss_pred CCCCccchhhHHHHhhCCCCCcccCCCC
Q 029203 145 ECRHYFHLCCVDAWLKLNGSCPVCRNSP 172 (197)
Q Consensus 145 ~C~H~FH~~CI~~Wl~~~~tCPlCR~~l 172 (197)
.|+|.||..||.+||..+..||++|+..
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence 3999999999999999999999999865
No 28
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.4e-08 Score=68.18 Aligned_cols=48 Identities=35% Similarity=0.813 Sum_probs=35.9
Q ss_pred CCcccccccccc--------CCc--ceeecCCCCCccchhhHHHHhhC---CCCCcccCCCC
Q 029203 124 NTTCSICLCEYK--------DLE--MLRMMPECRHYFHLCCVDAWLKL---NGSCPVCRNSP 172 (197)
Q Consensus 124 ~~~CaICL~~~~--------~~~--~vr~l~~C~H~FH~~CI~~Wl~~---~~tCPlCR~~l 172 (197)
++.|-||...|+ ++| .+..- .|.|.||..||.+|+.. +..||+||+..
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWG-YCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHH-HHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 458999998885 333 23222 49999999999999954 45799999864
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.48 E-value=9.7e-08 Score=58.04 Aligned_cols=38 Identities=32% Similarity=0.673 Sum_probs=22.3
Q ss_pred cccccccccCCc-ceeecCCCCCccchhhHHHHhhCC----CCCc
Q 029203 127 CSICLCEYKDLE-MLRMMPECRHYFHLCCVDAWLKLN----GSCP 166 (197)
Q Consensus 127 CaICL~~~~~~~-~vr~l~~C~H~FH~~CI~~Wl~~~----~tCP 166 (197)
|+||.+ |...+ .-.+|+ |||.|+.+||.+|+... .+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 86544 446788 99999999999999743 2687
No 30
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.6e-07 Score=83.48 Aligned_cols=51 Identities=27% Similarity=0.535 Sum_probs=39.6
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhC-----CCCCcccCCCCCCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL-----NGSCPVCRNSPLPTPLS 178 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~-----~~tCPlCR~~l~~~~~~ 178 (197)
+..|+|||++.... ..+ .|||+||..||.+++.. ...||+||..+-++.+.
T Consensus 186 ~~~CPICL~~~~~p---~~t-~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~ 241 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRT-NCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLL 241 (513)
T ss_pred CCcCCcccCCCCcc---ccc-ccCceeeHHHHHHHHhhhcccCCccCCchhhhcccccee
Confidence 67999999986554 233 49999999999998743 34899999988775443
No 31
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.39 E-value=7e-08 Score=64.94 Aligned_cols=49 Identities=31% Similarity=0.722 Sum_probs=23.5
Q ss_pred CCccccccccccCCcc--eeec--CCCCCccchhhHHHHhhC----C-------CCCcccCCCC
Q 029203 124 NTTCSICLCEYKDLEM--LRMM--PECRHYFHLCCVDAWLKL----N-------GSCPVCRNSP 172 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~--vr~l--~~C~H~FH~~CI~~Wl~~----~-------~tCPlCR~~l 172 (197)
+.+|.||++.+.+++. ..+. +.|++.||..|+.+||.. + .+||.|+.+|
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 4689999998763332 2333 269999999999999942 1 2699999876
No 32
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.33 E-value=2.5e-07 Score=62.70 Aligned_cols=51 Identities=22% Similarity=0.412 Sum_probs=38.8
Q ss_pred CCCccccccccccCCcceeecCCCCCccchhhHHHHhhC-CCCCcccCCCCCCCCC
Q 029203 123 INTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL-NGSCPVCRNSPLPTPL 177 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~-~~tCPlCR~~l~~~~~ 177 (197)
+.+.|+|+.+-+.+. .+++ +||.|.+.||..|+.. +.+||+|+..+....+
T Consensus 3 ~~f~CpIt~~lM~dP---Vi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l 54 (73)
T PF04564_consen 3 DEFLCPITGELMRDP---VILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSESDL 54 (73)
T ss_dssp GGGB-TTTSSB-SSE---EEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGS
T ss_pred cccCCcCcCcHhhCc---eeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccc
Confidence 357999999998887 4667 9999999999999988 7899999988765443
No 33
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.30 E-value=6.9e-07 Score=75.77 Aligned_cols=54 Identities=26% Similarity=0.583 Sum_probs=40.3
Q ss_pred CCcccccccc-ccCCc-ceeecCCCCCccchhhHHHHh-hCCCCCcccCCCCCCCCCC
Q 029203 124 NTTCSICLCE-YKDLE-MLRMMPECRHYFHLCCVDAWL-KLNGSCPVCRNSPLPTPLS 178 (197)
Q Consensus 124 ~~~CaICL~~-~~~~~-~vr~l~~C~H~FH~~CI~~Wl-~~~~tCPlCR~~l~~~~~~ 178 (197)
+..|+||+.+ |...+ ++.+.+ |||.||..|++..+ .....||.|+..+-...+.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr 59 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR 59 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence 4689999996 44444 333445 99999999999965 4456899999988776654
No 34
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.26 E-value=2.9e-07 Score=78.21 Aligned_cols=53 Identities=25% Similarity=0.582 Sum_probs=45.4
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCCCCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTPLS 178 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~~~ 178 (197)
+.-..|.||.+-|... ..+| |+|-||.-||..+|..+..||.|+..+-.+.+.
T Consensus 21 D~lLRC~IC~eyf~ip---~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr 73 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIP---MITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLR 73 (442)
T ss_pred HHHHHHhHHHHHhcCc---eecc-ccchHHHHHHHHHhccCCCCCceecccchhhhh
Confidence 3457999999999887 5667 999999999999999999999999987665554
No 35
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=8e-07 Score=63.11 Aligned_cols=48 Identities=29% Similarity=0.652 Sum_probs=35.6
Q ss_pred CCcccccccccc-------------CCc-ceeecCCCCCccchhhHHHHhhCCCCCcccCCCC
Q 029203 124 NTTCSICLCEYK-------------DLE-MLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSP 172 (197)
Q Consensus 124 ~~~CaICL~~~~-------------~~~-~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l 172 (197)
-+.|+||...+- .++ .|.-- .|+|.||..||.+||+.+..||||.++-
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG-~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWG-VCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEee-ecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 568998865541 111 23333 4999999999999999999999997653
No 36
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.18 E-value=4.4e-07 Score=85.58 Aligned_cols=53 Identities=23% Similarity=0.635 Sum_probs=39.5
Q ss_pred CCCCCccccccccccCCc---ceeecCCCCCccchhhHHHHhhC--CCCCcccCCCCC
Q 029203 121 NNINTTCSICLCEYKDLE---MLRMMPECRHYFHLCCVDAWLKL--NGSCPVCRNSPL 173 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~---~vr~l~~C~H~FH~~CI~~Wl~~--~~tCPlCR~~l~ 173 (197)
.+..++||||...+..-| +-...+.|.|-||..|+-+|++. +.+||+||.++.
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 355789999988776222 12233459999999999999965 458999998763
No 37
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.16 E-value=9.8e-07 Score=73.63 Aligned_cols=51 Identities=29% Similarity=0.613 Sum_probs=42.2
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTP 176 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~ 176 (197)
+.-..|-||-+-|... ..++ |||-||.-||...|..+..||+||.+.....
T Consensus 23 Ds~lrC~IC~~~i~ip---~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~esr 73 (391)
T COG5432 23 DSMLRCRICDCRISIP---CETT-CGHTFCSLCIRRHLGTQPFCPVCREDPCESR 73 (391)
T ss_pred hhHHHhhhhhheeecc---eecc-cccchhHHHHHHHhcCCCCCccccccHHhhh
Confidence 3456899998887765 3555 9999999999999999999999999765443
No 38
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=8.4e-07 Score=73.34 Aligned_cols=46 Identities=35% Similarity=0.735 Sum_probs=40.4
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRN 170 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~ 170 (197)
..+...|+||++.|.+. ..++ |+|.|+..||..|+.....||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccCC
Confidence 45678999999999998 7888 9999999999999985558999993
No 39
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.15 E-value=1.2e-06 Score=76.84 Aligned_cols=52 Identities=33% Similarity=0.735 Sum_probs=41.8
Q ss_pred CCCCCCccccccccccCCc-ceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLE-MLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLP 174 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~-~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 174 (197)
...+..+|+||||.+.+.. .++... |.|-||..|+..|.. .+||+||.-..|
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w~~--~scpvcR~~q~p 223 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKWWD--SSCPVCRYCQSP 223 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeee-cccccchHHHhhccc--CcChhhhhhcCc
Confidence 5567789999999998665 445555 999999999999964 589999986654
No 40
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.6e-06 Score=75.31 Aligned_cols=50 Identities=32% Similarity=0.739 Sum_probs=38.4
Q ss_pred CCCccccccccccC-CcceeecCCCCCccchhhHHHHhhC--CCCCcccCCCC
Q 029203 123 INTTCSICLCEYKD-LEMLRMMPECRHYFHLCCVDAWLKL--NGSCPVCRNSP 172 (197)
Q Consensus 123 ~~~~CaICL~~~~~-~~~vr~l~~C~H~FH~~CI~~Wl~~--~~tCPlCR~~l 172 (197)
....|+|||+.|+- ++...+.+.|||.|..+||+.||.+ ...||+|..+-
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 35799999999984 4444444459999999999999952 23699997754
No 41
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=98.08 E-value=9.4e-07 Score=73.97 Aligned_cols=53 Identities=32% Similarity=0.803 Sum_probs=44.7
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhC-----------------------CCCCcccCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL-----------------------NGSCPVCRNSPL 173 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~-----------------------~~tCPlCR~~l~ 173 (197)
+......|.|||.-|.+++.+.+++ |-|+||..|+.++|.. +..||+||..+.
T Consensus 111 nn~p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 111 NNHPNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCCCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 4455679999999999999999999 9999999999888731 136999999874
No 42
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.6e-06 Score=74.92 Aligned_cols=47 Identities=28% Similarity=0.770 Sum_probs=35.2
Q ss_pred CccccccccccCC-cceeecCCCCCccchhhHHHHhhCC---CCCcccCCCC
Q 029203 125 TTCSICLCEYKDL-EMLRMMPECRHYFHLCCVDAWLKLN---GSCPVCRNSP 172 (197)
Q Consensus 125 ~~CaICL~~~~~~-~~vr~l~~C~H~FH~~CI~~Wl~~~---~tCPlCR~~l 172 (197)
-.|.|| +++.+. ..+.-+..|||+||..|+.+|+..- .+||.|+-.+
T Consensus 5 A~C~Ic-~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHIC-IDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEe-ccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 489999 555444 3555444599999999999999653 4799999444
No 43
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.01 E-value=1.1e-06 Score=81.56 Aligned_cols=53 Identities=26% Similarity=0.485 Sum_probs=45.5
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
.....|++||..|.++......+ |+|+||..||+.|-+.-.+||+||..+..-
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhhee
Confidence 44568999999998887777777 999999999999999999999999876443
No 44
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.98 E-value=1.3e-06 Score=57.06 Aligned_cols=52 Identities=25% Similarity=0.602 Sum_probs=24.9
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCCCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTPLSTP 180 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~~~~~ 180 (197)
...|++|.+-+.+. |. +.+|+|+|+..||..-+. ..||+|+.+...+.+..+
T Consensus 7 lLrCs~C~~~l~~p--v~-l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~~N 58 (65)
T PF14835_consen 7 LLRCSICFDILKEP--VC-LGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQIN 58 (65)
T ss_dssp TTS-SSS-S--SS---B----SSS--B-TTTGGGGTT--TB-SSS--B-S-SS----
T ss_pred hcCCcHHHHHhcCC--ce-eccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHHhh
Confidence 46899999987765 33 335999999999988554 359999998776666544
No 45
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=3.9e-06 Score=72.49 Aligned_cols=51 Identities=29% Similarity=0.817 Sum_probs=40.3
Q ss_pred CCCCccccccccccCCc----ceeecCCCCCccchhhHHHHh--hC-----CCCCcccCCCC
Q 029203 122 NINTTCSICLCEYKDLE----MLRMMPECRHYFHLCCVDAWL--KL-----NGSCPVCRNSP 172 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~----~vr~l~~C~H~FH~~CI~~Wl--~~-----~~tCPlCR~~l 172 (197)
..+.+|.|||+...+.. ....+|+|.|.|+..||..|- .+ ...||.||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 55789999999876543 134567899999999999999 44 35799999854
No 46
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=5.4e-06 Score=71.04 Aligned_cols=48 Identities=31% Similarity=0.755 Sum_probs=39.8
Q ss_pred CCCCccccccccccCCcceeecCCCCCc-cchhhHHHHhhCCCCCcccCCCCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHY-FHLCCVDAWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~-FH~~CI~~Wl~~~~tCPlCR~~l~ 173 (197)
+...+|.|||.+-.+ +.+|| |.|. .|..|.+.---++..||+||+++.
T Consensus 288 ~~gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchH
Confidence 557899999998443 47899 9996 788999987667889999999874
No 47
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=1.4e-06 Score=74.36 Aligned_cols=53 Identities=32% Similarity=0.639 Sum_probs=43.1
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhC-CCCCcccCCCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL-NGSCPVCRNSPLPT 175 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~-~~tCPlCR~~l~~~ 175 (197)
....+..|.|||+-+... +..+.|.|.||.+||..-+.. +.+||.||+.+..+
T Consensus 39 ~~~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred HhhhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 345578999999998776 444569999999999998865 56899999998654
No 48
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=7.9e-06 Score=62.84 Aligned_cols=31 Identities=23% Similarity=0.584 Sum_probs=28.5
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccch
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHL 152 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~ 152 (197)
.++.-||.||||+++.++++..|| |-.+||+
T Consensus 174 ~ddkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 174 KDDKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred cccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 455689999999999999999999 9999997
No 49
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=1.3e-05 Score=74.44 Aligned_cols=51 Identities=25% Similarity=0.570 Sum_probs=40.5
Q ss_pred CCCccccccccccCCcceeecCCCCCccchhhHHHHhh-CCCCCcccCCCCCCCCC
Q 029203 123 INTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLK-LNGSCPVCRNSPLPTPL 177 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~-~~~tCPlCR~~l~~~~~ 177 (197)
.-..|++|-..+.+. ++++|+|+||..||.+-+. ++..||.|...+-+..+
T Consensus 642 ~~LkCs~Cn~R~Kd~----vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv 693 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDA----VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDV 693 (698)
T ss_pred hceeCCCccCchhhH----HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence 356899999776663 4445999999999999884 56689999988866654
No 50
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=3.6e-05 Score=62.28 Aligned_cols=54 Identities=24% Similarity=0.642 Sum_probs=45.2
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhC--------CCCCcccCCCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL--------NGSCPVCRNSPLPT 175 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~--------~~tCPlCR~~l~~~ 175 (197)
+.+....|..|--.+..+|.+|.. |-|+||.+|+++|-.+ ...||.|-.++.|.
T Consensus 46 DsDY~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp 107 (299)
T KOG3970|consen 46 DSDYNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP 107 (299)
T ss_pred hcCCCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence 345678999999999999999864 9999999999999843 23799999888664
No 51
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=1.6e-05 Score=50.16 Aligned_cols=45 Identities=29% Similarity=0.660 Sum_probs=32.6
Q ss_pred CCccccccccccCCcceeecCCCCCc-cchhhHHHHh-hCCCCCcccCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHY-FHLCCVDAWL-KLNGSCPVCRNSP 172 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~-FH~~CI~~Wl-~~~~tCPlCR~~l 172 (197)
..+|.||+|.-.+. |.. .|||. .+.+|-.+-+ ..+..||+||+++
T Consensus 7 ~dECTICye~pvds--VlY--tCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 7 SDECTICYEHPVDS--VLY--TCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred ccceeeeccCcchH--HHH--HcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 47999999974443 322 39996 5778865544 4788999999975
No 52
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=4.6e-05 Score=64.04 Aligned_cols=49 Identities=27% Similarity=0.436 Sum_probs=39.1
Q ss_pred CCCccccccccccCCcceeecCCCCCccchhhHHHHhhC-CCCCcccCCCCCCC
Q 029203 123 INTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL-NGSCPVCRNSPLPT 175 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~-~~tCPlCR~~l~~~ 175 (197)
...+|+||+....-+ ..|+ |+|.||..||.--... ..+|++||.++...
T Consensus 6 ~~~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 6 KKKECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cCCcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 457999999886555 4666 9999999999886654 45799999988654
No 53
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.47 E-value=4.1e-05 Score=66.45 Aligned_cols=48 Identities=40% Similarity=0.818 Sum_probs=40.0
Q ss_pred CCCCccccccccccC-CcceeecCCCCCccchhhHHHHhhCCC--CCcccCC
Q 029203 122 NINTTCSICLCEYKD-LEMLRMMPECRHYFHLCCVDAWLKLNG--SCPVCRN 170 (197)
Q Consensus 122 ~~~~~CaICL~~~~~-~~~vr~l~~C~H~FH~~CI~~Wl~~~~--tCPlCR~ 170 (197)
+.+.-|..|=+.+-. ++.+.-|| |.|+||..|+.+.|.++. +||-||+
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 346789999888864 44678898 999999999999997765 7999984
No 54
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.44 E-value=7.2e-05 Score=66.09 Aligned_cols=52 Identities=29% Similarity=0.561 Sum_probs=43.6
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
.+....|++|+..+.+.-.. +. |||.|+..|+..|+..+..||.|+..+...
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~--~~-cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQT--TT-CGHRFCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred CcccccCccccccccCCCCC--CC-CCCcccccccchhhccCcCCcccccccchh
Confidence 35568999999998887332 34 999999999999999999999998887654
No 55
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.42 E-value=4.3e-05 Score=66.48 Aligned_cols=50 Identities=26% Similarity=0.652 Sum_probs=40.4
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhC--CCCCcccCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL--NGSCPVCRNSPL 173 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~--~~tCPlCR~~l~ 173 (197)
++..-..|-||-+. +..|+.-| |||+.|..|+..|-.. .++||.||..+-
T Consensus 365 MgsTFeLCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 365 MGSTFELCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred ccchHHHHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 44556789999775 44677888 9999999999999844 569999999774
No 56
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.39 E-value=0.0001 Score=47.51 Aligned_cols=43 Identities=28% Similarity=0.605 Sum_probs=29.0
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCC--CCCcc
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLN--GSCPV 167 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~--~tCPl 167 (197)
.....|+|.+..|+++ |+-.. |+|.|-++.|.+||..+ ..||+
T Consensus 9 ~~~~~CPiT~~~~~~P--V~s~~-C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDP--VKSKK-CGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSE--EEESS-S--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCC--cCcCC-CCCeecHHHHHHHHHhcCCCCCCC
Confidence 4467999999998865 55555 99999999999999443 36998
No 57
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=8.9e-05 Score=65.36 Aligned_cols=49 Identities=29% Similarity=0.662 Sum_probs=42.7
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLP 174 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 174 (197)
..+++|.||+.-+.+. ..+| |||-|+..||++-+.....||+||..+..
T Consensus 82 ~sef~c~vc~~~l~~p---v~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCC---cccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 5679999999988876 4667 99999999999988888889999998854
No 58
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.38 E-value=0.00011 Score=72.44 Aligned_cols=69 Identities=26% Similarity=0.523 Sum_probs=50.5
Q ss_pred hcCCCeeeccccccCCCCCCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCC----------CCCcccCCC
Q 029203 102 NSYPKFQFTKESVSGNNNSNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLN----------GSCPVCRNS 171 (197)
Q Consensus 102 ~~lp~~~~~~~~~~~~~~~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~----------~tCPlCR~~ 171 (197)
.-+|.+...+... ..+.+..|.||+.+--.......|- |+|+||..|...-|+++ -+||+|+.+
T Consensus 3469 ~CLPCl~Cdks~t-----kQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~ 3542 (3738)
T KOG1428|consen 3469 HCLPCLHCDKSAT-----KQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNK 3542 (3738)
T ss_pred hcccccccChhhh-----hcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccch
Confidence 3456655444322 3556789999999877777788887 99999999998766543 279999998
Q ss_pred CCCCC
Q 029203 172 PLPTP 176 (197)
Q Consensus 172 l~~~~ 176 (197)
+....
T Consensus 3543 InH~~ 3547 (3738)
T KOG1428|consen 3543 INHIV 3547 (3738)
T ss_pred hhhHH
Confidence 75543
No 59
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=97.34 E-value=6.8e-05 Score=56.21 Aligned_cols=38 Identities=16% Similarity=0.391 Sum_probs=30.8
Q ss_pred CCccccccccccCCcceeecCCCC------CccchhhHHHHhhCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECR------HYFHLCCVDAWLKLN 162 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~------H~FH~~CI~~Wl~~~ 162 (197)
..+|+||++.+.+.+-|..++ |+ |.||.+|+.+|-..+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhhc
Confidence 679999999999955566666 64 999999999995433
No 60
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=97.20 E-value=0.00023 Score=67.06 Aligned_cols=50 Identities=30% Similarity=0.708 Sum_probs=41.1
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhC-------CCCCcccCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL-------NGSCPVCRN 170 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~-------~~tCPlCR~ 170 (197)
.....+|.||.+.+...+.+--...|-|+||..||..|-.. ...||.|+.
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred hcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 34567999999999988877766679999999999999953 226999984
No 61
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0013 Score=54.89 Aligned_cols=52 Identities=19% Similarity=0.438 Sum_probs=39.2
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhC--CCCCcccCCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL--NGSCPVCRNSPLP 174 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~--~~tCPlCR~~l~~ 174 (197)
......+|++|-+.=.. .....+ |+|+||.-||..=+.. ..+||.|-.++.+
T Consensus 235 ~~t~~~~C~~Cg~~Pti--P~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTI--PHVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred cccCCceeeccCCCCCC--Ceeecc-ccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 56778999999776333 334444 9999999999986643 3589999887764
No 62
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.89 E-value=0.00082 Score=41.51 Aligned_cols=41 Identities=37% Similarity=1.010 Sum_probs=26.6
Q ss_pred cccccccccCCcceeecC-CCC---CccchhhHHHHhh--CCCCCccc
Q 029203 127 CSICLCEYKDLEMLRMMP-ECR---HYFHLCCVDAWLK--LNGSCPVC 168 (197)
Q Consensus 127 CaICL~~~~~~~~vr~l~-~C~---H~FH~~CI~~Wl~--~~~tCPlC 168 (197)
|-||++.-.+.+.+ +.| .|. ...|..|+.+|+. .+.+|++|
T Consensus 1 CrIC~~~~~~~~~l-i~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPL-ISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-E-E-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCce-ecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 67999987776633 344 233 3789999999996 44579987
No 63
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.87 E-value=0.00021 Score=60.78 Aligned_cols=51 Identities=29% Similarity=0.552 Sum_probs=43.0
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
.....|.+|-.-|.+...|. .|-|-||+.||...|....+||.|...+-..
T Consensus 13 n~~itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ccceehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 44679999999888876554 4999999999999999999999998876444
No 64
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.85 E-value=0.0011 Score=51.14 Aligned_cols=51 Identities=24% Similarity=0.612 Sum_probs=36.2
Q ss_pred CCCCCCccccccccccCCcceeecC-CCCC---ccchhhHHHHhhCC--CCCcccCCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMP-ECRH---YFHLCCVDAWLKLN--GSCPVCRNSPLP 174 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~-~C~H---~FH~~CI~~Wl~~~--~tCPlCR~~l~~ 174 (197)
....+..|=||.++-. +.. .| +|.. .-|.+|+..|+... .+|++|+++..-
T Consensus 4 ~s~~~~~CRIC~~~~~--~~~--~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 4 VSLMDKCCWICKDEYD--VVT--NYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred cCCCCCeeEecCCCCC--Ccc--CCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 3455789999998843 222 35 2444 67999999999654 479999987643
No 65
>PHA02862 5L protein; Provisional
Probab=96.74 E-value=0.00081 Score=50.92 Aligned_cols=47 Identities=19% Similarity=0.510 Sum_probs=34.7
Q ss_pred CCccccccccccCCcceeecCCC-----CCccchhhHHHHhhC--CCCCcccCCCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPEC-----RHYFHLCCVDAWLKL--NGSCPVCRNSPLPT 175 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C-----~H~FH~~CI~~Wl~~--~~tCPlCR~~l~~~ 175 (197)
...|=||+++-+++ + -| | ...-|.+|+.+|+.. +.+||+|+.+..-+
T Consensus 2 ~diCWIC~~~~~e~--~--~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 2 SDICWICNDVCDER--N--NF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CCEEEEecCcCCCC--c--cc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 35899999985433 3 34 5 368899999999964 44799999987443
No 66
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0016 Score=55.48 Aligned_cols=48 Identities=21% Similarity=0.445 Sum_probs=37.9
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRN 170 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~ 170 (197)
.......|+||+....++.-+-+ -|-+||..||..++..++.||+=-.
T Consensus 296 l~~~~~~CpvClk~r~Nptvl~v---SGyVfCY~Ci~~Yv~~~~~CPVT~~ 343 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNPTVLEV---SGYVFCYPCIFSYVVNYGHCPVTGY 343 (357)
T ss_pred CCCccccChhHHhccCCCceEEe---cceEEeHHHHHHHHHhcCCCCccCC
Confidence 34556799999999777643322 5999999999999999999997543
No 67
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.70 E-value=0.00063 Score=48.67 Aligned_cols=33 Identities=27% Similarity=0.730 Sum_probs=28.0
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHH
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVD 156 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~ 156 (197)
.....|++|-..+.. ....+.| |||+||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 456789999999987 5677888 99999999975
No 68
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.70 E-value=0.00088 Score=53.35 Aligned_cols=46 Identities=26% Similarity=0.562 Sum_probs=39.0
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNS 171 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~ 171 (197)
.-.+.|.||-.+|+.+ .++. |||.||..|...-++...+|-+|-+.
T Consensus 194 ~IPF~C~iCKkdy~sp---vvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 194 KIPFLCGICKKDYESP---VVTE-CGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred CCceeehhchhhccch---hhhh-cchhHHHHHHHHHhccCCcceecchh
Confidence 4457999999999987 4554 99999999999988888899999654
No 69
>PHA03096 p28-like protein; Provisional
Probab=96.59 E-value=0.001 Score=56.36 Aligned_cols=48 Identities=21% Similarity=0.482 Sum_probs=35.7
Q ss_pred CccccccccccCCc----ceeecCCCCCccchhhHHHHhhCC---C---CCcccCCCC
Q 029203 125 TTCSICLCEYKDLE----MLRMMPECRHYFHLCCVDAWLKLN---G---SCPVCRNSP 172 (197)
Q Consensus 125 ~~CaICL~~~~~~~----~vr~l~~C~H~FH~~CI~~Wl~~~---~---tCPlCR~~l 172 (197)
..|.|||+...... .-..|++|.|.|+..||..|-... . .||.|+..+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~ 236 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVI 236 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHH
Confidence 68999999887542 344777899999999999999543 2 455555544
No 70
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.0012 Score=57.75 Aligned_cols=48 Identities=25% Similarity=0.631 Sum_probs=38.9
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCC--------CCCcccCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLN--------GSCPVCRN 170 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~--------~tCPlCR~ 170 (197)
.....|.||+++..-......+| |+|+||+.|+..++..+ -.||-++-
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hhcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 34679999999977667888999 99999999999998543 26877654
No 71
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.39 E-value=0.0033 Score=53.13 Aligned_cols=53 Identities=28% Similarity=0.651 Sum_probs=39.6
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHh-hCCCCCccc-CCCCCCCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWL-KLNGSCPVC-RNSPLPTPLST 179 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl-~~~~tCPlC-R~~l~~~~~~~ 179 (197)
...|+.|-.-+.+. + .++.|+|.|+.+||..-| .....||.| |.+++-.++..
T Consensus 274 ~LkCplc~~Llrnp--~-kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~p 328 (427)
T COG5222 274 SLKCPLCHCLLRNP--M-KTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTP 328 (427)
T ss_pred cccCcchhhhhhCc--c-cCccccchHHHHHHhhhhhhccccCCCcccccchhhccCc
Confidence 47899998876665 2 336699999999999776 556799999 55666555443
No 72
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.37 E-value=0.0038 Score=38.66 Aligned_cols=44 Identities=25% Similarity=0.587 Sum_probs=22.6
Q ss_pred cccccccccCCc-ceeecCCCCCccchhhHHHHhh-CCCCCcccCCC
Q 029203 127 CSICLCEYKDLE-MLRMMPECRHYFHLCCVDAWLK-LNGSCPVCRNS 171 (197)
Q Consensus 127 CaICL~~~~~~~-~vr~l~~C~H~FH~~CI~~Wl~-~~~tCPlCR~~ 171 (197)
|++|.+++...+ .+.--+ |++..+..|...-++ ....||-||.+
T Consensus 1 cp~C~e~~d~~d~~~~PC~-Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCE-CGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SST-TS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCCCccccCc-CCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 789999995444 444444 899999999888775 47799999975
No 73
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=96.13 E-value=0.0045 Score=37.47 Aligned_cols=41 Identities=20% Similarity=0.492 Sum_probs=24.5
Q ss_pred cccccccccCCcceeecCCCCCccchhhHHHHhhCCC--CCccc
Q 029203 127 CSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNG--SCPVC 168 (197)
Q Consensus 127 CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~--tCPlC 168 (197)
|.+|-+-...|..-.... |+=.+|..|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~-C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRD-CNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCc-cCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888777776554433 999999999999997766 79987
No 74
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.00032 Score=60.88 Aligned_cols=55 Identities=22% Similarity=0.475 Sum_probs=47.5
Q ss_pred CCCCccccccccccCC-cceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCCCC
Q 029203 122 NINTTCSICLCEYKDL-EMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTPL 177 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~-~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~~ 177 (197)
.....|+||.+.+... +++..+- |||++|.+||.+||.....||-|+..|...++
T Consensus 194 slv~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~~ 249 (465)
T KOG0827|consen 194 SLVGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPKNGF 249 (465)
T ss_pred HHHhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhhhhH
Confidence 4467999999999887 7888887 99999999999999988899999998865544
No 75
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.03 E-value=0.003 Score=57.09 Aligned_cols=49 Identities=27% Similarity=0.607 Sum_probs=37.4
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhh-----CCCCCcccCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLK-----LNGSCPVCRNSP 172 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~-----~~~tCPlCR~~l 172 (197)
......+|-+|-++-++. .+.. |.|.||+-||.+++. .+.+||.|-..|
T Consensus 532 enk~~~~C~lc~d~aed~---i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAEDY---IESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred cccCceeecccCChhhhh---Hhhh-hhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 445678999998874443 4555 999999999999884 345899996655
No 76
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.0042 Score=52.30 Aligned_cols=47 Identities=23% Similarity=0.460 Sum_probs=39.7
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSP 172 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l 172 (197)
.-.+.|-||-..|..+ .++. |+|.||..|...=++....|++|-+..
T Consensus 239 ~~Pf~c~icr~~f~~p---Vvt~-c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 239 LLPFKCFICRKYFYRP---VVTK-CGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred cCCccccccccccccc---hhhc-CCceeehhhhccccccCCcceeccccc
Confidence 4467899999999987 4554 999999999999888888999997654
No 77
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.0067 Score=52.38 Aligned_cols=46 Identities=33% Similarity=0.590 Sum_probs=33.8
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSP 172 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l 172 (197)
.......|.||+++..+ ...+| |||.=+ |..-- +...+||+||..+
T Consensus 301 ~~~~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI 346 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRI 346 (355)
T ss_pred ccCCCCceEEecCCccc---eeeec-CCcEEE--chHHH-hhCCCCchhHHHH
Confidence 34557899999999777 46777 999955 65552 3344699999876
No 78
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.69 E-value=0.0046 Score=50.68 Aligned_cols=43 Identities=28% Similarity=0.641 Sum_probs=32.2
Q ss_pred ccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCC
Q 029203 126 TCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSP 172 (197)
Q Consensus 126 ~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l 172 (197)
-|..|.-- -.+++...+. |.|+||..|...- ....||+||..+
T Consensus 5 hCn~C~~~-~~~~~f~LTa-C~HvfC~~C~k~~--~~~~C~lCkk~i 47 (233)
T KOG4739|consen 5 HCNKCFRF-PSQDPFFLTA-CRHVFCEPCLKAS--SPDVCPLCKKSI 47 (233)
T ss_pred Eecccccc-CCCCceeeee-chhhhhhhhcccC--Ccccccccccee
Confidence 46666543 3478888887 9999999997652 223899999986
No 79
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=0.012 Score=48.43 Aligned_cols=53 Identities=11% Similarity=0.148 Sum_probs=47.2
Q ss_pred CCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 123 INTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
....|+||.+.+.+...+.+|..|||+|..+|..+.+..-..||+|-.++-..
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence 45789999999999998888888999999999999999999999998877544
No 80
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=95.32 E-value=0.023 Score=36.04 Aligned_cols=42 Identities=26% Similarity=0.590 Sum_probs=34.8
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcc
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPV 167 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPl 167 (197)
.....|.+|=+.|.+++.+.+-|.|+-.+|++|-+. ...|-.
T Consensus 3 ~~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~ 44 (54)
T PF14446_consen 3 YEGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCIN 44 (54)
T ss_pred ccCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEe
Confidence 346789999999999999999999999999999554 555644
No 81
>PF15102 TMEM154: TMEM154 protein family
Probab=95.25 E-value=0.02 Score=43.64 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=14.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhheecccc
Q 029203 13 TNIGLGYSIAIALGFLVLLSTVLLASYICCRRNN 46 (197)
Q Consensus 13 ~~~~~~~~I~i~i~~~vli~~i~l~~~~~~~~~~ 46 (197)
++..|.+.|+|-+.++++++++++++++.++|++
T Consensus 53 ~q~efiLmIlIP~VLLvlLLl~vV~lv~~~kRkr 86 (146)
T PF15102_consen 53 SQLEFILMILIPLVLLVLLLLSVVCLVIYYKRKR 86 (146)
T ss_pred CCcceEEEEeHHHHHHHHHHHHHHHheeEEeecc
Confidence 3445555555543333333333333333333433
No 82
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.84 E-value=0.037 Score=46.31 Aligned_cols=55 Identities=16% Similarity=0.314 Sum_probs=43.1
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
.......|+|...+|........+-.|||+|-..+|.+- .....||+|-.++...
T Consensus 109 ~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 109 NSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEE 163 (260)
T ss_pred cCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccC
Confidence 356678999999999766666666559999999999996 3355799998877543
No 83
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.71 E-value=0.045 Score=47.30 Aligned_cols=48 Identities=27% Similarity=0.632 Sum_probs=37.1
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHH--HhhCCCCCcccCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDA--WLKLNGSCPVCRNS 171 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~--Wl~~~~tCPlCR~~ 171 (197)
..++...|.||-+... -+.++| |+|..|.-|-.. -|-..+.||+||..
T Consensus 57 tDEen~~C~ICA~~~T---Ys~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 57 TDEENMNCQICAGSTT---YSARYP-CGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred cccccceeEEecCCce---EEEecc-CCchHHHHHHHHHHHHHhccCCCccccc
Confidence 4566789999977643 346888 999999999865 34567899999985
No 84
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=94.64 E-value=0.019 Score=48.32 Aligned_cols=46 Identities=24% Similarity=0.540 Sum_probs=38.4
Q ss_pred CCccccccccccCCc-ceeecCCCCCccchhhHHHHhhCCCCCcccCC
Q 029203 124 NTTCSICLCEYKDLE-MLRMMPECRHYFHLCCVDAWLKLNGSCPVCRN 170 (197)
Q Consensus 124 ~~~CaICL~~~~~~~-~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~ 170 (197)
...|+||.+.+-... .+..++ |||.-|..|+......+-+||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence 345999999887655 455677 9999999999999887899999977
No 85
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=0.028 Score=44.19 Aligned_cols=30 Identities=33% Similarity=0.877 Sum_probs=24.1
Q ss_pred CCCCccchhhHHHHhhC-----------CCCCcccCCCCCC
Q 029203 145 ECRHYFHLCCVDAWLKL-----------NGSCPVCRNSPLP 174 (197)
Q Consensus 145 ~C~H~FH~~CI~~Wl~~-----------~~tCPlCR~~l~~ 174 (197)
.||.-||.-|+..||+. -..||+|-.++..
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 49999999999999942 1379999887643
No 86
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.43 E-value=0.018 Score=55.05 Aligned_cols=37 Identities=22% Similarity=0.414 Sum_probs=30.0
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHh
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWL 159 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl 159 (197)
.+.+++|.+|.-.+... .-.+-| |||.||.+||.+-.
T Consensus 814 ~ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred ecCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 35578999999887765 566777 99999999997754
No 87
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.031 Score=48.38 Aligned_cols=50 Identities=20% Similarity=0.480 Sum_probs=41.5
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 173 (197)
...++..|+||... .-.....| |+|.=|+.||.+-+.+.+.|=.|+.-+.
T Consensus 418 p~sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 418 PDSEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred CCcccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceee
Confidence 44678899999765 33345677 9999999999999999999999998765
No 88
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.27 E-value=0.021 Score=54.37 Aligned_cols=42 Identities=24% Similarity=0.599 Sum_probs=32.4
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNS 171 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~ 171 (197)
...|..|-..++-+ ...-- |||.||.+|+. .....||-|+.+
T Consensus 840 ~skCs~C~~~LdlP--~VhF~-CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 840 VSKCSACEGTLDLP--FVHFL-CGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeeecccCCccccc--eeeee-cccHHHHHhhc---cCcccCCccchh
Confidence 36999998777655 33333 99999999998 455689999873
No 89
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=94.16 E-value=0.042 Score=40.81 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhheeccccCCC
Q 029203 19 YSIAIALGFLVLLSTVLLASYICCRRNNSSH 49 (197)
Q Consensus 19 ~~I~i~i~~~vli~~i~l~~~~~~~~~~~~~ 49 (197)
-+++|++|++.-+..++++++||+||++.+.
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3555555555444445555566666655443
No 90
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.12 E-value=0.038 Score=46.81 Aligned_cols=48 Identities=27% Similarity=0.609 Sum_probs=38.4
Q ss_pred CCccccccccccCCcce---eecCCCCCccchhhHHHHhhCCC-CCcccCCCC
Q 029203 124 NTTCSICLCEYKDLEML---RMMPECRHYFHLCCVDAWLKLNG-SCPVCRNSP 172 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~v---r~l~~C~H~FH~~CI~~Wl~~~~-tCPlCR~~l 172 (197)
..+|-||-++|..++.. +.|. |||-|+..|+.+-+.+.. .||.||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence 45899999999977532 4555 999999999998776544 799999974
No 91
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.99 E-value=0.032 Score=35.44 Aligned_cols=44 Identities=20% Similarity=0.440 Sum_probs=31.6
Q ss_pred CccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCC
Q 029203 125 TTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLP 174 (197)
Q Consensus 125 ~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 174 (197)
..|-.|... +.+-.++| |+|+.+..|.+- .+-+-||+|-.++..
T Consensus 8 ~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~--~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 8 QPCVFCGFV---GTKGTVLP-CGHLICDNCFPG--ERYNGCPFCGTPFEF 51 (55)
T ss_pred eeEEEcccc---cccccccc-ccceeeccccCh--hhccCCCCCCCcccC
Confidence 455555443 44457888 999999999876 455679999887754
No 92
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=93.91 E-value=0.023 Score=42.52 Aligned_cols=7 Identities=29% Similarity=0.947 Sum_probs=2.5
Q ss_pred hheeccc
Q 029203 39 YICCRRN 45 (197)
Q Consensus 39 ~~~~~~~ 45 (197)
++|+.++
T Consensus 19 ~~~~~rR 25 (130)
T PF12273_consen 19 FYCHNRR 25 (130)
T ss_pred HHHHHHH
Confidence 3333333
No 93
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=0.01 Score=49.96 Aligned_cols=41 Identities=24% Similarity=0.603 Sum_probs=29.6
Q ss_pred CCccccccccccCCcceeecCCCCCcc-chhhHHHHhhCCCCCcccCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYF-HLCCVDAWLKLNGSCPVCRNSP 172 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~F-H~~CI~~Wl~~~~tCPlCR~~l 172 (197)
...|+|||+. ......|+ |||.. |..|-.. -..||+||+.+
T Consensus 300 ~~LC~ICmDa---P~DCvfLe-CGHmVtCt~CGkr----m~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDA---PRDCVFLE-CGHMVTCTKCGKR----MNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcC---CcceEEee-cCcEEeehhhccc----cccCchHHHHH
Confidence 5789999987 44457888 99964 4456433 23899999865
No 94
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.65 E-value=0.027 Score=53.19 Aligned_cols=46 Identities=28% Similarity=0.662 Sum_probs=35.5
Q ss_pred CccccccccccCCcceeecCCCCCccchhhHHHHhhCC--CCCcccCCCCCCC
Q 029203 125 TTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLN--GSCPVCRNSPLPT 175 (197)
Q Consensus 125 ~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~--~tCPlCR~~l~~~ 175 (197)
..|.||++ .+.....+ |+|.|+.+|+..-+... ..||+||..+..+
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 79999999 34445565 99999999999877542 3699999876443
No 95
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=0.03 Score=47.61 Aligned_cols=45 Identities=29% Similarity=0.655 Sum_probs=30.9
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 173 (197)
...|--|=-.+. ---|+.| |.|+||.+|... ..-+.||+|-..|.
T Consensus 90 VHfCd~Cd~PI~--IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 90 VHFCDRCDFPIA--IYGRMIP-CKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred eEeecccCCcce--eeecccc-cchhhhhhhhhc--CccccCcCcccHHH
Confidence 456776633322 1236788 999999999765 44568999977664
No 96
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.38 E-value=0.023 Score=56.23 Aligned_cols=46 Identities=26% Similarity=0.649 Sum_probs=38.5
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRN 170 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~ 170 (197)
.....|.||++.+.+..-+. .|||.|+..|+..|+..+..||.|+.
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~---~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIA---GCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred hcccchHHHHHHHHhcCCee---eechhHhhhHHHHHHHHhccCcchhh
Confidence 44569999999988543333 39999999999999999999999984
No 97
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=93.31 E-value=0.093 Score=49.95 Aligned_cols=69 Identities=23% Similarity=0.525 Sum_probs=49.6
Q ss_pred CCCCCCccccccccccCCcceeecCCCC---CccchhhHHHHhhCCC--CCcccCCCCCCCC-CCCCCcccccCc
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECR---HYFHLCCVDAWLKLNG--SCPVCRNSPLPTP-LSTPLQEVVPLS 188 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~---H~FH~~CI~~Wl~~~~--tCPlCR~~l~~~~-~~~~~~~~~~~~ 188 (197)
.++++..|-||..+=.+++++-.--+|. ...|.+|+.+|+...+ .|-+|+.+.--+. +.++-++..|.+
T Consensus 8 mN~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~e~mP~~IPfs 82 (1175)
T COG5183 8 MNEDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYKEDMPQIIPFS 82 (1175)
T ss_pred CCccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecccCCCccccee
Confidence 4566789999999988888775532342 5789999999997544 6999999886553 345545555544
No 98
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.23 E-value=0.038 Score=45.78 Aligned_cols=53 Identities=25% Similarity=0.750 Sum_probs=37.3
Q ss_pred CCCCCCccccccccccCCcce-eecCCC-----CCccchhhHHHHhhCC--------CCCcccCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEML-RMMPEC-----RHYFHLCCVDAWLKLN--------GSCPVCRNSPL 173 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~v-r~l~~C-----~H~FH~~CI~~Wl~~~--------~tCPlCR~~l~ 173 (197)
+.+.+..|=||+.-=++...- -+-| | .|-.|..|+..|+..+ .+||.|+.+.+
T Consensus 16 ~~e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 16 NQELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred ccccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 456678999999874443311 2334 5 4889999999999543 26999998764
No 99
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=92.89 E-value=0.094 Score=45.85 Aligned_cols=54 Identities=24% Similarity=0.518 Sum_probs=33.6
Q ss_pred CCCCCccccccccccCCccee--------------ecCCC-----CCccchhhHHHHhhC-------------CCCCccc
Q 029203 121 NNINTTCSICLCEYKDLEMLR--------------MMPEC-----RHYFHLCCVDAWLKL-------------NGSCPVC 168 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr--------------~l~~C-----~H~FH~~CI~~Wl~~-------------~~tCPlC 168 (197)
.++.+.|--||.+-.+ -++. ..+.| .-.+|.+|+-+|+.. +.+||.|
T Consensus 268 ~~e~e~CigC~~~~~~-vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtC 346 (358)
T PF10272_consen 268 GQELEPCIGCMQAQPN-VKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTC 346 (358)
T ss_pred ccccCCccccccCCCC-cEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCC
Confidence 4567889999885321 1111 11123 445678999999832 3479999
Q ss_pred CCCCCCC
Q 029203 169 RNSPLPT 175 (197)
Q Consensus 169 R~~l~~~ 175 (197)
|+...-.
T Consensus 347 Ra~FCil 353 (358)
T PF10272_consen 347 RAKFCIL 353 (358)
T ss_pred cccceee
Confidence 9987543
No 100
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.04 E-value=0.075 Score=47.02 Aligned_cols=40 Identities=25% Similarity=0.624 Sum_probs=29.9
Q ss_pred CCCCccccccccccCC-cceeecCCCCCccchhhHHHHhhCC
Q 029203 122 NINTTCSICLCEYKDL-EMLRMMPECRHYFHLCCVDAWLKLN 162 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~-~~vr~l~~C~H~FH~~CI~~Wl~~~ 162 (197)
....+|.||+.++... ++..+.. |+|.|+.+|..+.+..+
T Consensus 144 ~~~~~C~iC~~e~~~~~~~f~~~~-C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 144 LPKEECGICFVEDPEAEDMFSVLK-CGHRFCKDCVKQHIEVK 184 (384)
T ss_pred cccccCccCccccccHhhhHHHhc-ccchhhhHHhHHHhhhh
Confidence 3478999999554444 5555554 99999999999988643
No 101
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=92.02 E-value=0.21 Score=38.14 Aligned_cols=30 Identities=20% Similarity=0.501 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhheeccccC
Q 029203 18 GYSIAIALGFLVLLSTVLLASYICCRRNNS 47 (197)
Q Consensus 18 ~~~I~i~i~~~vli~~i~l~~~~~~~~~~~ 47 (197)
...+.|+++++|++.++++.+|+|-+|++.
T Consensus 29 thm~tILiaIvVliiiiivli~lcssRKkK 58 (189)
T PF05568_consen 29 THMYTILIAIVVLIIIIIVLIYLCSSRKKK 58 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 345667777888888888888888877764
No 102
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=91.99 E-value=0.27 Score=28.76 Aligned_cols=28 Identities=18% Similarity=0.639 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhheeccccC
Q 029203 18 GYSIAIALGFLVLLSTVLLASYICCRRNNS 47 (197)
Q Consensus 18 ~~~I~i~i~~~vli~~i~l~~~~~~~~~~~ 47 (197)
+++.++++|+.++ ++.++.|.|.+++.+
T Consensus 7 aIIv~V~vg~~ii--ii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 7 AIIVAVVVGMAII--IICMFYYACCYKKHR 34 (38)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHHcccc
Confidence 3344444444332 233445556666553
No 103
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=91.99 E-value=0.094 Score=44.84 Aligned_cols=45 Identities=22% Similarity=0.525 Sum_probs=35.1
Q ss_pred CCCCCccccccccccCCcceeecCCC--CCccchhhHHHHhhCCCCCcccCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPEC--RHYFHLCCVDAWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C--~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 173 (197)
..+-.+|+||.+.+... ... | ||+-|..|-. +....||.||.++-
T Consensus 45 ~~~lleCPvC~~~l~~P----i~Q-C~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPP----IFQ-CDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred chhhccCchhhccCccc----cee-cCCCcEehhhhhh---hhcccCCccccccc
Confidence 44568999999998887 333 6 7999999965 34668999998774
No 104
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=91.93 E-value=0.12 Score=43.79 Aligned_cols=51 Identities=27% Similarity=0.749 Sum_probs=37.4
Q ss_pred CCccccccccccCCcc-eeecCCCC-----CccchhhHHHHhhC--CCCCcccCCCCCCC
Q 029203 124 NTTCSICLCEYKDLEM-LRMMPECR-----HYFHLCCVDAWLKL--NGSCPVCRNSPLPT 175 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~-vr~l~~C~-----H~FH~~CI~~Wl~~--~~tCPlCR~~l~~~ 175 (197)
+..|=||.++...... .-..| |. +..|..|++.|+.. ..+|.+|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 5789999998765432 23444 53 77899999999974 45799998866544
No 105
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.89 E-value=0.094 Score=49.58 Aligned_cols=23 Identities=30% Similarity=0.872 Sum_probs=21.2
Q ss_pred CCCCccchhhHHHHhhCCCCCcc
Q 029203 145 ECRHYFHLCCVDAWLKLNGSCPV 167 (197)
Q Consensus 145 ~C~H~FH~~CI~~Wl~~~~tCPl 167 (197)
.|+|+-|.+|...|+...-.||-
T Consensus 1047 ~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1047 TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred cccccccHHHHHHHHhcCCcCCC
Confidence 49999999999999999999984
No 106
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.87 E-value=0.052 Score=50.36 Aligned_cols=45 Identities=27% Similarity=0.512 Sum_probs=33.9
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNS 171 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~ 171 (197)
-..|.||+..|....-.-+...|||..|..|+.. ..+.+|| |+.+
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~--lyn~scp-~~~D 55 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQL--LYNASCP-TKRD 55 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHh--HhhccCC-CCcc
Confidence 4589999999876653333335999999999987 5577899 7654
No 107
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=91.17 E-value=0.19 Score=39.53 Aligned_cols=15 Identities=13% Similarity=0.337 Sum_probs=6.8
Q ss_pred chhHHHHHHHHHHHH
Q 029203 16 GLGYSIAIALGFLVL 30 (197)
Q Consensus 16 ~~~~~I~i~i~~~vl 30 (197)
.++++++|+++++++
T Consensus 77 ~~~iivgvi~~Vi~I 91 (179)
T PF13908_consen 77 ITGIIVGVICGVIAI 91 (179)
T ss_pred eeeeeeehhhHHHHH
Confidence 444444444444443
No 108
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=90.99 E-value=0.031 Score=33.19 Aligned_cols=27 Identities=11% Similarity=0.210 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhheeccc
Q 029203 19 YSIAIALGFLVLLSTVLLASYICCRRN 45 (197)
Q Consensus 19 ~~I~i~i~~~vli~~i~l~~~~~~~~~ 45 (197)
+.+++++.+.++++++++++|+++||+
T Consensus 13 Ia~~VvVPV~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 13 IAVGVVVPVGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred EEEEEEechHHHHHHHHHHhheEEecc
Confidence 344455555565565556666555543
No 109
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=90.80 E-value=0.23 Score=38.40 Aligned_cols=36 Identities=28% Similarity=0.628 Sum_probs=21.2
Q ss_pred CCccccccccccCCcceeecC---C-----CC-CccchhhHHHHh
Q 029203 124 NTTCSICLCEYKDLEMLRMMP---E-----CR-HYFHLCCVDAWL 159 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~---~-----C~-H~FH~~CI~~Wl 159 (197)
+..|+|||+-=-+..-+.-.. + |+ -.=|..|++++-
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfk 46 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFK 46 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHH
Confidence 568999999754442211000 1 32 234789999985
No 110
>PHA02650 hypothetical protein; Provisional
Probab=90.73 E-value=0.67 Score=31.51 Aligned_cols=34 Identities=12% Similarity=-0.057 Sum_probs=21.3
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhheecccc
Q 029203 13 TNIGLGYSIAIALGFLVLLSTVLLASYICCRRNN 46 (197)
Q Consensus 13 ~~~~~~~~I~i~i~~~vli~~i~l~~~~~~~~~~ 46 (197)
+..++.|.++|.+.+++++.++++++|+...++.
T Consensus 43 ~~~~~~~~~~ii~i~~v~i~~l~~flYLK~~~r~ 76 (81)
T PHA02650 43 SVSWFNGQNFIFLIFSLIIVALFSFFVFKGYTRN 76 (81)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3556777666666666666666677776554443
No 111
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=90.42 E-value=0.24 Score=42.85 Aligned_cols=55 Identities=22% Similarity=0.478 Sum_probs=37.8
Q ss_pred CCCCCccccccccccCCcc-eeecCCCCCccchhhHHHHh-hCCCCCcccCCCCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEM-LRMMPECRHYFHLCCVDAWL-KLNGSCPVCRNSPLPTP 176 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~-vr~l~~C~H~FH~~CI~~Wl-~~~~tCPlCR~~l~~~~ 176 (197)
.+++..|+.|++++.-.|+ ..-.| ||...|.-|-..-- ..+..||-||.......
T Consensus 11 edeed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 11 EDEEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 3445669999999987774 34455 89877777744322 23568999998765543
No 112
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.32 E-value=0.22 Score=43.77 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=39.8
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCC---CCccc
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNG---SCPVC 168 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~---tCPlC 168 (197)
....+.|+|=-++-.+...=..|. |||+..++-|++-.++.. .||+|
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred ccceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCC
Confidence 456789999998888777777888 999999999999776654 69999
No 113
>PHA02844 putative transmembrane protein; Provisional
Probab=90.23 E-value=0.71 Score=31.03 Aligned_cols=35 Identities=20% Similarity=0.068 Sum_probs=20.7
Q ss_pred CCcccccchhHHHHHHHHHHHHHHHHHHHHhheec
Q 029203 9 PNYLTNIGLGYSIAIALGFLVLLSTVLLASYICCR 43 (197)
Q Consensus 9 ~~~~~~~~~~~~I~i~i~~~vli~~i~l~~~~~~~ 43 (197)
+...+..++.|.++|++.+++++.++++++|+..-
T Consensus 38 ~~~~~~~~~~~~~~ii~i~~v~~~~~~~flYLK~~ 72 (75)
T PHA02844 38 VNKNNVCSSSTKIWILTIIFVVFATFLTFLYLKAV 72 (75)
T ss_pred ccccccCChhHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 34444666777666666555555666666666543
No 114
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=90.09 E-value=0.4 Score=34.34 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=8.8
Q ss_pred HHHHHHHHHHH-hheecccc
Q 029203 28 LVLLSTVLLAS-YICCRRNN 46 (197)
Q Consensus 28 ~vli~~i~l~~-~~~~~~~~ 46 (197)
++.++++++++ ||.+.|.+
T Consensus 71 ~v~IlVily~IyYFVILRer 90 (101)
T PF06024_consen 71 FVCILVILYAIYYFVILRER 90 (101)
T ss_pred HHHHHHHHhhheEEEEEecc
Confidence 33334444444 55555555
No 115
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.79 E-value=0.17 Score=42.83 Aligned_cols=30 Identities=23% Similarity=0.582 Sum_probs=23.4
Q ss_pred CCCccchhhHHHHhh-------------CCCCCcccCCCCCCC
Q 029203 146 CRHYFHLCCVDAWLK-------------LNGSCPVCRNSPLPT 175 (197)
Q Consensus 146 C~H~FH~~CI~~Wl~-------------~~~tCPlCR~~l~~~ 175 (197)
|.-.+|.+|+.+|+. .+.+||+||++..-.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 567788999999983 345899999987644
No 116
>PHA02819 hypothetical protein; Provisional
Probab=88.84 E-value=1 Score=29.94 Aligned_cols=35 Identities=11% Similarity=0.013 Sum_probs=21.7
Q ss_pred CCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhe
Q 029203 7 PSPNYLTNIGLGYSIAIALGFLVLLSTVLLASYIC 41 (197)
Q Consensus 7 ~s~~~~~~~~~~~~I~i~i~~~vli~~i~l~~~~~ 41 (197)
+|+...+..++.|.++|.+.+++++.++++++|+.
T Consensus 34 ~s~~~~~~~~~~~~~~ii~l~~~~~~~~~~flYLK 68 (71)
T PHA02819 34 ENYNKKTKKSFLRYYLIIGLVTIVFVIIFIIFYLK 68 (71)
T ss_pred CCCcccccCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556677777777666666666666666653
No 117
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=87.86 E-value=0.25 Score=30.40 Aligned_cols=28 Identities=32% Similarity=0.845 Sum_probs=21.3
Q ss_pred C-CCccchhhHHHHhhCCCCCcccCCCCC
Q 029203 146 C-RHYFHLCCVDAWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 146 C-~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 173 (197)
| .|..+-.|+..-|.....||+|..+|.
T Consensus 18 C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp -SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred ecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 7 499999999999999999999988763
No 118
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=87.61 E-value=1.3 Score=31.61 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=18.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHH
Q 029203 13 TNIGLGYSIAIALGFLVLLSTVLLAS 38 (197)
Q Consensus 13 ~~~~~~~~I~i~i~~~vli~~i~l~~ 38 (197)
.+..|.|.++++++.+++-++|.+++
T Consensus 13 ~g~sW~~LVGVv~~al~~SlLIalaa 38 (102)
T PF15176_consen 13 GGRSWPFLVGVVVTALVTSLLIALAA 38 (102)
T ss_pred CCcccHhHHHHHHHHHHHHHHHHHHH
Confidence 37889999999888877555444443
No 119
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=87.46 E-value=0.17 Score=45.52 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhheeccccC
Q 029203 17 LGYSIAIALGFLVLLSTVLLASYICCRRNNS 47 (197)
Q Consensus 17 ~~~~I~i~i~~~vli~~i~l~~~~~~~~~~~ 47 (197)
+..++++++|++++++++++++++|.+++++
T Consensus 351 ~~~~l~vVlgvavlivVv~viv~vc~~~rrr 381 (439)
T PF02480_consen 351 GAALLGVVLGVAVLIVVVGVIVWVCLRCRRR 381 (439)
T ss_dssp -------------------------------
T ss_pred ccchHHHHHHHHHHHHHHHHHhheeeeehhc
Confidence 4445555555555555555555555555444
No 120
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=87.40 E-value=0.12 Score=39.75 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=16.4
Q ss_pred cccccchhHHHHHHHHH--HHHHHHHHHHHhheecccc
Q 029203 11 YLTNIGLGYSIAIALGF--LVLLSTVLLASYICCRRNN 46 (197)
Q Consensus 11 ~~~~~~~~~~I~i~i~~--~vli~~i~l~~~~~~~~~~ 46 (197)
+++...-.++|++++|+ .+++.+++++++||+|+++
T Consensus 42 GlS~knknIVIGvVVGVGg~ill~il~lvf~~c~r~kk 79 (154)
T PF04478_consen 42 GLSSKNKNIVIGVVVGVGGPILLGILALVFIFCIRRKK 79 (154)
T ss_pred CCCcCCccEEEEEEecccHHHHHHHHHhheeEEEeccc
Confidence 34444444455555554 3333333444445554444
No 121
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=86.62 E-value=1.9 Score=35.38 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=6.7
Q ss_pred CCCCCCCCccccc
Q 029203 3 TPATPSPNYLTNI 15 (197)
Q Consensus 3 ~~~~~s~~~~~~~ 15 (197)
+++..+++|.+.+
T Consensus 178 St~stspS~S~vi 190 (259)
T PF07010_consen 178 STSSTSPSYSSVI 190 (259)
T ss_pred ccccCCccccchh
Confidence 3444456666533
No 122
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=86.56 E-value=0.59 Score=29.30 Aligned_cols=42 Identities=26% Similarity=0.645 Sum_probs=22.9
Q ss_pred cccccccccCC------cceeecCCCCCccchhhHHHHhh-CCCCCcccC
Q 029203 127 CSICLCEYKDL------EMLRMMPECRHYFHLCCVDAWLK-LNGSCPVCR 169 (197)
Q Consensus 127 CaICL~~~~~~------~~vr~l~~C~H~FH~~CI~~Wl~-~~~tCPlCR 169 (197)
|.-|+..|..+ .....-|.|++.|+.+| |-++. .-.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 56677777765 24567778999999988 44442 334799884
No 123
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=86.55 E-value=0.7 Score=39.10 Aligned_cols=55 Identities=25% Similarity=0.573 Sum_probs=39.2
Q ss_pred cccccccc-ccCCcceeecCCCCCccchhhHHHHhhCC-CCCcccCCCCCCCCCCCC
Q 029203 126 TCSICLCE-YKDLEMLRMMPECRHYFHLCCVDAWLKLN-GSCPVCRNSPLPTPLSTP 180 (197)
Q Consensus 126 ~CaICL~~-~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~-~tCPlCR~~l~~~~~~~~ 180 (197)
.|++|-.+ |-+.+.+.....|+|-.|..|.+.-+... ..||-|-..+....+.+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr~q 58 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFRVQ 58 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccchh
Confidence 58888654 34445333333499999999999988655 489999888777766544
No 124
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=85.94 E-value=0.5 Score=35.21 Aligned_cols=16 Identities=25% Similarity=0.096 Sum_probs=8.1
Q ss_pred HHHHHHHHhheecccc
Q 029203 31 LSTVLLASYICCRRNN 46 (197)
Q Consensus 31 i~~i~l~~~~~~~~~~ 46 (197)
|+++++++.-.+|+++
T Consensus 14 l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 14 LFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3344444445556665
No 125
>PHA03054 IMV membrane protein; Provisional
Probab=85.10 E-value=2.3 Score=28.33 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=16.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhh
Q 029203 14 NIGLGYSIAIALGFLVLLSTVLLASYI 40 (197)
Q Consensus 14 ~~~~~~~I~i~i~~~vli~~i~l~~~~ 40 (197)
..++.|.++|.+.+++++.++++++|+
T Consensus 43 ~~~~~~~~~ii~l~~v~~~~l~~flYL 69 (72)
T PHA03054 43 TGCWGWYWLIIIFFIVLILLLLIYLYL 69 (72)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666555555556666664
No 126
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=84.42 E-value=0.28 Score=46.10 Aligned_cols=52 Identities=23% Similarity=0.598 Sum_probs=39.9
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhC---CCCCcccCCCCCCCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL---NGSCPVCRNSPLPTPLST 179 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~---~~tCPlCR~~l~~~~~~~ 179 (197)
..+|.||+..+.+. ..+ .|.|.|+..|+..-+.. ...||+|+..+.......
T Consensus 21 ~lEc~ic~~~~~~p---~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~E 75 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRE 75 (684)
T ss_pred hccCCceeEEeecc---chh-hhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccc
Confidence 57999999999887 344 49999999998875543 347999998776555443
No 127
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.30 E-value=0.71 Score=42.65 Aligned_cols=49 Identities=31% Similarity=0.782 Sum_probs=39.9
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTPL 177 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~~ 177 (197)
......|.||+.+. ..+..+ |. |..|+.+|+..+.+||+|+..+.....
T Consensus 476 ~~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 476 REPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDDF 524 (543)
T ss_pred hcccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhcccc
Confidence 34567999999997 446666 88 999999999999999999888765543
No 128
>PTZ00370 STEVOR; Provisional
Probab=84.20 E-value=0.79 Score=38.79 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHhheecccc
Q 029203 21 IAIALGFLVLLSTVLLASYICCRRNN 46 (197)
Q Consensus 21 I~i~i~~~vli~~i~l~~~~~~~~~~ 46 (197)
-+|++.++++++++++++|+|.+|||
T Consensus 257 ygiaalvllil~vvliilYiwlyrrR 282 (296)
T PTZ00370 257 YGIAALVLLILAVVLIILYIWLYRRR 282 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35666667777777788888877766
No 129
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=84.00 E-value=0.81 Score=36.83 Aligned_cols=41 Identities=29% Similarity=0.778 Sum_probs=30.1
Q ss_pred CCCcccccccc-----ccCCcceeecCCCCCccchhhHHHHhhCCCCCcccC
Q 029203 123 INTTCSICLCE-----YKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCR 169 (197)
Q Consensus 123 ~~~~CaICL~~-----~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR 169 (197)
.++.|.+|-++ |+. +.+...+.|+-+||..|.. ...||-|-
T Consensus 151 kGfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~-----~~~CpkC~ 196 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFR-----KKSCPKCA 196 (202)
T ss_pred CCCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcC-----CCCCCCcH
Confidence 46899999752 333 3455666799999999976 26799994
No 130
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=83.20 E-value=0.91 Score=43.13 Aligned_cols=41 Identities=17% Similarity=0.361 Sum_probs=30.2
Q ss_pred CccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcc
Q 029203 125 TTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPV 167 (197)
Q Consensus 125 ~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPl 167 (197)
..|.+|-..+. |..+ ..+.|+|.=|.+|+.+|+..+..||.
T Consensus 780 ~~CtVC~~vi~-G~~~-~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIR-GVDV-WCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceee-eeEe-ecccccccccHHHHHHHHhcCCCCcc
Confidence 47888854432 2222 33459999999999999999888876
No 131
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=82.93 E-value=0.46 Score=44.07 Aligned_cols=43 Identities=23% Similarity=0.596 Sum_probs=27.0
Q ss_pred CCCCccccccc-----cccCCcceeecCCCCCccchhhHHHHhhCCCCCccc
Q 029203 122 NINTTCSICLC-----EYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVC 168 (197)
Q Consensus 122 ~~~~~CaICL~-----~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlC 168 (197)
...+.|.+|-. .|+.....+-. .|+++||+.|... ...-||-|
T Consensus 509 ~~gfiCe~Cq~~~iiyPF~~~~~~rC~-~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 509 GKGFICELCQHNDIIYPFETRNTRRCS-TCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred cCeeeeeeccCCCcccccccccceeHH-HHHHHHHHHHHhc---cCCCCCch
Confidence 45788899922 23322233334 4999999999654 22239999
No 132
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.90 E-value=2.1 Score=31.26 Aligned_cols=69 Identities=16% Similarity=0.275 Sum_probs=43.5
Q ss_pred HHHHhcCCCeeeccccccCCCCCCCCCCccccccccccCC----------cceeecCCCCCccchhhHHHHhhCCCCCcc
Q 029203 98 QAVINSYPKFQFTKESVSGNNNSNNINTTCSICLCEYKDL----------EMLRMMPECRHYFHLCCVDAWLKLNGSCPV 167 (197)
Q Consensus 98 ~~~~~~lp~~~~~~~~~~~~~~~~~~~~~CaICL~~~~~~----------~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPl 167 (197)
+..-..+|...|.+...+ .......|.-|+..|.+. .....-+.|++.|+.+|=.-+-+.-.+||-
T Consensus 33 RSyHHLfPl~~f~ev~~~----~~~~~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPG 108 (112)
T TIGR00622 33 RSYHHLFPLKAFQEIPLE----EYNGSRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPG 108 (112)
T ss_pred HhhhccCCCccccccccc----ccCCCCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcC
Confidence 333344565555443211 112235699999998753 123445679999999996666666678999
Q ss_pred cCC
Q 029203 168 CRN 170 (197)
Q Consensus 168 CR~ 170 (197)
|..
T Consensus 109 C~~ 111 (112)
T TIGR00622 109 CIH 111 (112)
T ss_pred CCC
Confidence 953
No 133
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=82.84 E-value=1.3 Score=33.23 Aligned_cols=53 Identities=25% Similarity=0.476 Sum_probs=36.1
Q ss_pred CCCccccccccccCCcceeecCCCCCccchhhHHH-Hh--hCCCCCcccCCCCCCC
Q 029203 123 INTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDA-WL--KLNGSCPVCRNSPLPT 175 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~-Wl--~~~~tCPlCR~~l~~~ 175 (197)
.--+|.||-|.-.+..=+.--..||-..+.-|-.. |= ..+.+||.|+.+.-.+
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 45799999987665532222225888888876544 54 4577999999987543
No 134
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=82.78 E-value=0.68 Score=38.77 Aligned_cols=51 Identities=29% Similarity=0.644 Sum_probs=37.4
Q ss_pred CCCCccccccccccCCcceeec---CCCCCccchhhHHHHhhC---------CCCCcccCCCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMM---PECRHYFHLCCVDAWLKL---------NGSCPVCRNSP 172 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l---~~C~H~FH~~CI~~Wl~~---------~~tCPlCR~~l 172 (197)
....+|.+|.+++.+.+..+.. +.|+-++|..|+..-+.. ...||.|+..+
T Consensus 180 ~~~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 180 ALNVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred ccchhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 3346999999999666655432 268889999999985522 34799998854
No 135
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=81.94 E-value=0.63 Score=38.44 Aligned_cols=50 Identities=24% Similarity=0.576 Sum_probs=37.4
Q ss_pred CCCccccccccc-cCCc-ceeecCCCCCccchhhHHHHhhCCC-CCc--ccCCCC
Q 029203 123 INTTCSICLCEY-KDLE-MLRMMPECRHYFHLCCVDAWLKLNG-SCP--VCRNSP 172 (197)
Q Consensus 123 ~~~~CaICL~~~-~~~~-~vr~l~~C~H~FH~~CI~~Wl~~~~-tCP--lCR~~l 172 (197)
.+..|+||-.+- -+++ ++-+-|.|-|..|..|.++-+.... .|| -|-.-|
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 456899998763 3444 5555667999999999999997655 799 785533
No 136
>PHA02975 hypothetical protein; Provisional
Probab=81.51 E-value=3.9 Score=27.08 Aligned_cols=26 Identities=15% Similarity=0.053 Sum_probs=13.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhh
Q 029203 15 IGLGYSIAIALGFLVLLSTVLLASYI 40 (197)
Q Consensus 15 ~~~~~~I~i~i~~~vli~~i~l~~~~ 40 (197)
.++.|.+.|.+.+++++.++++++|.
T Consensus 40 ~~~~~~~~ii~i~~v~~~~~~~flYL 65 (69)
T PHA02975 40 KSSLSIILIIFIIFITCIAVFTFLYL 65 (69)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555445545555555554
No 137
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=81.38 E-value=2 Score=34.68 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhheeccccC
Q 029203 19 YSIAIALGFLVLLSTVLLASYICCRRNNS 47 (197)
Q Consensus 19 ~~I~i~i~~~vli~~i~l~~~~~~~~~~~ 47 (197)
++.++++|.++++++++++.|+|+.|+..
T Consensus 102 lI~lv~~g~~lLla~~~~~~Y~~~~Rrs~ 130 (202)
T PF06365_consen 102 LIALVTSGSFLLLAILLGAGYCCHQRRSW 130 (202)
T ss_pred EEehHHhhHHHHHHHHHHHHHHhhhhccC
Confidence 33344445455566677777887766553
No 138
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=81.25 E-value=0.84 Score=36.98 Aligned_cols=43 Identities=23% Similarity=0.624 Sum_probs=35.8
Q ss_pred CCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCccc
Q 029203 123 INTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVC 168 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlC 168 (197)
+-..|.+|..-...+. ...+|+=.+|..|+...+.+...||.|
T Consensus 180 nlk~Cn~Ch~LvIqg~---rCg~c~i~~h~~c~qty~q~~~~cphc 222 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQGI---RCGSCNIQYHRGCIQTYLQRRDICPHC 222 (235)
T ss_pred HHHHHhHhHHHhheee---ccCcccchhhhHHHHHHhcccCcCCch
Confidence 4579999998877662 233488999999999999999999999
No 139
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=81.07 E-value=1.8 Score=32.26 Aligned_cols=29 Identities=17% Similarity=0.454 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhheecccc
Q 029203 18 GYSIAIALGFLVLLSTVLLASYICCRRNN 46 (197)
Q Consensus 18 ~~~I~i~i~~~vli~~i~l~~~~~~~~~~ 46 (197)
.+.|.+++||+.++++-+++.|+.-++..
T Consensus 44 ~lYIL~vmgfFgff~~gImlsyvRSKK~E 72 (129)
T PF02060_consen 44 YLYILVVMGFFGFFTVGIMLSYVRSKKRE 72 (129)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45677778888877777777776555444
No 140
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=80.93 E-value=1.3 Score=42.49 Aligned_cols=50 Identities=10% Similarity=0.055 Sum_probs=35.8
Q ss_pred CCCccccccccccCCc---ceeecCCCCCccchhhHHHHhhC------CCCCcccCCCC
Q 029203 123 INTTCSICLCEYKDLE---MLRMMPECRHYFHLCCVDAWLKL------NGSCPVCRNSP 172 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~---~vr~l~~C~H~FH~~CI~~Wl~~------~~tCPlCR~~l 172 (197)
....|.||.-++.+.+ .+-.+.+|+|-||..||..|+.+ +-.|++|..-|
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 4567778877777633 33333369999999999999943 34689997755
No 141
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.90 E-value=0.95 Score=36.67 Aligned_cols=38 Identities=29% Similarity=0.750 Sum_probs=27.2
Q ss_pred cccccccccCCcceeecCCCCCc-cchhhHHHHhhCCCCCcccCCCC
Q 029203 127 CSICLCEYKDLEMLRMMPECRHY-FHLCCVDAWLKLNGSCPVCRNSP 172 (197)
Q Consensus 127 CaICL~~~~~~~~vr~l~~C~H~-FH~~CI~~Wl~~~~tCPlCR~~l 172 (197)
|-.|-+ .+..|..+| |.|+ +|..|-.. -.+||+|+...
T Consensus 161 Cr~C~~---~~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGE---REATVLLLP-CRHLCLCGICDES----LRICPICRSPK 199 (207)
T ss_pred ceecCc---CCceEEeec-ccceEeccccccc----CccCCCCcChh
Confidence 777755 466789999 9865 66678544 44799998754
No 142
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=80.51 E-value=2.5 Score=28.54 Aligned_cols=23 Identities=39% Similarity=0.712 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHhheecccc
Q 029203 23 IALGFLVLLSTVLLASYICCRRNN 46 (197)
Q Consensus 23 i~i~~~vli~~i~l~~~~~~~~~~ 46 (197)
+++|+++++.++ ++++++.+++.
T Consensus 6 ~~~g~~~ll~~v-~~~~~~~rr~~ 28 (75)
T PF14575_consen 6 IIVGVLLLLVLV-IIVIVCFRRCK 28 (75)
T ss_dssp HHHHHHHHHHHH-HHHHCCCTT--
T ss_pred HHHHHHHHHHhh-eeEEEEEeeEc
Confidence 344444433333 33444444433
No 143
>PF13209 DUF4017: Protein of unknown function (DUF4017)
Probab=80.05 E-value=1.4 Score=27.85 Aligned_cols=35 Identities=17% Similarity=0.358 Sum_probs=26.3
Q ss_pred CCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhe
Q 029203 7 PSPNYLTNIGLGYSIAIALGFLVLLSTVLLASYIC 41 (197)
Q Consensus 7 ~s~~~~~~~~~~~~I~i~i~~~vli~~i~l~~~~~ 41 (197)
|+.++.++.||..+++-+-++-+++.+.++.+|+-
T Consensus 22 PaSegYN~vgWKlfvGQ~YAiPif~i~aiitFyin 56 (60)
T PF13209_consen 22 PASEGYNTVGWKLFVGQAYAIPIFIITAIITFYIN 56 (60)
T ss_pred ecccCccccchhheecchhHhHHHHHHHHHhheec
Confidence 55667788999999998888877766666666643
No 144
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=79.60 E-value=1.6 Score=30.37 Aligned_cols=6 Identities=33% Similarity=1.636 Sum_probs=2.7
Q ss_pred eecccc
Q 029203 41 CCRRNN 46 (197)
Q Consensus 41 ~~~~~~ 46 (197)
|++.|+
T Consensus 54 CC~kRk 59 (94)
T PF05393_consen 54 CCKKRK 59 (94)
T ss_pred HHHHhh
Confidence 444444
No 145
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=79.16 E-value=7.9 Score=26.45 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=24.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhheeccccC
Q 029203 13 TNIGLGYSIAIALGFLVLLSTVLLASYICCRRNNS 47 (197)
Q Consensus 13 ~~~~~~~~I~i~i~~~vli~~i~l~~~~~~~~~~~ 47 (197)
.....+...+|+++=+++-.+|++++|+|.+.+++
T Consensus 29 ~~ls~g~LaGiV~~D~vlTLLIv~~vy~car~r~r 63 (79)
T PF07213_consen 29 YPLSPGLLAGIVAADAVLTLLIVLVVYYCARPRRR 63 (79)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence 34456667777777777667777888888776554
No 146
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.96 E-value=0.72 Score=43.97 Aligned_cols=45 Identities=20% Similarity=0.443 Sum_probs=33.2
Q ss_pred CCCCccccccccccCC----cceeecCCCCCccchhhHHHHhhCCCCCccc
Q 029203 122 NINTTCSICLCEYKDL----EMLRMMPECRHYFHLCCVDAWLKLNGSCPVC 168 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~----~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlC 168 (197)
.....|.-|++..... +.+.++. |+|.||..|+..-..+++ |-.|
T Consensus 782 ~~e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 782 SVEERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred eehhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChh
Confidence 3445899999887633 4677887 999999999988765554 5444
No 147
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=77.76 E-value=4.1 Score=25.95 Aligned_cols=50 Identities=22% Similarity=0.450 Sum_probs=35.6
Q ss_pred CccccccccccCCc-ceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCCCC
Q 029203 125 TTCSICLCEYKDLE-MLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTPL 177 (197)
Q Consensus 125 ~~CaICL~~~~~~~-~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~~ 177 (197)
..|--|-.++..+. ..++-. =..-|+.+|.+.-| +..||-|-..+.+.+.
T Consensus 6 pnCE~C~~dLp~~s~~A~ICS-fECTFC~~C~e~~l--~~~CPNCgGelv~RP~ 56 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICS-FECTFCADCAETML--NGVCPNCGGELVRRPR 56 (57)
T ss_pred CCccccCCCCCCCCCcceEEe-EeCcccHHHHHHHh--cCcCcCCCCccccCCC
Confidence 45777777776665 333322 34689999999966 7899999988877653
No 148
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=76.24 E-value=0.84 Score=38.89 Aligned_cols=7 Identities=43% Similarity=0.548 Sum_probs=0.0
Q ss_pred eeecccc
Q 029203 73 IFVAEDD 79 (197)
Q Consensus 73 ~~~~~~~ 79 (197)
||..|-+
T Consensus 194 IF~dEle 200 (290)
T PF05454_consen 194 IFQDELE 200 (290)
T ss_dssp -------
T ss_pred ecccccc
Confidence 4444333
No 150
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=75.57 E-value=0.6 Score=33.16 Aligned_cols=12 Identities=8% Similarity=0.304 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 029203 20 SIAIALGFLVLL 31 (197)
Q Consensus 20 ~I~i~i~~~vli 31 (197)
+.+|++++++++
T Consensus 68 iagi~vg~~~~v 79 (96)
T PTZ00382 68 IAGISVAVVAVV 79 (96)
T ss_pred EEEEEeehhhHH
Confidence 444444444333
No 151
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.47 E-value=2 Score=38.76 Aligned_cols=37 Identities=24% Similarity=0.525 Sum_probs=30.3
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHhhC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL 161 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~ 161 (197)
.....|-||.+.+.. .+..+. |+|.|+..|....+..
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 346799999999877 455565 9999999999999954
No 152
>PHA02692 hypothetical protein; Provisional
Probab=75.03 E-value=6.9 Score=26.04 Aligned_cols=29 Identities=14% Similarity=0.358 Sum_probs=14.1
Q ss_pred ccccchhHHHHHHHHH-HHHHHHHHHHHhh
Q 029203 12 LTNIGLGYSIAIALGF-LVLLSTVLLASYI 40 (197)
Q Consensus 12 ~~~~~~~~~I~i~i~~-~vli~~i~l~~~~ 40 (197)
....+++|.+++.+++ ++++.++++++|.
T Consensus 38 ~~~~~~~~~~~ii~~~~~~~~~vll~flYL 67 (70)
T PHA02692 38 DRSKGVPWTTVFLIGLIAAAIGVLLCFHYL 67 (70)
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666633 3333334444443
No 153
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=74.77 E-value=2.5 Score=36.19 Aligned_cols=9 Identities=11% Similarity=0.497 Sum_probs=3.6
Q ss_pred HHHHHHHhh
Q 029203 32 STVLLASYI 40 (197)
Q Consensus 32 ~~i~l~~~~ 40 (197)
+++++++|+
T Consensus 269 VLIMvIIYL 277 (299)
T PF02009_consen 269 VLIMVIIYL 277 (299)
T ss_pred HHHHHHHHH
Confidence 334444443
No 154
>PF14979 TMEM52: Transmembrane 52
Probab=74.70 E-value=6.9 Score=29.92 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=7.7
Q ss_pred HHHHhheeccccC
Q 029203 35 LLASYICCRRNNS 47 (197)
Q Consensus 35 ~l~~~~~~~~~~~ 47 (197)
...+-||++++++
T Consensus 39 a~C~rfCClrk~~ 51 (154)
T PF14979_consen 39 ASCVRFCCLRKQA 51 (154)
T ss_pred HHHHHHHHhcccc
Confidence 3444567777665
No 155
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=73.44 E-value=1.5 Score=28.62 Aligned_cols=38 Identities=13% Similarity=0.321 Sum_probs=20.2
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHh
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWL 159 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl 159 (197)
.+...|.+|...|.--..-..-..||++|+..|.....
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 34679999999996554444444699999999986544
No 156
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=73.32 E-value=4.9 Score=29.84 Aligned_cols=35 Identities=9% Similarity=0.131 Sum_probs=21.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhheeccccCC
Q 029203 14 NIGLGYSIAIALGFLVLLSTVLLASYICCRRNNSS 48 (197)
Q Consensus 14 ~~~~~~~I~i~i~~~vli~~i~l~~~~~~~~~~~~ 48 (197)
....++++++++|++++++++.+++.-.+++....
T Consensus 64 ~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~~~ 98 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIGIILLISYCIRRLRKKSSSD 98 (122)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHS------
T ss_pred cceeehhHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 34578888999999888877776666555554443
No 157
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=73.09 E-value=1.1 Score=29.34 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHH
Q 029203 18 GYSIAIALGFLVLLS 32 (197)
Q Consensus 18 ~~~I~i~i~~~vli~ 32 (197)
+.+.++++|+++.++
T Consensus 13 avIaG~Vvgll~ail 27 (64)
T PF01034_consen 13 AVIAGGVVGLLFAIL 27 (64)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444443333
No 158
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=73.02 E-value=6.4 Score=37.91 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHhheeccccC
Q 029203 18 GYSIAIALGFLVLLST-VLLASYICCRRNNS 47 (197)
Q Consensus 18 ~~~I~i~i~~~vli~~-i~l~~~~~~~~~~~ 47 (197)
.|.++|+.++++++++ +++++|||++++..
T Consensus 273 ~fLl~ILG~~~livl~lL~vLl~yCrrkc~~ 303 (807)
T PF10577_consen 273 VFLLAILGGTALIVLILLCVLLCYCRRKCLK 303 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 3445555545444433 44455667665554
No 159
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=72.63 E-value=4.1 Score=26.98 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhheeccccC
Q 029203 20 SIAIALGFLVLLSTVLLASYICCRRNNS 47 (197)
Q Consensus 20 ~I~i~i~~~vli~~i~l~~~~~~~~~~~ 47 (197)
.|+++.++++.+...+.-+||.+++.+|
T Consensus 35 aIGvi~gi~~~~lt~ltN~YFK~k~drr 62 (68)
T PF04971_consen 35 AIGVIGGIFFGLLTYLTNLYFKIKEDRR 62 (68)
T ss_pred hHHHHHHHHHHHHHHHhHhhhhhhHhhh
Confidence 4566666666666666667777666554
No 160
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.62 E-value=2.9 Score=34.79 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=29.6
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhh
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLK 160 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~ 160 (197)
...-..|+.||..+.++ ...| =||+|.++||.+++.
T Consensus 40 iK~FdcCsLtLqPc~dP---vit~-~GylfdrEaILe~il 75 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDP---VITP-DGYLFDREAILEYIL 75 (303)
T ss_pred cCCcceeeeecccccCC---ccCC-CCeeeeHHHHHHHHH
Confidence 34567999999999887 4555 799999999999873
No 161
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.51 E-value=2.2 Score=37.78 Aligned_cols=44 Identities=27% Similarity=0.523 Sum_probs=33.9
Q ss_pred CCccccccccccCCc--ceeecCCCCCccchhhHHHHhhCCCCCccc
Q 029203 124 NTTCSICLCEYKDLE--MLRMMPECRHYFHLCCVDAWLKLNGSCPVC 168 (197)
Q Consensus 124 ~~~CaICL~~~~~~~--~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlC 168 (197)
-..|+.|.-.++... ...... |||.|+..|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 568999987766444 444555 89999999999999888877555
No 162
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=70.44 E-value=2.7 Score=25.58 Aligned_cols=43 Identities=30% Similarity=0.656 Sum_probs=29.3
Q ss_pred ccccccccccCCcceeecCCCCCccchhhHHHHhh------CCCCCcccC
Q 029203 126 TCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLK------LNGSCPVCR 169 (197)
Q Consensus 126 ~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~------~~~tCPlCR 169 (197)
.|.||-..-..++.|.= ..|+..||..|+..=.. ..-.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C-~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQC-DSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEB-STTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEc-CCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 38899885444444444 45999999999876432 244788885
No 163
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=70.25 E-value=2.2 Score=38.33 Aligned_cols=35 Identities=23% Similarity=0.616 Sum_probs=29.6
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHhh
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLK 160 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~ 160 (197)
+++..|+||-.-|+++ ..|| |+|-.|..|...-+.
T Consensus 2 eeelkc~vc~~f~~ep---iil~-c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREP---IILP-CSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCc---eEee-cccHHHHHHHHhhcc
Confidence 3467899999999887 6788 999999999887664
No 164
>PF14851 FAM176: FAM176 family
Probab=69.49 E-value=13 Score=28.72 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=12.0
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 029203 16 GLGYSIAIALGFLVLLSTVL 35 (197)
Q Consensus 16 ~~~~~I~i~i~~~vli~~i~ 35 (197)
++.|+.+|.+|+++++++++
T Consensus 23 aLYFv~gVC~GLlLtLcllV 42 (153)
T PF14851_consen 23 ALYFVSGVCAGLLLTLCLLV 42 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666555543
No 165
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=68.95 E-value=5.1 Score=24.75 Aligned_cols=43 Identities=19% Similarity=0.538 Sum_probs=18.5
Q ss_pred CccccccccccCCcceeecCCCCCccchhhHHHHhhC-----CCCCcccCCC
Q 029203 125 TTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL-----NGSCPVCRNS 171 (197)
Q Consensus 125 ~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~-----~~tCPlCR~~ 171 (197)
..|+|....+.- .+|-.. |.|+-+.+ ++.||.. ...||+|.++
T Consensus 3 L~CPls~~~i~~--P~Rg~~-C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRI--PVRGKN-CKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SS--EEEETT---SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEe--CccCCc-CcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 357777776654 456665 98884221 2346632 2369999763
No 166
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=68.05 E-value=4.2 Score=22.61 Aligned_cols=37 Identities=19% Similarity=0.424 Sum_probs=24.0
Q ss_pred ccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCC
Q 029203 126 TCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSP 172 (197)
Q Consensus 126 ~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l 172 (197)
.|+.|-+.+...+.... . =+..||.+|+ .|..|...|
T Consensus 1 ~C~~C~~~i~~~~~~~~-~-~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLR-A-LGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEE-e-CCccccccCC--------CCcccCCcC
Confidence 37788887776633322 2 4688888874 577776654
No 167
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=67.94 E-value=6 Score=34.23 Aligned_cols=70 Identities=21% Similarity=0.342 Sum_probs=43.0
Q ss_pred CCHHHHhcCCCeeeccccccCCCCCCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCC
Q 029203 96 LDQAVINSYPKFQFTKESVSGNNNSNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRN 170 (197)
Q Consensus 96 l~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~ 170 (197)
|.++.-.-+|...|.+.... .......|-.|.++.......+-- .|.|.||.+|=.--=+.-..||-|..
T Consensus 306 LARSyhhL~PL~~F~Eip~~----~~~~~~~Cf~C~~~~~~~~~y~C~-~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 306 LARSYHHLFPLKPFVEIPET----EYNGSRFCFACQGELLSSGRYRCE-SCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred HHHHHHhhcCCcchhhcccc----ccCCCcceeeeccccCCCCcEEch-hccceeeccchHHHHhhhhcCCCcCC
Confidence 33444455676666555332 222344599997776666555444 49999999994332233457999974
No 168
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=67.10 E-value=1.8 Score=39.03 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhheeccccCCC
Q 029203 17 LGYSIAIALGFLVLLSTVLLASYICCRRNNSSH 49 (197)
Q Consensus 17 ~~~~I~i~i~~~vli~~i~l~~~~~~~~~~~~~ 49 (197)
++.++++++++++ +.++++++..|+++++.+.
T Consensus 355 l~vVlgvavlivV-v~viv~vc~~~rrrR~~~~ 386 (439)
T PF02480_consen 355 LGVVLGVAVLIVV-VGVIVWVCLRCRRRRRQRD 386 (439)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHH-HHHHhheeeeehhcccccc
Confidence 3334444444444 4444445555555555544
No 169
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=66.94 E-value=3.7 Score=25.43 Aligned_cols=40 Identities=18% Similarity=0.404 Sum_probs=26.3
Q ss_pred cccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCCC
Q 029203 127 CSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTP 176 (197)
Q Consensus 127 CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~ 176 (197)
|+-|-..+..++.+.. . -+..||.+|+ +|=.|+..|....
T Consensus 1 C~~C~~~I~~~~~~~~-~-~~~~~H~~Cf--------~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIK-A-MGKFWHPECF--------KCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSSEEEE-E-TTEEEETTTS--------BETTTTCBTTTSS
T ss_pred CCCCCCCccCcEEEEE-e-CCcEEEcccc--------ccCCCCCccCCCe
Confidence 6677777776654432 2 6788888773 6788877775543
No 170
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=66.82 E-value=15 Score=33.62 Aligned_cols=13 Identities=23% Similarity=0.156 Sum_probs=8.9
Q ss_pred chhhHHHHhhCCC
Q 029203 151 HLCCVDAWLKLNG 163 (197)
Q Consensus 151 H~~CI~~Wl~~~~ 163 (197)
++.++-.||+.|.
T Consensus 291 ~kGsL~dyL~~nt 303 (534)
T KOG3653|consen 291 PKGSLCDYLKANT 303 (534)
T ss_pred cCCcHHHHHHhcc
Confidence 3468888887653
No 171
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=66.71 E-value=2.3 Score=34.60 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=12.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhh
Q 029203 16 GLGYSIAIALGFLVLLSTVLLASYI 40 (197)
Q Consensus 16 ~~~~~I~i~i~~~vli~~i~l~~~~ 40 (197)
-+.++|+|+.|++.++++|++++++
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHH
Confidence 3444555555655544444444433
No 172
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=66.22 E-value=4 Score=23.55 Aligned_cols=26 Identities=27% Similarity=0.626 Sum_probs=15.4
Q ss_pred ccccccccccCCcc-------eeecCCCCCccc
Q 029203 126 TCSICLCEYKDLEM-------LRMMPECRHYFH 151 (197)
Q Consensus 126 ~CaICL~~~~~~~~-------vr~l~~C~H~FH 151 (197)
.|+=|-..|.-.+. ...-+.|+|.|+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 57777777764442 123335888875
No 173
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=65.90 E-value=5.3 Score=24.79 Aligned_cols=37 Identities=14% Similarity=0.266 Sum_probs=26.6
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhh
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLK 160 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~ 160 (197)
...|.+|-..|..-..-.....||++|+..|......
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred cCcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 3578999888876544344446999999999876543
No 175
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=65.72 E-value=4.7 Score=34.73 Aligned_cols=48 Identities=17% Similarity=0.242 Sum_probs=37.0
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCC---CCccc
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNG---SCPVC 168 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~---tCPlC 168 (197)
.....+.|++--++-.+...-..|. |||+.-.+-++.--++.. .||+|
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred cccceeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 4456789999877777666667777 999999999988554432 69999
No 176
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.23 E-value=6.7 Score=32.75 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=40.5
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
.....+.|+|---+|...-....+..|||+|-..-+.+ -...+|++|.+..-..
T Consensus 107 ~~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKe--ikas~C~~C~a~y~~~ 160 (293)
T KOG3113|consen 107 TQRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKE--IKASVCHVCGAAYQED 160 (293)
T ss_pred cccceeecccccceecceEEEEEEeccceeccHHHHHH--hhhccccccCCccccc
Confidence 34567889998888776666666667999999888777 2356899998876544
No 177
>PRK14762 membrane protein; Provisional
Probab=65.02 E-value=11 Score=19.86 Aligned_cols=15 Identities=27% Similarity=0.352 Sum_probs=7.6
Q ss_pred chhHHHHHHHHHHHH
Q 029203 16 GLGYSIAIALGFLVL 30 (197)
Q Consensus 16 ~~~~~I~i~i~~~vl 30 (197)
+|.+.|++.+|++++
T Consensus 5 lw~i~iifligllvv 19 (27)
T PRK14762 5 LWAVLIIFLIGLLVV 19 (27)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555543
No 178
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=63.43 E-value=18 Score=24.96 Aligned_cols=22 Identities=9% Similarity=0.253 Sum_probs=10.5
Q ss_pred cccccchhHHHHHHHHHHHHHH
Q 029203 11 YLTNIGLGYSIAIALGFLVLLS 32 (197)
Q Consensus 11 ~~~~~~~~~~I~i~i~~~vli~ 32 (197)
+.....-...+.|++++++++.
T Consensus 18 ~~~~l~pn~lMtILivLVIIiL 39 (85)
T PF10717_consen 18 NLNGLNPNTLMTILIVLVIIIL 39 (85)
T ss_pred cccccChhHHHHHHHHHHHHHH
Confidence 4444444455555554444333
No 179
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=62.98 E-value=15 Score=24.60 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 029203 17 LGYSIAIALGFLVLLSTVLLASYI 40 (197)
Q Consensus 17 ~~~~I~i~i~~~vli~~i~l~~~~ 40 (197)
+.|.+.+...+++++.++++++|+
T Consensus 46 ~~~~~~ii~ii~v~ii~~l~flYL 69 (72)
T PF12575_consen 46 FNWIILIISIIFVLIIVLLTFLYL 69 (72)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333334444453
No 180
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=62.92 E-value=2.9 Score=31.11 Aligned_cols=17 Identities=24% Similarity=0.110 Sum_probs=2.2
Q ss_pred cchhHHHHHHHHHHHHH
Q 029203 15 IGLGYSIAIALGFLVLL 31 (197)
Q Consensus 15 ~~~~~~I~i~i~~~vli 31 (197)
+.+.|.|....+.++++
T Consensus 75 ~~l~~pi~~sal~v~lV 91 (129)
T PF12191_consen 75 FPLLWPILGSALSVVLV 91 (129)
T ss_dssp SSSS-------------
T ss_pred cceehhhhhhHHHHHHH
Confidence 55555554444444433
No 181
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=62.29 E-value=12 Score=27.53 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=9.6
Q ss_pred HHHHHHHHHH-HHHHHHHhheecccc
Q 029203 22 AIALGFLVLL-STVLLASYICCRRNN 46 (197)
Q Consensus 22 ~i~i~~~vli-~~i~l~~~~~~~~~~ 46 (197)
.++||-+..+ +..+.+.++..|++|
T Consensus 87 p~VIGGLcaL~LaamGA~~LLrR~cR 112 (126)
T PF03229_consen 87 PLVIGGLCALTLAAMGAGALLRRCCR 112 (126)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433333 333444444333333
No 182
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=60.83 E-value=5.3 Score=22.36 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=12.9
Q ss_pred CCCCccchhhHHHHhhCCCCCcccCC
Q 029203 145 ECRHYFHLCCVDAWLKLNGSCPVCRN 170 (197)
Q Consensus 145 ~C~H~FH~~CI~~Wl~~~~tCPlCR~ 170 (197)
.|||++-..- ....||.|.+
T Consensus 6 ~CGy~y~~~~------~~~~CP~Cg~ 25 (33)
T cd00350 6 VCGYIYDGEE------APWVCPVCGA 25 (33)
T ss_pred CCCCEECCCc------CCCcCcCCCC
Confidence 3777765433 3448999965
No 183
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=60.75 E-value=16 Score=29.90 Aligned_cols=11 Identities=9% Similarity=0.368 Sum_probs=4.2
Q ss_pred HHHHhheeccc
Q 029203 35 LLASYICCRRN 45 (197)
Q Consensus 35 ~l~~~~~~~~~ 45 (197)
.+++|+.+|.+
T Consensus 48 ~~~~~~~~r~r 58 (226)
T TIGR01433 48 LMTLFFAWKYR 58 (226)
T ss_pred HHHheeeEEEe
Confidence 33344443333
No 184
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=60.30 E-value=1.7 Score=36.94 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=32.2
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNG 163 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~ 163 (197)
..+|.+|+++|..+....... |.-+||..|+-.|+....
T Consensus 214 ~rvC~~CF~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 214 IRVCDICFEELEKGARGDRED-SLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred ceecHHHHHHHhcccccchhh-cccccccccccccccccc
Confidence 349999999999866666666 777999999999997654
No 185
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=59.21 E-value=5.7 Score=21.18 Aligned_cols=23 Identities=30% Similarity=0.645 Sum_probs=11.9
Q ss_pred ccccccccccCCcceeecCCCCCcc
Q 029203 126 TCSICLCEYKDLEMLRMMPECRHYF 150 (197)
Q Consensus 126 ~CaICL~~~~~~~~vr~l~~C~H~F 150 (197)
.|+-|-.++... .+.-|.|||.|
T Consensus 2 ~CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhh--cCcCCCCCCCC
Confidence 456665554333 23344567666
No 186
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=58.68 E-value=5.8 Score=26.11 Aligned_cols=12 Identities=25% Similarity=0.778 Sum_probs=8.8
Q ss_pred ccchhhHHHHhh
Q 029203 149 YFHLCCVDAWLK 160 (197)
Q Consensus 149 ~FH~~CI~~Wl~ 160 (197)
-||+.|+..|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999984
No 187
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=58.53 E-value=15 Score=26.38 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=19.0
Q ss_pred CCccchhhHHHHhhC---------CCCCcccCC
Q 029203 147 RHYFHLCCVDAWLKL---------NGSCPVCRN 170 (197)
Q Consensus 147 ~H~FH~~CI~~Wl~~---------~~tCPlCR~ 170 (197)
.=.|+..||..++.. +..||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 777999999888743 347999987
No 188
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=58.39 E-value=11 Score=28.92 Aligned_cols=7 Identities=14% Similarity=-0.026 Sum_probs=3.4
Q ss_pred CCCcccC
Q 029203 163 GSCPVCR 169 (197)
Q Consensus 163 ~tCPlCR 169 (197)
..|-++.
T Consensus 130 ts~~YyN 136 (158)
T PF11770_consen 130 TSSEYYN 136 (158)
T ss_pred Cchhhhc
Confidence 3455553
No 189
>PRK06287 cobalt transport protein CbiN; Validated
Probab=58.25 E-value=24 Score=25.45 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=19.3
Q ss_pred CCCCCccccc--chhHHHHHHHHHHHHHHHHHHHHh
Q 029203 6 TPSPNYLTNI--GLGYSIAIALGFLVLLSTVLLASY 39 (197)
Q Consensus 6 ~~s~~~~~~~--~~~~~I~i~i~~~vli~~i~l~~~ 39 (197)
+|-|+|.-.. .++++++.++|+++++.++..+..
T Consensus 64 a~lpDY~i~g~~~~g~ilsgiiGv~i~l~l~~~~~~ 99 (107)
T PRK06287 64 SPMPDYSIPGMGKIGEIIAMVIGTLLVLALAYGVGK 99 (107)
T ss_pred CCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445664222 367888888888665555444333
No 190
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.75 E-value=6.3 Score=33.72 Aligned_cols=52 Identities=23% Similarity=0.537 Sum_probs=41.5
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLP 174 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 174 (197)
.......|-||...+...+.. .+|.|.|+..|-..|......||.|+....+
T Consensus 101 ~~~~~~~~~~~~g~l~vpt~~---qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 101 FQQDHDICYICYGKLTVPTRI---QGCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred ccCCccceeeeeeeEEecccc---cCceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 345567899998888766433 2599999999999999999999999886544
No 191
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=57.70 E-value=11 Score=26.94 Aligned_cols=23 Identities=17% Similarity=0.233 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhheecccc
Q 029203 24 ALGFLVLLSTVLLASYICCRRNN 46 (197)
Q Consensus 24 ~i~~~vli~~i~l~~~~~~~~~~ 46 (197)
++.++|++.++.+++...-+++.
T Consensus 71 ~v~IlVily~IyYFVILRer~~~ 93 (101)
T PF06024_consen 71 FVCILVILYAIYYFVILRERQKS 93 (101)
T ss_pred HHHHHHHHhhheEEEEEeccccc
Confidence 34444445555555555555555
No 192
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=57.21 E-value=1.7 Score=31.71 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=0.7
Q ss_pred HHHHHHHHHHHHHHHHhheeccc
Q 029203 23 IALGFLVLLSTVLLASYICCRRN 45 (197)
Q Consensus 23 i~i~~~vli~~i~l~~~~~~~~~ 45 (197)
|.|.+++|.+++++-.+||+||.
T Consensus 29 IGiL~VILgiLLliGCWYckRRS 51 (118)
T PF14991_consen 29 IGILIVILGILLLIGCWYCKRRS 51 (118)
T ss_dssp SS---------------------
T ss_pred ceeHHHHHHHHHHHhheeeeecc
Confidence 33333443444444545555444
No 193
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=57.14 E-value=7.1 Score=22.39 Aligned_cols=26 Identities=31% Similarity=0.692 Sum_probs=16.2
Q ss_pred CccccccccccCCcc--------eeecCCCCCccc
Q 029203 125 TTCSICLCEYKDLEM--------LRMMPECRHYFH 151 (197)
Q Consensus 125 ~~CaICL~~~~~~~~--------vr~l~~C~H~FH 151 (197)
.+|+=|...|.-+|. ++- ++|+|.|+
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C-~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRC-SKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEEC-CCCCCEeC
Confidence 367778777765552 333 35888875
No 194
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=57.03 E-value=3.7 Score=26.91 Aligned_cols=26 Identities=27% Similarity=0.347 Sum_probs=0.4
Q ss_pred HHHHHHH-HHHHHHHHHHHhheecccc
Q 029203 21 IAIALGF-LVLLSTVLLASYICCRRNN 46 (197)
Q Consensus 21 I~i~i~~-~vli~~i~l~~~~~~~~~~ 46 (197)
.+++.|. +++++.+++++++..|.++
T Consensus 12 aavIaG~Vvgll~ailLIlf~iyR~rk 38 (64)
T PF01034_consen 12 AAVIAGGVVGLLFAILLILFLIYRMRK 38 (64)
T ss_dssp -------------------------S-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444 4445555555554444333
No 195
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=56.93 E-value=17 Score=19.82 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 029203 21 IAIALGFLVLLSTVLLASY 39 (197)
Q Consensus 21 I~i~i~~~vli~~i~l~~~ 39 (197)
++++.|.++++.++.+.+|
T Consensus 3 ~~vi~g~llv~lLl~YLvY 21 (29)
T PRK14750 3 FSIVCGALLVLLLLGYLVY 21 (29)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555444444444444
No 196
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=56.22 E-value=6.3 Score=25.41 Aligned_cols=14 Identities=21% Similarity=0.755 Sum_probs=10.5
Q ss_pred CCCCCcccCCCCCC
Q 029203 161 LNGSCPVCRNSPLP 174 (197)
Q Consensus 161 ~~~tCPlCR~~l~~ 174 (197)
...+||+|..++..
T Consensus 38 ~~p~CPlC~s~M~~ 51 (59)
T PF14169_consen 38 EEPVCPLCKSPMVS 51 (59)
T ss_pred CCccCCCcCCcccc
Confidence 34689999988754
No 197
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=56.12 E-value=27 Score=24.90 Aligned_cols=14 Identities=14% Similarity=0.534 Sum_probs=7.4
Q ss_pred HHHHHHHhheeccc
Q 029203 32 STVLLASYICCRRN 45 (197)
Q Consensus 32 ~~i~l~~~~~~~~~ 45 (197)
.-++..++||.|+.
T Consensus 32 vGl~aGLfFcvR~~ 45 (106)
T PF14654_consen 32 VGLFAGLFFCVRNS 45 (106)
T ss_pred HHHHHHHHHHhhhc
Confidence 33445556666553
No 198
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=56.09 E-value=16 Score=31.49 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhheecccc
Q 029203 19 YSIAIALGFLVLLSTVLLASYICCRRNN 46 (197)
Q Consensus 19 ~~I~i~i~~~vli~~i~l~~~~~~~~~~ 46 (197)
+.+.+++.+++++.++++++|+.++.|.
T Consensus 44 i~~~~~~~liv~i~V~~l~~~f~~ryR~ 71 (315)
T PRK10525 44 ILTAFGLMLIVVIPAILMAVGFAWKYRA 71 (315)
T ss_pred HHHHHHHHHhhHHHHHHHHheeEEEEec
Confidence 3444444444545555555555544443
No 199
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=55.65 E-value=10 Score=20.51 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=10.6
Q ss_pred ccccccccccCCcceeecCCCCCccchhhH
Q 029203 126 TCSICLCEYKDLEMLRMMPECRHYFHLCCV 155 (197)
Q Consensus 126 ~CaICL~~~~~~~~vr~l~~C~H~FH~~CI 155 (197)
.|.+|-..... +....-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 57888777665 344444459999999985
No 200
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=55.47 E-value=14 Score=25.48 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=12.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhee
Q 029203 16 GLGYSIAIALGFLVLLSTVLLASYICC 42 (197)
Q Consensus 16 ~~~~~I~i~i~~~vli~~i~l~~~~~~ 42 (197)
.|.|+|+-....++++++.+..+.+|.
T Consensus 15 ~~yyiiA~gga~llL~~v~l~vvL~C~ 41 (87)
T PF11980_consen 15 YWYYIIAMGGALLLLVAVCLGVVLYCH 41 (87)
T ss_pred eeeHHHhhccHHHHHHHHHHHHHHhhh
Confidence 355566655555554444433333343
No 201
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=55.36 E-value=37 Score=25.25 Aligned_cols=7 Identities=14% Similarity=0.145 Sum_probs=2.6
Q ss_pred Hhheecc
Q 029203 38 SYICCRR 44 (197)
Q Consensus 38 ~~~~~~~ 44 (197)
+.|..||
T Consensus 35 ~aWLlkR 41 (124)
T PRK11486 35 AAWLVKR 41 (124)
T ss_pred HHHHHHH
Confidence 3333333
No 202
>PHA02849 putative transmembrane protein; Provisional
Probab=55.17 E-value=20 Score=24.36 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=14.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhh
Q 029203 15 IGLGYSIAIALGFLVLLSTVLLASYI 40 (197)
Q Consensus 15 ~~~~~~I~i~i~~~vli~~i~l~~~~ 40 (197)
++.|.+..|.+.++++.+++.+++|+
T Consensus 12 f~~g~v~vi~v~v~vI~i~~flLlyL 37 (82)
T PHA02849 12 FDAGAVTVILVFVLVISFLAFMLLYL 37 (82)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666665555555555553
No 203
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=55.16 E-value=14 Score=31.98 Aligned_cols=50 Identities=24% Similarity=0.547 Sum_probs=37.0
Q ss_pred CCCccccccccccCCc-ceeecCCCCCccchhhHHHHhhCCCCCcccCCCCC
Q 029203 123 INTTCSICLCEYKDLE-MLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~-~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 173 (197)
-...|+||-+.....+ ...-.| |+|.-|..|...=...+.+||.||....
T Consensus 248 v~~s~p~~~~~~~~~d~~~lP~~-~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 248 VPPSCPICYEDLDLTDSNFLPCP-CGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred cCCCCCCCCCccccccccccccc-ccccchhhhhhcccccCCCCCccCCccc
Confidence 3479999999874444 333344 7888888888887788899999996553
No 204
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=55.03 E-value=26 Score=23.57 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=7.8
Q ss_pred ccccchhHHHHHHHHHHH
Q 029203 12 LTNIGLGYSIAIALGFLV 29 (197)
Q Consensus 12 ~~~~~~~~~I~i~i~~~v 29 (197)
.+...+.+.+++++|+++
T Consensus 55 ~P~~~lil~l~~~~Gl~l 72 (82)
T PF13807_consen 55 SPKRALILALGLFLGLIL 72 (82)
T ss_pred CCcHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 205
>PHA02657 hypothetical protein; Provisional
Probab=54.20 E-value=23 Score=24.61 Aligned_cols=34 Identities=21% Similarity=0.414 Sum_probs=19.2
Q ss_pred CCCC-cccccchhHHHHHHHHHHHHHHHHHHHHhh
Q 029203 7 PSPN-YLTNIGLGYSIAIALGFLVLLSTVLLASYI 40 (197)
Q Consensus 7 ~s~~-~~~~~~~~~~I~i~i~~~vli~~i~l~~~~ 40 (197)
|++. |.--+.|-.+..|.++++++.+++.+++|+
T Consensus 13 ~~~~~~~~~~~~~~imVitvfv~vI~il~flLLYL 47 (95)
T PHA02657 13 PADNYYYMKINFESILVFTIFIFVVCILIYLLIYL 47 (95)
T ss_pred cCCceEEEEecchhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444 334455666666666666655555555554
No 206
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=53.76 E-value=22 Score=24.28 Aligned_cols=52 Identities=23% Similarity=0.329 Sum_probs=21.3
Q ss_pred CCCCcccccccccc---CCcceeecCCCCCccchhhHHHHhh-CCCCCcccCCCCC
Q 029203 122 NINTTCSICLCEYK---DLEMLRMMPECRHYFHLCCVDAWLK-LNGSCPVCRNSPL 173 (197)
Q Consensus 122 ~~~~~CaICL~~~~---~~~~vr~l~~C~H~FH~~CI~~Wl~-~~~tCPlCR~~l~ 173 (197)
.+...|.||=+++. +|+.......|+--.++.|.+-=.+ .++.||.|+...-
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred cCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 45679999988874 4443333335788888889866443 4668999997653
No 207
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=53.66 E-value=16 Score=28.07 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=26.3
Q ss_pred CCCcccccchhHHHHHHHHHHHHHHHHHHHHhheeccc
Q 029203 8 SPNYLTNIGLGYSIAIALGFLVLLSTVLLASYICCRRN 45 (197)
Q Consensus 8 s~~~~~~~~~~~~I~i~i~~~vli~~i~l~~~~~~~~~ 45 (197)
.++..+.-...+.|+|++.+++++.++.++.--.+++-
T Consensus 23 ~psffsthm~tILiaIvVliiiiivli~lcssRKkKaa 60 (189)
T PF05568_consen 23 PPSFFSTHMYTILIAIVVLIIIIIVLIYLCSSRKKKAA 60 (189)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 45666777777788888888777777777666554444
No 208
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=53.39 E-value=26 Score=26.06 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=20.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhheecccc
Q 029203 13 TNIGLGYSIAIALGFLVLLSTVLLASYICCRRNN 46 (197)
Q Consensus 13 ~~~~~~~~I~i~i~~~vli~~i~l~~~~~~~~~~ 46 (197)
+...|-|.|..+.++++++.++++..-+-.-|+|
T Consensus 31 D~tpWNysiL~Ls~vvlvi~~~LLgrsi~ANRnr 64 (125)
T PF15048_consen 31 DATPWNYSILALSFVVLVISFFLLGRSIQANRNR 64 (125)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHhHhcccc
Confidence 3456778777766666666666665554433333
No 209
>PHA03265 envelope glycoprotein D; Provisional
Probab=53.15 E-value=6.5 Score=34.35 Aligned_cols=12 Identities=33% Similarity=0.733 Sum_probs=7.2
Q ss_pred HHHHhheecccc
Q 029203 35 LLASYICCRRNN 46 (197)
Q Consensus 35 ~l~~~~~~~~~~ 46 (197)
-.++|+|+||+.
T Consensus 365 g~il~~~~rr~k 376 (402)
T PHA03265 365 GVILYVCLRRKK 376 (402)
T ss_pred hHHHHHHhhhhh
Confidence 345566766665
No 210
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=52.72 E-value=21 Score=24.34 Aligned_cols=8 Identities=25% Similarity=0.800 Sum_probs=2.7
Q ss_pred HHHHHhhe
Q 029203 34 VLLASYIC 41 (197)
Q Consensus 34 i~l~~~~~ 41 (197)
+++++++|
T Consensus 81 ~~i~~~~~ 88 (89)
T PF00957_consen 81 LIIIIVIC 88 (89)
T ss_dssp HHHHHTT-
T ss_pred hHHHHHHh
Confidence 33333333
No 211
>PF15347 PAG: Phosphoprotein associated with glycosphingolipid-enriched
Probab=52.24 E-value=9 Score=33.77 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=18.4
Q ss_pred CCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhheec
Q 029203 6 TPSPNYLTNIGLGYSIAIALGFLVLLSTVLLASYICCR 43 (197)
Q Consensus 6 ~~s~~~~~~~~~~~~I~i~i~~~vli~~i~l~~~~~~~ 43 (197)
+|.++.+++...-+++|..++.+.++++|.+++++|-.
T Consensus 2 gp~g~~Ls~gq~qivlwgsLaav~~f~lis~LifLCsS 39 (428)
T PF15347_consen 2 GPEGSLLSSGQVQIVLWGSLAAVTTFLLISFLIFLCSS 39 (428)
T ss_pred CCccccccCCceeEEeehHHHHHHHHHHHHHHHHHhhc
Confidence 35555566555444444454444444444444444433
No 212
>PHA02819 hypothetical protein; Provisional
Probab=52.06 E-value=35 Score=22.74 Aligned_cols=28 Identities=7% Similarity=0.056 Sum_probs=13.1
Q ss_pred CCcccccchhHHHHHHHHHHHHHHHHHH
Q 029203 9 PNYLTNIGLGYSIAIALGFLVLLSTVLL 36 (197)
Q Consensus 9 ~~~~~~~~~~~~I~i~i~~~vli~~i~l 36 (197)
.+......+.++|+++++++++++.+++
T Consensus 39 ~~~~~~~~~~~ii~l~~~~~~~~~~flY 66 (71)
T PHA02819 39 KTKKSFLRYYLIIGLVTIVFVIIFIIFY 66 (71)
T ss_pred cccCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444445555555555554443
No 213
>PHA03164 hypothetical protein; Provisional
Probab=51.55 E-value=25 Score=23.86 Aligned_cols=23 Identities=13% Similarity=0.430 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhe
Q 029203 18 GYSIAIALGFLVLLSTVLLASYIC 41 (197)
Q Consensus 18 ~~~I~i~i~~~vli~~i~l~~~~~ 41 (197)
.+++.-.+++.++++ +++++|++
T Consensus 59 tFlvLtgLaIamILf-iifvlyvF 81 (88)
T PHA03164 59 TFLVLTGLAIAMILF-IIFVLYVF 81 (88)
T ss_pred ehHHHHHHHHHHHHH-HHHHHHhe
Confidence 334433333333333 33344443
No 214
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=51.20 E-value=19 Score=32.09 Aligned_cols=39 Identities=26% Similarity=0.294 Sum_probs=19.1
Q ss_pred CCCcccccchhHHHHHHHHHHHHHHHHHHHHhheecccc
Q 029203 8 SPNYLTNIGLGYSIAIALGFLVLLSTVLLASYICCRRNN 46 (197)
Q Consensus 8 s~~~~~~~~~~~~I~i~i~~~vli~~i~l~~~~~~~~~~ 46 (197)
+++|.-..++.-.++.++..+.+++++++.+..|++|++
T Consensus 12 ~~~Y~qsL~~la~v~~~~l~l~Ll~ll~yl~~~CC~r~~ 50 (406)
T PF04906_consen 12 DEEYQQSLLILASVAAACLALSLLFLLIYLICRCCCRRP 50 (406)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 456666666554444444444444444444444554444
No 215
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=51.08 E-value=29 Score=23.99 Aligned_cols=9 Identities=11% Similarity=-0.130 Sum_probs=3.8
Q ss_pred CCCCccccc
Q 029203 7 PSPNYLTNI 15 (197)
Q Consensus 7 ~s~~~~~~~ 15 (197)
+|....++.
T Consensus 14 ~si~d~DQL 22 (84)
T PF06143_consen 14 NSILDYDQL 22 (84)
T ss_pred CCCCcHHHH
Confidence 444444433
No 216
>PTZ00046 rifin; Provisional
Probab=50.85 E-value=14 Score=32.44 Aligned_cols=13 Identities=15% Similarity=0.621 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHhh
Q 029203 28 LVLLSTVLLASYI 40 (197)
Q Consensus 28 ~vli~~i~l~~~~ 40 (197)
+|+++++++++|+
T Consensus 324 IvVIVLIMvIIYL 336 (358)
T PTZ00046 324 IVVIVLIMVIIYL 336 (358)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444443
No 217
>PHA03163 hypothetical protein; Provisional
Probab=50.82 E-value=28 Score=24.29 Aligned_cols=37 Identities=16% Similarity=0.366 Sum_probs=19.5
Q ss_pred CCCcccccchhHHHHHHHHH-HHHHHHHHHHHhheecc
Q 029203 8 SPNYLTNIGLGYSIAIALGF-LVLLSTVLLASYICCRR 44 (197)
Q Consensus 8 s~~~~~~~~~~~~I~i~i~~-~vli~~i~l~~~~~~~~ 44 (197)
|+.|..++.---.|++++-+ +++++.+++..|.|..+
T Consensus 47 ADtY~psL~SFSSIWaliNv~Ivl~A~~iyL~y~CF~k 84 (92)
T PHA03163 47 ADRFAPQLLSFSSIWAILNVLIMLIACIIYCIYMCFNK 84 (92)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555544455555554 44444555566666543
No 218
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=50.61 E-value=23 Score=27.18 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 029203 19 YSIAIALGFLVLLSTVLLASY 39 (197)
Q Consensus 19 ~~I~i~i~~~vli~~i~l~~~ 39 (197)
.+++|.+.+++++.++++.++
T Consensus 121 lilaisvtvv~~iliii~CLi 141 (154)
T PF14914_consen 121 LILAISVTVVVMILIIIFCLI 141 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 344554444444444433333
No 219
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=50.56 E-value=5.5 Score=37.80 Aligned_cols=52 Identities=27% Similarity=0.453 Sum_probs=33.6
Q ss_pred CCCCccccccccccCCc--ceeecC----CCCCccchhhHHHH--h--------hCCCCCcccCCCCC
Q 029203 122 NINTTCSICLCEYKDLE--MLRMMP----ECRHYFHLCCVDAW--L--------KLNGSCPVCRNSPL 173 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~--~vr~l~----~C~H~FH~~CI~~W--l--------~~~~tCPlCR~~l~ 173 (197)
.....|-||-|+=.+.+ .-.-|. +|.-.||..|...- | .+-+.|-+|+..+-
T Consensus 115 RfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hfs 182 (900)
T KOG0956|consen 115 RFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFS 182 (900)
T ss_pred hhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHH
Confidence 34579999988854433 111121 48899999998652 1 23347999987663
No 220
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=50.37 E-value=10 Score=32.14 Aligned_cols=28 Identities=36% Similarity=0.338 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhheecc
Q 029203 17 LGYSIAIALGFLVLLSTVLLASYICCRR 44 (197)
Q Consensus 17 ~~~~I~i~i~~~vli~~i~l~~~~~~~~ 44 (197)
+++.++|++|+++++.++-+++++..|+
T Consensus 230 VlIslAiALG~v~ll~l~Gii~~~~~r~ 257 (281)
T PF12768_consen 230 VLISLAIALGTVFLLVLIGIILAYIRRR 257 (281)
T ss_pred EEEehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456666777766666655555555444
No 221
>PHA02844 putative transmembrane protein; Provisional
Probab=50.36 E-value=38 Score=22.79 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=13.3
Q ss_pred CCcccccchhHHHHHHHHHHHHHHHHHH
Q 029203 9 PNYLTNIGLGYSIAIALGFLVLLSTVLL 36 (197)
Q Consensus 9 ~~~~~~~~~~~~I~i~i~~~vli~~i~l 36 (197)
.+..+...+.++|+++++++++++.+++
T Consensus 41 ~~~~~~~~~~~ii~i~~v~~~~~~~flY 68 (75)
T PHA02844 41 NNVCSSSTKIWILTIIFVVFATFLTFLY 68 (75)
T ss_pred cccCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444445555555555555443
No 222
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=50.33 E-value=11 Score=31.62 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=31.5
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhCCC--CCccc
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNG--SCPVC 168 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~--tCPlC 168 (197)
...|+|-...+.++ + +..+|||+|-++=|...+.... .||+=
T Consensus 176 s~rdPis~~~I~nP--v-iSkkC~HvydrDsI~~~l~~~~~i~CPv~ 219 (262)
T KOG2979|consen 176 SNRDPISKKPIVNP--V-ISKKCGHVYDRDSIMQILCDEITIRCPVL 219 (262)
T ss_pred cccCchhhhhhhch--h-hhcCcCcchhhhhHHHHhccCceeecccc
Confidence 46788888877776 2 3335999999999999997644 47763
No 223
>PF00539 Tat: Transactivating regulatory protein (Tat); InterPro: IPR001831 Like other lentiviruses, Human immunodeficiency virus 1 (HIV-1) encodes a trans-activating regulatory protein (Tat), which is essential for efficient transcription of the viral genome [, ]. Tat acts by binding to an RNA stem-loop structure, the trans-activating response element (TAR), found at the 5' ends of nascent HIV-1 transcripts. In binding to TAR, Tat alters the properties of the transcription complex, recruits a positive transcription elongation complex (P-TEFb) and hence increases the production of full-length viral RNA []. Tat protein also associates with RNA polymerase II complexes during early transcription elongation after the promoter clearance and before the synthesis of full-length TAR RNA transcript. This interaction of Tat with RNA polymerase II elongation complexes is P-TEFb-independent. There are two Tat binding sites on each transcription elongation complex; one is located on TAR RNA and the other one on RNA polymerase II near the exit site for nascent mRNA transcripts which suggests that two Tat molecules are involved in performing various functions during a single round of HIV-1 mRNA synthesis []. The minimum Tat sequence that can mediate specific TAR binding in vitro has been mapped to a basic domain of 10 amino acids, comprising mostly Arg and Lys residues. Regulatory activity, however, also requires the 47 N-terminal residues, which interact with components of the transcription complex and function as a transcriptional activation domain [, , ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0042025 host cell nucleus; PDB: 2W2H_D 1ZBN_B 1TVS_A 1TVT_A 3O6L_C 3O6M_C 3MI9_C 3MIA_C 1JFW_A 1TBC_A ....
Probab=49.94 E-value=12 Score=24.80 Aligned_cols=37 Identities=22% Similarity=0.453 Sum_probs=22.2
Q ss_pred ccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCCCCCC
Q 029203 132 CEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTPLST 179 (197)
Q Consensus 132 ~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~~~~ 179 (197)
+.+...-.--.++ |+..|++.| -..|.+| ++.+++.-
T Consensus 14 e~w~~p~s~P~t~-Cn~CyCK~C-------cyHCqlC---Fl~KgLGI 50 (68)
T PF00539_consen 14 EPWKHPGSQPLTP-CNKCYCKKC-------CYHCQLC---FLQKGLGI 50 (68)
T ss_dssp STTSS-SSSTTSS-SSSSSSTTS-------TSSSSCC---CCCTSSST
T ss_pred ccccCCCCCCCCC-cCCcccCcc-------eeeceee---eeeCCCcc
Confidence 4444333334555 999999888 4568888 44555543
No 224
>KOG4482 consensus Sarcoglycan complex, alpha/epsilon subunits [Function unknown]
Probab=49.85 E-value=25 Score=31.15 Aligned_cols=44 Identities=30% Similarity=0.438 Sum_probs=20.3
Q ss_pred CCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhheecccc
Q 029203 2 STPATPSPNYLTNIGLGYSIAIALGFLVLLSTVLLASYICCRRNN 46 (197)
Q Consensus 2 ~~~~~~s~~~~~~~~~~~~I~i~i~~~vli~~i~l~~~~~~~~~~ 46 (197)
..+++.++.--.-..|.+..+|.+++.+ +++++++.++|.+|..
T Consensus 282 ~~~~~e~p~Rdyy~df~~tfaIpl~Val-ll~~~La~imc~rrEg 325 (449)
T KOG4482|consen 282 LNPPPEQPPRDYYGDFLHTFAIPLGVAL-LLVLALAYIMCCRREG 325 (449)
T ss_pred cCCCccCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhc
Confidence 3455555552222334444444444443 3334445555665554
No 225
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=49.62 E-value=33 Score=23.18 Aligned_cols=9 Identities=11% Similarity=0.069 Sum_probs=3.4
Q ss_pred HHHHHHHhh
Q 029203 32 STVLLASYI 40 (197)
Q Consensus 32 ~~i~l~~~~ 40 (197)
..+-+++.|
T Consensus 18 ap~WL~lHY 26 (75)
T PF06667_consen 18 APIWLILHY 26 (75)
T ss_pred HHHHHHHHH
Confidence 333334433
No 226
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=49.45 E-value=20 Score=30.98 Aligned_cols=54 Identities=19% Similarity=0.443 Sum_probs=36.0
Q ss_pred CCCCCCcccccccccc---------------CCc-ceeecCCCCCccchhhHHHHhhC---------CCCCcccCCCCCC
Q 029203 120 SNNINTTCSICLCEYK---------------DLE-MLRMMPECRHYFHLCCVDAWLKL---------NGSCPVCRNSPLP 174 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~---------------~~~-~vr~l~~C~H~FH~~CI~~Wl~~---------~~tCPlCR~~l~~ 174 (197)
......+|++|+..-. .+- .....| |||.--..=..-|-+. |..||.|-..|..
T Consensus 337 ~g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 337 TGQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cCcccCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 4455789999987521 111 223556 9999777778888743 3479999776643
No 227
>PLN02189 cellulose synthase
Probab=49.11 E-value=19 Score=35.95 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=36.4
Q ss_pred CCCCcccccccccc---CCcceeecCCCCCccchhhHHHHh-hCCCCCcccCCCCC
Q 029203 122 NINTTCSICLCEYK---DLEMLRMMPECRHYFHLCCVDAWL-KLNGSCPVCRNSPL 173 (197)
Q Consensus 122 ~~~~~CaICL~~~~---~~~~vr~l~~C~H~FH~~CI~~Wl-~~~~tCPlCR~~l~ 173 (197)
.....|.||-+++. +|+.-.....|+--.|+.|.+-=. +.++.||.|+...-
T Consensus 32 ~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 32 LDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 34569999999975 444444444577779999984322 33568999998764
No 228
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=49.00 E-value=16 Score=32.03 Aligned_cols=9 Identities=11% Similarity=0.497 Sum_probs=3.7
Q ss_pred HHHHHHHhh
Q 029203 32 STVLLASYI 40 (197)
Q Consensus 32 ~~i~l~~~~ 40 (197)
+++++++|+
T Consensus 323 VLIMvIIYL 331 (353)
T TIGR01477 323 VLIMVIIYL 331 (353)
T ss_pred HHHHHHHHH
Confidence 333444443
No 229
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=48.34 E-value=23 Score=32.24 Aligned_cols=49 Identities=29% Similarity=0.700 Sum_probs=32.1
Q ss_pred CCccccccc-cccCCcceeecCCCCCccchhhHHHHhhC--------CCCCcccCCCC
Q 029203 124 NTTCSICLC-EYKDLEMLRMMPECRHYFHLCCVDAWLKL--------NGSCPVCRNSP 172 (197)
Q Consensus 124 ~~~CaICL~-~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~--------~~tCPlCR~~l 172 (197)
...|++|.. ..-....+....+|+--||..|-..-.+. ..-|=.|....
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 445999984 33344455555578999999998765421 22588886544
No 230
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=47.98 E-value=4.3 Score=24.05 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=15.2
Q ss_pred CCCCccchhhHHHHhhCCCCCcccCC
Q 029203 145 ECRHYFHLCCVDAWLKLNGSCPVCRN 170 (197)
Q Consensus 145 ~C~H~FH~~CI~~Wl~~~~tCPlCR~ 170 (197)
+|||.|-..--..= .....||.|..
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 48888865432111 23457999987
No 231
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=47.52 E-value=14 Score=26.25 Aligned_cols=32 Identities=25% Similarity=0.476 Sum_probs=22.4
Q ss_pred CCCccccccccccCCcce--eecCCCCCccchhhHHH
Q 029203 123 INTTCSICLCEYKDLEML--RMMPECRHYFHLCCVDA 157 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~v--r~l~~C~H~FH~~CI~~ 157 (197)
....|.||-.. .|..+ ... +|...||..|...
T Consensus 54 ~~~~C~iC~~~--~G~~i~C~~~-~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKS--GGACIKCSHP-GCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCC--CceeEEcCCC-CCCcCCCHHHHHH
Confidence 35799999887 33322 222 4888999999865
No 232
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=46.94 E-value=5.8 Score=24.95 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=15.6
Q ss_pred cceeecCCCCCccchhhHHHH
Q 029203 138 EMLRMMPECRHYFHLCCVDAW 158 (197)
Q Consensus 138 ~~vr~l~~C~H~FH~~CI~~W 158 (197)
+.....+.|+|.|+..|-.+|
T Consensus 38 ~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 38 CNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCeeECCCCCCeECCCCCCcC
Confidence 344455459999999998887
No 233
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=46.69 E-value=16 Score=35.18 Aligned_cols=48 Identities=21% Similarity=0.607 Sum_probs=31.5
Q ss_pred CCCCCcccccccccc----CCc-----ceeecCCCCCccchhhHHHHhhCCCCCcccCCCC
Q 029203 121 NNINTTCSICLCEYK----DLE-----MLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSP 172 (197)
Q Consensus 121 ~~~~~~CaICL~~~~----~~~-----~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l 172 (197)
...+..|+-|...|- .|. ..-..|.|.|.-|..=|.. +..||+|...+
T Consensus 1128 ~~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1128 DPYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSME 1184 (1189)
T ss_pred CccCCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChh
Confidence 345667777776662 222 2345567999998877644 67899997644
No 234
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=46.55 E-value=44 Score=27.92 Aligned_cols=18 Identities=11% Similarity=0.170 Sum_probs=9.6
Q ss_pred ccccchhHHHHHHHHHHH
Q 029203 12 LTNIGLGYSIAIALGFLV 29 (197)
Q Consensus 12 ~~~~~~~~~I~i~i~~~v 29 (197)
....+|+|+.+|++.+++
T Consensus 195 ~~~~~~g~f~wl~i~~~l 212 (268)
T PF09451_consen 195 DSSGGWGFFTWLFIILFL 212 (268)
T ss_pred CccccccHHHHHHHHHHH
Confidence 335667766555444433
No 235
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=46.22 E-value=15 Score=23.74 Aligned_cols=11 Identities=27% Similarity=1.026 Sum_probs=7.5
Q ss_pred CCCCcccCCCC
Q 029203 162 NGSCPVCRNSP 172 (197)
Q Consensus 162 ~~tCPlCR~~l 172 (197)
+..||+|+..+
T Consensus 2 k~~CPlCkt~~ 12 (61)
T PF05715_consen 2 KSLCPLCKTTL 12 (61)
T ss_pred CccCCcccchh
Confidence 34678887766
No 236
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=46.03 E-value=20 Score=30.93 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=4.8
Q ss_pred HHHHHHhheecc
Q 029203 33 TVLLASYICCRR 44 (197)
Q Consensus 33 ~i~l~~~~~~~~ 44 (197)
.++++.|.|+|.
T Consensus 213 Aliva~~cW~Rl 224 (341)
T PF06809_consen 213 ALIVAGYCWYRL 224 (341)
T ss_pred HHHHhhheEEEe
Confidence 344444433333
No 237
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=45.44 E-value=13 Score=22.65 Aligned_cols=18 Identities=33% Similarity=0.480 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 029203 17 LGYSIAIALGFLVLLSTV 34 (197)
Q Consensus 17 ~~~~I~i~i~~~vli~~i 34 (197)
|.+.+.|++|+++++.++
T Consensus 2 Wl~V~~iilg~~ll~~Li 19 (49)
T PF05624_consen 2 WLFVVLIILGALLLLLLI 19 (49)
T ss_pred eEEEeHHHHHHHHHHHHH
Confidence 445556666666544433
No 238
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=45.42 E-value=6.7 Score=36.58 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=3.2
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHhh
Q 029203 11 YLTNIGLGYSIAIALGFLVLLSTVLLASYI 40 (197)
Q Consensus 11 ~~~~~~~~~~I~i~i~~~vli~~i~l~~~~ 40 (197)
+.+-..|+|.+|++|++.++++++++++.+
T Consensus 540 ~e~YiKWPWyVWL~i~~~li~~~~~l~~~~ 569 (610)
T PF01601_consen 540 YETYIKWPWYVWLAIILALIAFALILLWCC 569 (610)
T ss_dssp CCCHH-------------------------
T ss_pred eeEEeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556678999999988887766655554443
No 239
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=45.27 E-value=17 Score=29.69 Aligned_cols=28 Identities=21% Similarity=0.231 Sum_probs=17.9
Q ss_pred CcccccchhHHHHHHHHHHHHHHHHHHH
Q 029203 10 NYLTNIGLGYSIAIALGFLVLLSTVLLA 37 (197)
Q Consensus 10 ~~~~~~~~~~~I~i~i~~~vli~~i~l~ 37 (197)
.....+.++++-+++.+++||++++++.
T Consensus 34 ~d~~~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 34 KDYVKIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred ccceeeeeeeecchhhhHHHHHHHHHHH
Confidence 4566777777777766666665555554
No 240
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=45.20 E-value=30 Score=28.15 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029203 20 SIAIALGFLVLLSTVLLAS 38 (197)
Q Consensus 20 ~I~i~i~~~vli~~i~l~~ 38 (197)
+..|+|++++||+.++++.
T Consensus 132 IClIIIAVLfLICT~LfLS 150 (227)
T PF05399_consen 132 ICLIIIAVLFLICTLLFLS 150 (227)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345556666666555443
No 241
>PRK05978 hypothetical protein; Provisional
Probab=45.10 E-value=15 Score=28.20 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=20.1
Q ss_pred CCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 147 RHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 147 ~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
||+|+ .+|+.+.+||.|-.++...
T Consensus 42 G~LF~-----g~Lkv~~~C~~CG~~~~~~ 65 (148)
T PRK05978 42 GKLFR-----AFLKPVDHCAACGEDFTHH 65 (148)
T ss_pred Ccccc-----cccccCCCccccCCccccC
Confidence 58886 7899999999998887554
No 242
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=44.79 E-value=51 Score=24.12 Aligned_cols=17 Identities=12% Similarity=0.213 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHHHHHH
Q 029203 17 LGYSIAIALGFLVLLST 33 (197)
Q Consensus 17 ~~~~I~i~i~~~vli~~ 33 (197)
..|++++++.++|-+++
T Consensus 61 ~lffvglii~LivSLaL 77 (128)
T PF15145_consen 61 SLFFVGLIIVLIVSLAL 77 (128)
T ss_pred eehHHHHHHHHHHHHHH
Confidence 34455555554444333
No 243
>PHA02650 hypothetical protein; Provisional
Probab=44.55 E-value=51 Score=22.51 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 029203 17 LGYSIAIALGFLVLLSTVLL 36 (197)
Q Consensus 17 ~~~~I~i~i~~~vli~~i~l 36 (197)
+.++|+++++++++++.+++
T Consensus 50 ~~~ii~i~~v~i~~l~~flY 69 (81)
T PHA02650 50 QNFIFLIFSLIIVALFSFFV 69 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444443
No 244
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=44.37 E-value=28 Score=27.73 Aligned_cols=11 Identities=18% Similarity=0.322 Sum_probs=4.2
Q ss_pred HHHHHHHhhee
Q 029203 32 STVLLASYICC 42 (197)
Q Consensus 32 ~~i~l~~~~~~ 42 (197)
.+..+++|+..
T Consensus 26 ~V~~~l~~~~~ 36 (201)
T TIGR02866 26 LVAALLAYVVW 36 (201)
T ss_pred HHHHHHHHhhh
Confidence 33333444333
No 245
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=43.90 E-value=44 Score=23.74 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=11.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhe
Q 029203 16 GLGYSIAIALGFLVLLSTVLLASYIC 41 (197)
Q Consensus 16 ~~~~~I~i~i~~~vli~~i~l~~~~~ 41 (197)
+|.|+|++ +++....++.+++|.+
T Consensus 23 ~Wl~~i~~--~~v~~~t~~~l~iYp~ 46 (97)
T PF04834_consen 23 YWLYAIGI--VLVFCSTFFSLAIYPC 46 (97)
T ss_pred HHHHHHHH--HHHHHHHHHHHhhhhe
Confidence 44444444 3333334444555554
No 246
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=43.83 E-value=37 Score=23.78 Aligned_cols=6 Identities=0% Similarity=-0.119 Sum_probs=2.4
Q ss_pred cccccc
Q 029203 11 YLTNIG 16 (197)
Q Consensus 11 ~~~~~~ 16 (197)
.++..+
T Consensus 33 ~ws~vv 38 (91)
T PF01708_consen 33 PWSRVV 38 (91)
T ss_pred cceeEe
Confidence 344444
No 247
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=43.48 E-value=34 Score=23.50 Aligned_cols=8 Identities=13% Similarity=0.015 Sum_probs=3.1
Q ss_pred cCCCCCHH
Q 029203 92 LVVGLDQA 99 (197)
Q Consensus 92 ~~~~l~~~ 99 (197)
.+.|-.++
T Consensus 56 ES~Gd~Ee 63 (81)
T PF00558_consen 56 ESDGDEEE 63 (81)
T ss_dssp TTTTCCHH
T ss_pred CCCCcHHH
Confidence 33343333
No 248
>PF15013 CCSMST1: CCSMST1 family
Probab=43.43 E-value=15 Score=24.95 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=10.5
Q ss_pred HHHHHHHHhheecccc
Q 029203 31 LSTVLLASYICCRRNN 46 (197)
Q Consensus 31 i~~i~l~~~~~~~~~~ 46 (197)
++++++++|||+.|..
T Consensus 38 ~sl~~fliyFC~lReE 53 (77)
T PF15013_consen 38 LSLAAFLIYFCFLREE 53 (77)
T ss_pred HHHHHHHHHHhhcccc
Confidence 3445667788877655
No 249
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=43.16 E-value=35 Score=26.50 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 029203 17 LGYSIAIALGFLVLLSTVLLASY 39 (197)
Q Consensus 17 ~~~~I~i~i~~~vli~~i~l~~~ 39 (197)
|+.+++.++.|+++++++..++|
T Consensus 18 ~~t~~~~iInFliL~~lL~~~l~ 40 (173)
T PRK13453 18 WGTVIVTVLTFIVLLALLKKFAW 40 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555444444433
No 250
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=43.00 E-value=36 Score=25.91 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=14.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHh
Q 029203 15 IGLGYSIAIALGFLVLLSTVLLASY 39 (197)
Q Consensus 15 ~~~~~~I~i~i~~~vli~~i~l~~~ 39 (197)
+.|+.+++.++.|+++++++..++|
T Consensus 3 ~~~~~~~~~~inF~il~~iL~~f~~ 27 (159)
T PRK13461 3 INIPTIIATIINFIILLLILKHFFF 27 (159)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455566666666665555544443
No 251
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.88 E-value=14 Score=31.50 Aligned_cols=42 Identities=17% Similarity=0.331 Sum_probs=29.8
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLN 162 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~ 162 (197)
......|.+|.|.+++.-=|.--.-=.|-||..|-.+-++.+
T Consensus 265 ~~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 265 PSAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CCCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence 344589999999998864332111117999999999988764
No 252
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=42.87 E-value=7.8 Score=25.89 Aligned_cols=39 Identities=28% Similarity=0.531 Sum_probs=20.0
Q ss_pred CccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCC
Q 029203 125 TTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSP 172 (197)
Q Consensus 125 ~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l 172 (197)
..|+.|-.+++... +|.++..|-.. +.....||-|..+|
T Consensus 2 ~~CP~C~~~L~~~~--------~~~~C~~C~~~-~~~~a~CPdC~~~L 40 (70)
T PF07191_consen 2 NTCPKCQQELEWQG--------GHYHCEACQKD-YKKEAFCPDCGQPL 40 (70)
T ss_dssp -B-SSS-SBEEEET--------TEEEETTT--E-EEEEEE-TTT-SB-
T ss_pred CcCCCCCCccEEeC--------CEEECcccccc-ceecccCCCcccHH
Confidence 46888988766543 45555555443 35566799998776
No 253
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.38 E-value=27 Score=23.52 Aligned_cols=50 Identities=22% Similarity=0.521 Sum_probs=31.6
Q ss_pred ccccccccccCCc-ceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCCCCC
Q 029203 126 TCSICLCEYKDLE-MLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTPLS 178 (197)
Q Consensus 126 ~CaICL~~~~~~~-~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~~~ 178 (197)
.|--|=.++-.+. ..++.. =.|-|+.+|... .-+..||-|-..+.-.+..
T Consensus 7 nCECCDrDLpp~s~dA~ICt-fEcTFCadCae~--~l~g~CPnCGGelv~RP~R 57 (84)
T COG3813 7 NCECCDRDLPPDSTDARICT-FECTFCADCAEN--RLHGLCPNCGGELVARPIR 57 (84)
T ss_pred CCcccCCCCCCCCCceeEEE-EeeehhHhHHHH--hhcCcCCCCCchhhcCcCC
Confidence 3444555554333 222322 468999999887 4478999998888655443
No 254
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=42.37 E-value=7.6 Score=24.15 Aligned_cols=11 Identities=36% Similarity=0.984 Sum_probs=5.5
Q ss_pred CCCcccCCCCC
Q 029203 163 GSCPVCRNSPL 173 (197)
Q Consensus 163 ~tCPlCR~~l~ 173 (197)
..||+|..++.
T Consensus 21 ~~CPlC~r~l~ 31 (54)
T PF04423_consen 21 GCCPLCGRPLD 31 (54)
T ss_dssp EE-TTT--EE-
T ss_pred CcCCCCCCCCC
Confidence 38999988764
No 255
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=42.25 E-value=9.7 Score=32.26 Aligned_cols=24 Identities=8% Similarity=-0.061 Sum_probs=14.9
Q ss_pred cccccchhHHHHHHHHHHHHHHHH
Q 029203 11 YLTNIGLGYSIAIALGFLVLLSTV 34 (197)
Q Consensus 11 ~~~~~~~~~~I~i~i~~~vli~~i 34 (197)
....+.|.+++++++|++++.++.
T Consensus 207 ~~~~~~W~iv~g~~~G~~~L~ll~ 230 (278)
T PF06697_consen 207 RKRSWWWKIVVGVVGGVVLLGLLS 230 (278)
T ss_pred CCcceeEEEEEEehHHHHHHHHHH
Confidence 345556666777677777655553
No 256
>PRK11827 hypothetical protein; Provisional
Probab=41.74 E-value=8.5 Score=24.91 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=14.7
Q ss_pred HHHhhCCCCCcccCCCCCC
Q 029203 156 DAWLKLNGSCPVCRNSPLP 174 (197)
Q Consensus 156 ~~Wl~~~~tCPlCR~~l~~ 174 (197)
++||..--.||.|+.++..
T Consensus 2 d~~LLeILaCP~ckg~L~~ 20 (60)
T PRK11827 2 DHRLLEIIACPVCNGKLWY 20 (60)
T ss_pred ChHHHhheECCCCCCcCeE
Confidence 4677777789999998753
No 257
>PLN02436 cellulose synthase A
Probab=41.74 E-value=28 Score=34.88 Aligned_cols=52 Identities=27% Similarity=0.352 Sum_probs=36.2
Q ss_pred CCCCccccccccc---cCCcceeecCCCCCccchhhHHHHh-hCCCCCcccCCCCC
Q 029203 122 NINTTCSICLCEY---KDLEMLRMMPECRHYFHLCCVDAWL-KLNGSCPVCRNSPL 173 (197)
Q Consensus 122 ~~~~~CaICL~~~---~~~~~vr~l~~C~H~FH~~CI~~Wl-~~~~tCPlCR~~l~ 173 (197)
.....|.||-+++ ++|+.-.-...|+--.|+.|.+-=. +.++.||.|+...-
T Consensus 34 ~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 34 LSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred cCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3456999999997 3555544444577779999984422 33568999998764
No 258
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=41.69 E-value=17 Score=22.55 Aligned_cols=23 Identities=26% Similarity=0.702 Sum_probs=13.0
Q ss_pred CCCCccchhhHHHHhhCCCCCccc
Q 029203 145 ECRHYFHLCCVDAWLKLNGSCPVC 168 (197)
Q Consensus 145 ~C~H~FH~~CI~~Wl~~~~tCPlC 168 (197)
.|||-|-..=-+. ......||.|
T Consensus 33 ~Cgh~w~~~v~~R-~~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKASVNDR-TRRGKGCPYC 55 (55)
T ss_pred CCCCeeEccHhhh-ccCCCCCCCC
Confidence 4677665432222 2456679988
No 259
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=41.17 E-value=12 Score=28.75 Aligned_cols=30 Identities=33% Similarity=0.796 Sum_probs=19.6
Q ss_pred CCCccchhhHHHHhhC-----------CCCCcccCCCCCCCCCCCC
Q 029203 146 CRHYFHLCCVDAWLKL-----------NGSCPVCRNSPLPTPLSTP 180 (197)
Q Consensus 146 C~H~FH~~CI~~Wl~~-----------~~tCPlCR~~l~~~~~~~~ 180 (197)
++|.| +.||.. .-+||+|-..-+.+.+..|
T Consensus 10 ~gH~F-----EgWF~ss~~fd~Q~~~glv~CP~Cgs~~V~K~lmAP 50 (148)
T PF06676_consen 10 NGHEF-----EGWFRSSAAFDRQQARGLVSCPVCGSTEVSKALMAP 50 (148)
T ss_pred CCCcc-----ceecCCHHHHHHHHHcCCccCCCCCCCeEeeecCCC
Confidence 57877 789843 2389999776555544433
No 260
>PHA03054 IMV membrane protein; Provisional
Probab=41.03 E-value=63 Score=21.56 Aligned_cols=26 Identities=15% Similarity=-0.106 Sum_probs=12.2
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHH
Q 029203 11 YLTNIGLGYSIAIALGFLVLLSTVLL 36 (197)
Q Consensus 11 ~~~~~~~~~~I~i~i~~~vli~~i~l 36 (197)
......+.++|+++++++++++.+++
T Consensus 43 ~~~~~~~~~ii~l~~v~~~~l~~flY 68 (72)
T PHA03054 43 TGCWGWYWLIIIFFIVLILLLLIYLY 68 (72)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444455555555554443
No 261
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=40.88 E-value=11 Score=26.72 Aligned_cols=21 Identities=24% Similarity=0.085 Sum_probs=10.8
Q ss_pred ccccchhHHHHHHHHHHHHHH
Q 029203 12 LTNIGLGYSIAIALGFLVLLS 32 (197)
Q Consensus 12 ~~~~~~~~~I~i~i~~~vli~ 32 (197)
.+....++.|++++++.+|+.
T Consensus 64 s~gaiagi~vg~~~~v~~lv~ 84 (96)
T PTZ00382 64 STGAIAGISVAVVAVVGGLVG 84 (96)
T ss_pred ccccEEEEEeehhhHHHHHHH
Confidence 344455666665555544444
No 262
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=40.54 E-value=1.2e+02 Score=21.05 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 029203 20 SIAIALGFLVLLS 32 (197)
Q Consensus 20 ~I~i~i~~~vli~ 32 (197)
..++.++++|++.
T Consensus 41 ~FWv~LA~FV~~l 53 (90)
T PF15183_consen 41 AFWVSLAAFVVFL 53 (90)
T ss_pred hHHHHHHHHHHHH
Confidence 3344444444333
No 263
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=40.32 E-value=32 Score=22.17 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=25.6
Q ss_pred CCCccccccccccC--CcceeecCCCCCccchhhHHH
Q 029203 123 INTTCSICLCEYKD--LEMLRMMPECRHYFHLCCVDA 157 (197)
Q Consensus 123 ~~~~CaICL~~~~~--~~~vr~l~~C~H~FH~~CI~~ 157 (197)
....|+.|-..... ...+...+.||+.+|.+---.
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~naA 63 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNAA 63 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCEECcHHHHH
Confidence 56789999888777 445666667899888875443
No 264
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.00 E-value=27 Score=24.72 Aligned_cols=35 Identities=11% Similarity=0.249 Sum_probs=28.4
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhh
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLK 160 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~ 160 (197)
...|+||-..+..|++...++ .--.|.+|+..=..
T Consensus 6 ewkC~VCg~~iieGqkFTF~~--kGsVH~eCl~~s~~ 40 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK--KGSVHYECLAESKR 40 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee--CCcchHHHHHHHHh
Confidence 568999999999999888876 44559999987543
No 265
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=39.93 E-value=15 Score=26.94 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=29.9
Q ss_pred CCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhheeccccC
Q 029203 6 TPSPNYLTNIGLGYSIAIALGFLVLLSTVLLASYICCRRNNS 47 (197)
Q Consensus 6 ~~s~~~~~~~~~~~~I~i~i~~~vli~~i~l~~~~~~~~~~~ 47 (197)
+|.++....+.++..|+-+.++++...-...++.-|+||.-+
T Consensus 75 sp~ps~p~d~aLp~VIGGLcaL~LaamGA~~LLrR~cRr~ar 116 (126)
T PF03229_consen 75 SPGPSPPVDFALPLVIGGLCALTLAAMGAGALLRRCCRRAAR 116 (126)
T ss_pred CCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566777888888888888777777777776666654
No 266
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=39.82 E-value=21 Score=33.35 Aligned_cols=36 Identities=17% Similarity=0.413 Sum_probs=25.3
Q ss_pred CCCCccccccccccC-----Cc------ceeecCCCCCccchhhHHHHh
Q 029203 122 NINTTCSICLCEYKD-----LE------MLRMMPECRHYFHLCCVDAWL 159 (197)
Q Consensus 122 ~~~~~CaICL~~~~~-----~~------~vr~l~~C~H~FH~~CI~~Wl 159 (197)
+....|+||-|.|+. .+ .|.+ . =|-+||..|+..-.
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~l-e-~G~ifH~~Cl~e~~ 557 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYL-E-FGRIFHSKCLSEKR 557 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeee-c-cCceeeccccchHH
Confidence 557899999999952 11 2332 2 58899999997643
No 267
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=39.65 E-value=68 Score=26.25 Aligned_cols=12 Identities=0% Similarity=-0.357 Sum_probs=4.6
Q ss_pred chhHHHHHHHHH
Q 029203 16 GLGYSIAIALGF 27 (197)
Q Consensus 16 ~~~~~I~i~i~~ 27 (197)
.++.++-+++++
T Consensus 64 s~~~l~qmi~aL 75 (219)
T PRK13415 64 SAFDFVKLIGAT 75 (219)
T ss_pred cHHHHHHHHHHH
Confidence 333334333333
No 268
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=39.53 E-value=45 Score=23.07 Aligned_cols=20 Identities=35% Similarity=0.303 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029203 19 YSIAIALGFLVLLSTVLLAS 38 (197)
Q Consensus 19 ~~I~i~i~~~vli~~i~l~~ 38 (197)
+.|.|++=+.+.++++++++
T Consensus 36 ysIVI~FWv~LA~FV~~lF~ 55 (90)
T PF15183_consen 36 YSIVIAFWVSLAAFVVFLFL 55 (90)
T ss_pred eeeehhHHHHHHHHHHHHHH
Confidence 34544444444344444333
No 269
>PHA02692 hypothetical protein; Provisional
Probab=39.32 E-value=73 Score=21.21 Aligned_cols=25 Identities=8% Similarity=-0.097 Sum_probs=10.6
Q ss_pred cccccchhHHHHHHHHHHHHHHHHH
Q 029203 11 YLTNIGLGYSIAIALGFLVLLSTVL 35 (197)
Q Consensus 11 ~~~~~~~~~~I~i~i~~~vli~~i~ 35 (197)
....+.+.++++++++++++++.++
T Consensus 41 ~~~~~~~~ii~~~~~~~~~vll~fl 65 (70)
T PHA02692 41 KGVPWTTVFLIGLIAAAIGVLLCFH 65 (70)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444524444444444333
No 270
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=39.12 E-value=71 Score=29.21 Aligned_cols=25 Identities=32% Similarity=0.479 Sum_probs=13.1
Q ss_pred HHHHHHH-HHHHHHHhheeccccCCC
Q 029203 25 LGFLVLL-STVLLASYICCRRNNSSH 49 (197)
Q Consensus 25 i~~~vli-~~i~l~~~~~~~~~~~~~ 49 (197)
+++++.+ +.+++.+|+|++++++.+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (513)
T KOG2052|consen 138 LGPVVFLLLIAILTVLGCFYRKRRYH 163 (513)
T ss_pred HHHHHHHHHHHHHHHheeeeeeecch
Confidence 3433333 344455567777666543
No 271
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=38.90 E-value=14 Score=35.26 Aligned_cols=37 Identities=30% Similarity=0.590 Sum_probs=28.0
Q ss_pred CCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCC
Q 029203 136 DLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSP 172 (197)
Q Consensus 136 ~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l 172 (197)
+.-.+...|.|.-.||.+=.+.-..++..||.||.+-
T Consensus 1040 Pd~~it~Cp~C~~~F~~eDFEl~vLqKGHCPFCrTS~ 1076 (1081)
T KOG1538|consen 1040 PDASITMCPSCFQMFHSEDFELLVLQKGHCPFCRTSK 1076 (1081)
T ss_pred CcchhhhCchHHhhhccchhhHHHHhcCCCCcccccc
Confidence 3334556667888888887777777889999999865
No 272
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=38.67 E-value=65 Score=23.56 Aligned_cols=31 Identities=23% Similarity=0.077 Sum_probs=14.4
Q ss_pred CCCCcccccchhHHHHHHHHHHHHHHHHHHH
Q 029203 7 PSPNYLTNIGLGYSIAIALGFLVLLSTVLLA 37 (197)
Q Consensus 7 ~s~~~~~~~~~~~~I~i~i~~~vli~~i~l~ 37 (197)
.++++.-..-|.-.|++++..+.+++++++.
T Consensus 54 ~sg~g~~~lffvglii~LivSLaLVsFvIFL 84 (128)
T PF15145_consen 54 NSGNGSRSLFFVGLIIVLIVSLALVSFVIFL 84 (128)
T ss_pred CCCCCceeehHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444454444444444444445544433
No 273
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=38.33 E-value=17 Score=28.44 Aligned_cols=24 Identities=21% Similarity=0.599 Sum_probs=14.6
Q ss_pred eeecCCCCCccchhhHHHHhhCCCCCcccCC
Q 029203 140 LRMMPECRHYFHLCCVDAWLKLNGSCPVCRN 170 (197)
Q Consensus 140 vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~ 170 (197)
+.+.+.|||++= + ..-..||+|.+
T Consensus 134 ~~vC~vCGy~~~----g---e~P~~CPiCga 157 (166)
T COG1592 134 VWVCPVCGYTHE----G---EAPEVCPICGA 157 (166)
T ss_pred EEEcCCCCCccc----C---CCCCcCCCCCC
Confidence 555556888741 1 22348999975
No 274
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=38.20 E-value=46 Score=29.87 Aligned_cols=16 Identities=13% Similarity=0.349 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHHHHH
Q 029203 17 LGYSIAIALGFLVLLS 32 (197)
Q Consensus 17 ~~~~I~i~i~~~vli~ 32 (197)
.|++|+++++++++.+
T Consensus 68 agFfvaflvslVL~~l 83 (429)
T PF12297_consen 68 AGFFVAFLVSLVLTWL 83 (429)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555444333
No 275
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=37.69 E-value=33 Score=32.46 Aligned_cols=6 Identities=17% Similarity=0.019 Sum_probs=2.8
Q ss_pred cchhhH
Q 029203 150 FHLCCV 155 (197)
Q Consensus 150 FH~~CI 155 (197)
+|.+.+
T Consensus 447 ehvdr~ 452 (684)
T PF12877_consen 447 EHVDRL 452 (684)
T ss_pred hhhhhh
Confidence 454444
No 276
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=37.28 E-value=52 Score=17.95 Aligned_cols=16 Identities=13% Similarity=0.222 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 029203 22 AIALGFLVLLSTVLLA 37 (197)
Q Consensus 22 ~i~i~~~vli~~i~l~ 37 (197)
.++.|+++.+.++.+.
T Consensus 4 ~vi~G~ilv~lLlgYL 19 (29)
T PRK14748 4 GVITGVLLVFLLLGYL 19 (29)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444433333333
No 277
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=37.04 E-value=44 Score=32.58 Aligned_cols=28 Identities=18% Similarity=0.510 Sum_probs=17.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhe
Q 029203 14 NIGLGYSIAIALGFLVLLSTVLLASYIC 41 (197)
Q Consensus 14 ~~~~~~~I~i~i~~~vli~~i~l~~~~~ 41 (197)
..-+++++.+++|+++++++-++.+.||
T Consensus 88 ~~~~g~~v~~~i~ll~~il~P~vg~~fC 115 (806)
T PF05478_consen 88 AYEWGFLVCAVIGLLFIILMPLVGLCFC 115 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446777777777776666544444444
No 278
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=36.60 E-value=22 Score=25.84 Aligned_cols=47 Identities=23% Similarity=0.352 Sum_probs=27.7
Q ss_pred CCCccccccccccCCc-ceeecCCCCCccchhhHHHHhhCCC--CCcccCC
Q 029203 123 INTTCSICLCEYKDLE-MLRMMPECRHYFHLCCVDAWLKLNG--SCPVCRN 170 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~-~vr~l~~C~H~FH~~CI~~Wl~~~~--tCPlCR~ 170 (197)
....|++|...|.--. .-.....|+|.+|..|-.. ..... .|-+|..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 5679999999874221 1234446999999998654 11111 4777743
No 279
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=36.06 E-value=26 Score=32.60 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHhhee
Q 029203 26 GFLVLLSTVLLASYICC 42 (197)
Q Consensus 26 ~~~vli~~i~l~~~~~~ 42 (197)
++++++++++++.|+..
T Consensus 8 ~i~ii~i~~~~~~~~~r 24 (569)
T PRK04778 8 AIVVIIIIAYLAGLILR 24 (569)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333334443
No 280
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=35.63 E-value=23 Score=25.05 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=6.7
Q ss_pred chhHHHHHHHHHHHHHH
Q 029203 16 GLGYSIAIALGFLVLLS 32 (197)
Q Consensus 16 ~~~~~I~i~i~~~vli~ 32 (197)
.|.|+.+- .|++++++
T Consensus 41 yWpyLA~G-GG~iLilI 56 (98)
T PF07204_consen 41 YWPYLAAG-GGLILILI 56 (98)
T ss_pred hhHHhhcc-chhhhHHH
Confidence 34443333 34444333
No 281
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=35.49 E-value=29 Score=26.23 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=11.0
Q ss_pred CCCcccCCCCCCCC
Q 029203 163 GSCPVCRNSPLPTP 176 (197)
Q Consensus 163 ~tCPlCR~~l~~~~ 176 (197)
..||.|...|....
T Consensus 124 f~Cp~Cg~~l~~~d 137 (147)
T smart00531 124 FTCPRCGEELEEDD 137 (147)
T ss_pred EECCCCCCEEEEcC
Confidence 68999999886543
No 282
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=35.33 E-value=56 Score=24.96 Aligned_cols=23 Identities=35% Similarity=0.467 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 029203 17 LGYSIAIALGFLVLLSTVLLASY 39 (197)
Q Consensus 17 ~~~~I~i~i~~~vli~~i~l~~~ 39 (197)
|+.+++-++.|+++++++..++|
T Consensus 8 ~~~~~~~~inflil~~lL~~fl~ 30 (164)
T PRK14473 8 LGLLIAQLINFLLLIFLLRTFLY 30 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555554444443
No 283
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=35.18 E-value=31 Score=29.06 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=33.2
Q ss_pred CCCCCccccccccccCCcceeecCCC-CCccchhhHHHHh-hCCCCCcccCCCCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPEC-RHYFHLCCVDAWL-KLNGSCPVCRNSPLPTP 176 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C-~H~FH~~CI~~Wl-~~~~tCPlCR~~l~~~~ 176 (197)
.+.-.-|.||++-..+|..-.-|..- .=.=|++|+.+|= -.++.|| |+.+..++
T Consensus 27 ~~tLsfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~p--rsk~skSt 82 (285)
T PF06937_consen 27 TETLSFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCP--RSKLSKST 82 (285)
T ss_pred ccceeecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCC--ccccccch
Confidence 44567899998887666432211101 1134899999995 5577898 55554443
No 284
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=35.13 E-value=22 Score=27.30 Aligned_cols=16 Identities=31% Similarity=0.476 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 029203 23 IALGFLVLLSTVLLAS 38 (197)
Q Consensus 23 i~i~~~vli~~i~l~~ 38 (197)
+++|++++++++++.+
T Consensus 12 i~igi~Ll~lLl~cgi 27 (158)
T PF11770_consen 12 ISIGISLLLLLLLCGI 27 (158)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3344444333333333
No 285
>PF14927 Neurensin: Neurensin
Probab=34.61 E-value=83 Score=23.91 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=14.9
Q ss_pred CCCCcccccchhHHHHHHHHHHHHHHHHHHHHhh
Q 029203 7 PSPNYLTNIGLGYSIAIALGFLVLLSTVLLASYI 40 (197)
Q Consensus 7 ~s~~~~~~~~~~~~I~i~i~~~vli~~i~l~~~~ 40 (197)
+++..++...|.+.+++.+.++++-.+++.+-|.
T Consensus 34 ~~~~~w~s~~wkV~~i~g~l~Ll~Gi~~l~vgY~ 67 (140)
T PF14927_consen 34 PSPSRWSSVCWKVGFISGLLLLLLGIVALTVGYL 67 (140)
T ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444555555554444333333333333344443
No 286
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=34.36 E-value=57 Score=27.16 Aligned_cols=12 Identities=25% Similarity=0.518 Sum_probs=8.2
Q ss_pred HHHHhhCCCCCc
Q 029203 155 VDAWLKLNGSCP 166 (197)
Q Consensus 155 I~~Wl~~~~tCP 166 (197)
.+.|++...+=|
T Consensus 216 f~~W~~~~~~~~ 227 (247)
T COG1622 216 FDAWVAEVKAAA 227 (247)
T ss_pred HHHHHHhhhhcc
Confidence 788997655444
No 287
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=34.26 E-value=45 Score=33.52 Aligned_cols=52 Identities=23% Similarity=0.295 Sum_probs=35.1
Q ss_pred CCCCcccccccccc---CCcceeecCCCCCccchhhHHHHh-hCCCCCcccCCCCC
Q 029203 122 NINTTCSICLCEYK---DLEMLRMMPECRHYFHLCCVDAWL-KLNGSCPVCRNSPL 173 (197)
Q Consensus 122 ~~~~~CaICL~~~~---~~~~vr~l~~C~H~FH~~CI~~Wl-~~~~tCPlCR~~l~ 173 (197)
.+...|.||=+++. +|+.-.-...|+--.|+.|-+==. +.++.||.|+...-
T Consensus 15 ~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 15 GGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred cCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 34569999988874 444443333477779999984322 34568999988763
No 288
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=34.21 E-value=9.4 Score=23.69 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=10.0
Q ss_pred CCccccccccccCC
Q 029203 124 NTTCSICLCEYKDL 137 (197)
Q Consensus 124 ~~~CaICL~~~~~~ 137 (197)
.+.|+.|-++|...
T Consensus 2 ~f~CP~C~~~~~~~ 15 (54)
T PF05605_consen 2 SFTCPYCGKGFSES 15 (54)
T ss_pred CcCCCCCCCccCHH
Confidence 46899998865554
No 289
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=34.19 E-value=73 Score=24.66 Aligned_cols=22 Identities=18% Similarity=0.233 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 029203 17 LGYSIAIALGFLVLLSTVLLAS 38 (197)
Q Consensus 17 ~~~~I~i~i~~~vli~~i~l~~ 38 (197)
++.+++.++.|+++++++..++
T Consensus 18 ~~~~~~~~i~Flil~~lL~~~l 39 (175)
T PRK14472 18 PGLIFWTAVTFVIVLLILKKIA 39 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555555555443333
No 290
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=34.15 E-value=21 Score=32.66 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=10.1
Q ss_pred CCccccccccccCCc
Q 029203 124 NTTCSICLCEYKDLE 138 (197)
Q Consensus 124 ~~~CaICL~~~~~~~ 138 (197)
-.-|+-||+++-..+
T Consensus 26 ~~yCp~CL~~~p~~e 40 (483)
T PF05502_consen 26 SYYCPNCLFEVPSSE 40 (483)
T ss_pred eeECccccccCChhh
Confidence 457888888876543
No 291
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=34.13 E-value=46 Score=20.52 Aligned_cols=12 Identities=17% Similarity=0.138 Sum_probs=5.8
Q ss_pred chhHHHHHHHHH
Q 029203 16 GLGYSIAIALGF 27 (197)
Q Consensus 16 ~~~~~I~i~i~~ 27 (197)
.|.|++.|++.+
T Consensus 4 awywivli~lv~ 15 (54)
T PF13260_consen 4 AWYWIVLIVLVV 15 (54)
T ss_pred HHHHHHHHHHHH
Confidence 455555544433
No 292
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=34.12 E-value=30 Score=23.41 Aligned_cols=33 Identities=27% Similarity=0.490 Sum_probs=21.9
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHH
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDA 157 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~ 157 (197)
...|.+|-...-..-.... ++|.-.||..|...
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~-~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSH-PGCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCCCCeEEEEeC-CCCCcEEChHHHcc
Confidence 5699999866222212223 35999999999765
No 293
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=33.06 E-value=59 Score=24.83 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 029203 17 LGYSIAIALGFLVLLSTVLLASY 39 (197)
Q Consensus 17 ~~~~I~i~i~~~vli~~i~l~~~ 39 (197)
|+.+++.++.|+++++++..++|
T Consensus 8 ~~~~~~~~i~Flil~~ll~~~l~ 30 (164)
T PRK14471 8 FGLFFWQTILFLILLLLLAKFAW 30 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 45555666666665554444433
No 294
>PHA03283 envelope glycoprotein E; Provisional
Probab=32.98 E-value=74 Score=29.43 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=8.1
Q ss_pred HHHHHHHHhheecccc
Q 029203 31 LSTVLLASYICCRRNN 46 (197)
Q Consensus 31 i~~i~l~~~~~~~~~~ 46 (197)
+.++.++++.|.+.++
T Consensus 412 ~~~~~l~vw~c~~~r~ 427 (542)
T PHA03283 412 ALLVALVVWGCILYRR 427 (542)
T ss_pred HHHHHHhhhheeeehh
Confidence 3445555555665433
No 295
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=32.91 E-value=14 Score=32.76 Aligned_cols=51 Identities=22% Similarity=0.464 Sum_probs=0.0
Q ss_pred CCCcccccccccc--------------CC--cceeecCCCCCccchhhHHHHhhC---------CCCCcccCCCCCC
Q 029203 123 INTTCSICLCEYK--------------DL--EMLRMMPECRHYFHLCCVDAWLKL---------NGSCPVCRNSPLP 174 (197)
Q Consensus 123 ~~~~CaICL~~~~--------------~~--~~vr~l~~C~H~FH~~CI~~Wl~~---------~~tCPlCR~~l~~ 174 (197)
...+|++|+..-. +. -....-| |||+--.....-|-+. +..||.|-..|..
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 3789999996521 00 1334566 9999888888889743 3479999877753
No 296
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=32.76 E-value=30 Score=18.70 Aligned_cols=29 Identities=21% Similarity=0.548 Sum_probs=17.7
Q ss_pred ccccccccccCCcceeecCCCCCccchhhH
Q 029203 126 TCSICLCEYKDLEMLRMMPECRHYFHLCCV 155 (197)
Q Consensus 126 ~CaICL~~~~~~~~vr~l~~C~H~FH~~CI 155 (197)
.|.||-.+..... ...-..|...+|..|+
T Consensus 2 ~C~~C~~~~~~~~-~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-FYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCE-eEEeCCCCCeEcCccC
Confidence 5888866655443 3333447777787773
No 297
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.58 E-value=16 Score=32.93 Aligned_cols=40 Identities=15% Similarity=0.321 Sum_probs=28.8
Q ss_pred CCCccccccccccCCccee----ecCCCCCccchhhHHHHhhCC
Q 029203 123 INTTCSICLCEYKDLEMLR----MMPECRHYFHLCCVDAWLKLN 162 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr----~l~~C~H~FH~~CI~~Wl~~~ 162 (197)
+...|+.|....+.....- ...+|.|.||..|+..|-...
T Consensus 225 ntk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h~ 268 (444)
T KOG1815|consen 225 NTKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDHG 268 (444)
T ss_pred cCccCCCcccchhccCCccccccccCCcCCeeceeeeccccccc
Confidence 3456999999988776221 112399999999988887653
No 298
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=32.46 E-value=52 Score=31.97 Aligned_cols=39 Identities=26% Similarity=0.194 Sum_probs=20.7
Q ss_pred CCCcccccchhHHHHHHHHHHHHHHHHHHHHhheecccc
Q 029203 8 SPNYLTNIGLGYSIAIALGFLVLLSTVLLASYICCRRNN 46 (197)
Q Consensus 8 s~~~~~~~~~~~~I~i~i~~~vli~~i~l~~~~~~~~~~ 46 (197)
...|-|.+..++.-++++.++++++++++..+-++.+.+
T Consensus 267 i~~YHT~fLl~ILG~~~livl~lL~vLl~yCrrkc~~~r 305 (807)
T PF10577_consen 267 ITTYHTVFLLAILGGTALIVLILLCVLLCYCRRKCLKPR 305 (807)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcc
Confidence 334455555555555555555666666665555333333
No 299
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=32.11 E-value=6.9 Score=33.11 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=22.2
Q ss_pred CCCCccccccccccCCcceeecC--CCCCccchhhHHHHhhCCCCCcccCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMP--ECRHYFHLCCVDAWLKLNGSCPVCRN 170 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~--~C~H~FH~~CI~~Wl~~~~tCPlCR~ 170 (197)
.....|+||=..-.-. .++.-. +-.|.+|.-|-..|--.+..||.|-.
T Consensus 170 w~~g~CPvCGs~P~~s-~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLS-VLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp TT-SS-TTT---EEEE-EEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred ccCCcCCCCCCcCceE-EEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 3457999996653221 111111 13577788999999888889999944
No 300
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=31.78 E-value=14 Score=32.46 Aligned_cols=8 Identities=38% Similarity=0.584 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 029203 25 LGFLVLLS 32 (197)
Q Consensus 25 i~~~vli~ 32 (197)
.+.+|+++
T Consensus 304 ~~~~vli~ 311 (361)
T PF12259_consen 304 CGAIVLII 311 (361)
T ss_pred hHHHHHHH
Confidence 33333333
No 301
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=31.45 E-value=49 Score=20.47 Aligned_cols=38 Identities=29% Similarity=0.474 Sum_probs=19.3
Q ss_pred ccccccccccCC--cceeecCCCCCccchhhHHHHhhCCCCCcccCC
Q 029203 126 TCSICLCEYKDL--EMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRN 170 (197)
Q Consensus 126 ~CaICL~~~~~~--~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~ 170 (197)
.|.+|...|.+. +.-.-.+ =|-.|-. |-...+||+|.+
T Consensus 3 ~C~~CgyiYd~~~Gd~~~~i~-pGt~f~~------Lp~~w~CP~C~a 42 (50)
T cd00730 3 ECRICGYIYDPAEGDPDEGIP-PGTPFED------LPDDWVCPVCGA 42 (50)
T ss_pred CCCCCCeEECCCCCCcccCcC-CCCCHhH------CCCCCCCCCCCC
Confidence 577887777643 2221211 1222210 334558999975
No 302
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=31.28 E-value=66 Score=19.23 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhe
Q 029203 17 LGYSIAIALGFLVLLSTVLLASYIC 41 (197)
Q Consensus 17 ~~~~I~i~i~~~vli~~i~l~~~~~ 41 (197)
-+.+|+.+-|+.+++.+++++..+.
T Consensus 4 y~~yVW~sYg~t~l~l~~li~~~~~ 28 (45)
T TIGR03141 4 YAFYVWLAYGITALVLAGLILWSLL 28 (45)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666655444444443333
No 303
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.66 E-value=8.8 Score=32.32 Aligned_cols=48 Identities=25% Similarity=0.483 Sum_probs=36.0
Q ss_pred CCccccccccccCCc--ce-eecCC-------CCCccchhhHHHHhhCC-CCCcccCCC
Q 029203 124 NTTCSICLCEYKDLE--ML-RMMPE-------CRHYFHLCCVDAWLKLN-GSCPVCRNS 171 (197)
Q Consensus 124 ~~~CaICL~~~~~~~--~v-r~l~~-------C~H~FH~~CI~~Wl~~~-~tCPlCR~~ 171 (197)
...|.||...|...+ .+ +++.. |+|-.+..|++.-+... ..||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 467999999999432 22 22222 99999999999987554 589999875
No 304
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.30 E-value=25 Score=24.69 Aligned_cols=13 Identities=23% Similarity=0.649 Sum_probs=11.3
Q ss_pred ccchhhHHHHhhC
Q 029203 149 YFHLCCVDAWLKL 161 (197)
Q Consensus 149 ~FH~~CI~~Wl~~ 161 (197)
-||..|+..|+..
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999953
No 305
>PF15106 TMEM156: TMEM156 protein family
Probab=30.07 E-value=39 Score=27.51 Aligned_cols=12 Identities=17% Similarity=0.506 Sum_probs=4.9
Q ss_pred hhHHHHHHHHHH
Q 029203 17 LGYSIAIALGFL 28 (197)
Q Consensus 17 ~~~~I~i~i~~~ 28 (197)
..|++.+++.|+
T Consensus 176 ITWYvLVllVfi 187 (226)
T PF15106_consen 176 ITWYVLVLLVFI 187 (226)
T ss_pred hHHHHHHHHHHH
Confidence 444444433333
No 306
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=30.07 E-value=73 Score=19.08 Aligned_cols=21 Identities=19% Similarity=0.350 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 029203 17 LGYSIAIALGFLVLLSTVLLA 37 (197)
Q Consensus 17 ~~~~I~i~i~~~vli~~i~l~ 37 (197)
-+++++.+-++.+++++.+++
T Consensus 3 y~~yVW~sYg~t~~~l~~l~~ 23 (46)
T PF04995_consen 3 YGFYVWSSYGVTALVLAGLIV 23 (46)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 345566655555544433333
No 307
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=29.91 E-value=38 Score=27.65 Aligned_cols=15 Identities=20% Similarity=0.184 Sum_probs=7.6
Q ss_pred cchhHHHHHHHHHHH
Q 029203 15 IGLGYSIAIALGFLV 29 (197)
Q Consensus 15 ~~~~~~I~i~i~~~v 29 (197)
..+-+.|+|++.+++
T Consensus 14 ~iLNiaI~IV~lLIi 28 (217)
T PF07423_consen 14 KILNIAIGIVSLLII 28 (217)
T ss_pred hhHHHHHHHHHHHHH
Confidence 344555666554444
No 308
>PF15353 HECA: Headcase protein family homologue
Probab=29.63 E-value=33 Score=24.81 Aligned_cols=14 Identities=29% Similarity=0.831 Sum_probs=12.6
Q ss_pred CCCccchhhHHHHh
Q 029203 146 CRHYFHLCCVDAWL 159 (197)
Q Consensus 146 C~H~FH~~CI~~Wl 159 (197)
.++..|.+|++.|=
T Consensus 40 ~~~~MH~~CF~~wE 53 (107)
T PF15353_consen 40 FGQYMHRECFEKWE 53 (107)
T ss_pred CCCchHHHHHHHHH
Confidence 58999999999994
No 309
>PF11755 DUF3311: Protein of unknown function (DUF3311); InterPro: IPR021741 This is a family of short bacterial proteins of unknwon function.
Probab=29.54 E-value=1.3e+02 Score=19.50 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=15.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhe
Q 029203 14 NIGLGYSIAIALGFLVLLSTVLLASYIC 41 (197)
Q Consensus 14 ~~~~~~~I~i~i~~~vli~~i~l~~~~~ 41 (197)
-.|++++.+-.++.+++-++++.++|..
T Consensus 25 v~G~Pff~~w~~~wv~lts~~~~~~y~l 52 (66)
T PF11755_consen 25 VFGMPFFYWWQLAWVVLTSVCMAIVYRL 52 (66)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666655555555555555555544
No 310
>PF00974 Rhabdo_glycop: Rhabdovirus spike glycoprotein; InterPro: IPR001903 Different families of ssRNA negative-strand viruses contain glycoproteins responsible for forming spikes on the surface of the virion. The glycoprotein spike is made up of a trimer of glycoproteins. These proteins are frequently abbreviated to G protein. Channel formed by glycoprotein spike is thought to function in a similar manner to Influenza virus M2 protein channel, thus allowing a signal to pass across the viral membrane to signal for viral uncoating [, ].; GO: 0019031 viral envelope; PDB: 2CMZ_C 2J6J_A 3EGD_D.
Probab=29.42 E-value=18 Score=33.26 Aligned_cols=7 Identities=29% Similarity=0.373 Sum_probs=0.0
Q ss_pred hhHHHHH
Q 029203 17 LGYSIAI 23 (197)
Q Consensus 17 ~~~~I~i 23 (197)
|+..+.+
T Consensus 451 W~~~~~~ 457 (501)
T PF00974_consen 451 WGEWLSI 457 (501)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 3333333
No 311
>PF09472 MtrF: Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF); InterPro: IPR013347 Many archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This domain is mostly found in MtrF, where it covers the entire length of the protein. This polypeptide is one of eight subunits of the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase complex found in methanogenic archaea. This is a membrane-associated enzyme complex that uses methyl-transfer reactions to drive a sodium-ion pump []. MtrF itself is involved in the transfer of the methyl group from N5-methyltetrahydromethanopterin to coenzyme M. Subsequently, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the C-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016020 membrane
Probab=29.37 E-value=76 Score=20.78 Aligned_cols=9 Identities=22% Similarity=0.726 Sum_probs=3.4
Q ss_pred hHHHHHHHH
Q 029203 18 GYSIAIALG 26 (197)
Q Consensus 18 ~~~I~i~i~ 26 (197)
|+.++++++
T Consensus 44 GfaiG~~~A 52 (64)
T PF09472_consen 44 GFAIGFLFA 52 (64)
T ss_pred HHHHHHHHH
Confidence 333333333
No 312
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=29.36 E-value=1.1e+02 Score=21.32 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=16.6
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHh
Q 029203 12 LTNIGLGYSIAIALGFLVLLSTVLLASY 39 (197)
Q Consensus 12 ~~~~~~~~~I~i~i~~~vli~~i~l~~~ 39 (197)
.+.+-..-++++++|++.++-++++..|
T Consensus 42 ~~~wRalSii~FIlG~vl~lGilifs~y 69 (91)
T PHA02680 42 DYVWRALSVTCFIVGAVLLLGLFVFSMY 69 (91)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455577777777776665444444
No 313
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=29.18 E-value=42 Score=24.06 Aligned_cols=32 Identities=16% Similarity=0.273 Sum_probs=26.8
Q ss_pred ccccccccccCCcceeecCCCCCccchhhHHHHh
Q 029203 126 TCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWL 159 (197)
Q Consensus 126 ~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl 159 (197)
.|.||=.++..|+....+.+ -..|.+|+..=.
T Consensus 4 kC~iCg~~I~~gqlFTF~~k--G~VH~~C~~~~~ 35 (101)
T PF09943_consen 4 KCYICGKPIYEGQLFTFTKK--GPVHYECFREKA 35 (101)
T ss_pred EEEecCCeeeecceEEEecC--CcEeHHHHHHHH
Confidence 69999999999998888874 566999997744
No 314
>PF15102 TMEM154: TMEM154 protein family
Probab=29.11 E-value=14 Score=28.22 Aligned_cols=25 Identities=24% Similarity=0.285 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHhheeccccC
Q 029203 23 IALGFLVLLSTVLLASYICCRRNNS 47 (197)
Q Consensus 23 i~i~~~vli~~i~l~~~~~~~~~~~ 47 (197)
|++++++++.+++++.|-.+|.+..
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~K~~ 90 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRTKQE 90 (146)
T ss_pred HHHHHHHHHHHHheeEEeecccCCC
Confidence 4444444444555555555555553
No 315
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=29.06 E-value=1e+02 Score=18.71 Aligned_cols=8 Identities=50% Similarity=0.841 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 029203 20 SIAIALGF 27 (197)
Q Consensus 20 ~I~i~i~~ 27 (197)
.+.|++++
T Consensus 10 svvIil~I 17 (49)
T PF11044_consen 10 SVVIILGI 17 (49)
T ss_pred HHHHHHHH
Confidence 33333333
No 316
>PLN02195 cellulose synthase A
Probab=29.03 E-value=67 Score=32.02 Aligned_cols=53 Identities=17% Similarity=0.249 Sum_probs=35.8
Q ss_pred CCCCCcccccccccc---CCcceeecCCCCCccchhhHHHHh-hCCCCCcccCCCCC
Q 029203 121 NNINTTCSICLCEYK---DLEMLRMMPECRHYFHLCCVDAWL-KLNGSCPVCRNSPL 173 (197)
Q Consensus 121 ~~~~~~CaICL~~~~---~~~~vr~l~~C~H~FH~~CI~~Wl-~~~~tCPlCR~~l~ 173 (197)
+.....|.||=+++. +|+.-.-...|+--.|+.|-+-=- +.++.||.|+...-
T Consensus 3 ~~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 3 ESGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cCCCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 345679999988774 444444444588889999984322 23568999988765
No 317
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=29.03 E-value=74 Score=23.87 Aligned_cols=6 Identities=33% Similarity=0.966 Sum_probs=2.6
Q ss_pred HHHhhC
Q 029203 156 DAWLKL 161 (197)
Q Consensus 156 ~~Wl~~ 161 (197)
..|++.
T Consensus 140 ~~Wi~~ 145 (146)
T PF14316_consen 140 RRWIKH 145 (146)
T ss_pred HHHHhc
Confidence 344443
No 318
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=28.56 E-value=20 Score=20.59 Aligned_cols=28 Identities=25% Similarity=0.651 Sum_probs=16.3
Q ss_pred cCCCCCccchhhHHHHhhCCCCCcccCCCC
Q 029203 143 MPECRHYFHLCCVDAWLKLNGSCPVCRNSP 172 (197)
Q Consensus 143 l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l 172 (197)
.++||++||..=--+ +....|..|...|
T Consensus 4 C~~Cg~~Yh~~~~pP--~~~~~Cd~cg~~L 31 (36)
T PF05191_consen 4 CPKCGRIYHIEFNPP--KVEGVCDNCGGEL 31 (36)
T ss_dssp ETTTTEEEETTTB----SSTTBCTTTTEBE
T ss_pred cCCCCCccccccCCC--CCCCccCCCCCee
Confidence 346999999532111 3345788886654
No 319
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=28.54 E-value=1.1e+02 Score=20.81 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 029203 20 SIAIALGFLVLLSTVLLASY 39 (197)
Q Consensus 20 ~I~i~i~~~vli~~i~l~~~ 39 (197)
...++.+++++++.+..++|
T Consensus 51 v~l~l~ail~lL~a~Ya~fy 70 (79)
T PF15168_consen 51 VALVLAAILVLLLAFYAFFY 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444444
No 320
>PF15179 Myc_target_1: Myc target protein 1
Probab=28.46 E-value=84 Score=25.06 Aligned_cols=13 Identities=15% Similarity=0.161 Sum_probs=5.8
Q ss_pred HHHHHhheecccc
Q 029203 34 VLLASYICCRRNN 46 (197)
Q Consensus 34 i~l~~~~~~~~~~ 46 (197)
++.+++.|..|+|
T Consensus 38 li~~LltwlSRRR 50 (197)
T PF15179_consen 38 LIWALLTWLSRRR 50 (197)
T ss_pred HHHHHHHHHHhcc
Confidence 3344444544444
No 321
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=28.46 E-value=71 Score=22.63 Aligned_cols=15 Identities=13% Similarity=0.439 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 029203 21 IAIALGFLVLLSTVL 35 (197)
Q Consensus 21 I~i~i~~~vli~~i~ 35 (197)
++|+++++++++++.
T Consensus 52 ~GIli~f~i~f~~~~ 66 (103)
T PF06422_consen 52 FGILIAFWIFFIVLT 66 (103)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444433333
No 322
>PF09777 OSTMP1: Osteopetrosis-associated transmembrane protein 1 precursor; InterPro: IPR019172 Osteopetrosis-associated transmembrane protein 1 (OSTM1) is required for osteoclast and melanocyte maturation and function. Mutations in OSTM1 give rise to autosomal recessive osteopetrosis, also called autosomal recessive Albers-Schonberg disease [, ].
Probab=28.12 E-value=1.1e+02 Score=25.30 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhheecc
Q 029203 17 LGYSIAIALGFLVLLSTVLLASYICCRR 44 (197)
Q Consensus 17 ~~~~I~i~i~~~vli~~i~l~~~~~~~~ 44 (197)
+++.|+++++++++.+++.+..|+.-++
T Consensus 189 ~~~~i~v~~~vl~lpv~FY~~s~~~~~~ 216 (237)
T PF09777_consen 189 ETAVIAVSVFVLFLPVLFYLSSYLHSER 216 (237)
T ss_pred hhHHHHHHHHHHHHHHHHHHhheeeecc
Confidence 3444555444444334344444444333
No 323
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=28.04 E-value=93 Score=27.71 Aligned_cols=16 Identities=44% Similarity=0.939 Sum_probs=8.3
Q ss_pred HHHHHHHHhheecccc
Q 029203 31 LSTVLLASYICCRRNN 46 (197)
Q Consensus 31 i~~i~l~~~~~~~~~~ 46 (197)
+++++|...+|.+|..
T Consensus 298 lL~llLs~Imc~rREG 313 (386)
T PF05510_consen 298 LLLLLLSYIMCCRREG 313 (386)
T ss_pred HHHHHHHHHheechHH
Confidence 3344455555666654
No 324
>PF03554 Herpes_UL73: UL73 viral envelope glycoprotein ; InterPro: IPR005211 This entry represents a conserved region found in a number of viral proteins: BLRF1, U46, 53, and UL73, collectively known as glycoprotein N. These UL73-like envelope glycoproteins, which associate in a high molecular mass complex with their counterpart protein gM, induce neutralizing antibody responses in the host. These glycoproteins are highly polymorphic, particularly in the N-terminal region [].; GO: 0019031 viral envelope
Probab=27.94 E-value=82 Score=21.68 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhheecc
Q 029203 17 LGYSIAIALGFLVLLSTVLLASYICCRR 44 (197)
Q Consensus 17 ~~~~I~i~i~~~vli~~i~l~~~~~~~~ 44 (197)
|.-+.+++-+++++++.++++-|.|..+
T Consensus 48 FsSIW~iiN~~il~~A~~vyLry~Cf~~ 75 (82)
T PF03554_consen 48 FSSIWAIINVVILLCAFCVYLRYLCFQK 75 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555556666666676777543
No 325
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=27.80 E-value=23 Score=29.99 Aligned_cols=35 Identities=14% Similarity=0.207 Sum_probs=22.0
Q ss_pred cccchhHHHHHHHHHHHHH-HHHHHHHhheeccccC
Q 029203 13 TNIGLGYSIAIALGFLVLL-STVLLASYICCRRNNS 47 (197)
Q Consensus 13 ~~~~~~~~I~i~i~~~vli-~~i~l~~~~~~~~~~~ 47 (197)
-....+++|.|.+++-+-+ +++.++-++..+.+++
T Consensus 222 ~~l~~G~VVlIslAiALG~v~ll~l~Gii~~~~~r~ 257 (281)
T PF12768_consen 222 KKLSRGFVVLISLAIALGTVFLLVLIGIILAYIRRR 257 (281)
T ss_pred ccccceEEEEEehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667788888888884444 4444444555555554
No 326
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=27.76 E-value=25 Score=20.94 Aligned_cols=6 Identities=50% Similarity=0.550 Sum_probs=2.3
Q ss_pred HHHHHh
Q 029203 34 VLLASY 39 (197)
Q Consensus 34 i~l~~~ 39 (197)
+.+++|
T Consensus 25 va~~iY 30 (43)
T PF08114_consen 25 VALFIY 30 (43)
T ss_pred HHHHHH
Confidence 333333
No 327
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=27.75 E-value=21 Score=36.97 Aligned_cols=52 Identities=31% Similarity=0.627 Sum_probs=41.0
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhC----CCCCcccCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL----NGSCPVCRNSP 172 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~----~~tCPlCR~~l 172 (197)
.......|-||.......+.+.-.- |.-.||..|+.+-+.. ...||-||..-
T Consensus 1104 ~s~~~~~c~~cr~k~~~~~m~lc~~-c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1104 RSAVNALCKVCRRKKQDEKMLLCDE-CLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred cccchhhhhhhhhcccchhhhhhHh-hhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 3455789999999988876665555 8999999999998854 34799998754
No 328
>PHA03048 IMV membrane protein; Provisional
Probab=27.57 E-value=1.2e+02 Score=21.28 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=14.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHh
Q 029203 13 TNIGLGYSIAIALGFLVLLSTVLLASY 39 (197)
Q Consensus 13 ~~~~~~~~I~i~i~~~vli~~i~l~~~ 39 (197)
+.+-..-++.+++|++.++-.+++..|
T Consensus 41 ~~wRalsii~FIlgivl~lG~~ifsmy 67 (93)
T PHA03048 41 TVWRALSGIAFVLGIVMTIGMLIYSMW 67 (93)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444566666666665554444443
No 329
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=27.54 E-value=48 Score=23.13 Aligned_cols=38 Identities=24% Similarity=0.582 Sum_probs=28.8
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLP 174 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 174 (197)
...|.-|-..+.--|.+ | |-.|+..+..|..|++++..
T Consensus 33 rS~C~~C~~~L~~~~lI---P----------i~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 33 RSHCPHCGHPLSWWDLI---P----------ILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CCcCcCCCCcCcccccc---h----------HHHHHHhCCCCcccCCCCCh
Confidence 46888887776655433 4 67899999999999998743
No 330
>PF14979 TMEM52: Transmembrane 52
Probab=27.52 E-value=84 Score=24.11 Aligned_cols=37 Identities=19% Similarity=0.037 Sum_probs=21.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhheec-cccCCCC
Q 029203 13 TNIGLGYSIAIALGFLVLLSTVLLASYICCR-RNNSSHN 50 (197)
Q Consensus 13 ~~~~~~~~I~i~i~~~vli~~i~l~~~~~~~-~~~~~~~ 50 (197)
+.+.-+|.|++++.+++++. +.-+...|.| ...++++
T Consensus 14 ~~W~~LWyIwLill~~~llL-LCG~ta~C~rfCClrk~~ 51 (154)
T PF14979_consen 14 TRWSSLWYIWLILLIGFLLL-LCGLTASCVRFCCLRKQA 51 (154)
T ss_pred cceehhhHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccc
Confidence 45555677877666655433 4455566877 4454444
No 331
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=27.40 E-value=1.1e+02 Score=21.76 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=11.5
Q ss_pred chhHHHHHHHHHHHHHH--HHHHHHhh
Q 029203 16 GLGYSIAIALGFLVLLS--TVLLASYI 40 (197)
Q Consensus 16 ~~~~~I~i~i~~~vli~--~i~l~~~~ 40 (197)
||.-.+.+++|+++++. ++++++||
T Consensus 2 gf~~~vl~l~g~llligftivvl~vyf 28 (126)
T PF13120_consen 2 GFIKMVLLLIGTLLLIGFTIVVLLVYF 28 (126)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 34444455555544443 34444444
No 332
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=27.16 E-value=21 Score=33.11 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=45.9
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSP 172 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l 172 (197)
......|.+|+.......+.+.+-+|.|.+...|+..|-.....||.|+..+
T Consensus 257 q~~~~~~~~~~~~~~~~eqk~l~~~~~~~~g~tsl~~e~~~~~v~~~~~tk~ 308 (553)
T KOG4430|consen 257 QENKNACGLCLSEADAKEQKGLEGNNQRQTGATSLMEEEAVESVCPLRVTKV 308 (553)
T ss_pred hhcccchhhchhhHhHHHhhhhhhcccchhhhhhhhhhhhhhhhhhcccccc
Confidence 3456789999999988888888888899999999999999889999998876
No 333
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=26.90 E-value=21 Score=30.46 Aligned_cols=7 Identities=57% Similarity=1.213 Sum_probs=0.0
Q ss_pred heecccc
Q 029203 40 ICCRRNN 46 (197)
Q Consensus 40 ~~~~~~~ 46 (197)
+|+|++|
T Consensus 168 icyrrkR 174 (290)
T PF05454_consen 168 ICYRRKR 174 (290)
T ss_dssp -------
T ss_pred Hhhhhhh
Confidence 3444333
No 334
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.69 E-value=34 Score=22.40 Aligned_cols=18 Identities=17% Similarity=0.325 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhhee
Q 029203 25 LGFLVLLSTVLLASYICC 42 (197)
Q Consensus 25 i~~~vli~~i~l~~~~~~ 42 (197)
.++++++++-.+++|..+
T Consensus 21 ~g~ll~flvGnyvlY~Ya 38 (69)
T PF04689_consen 21 AGLLLVFLVGNYVLYVYA 38 (69)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444455555443
No 335
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=26.67 E-value=1.1e+02 Score=30.18 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHhheec
Q 029203 22 AIALGFLVLLSTVLLASYICCR 43 (197)
Q Consensus 22 ~i~i~~~vli~~i~l~~~~~~~ 43 (197)
.++.+++++++++++.+++..+
T Consensus 553 ~~~~~v~~lll~~vv~~~~~~~ 574 (996)
T KOG0196|consen 553 SILAGVVFLLLAAVVVVAIVCS 574 (996)
T ss_pred HHHHHHHHHHHHHHHHHhheee
Confidence 3333444444334444444333
No 336
>PLN00055 photosystem II reaction center protein H; Provisional
Probab=26.67 E-value=1.2e+02 Score=20.38 Aligned_cols=24 Identities=21% Similarity=0.605 Sum_probs=9.8
Q ss_pred chhH--HHHHHHHHHHHHHHHHHHHh
Q 029203 16 GLGY--SIAIALGFLVLLSTVLLASY 39 (197)
Q Consensus 16 ~~~~--~I~i~i~~~vli~~i~l~~~ 39 (197)
|||. ++++..+++.++.++++-+|
T Consensus 36 gWGTtp~Mg~~m~lf~vfl~iileiy 61 (73)
T PLN00055 36 GWGTTPLMGVAMALFAVFLSIILEIY 61 (73)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHh
Confidence 4544 34444443443333443333
No 337
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=26.65 E-value=20 Score=31.37 Aligned_cols=52 Identities=17% Similarity=0.531 Sum_probs=27.3
Q ss_pred CCCCCCccccccccccCCcceeecC--CCCCcc--------chhhHHHHh-----hCCCCCcccCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMP--ECRHYF--------HLCCVDAWL-----KLNGSCPVCRNSP 172 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~--~C~H~F--------H~~CI~~Wl-----~~~~tCPlCR~~l 172 (197)
.++.++.|++|=+.. .|=.-..|+ .|.-.| |..|+..-- ..++.||.||..=
T Consensus 11 dedl~ElCPVCGDkV-SGYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQK 77 (475)
T KOG4218|consen 11 DEDLGELCPVCGDKV-SGYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQK 77 (475)
T ss_pred ccccccccccccCcc-ccceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhHHH
Confidence 345678999995442 222223444 233333 334544311 2245799999853
No 338
>PRK11901 hypothetical protein; Reviewed
Probab=26.47 E-value=63 Score=28.06 Aligned_cols=19 Identities=32% Similarity=0.576 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029203 20 SIAIALGFLVLLSTVLLAS 38 (197)
Q Consensus 20 ~I~i~i~~~vli~~i~l~~ 38 (197)
.+-|.+||+||+++|+-+-
T Consensus 37 h~MiGiGilVLlLLIi~Ig 55 (327)
T PRK11901 37 HMMIGIGILVLLLLIIAIG 55 (327)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4556677777666554443
No 339
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=26.30 E-value=1e+02 Score=23.10 Aligned_cols=23 Identities=22% Similarity=0.145 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 029203 17 LGYSIAIALGFLVLLSTVLLASY 39 (197)
Q Consensus 17 ~~~~I~i~i~~~vli~~i~l~~~ 39 (197)
|+.+++-++.|+++++++--++|
T Consensus 7 ~~~~~~qli~Flil~~~l~kfl~ 29 (141)
T PRK08476 7 PYLMLATFVVFLLLIVILNSWLY 29 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555554444433333
No 340
>PHA03156 hypothetical protein; Provisional
Probab=26.23 E-value=85 Score=21.91 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=16.0
Q ss_pred cccccchhHHHHHHHHHHH-HHHHHHHHHhheecc
Q 029203 11 YLTNIGLGYSIAIALGFLV-LLSTVLLASYICCRR 44 (197)
Q Consensus 11 ~~~~~~~~~~I~i~i~~~v-li~~i~l~~~~~~~~ 44 (197)
|..++.---.|++++-+++ +++.+++..|.|..+
T Consensus 49 y~psl~SFSSIWallN~~i~~~A~~ifL~y~CF~k 83 (90)
T PHA03156 49 FVPSIKTFSSIWAILNGIIFFCASLFFLRHLCFVK 83 (90)
T ss_pred ecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333335555554444 444455555666543
No 341
>KOG3352 consensus Cytochrome c oxidase, subunit Vb/COX4 [Energy production and conversion]
Probab=26.05 E-value=38 Score=26.06 Aligned_cols=8 Identities=25% Similarity=0.596 Sum_probs=4.7
Q ss_pred Ccccccccc
Q 029203 125 TTCSICLCE 133 (197)
Q Consensus 125 ~~CaICL~~ 133 (197)
.-| +|.++
T Consensus 112 VGC-~c~eD 119 (153)
T KOG3352|consen 112 VGC-GCEED 119 (153)
T ss_pred Eee-cccCC
Confidence 456 67665
No 342
>CHL00066 psbH photosystem II protein H
Probab=25.93 E-value=1.3e+02 Score=20.24 Aligned_cols=24 Identities=21% Similarity=0.605 Sum_probs=9.6
Q ss_pred chhH--HHHHHHHHHHHHHHHHHHHh
Q 029203 16 GLGY--SIAIALGFLVLLSTVLLASY 39 (197)
Q Consensus 16 ~~~~--~I~i~i~~~vli~~i~l~~~ 39 (197)
|||. ++++..+++.++.++++-+|
T Consensus 36 gWGTtp~Mgv~m~lf~vfl~iiLeiy 61 (73)
T CHL00066 36 GWGTTPLMGVAMALFAVFLSIILEIY 61 (73)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHh
Confidence 4544 34443333333333333333
No 343
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=25.85 E-value=95 Score=31.26 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=35.5
Q ss_pred CCCCcccccccccc---CCcceeecCCCCCccchhhHHHHh-hCCCCCcccCCCCC
Q 029203 122 NINTTCSICLCEYK---DLEMLRMMPECRHYFHLCCVDAWL-KLNGSCPVCRNSPL 173 (197)
Q Consensus 122 ~~~~~CaICL~~~~---~~~~vr~l~~C~H~FH~~CI~~Wl-~~~~tCPlCR~~l~ 173 (197)
-....|.||=+++. +|+.-.-...|+--.|+.|.+-=. +.++.||.|+...-
T Consensus 13 ~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 13 ADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 35679999988874 444444333477779999984322 33568999988764
No 344
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=25.79 E-value=32 Score=18.11 Aligned_cols=9 Identities=44% Similarity=1.099 Sum_probs=7.1
Q ss_pred CCcccCCCC
Q 029203 164 SCPVCRNSP 172 (197)
Q Consensus 164 tCPlCR~~l 172 (197)
.||+|...+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 699997766
No 345
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=25.74 E-value=97 Score=27.91 Aligned_cols=35 Identities=26% Similarity=0.271 Sum_probs=18.1
Q ss_pred CCCcccccchhHHHHHHHHHHHHHHHHHHHHhhee
Q 029203 8 SPNYLTNIGLGYSIAIALGFLVLLSTVLLASYICC 42 (197)
Q Consensus 8 s~~~~~~~~~~~~I~i~i~~~vli~~i~l~~~~~~ 42 (197)
...|.-+.+|.-.|+.+..++.+++++++.+..|+
T Consensus 32 ~~~Y~~Sv~~~a~iaavwlil~ll~ll~~~~~~CC 66 (418)
T cd07912 32 DEIYQQSLLILASIPAACLILSLLFLLVYLITRCC 66 (418)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44566666666666655544444444433333443
No 346
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=25.71 E-value=43 Score=24.31 Aligned_cols=26 Identities=23% Similarity=0.527 Sum_probs=14.7
Q ss_pred CccccccccccCCc-ceeecCCCCCcc
Q 029203 125 TTCSICLCEYKDLE-MLRMMPECRHYF 150 (197)
Q Consensus 125 ~~CaICL~~~~~~~-~vr~l~~C~H~F 150 (197)
..|+-|-.+|.=.+ ...+.|.|+|-+
T Consensus 3 p~CP~C~seytY~dg~~~iCpeC~~EW 29 (109)
T TIGR00686 3 PPCPKCNSEYTYHDGTQLICPSCLYEW 29 (109)
T ss_pred CcCCcCCCcceEecCCeeECccccccc
Confidence 46888888875222 334455466654
No 347
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=25.65 E-value=16 Score=23.54 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=8.8
Q ss_pred CCCCcccCCCCCC
Q 029203 162 NGSCPVCRNSPLP 174 (197)
Q Consensus 162 ~~tCPlCR~~l~~ 174 (197)
|..||+|-+.+.+
T Consensus 8 H~HC~VCg~aIp~ 20 (64)
T COG4068 8 HRHCVVCGKAIPP 20 (64)
T ss_pred CccccccCCcCCC
Confidence 6678888666543
No 348
>PF10812 DUF2561: Protein of unknown function (DUF2561); InterPro: IPR024381 This family of proteins with unknown function appears to be found predominantly in Mycobacterium spp.
Probab=25.53 E-value=1.2e+02 Score=24.59 Aligned_cols=20 Identities=15% Similarity=0.037 Sum_probs=8.7
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 029203 16 GLGYSIAIALGFLVLLSTVL 35 (197)
Q Consensus 16 ~~~~~I~i~i~~~vli~~i~ 35 (197)
.|..+++|++..++++..+.
T Consensus 63 ~WvLY~VI~VSaaVIagAVP 82 (207)
T PF10812_consen 63 PWVLYAVIGVSAAVIAGAVP 82 (207)
T ss_pred CEeehHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 349
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.50 E-value=97 Score=22.61 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=6.4
Q ss_pred chhHHHHHHHHHHH
Q 029203 16 GLGYSIAIALGFLV 29 (197)
Q Consensus 16 ~~~~~I~i~i~~~v 29 (197)
.|++|+.++|||..
T Consensus 74 PwglIv~lllGf~A 87 (116)
T COG5336 74 PWGLIVFLLLGFGA 87 (116)
T ss_pred cHHHHHHHHHHHHH
Confidence 34444444444443
No 350
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=25.45 E-value=55 Score=25.13 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=25.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhheecccc
Q 029203 15 IGLGYSIAIALGFLVLLSTVLLASYICCRRNN 46 (197)
Q Consensus 15 ~~~~~~I~i~i~~~vli~~i~l~~~~~~~~~~ 46 (197)
.+++|.--+++++.|++.+.+++++||..--.
T Consensus 113 p~~gY~nklilaisvtvv~~iliii~CLiei~ 144 (154)
T PF14914_consen 113 PGYGYNNKLILAISVTVVVMILIIIFCLIEIC 144 (154)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888889999988888888888874433
No 351
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=25.39 E-value=83 Score=20.61 Aligned_cols=13 Identities=38% Similarity=0.577 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 029203 20 SIAIALGFLVLLS 32 (197)
Q Consensus 20 ~I~i~i~~~vli~ 32 (197)
+|.|+++++++++
T Consensus 4 iiSIvLai~lLI~ 16 (66)
T PF07438_consen 4 IISIVLAIALLIS 16 (66)
T ss_pred hHHHHHHHHHHHH
Confidence 4455555555444
No 352
>KOG1773 consensus Stress responsive protein [General function prediction only]
Probab=25.38 E-value=83 Score=20.55 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhheecccc
Q 029203 19 YSIAIALGFLVLLSTVLLASYICCRRNN 46 (197)
Q Consensus 19 ~~I~i~i~~~vli~~i~l~~~~~~~~~~ 46 (197)
..|-+++.+++.+-.++-++|+|..+.|
T Consensus 33 ~~InilL~~L~~iPgiIhA~yii~~~~r 60 (63)
T KOG1773|consen 33 VLINILLTLLGFIPGIIHAIYIIFFRGR 60 (63)
T ss_pred hHHHHHHHHHHHhHHHHhhEEEEEEecC
Confidence 4566677777777888899998876655
No 353
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=25.32 E-value=31 Score=22.28 Aligned_cols=9 Identities=44% Similarity=1.342 Sum_probs=7.9
Q ss_pred CCcccCCCC
Q 029203 164 SCPVCRNSP 172 (197)
Q Consensus 164 tCPlCR~~l 172 (197)
.||+||.+|
T Consensus 10 aCP~~kg~L 18 (60)
T COG2835 10 ACPVCKGPL 18 (60)
T ss_pred eccCcCCcc
Confidence 699999986
No 354
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=25.23 E-value=38 Score=33.04 Aligned_cols=49 Identities=18% Similarity=0.391 Sum_probs=32.9
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhC------CCCCcccCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL------NGSCPVCRNS 171 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~------~~tCPlCR~~ 171 (197)
......|..|..-.- ...-+.+.|+|.||.+|+..|.-. -..|++|+..
T Consensus 226 ~g~~~mC~~C~~tlf--n~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~ 280 (889)
T KOG1356|consen 226 KGIREMCDRCETTLF--NIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLK 280 (889)
T ss_pred cCcchhhhhhccccc--ceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHh
Confidence 455678888865422 224455679999999999999511 1257877654
No 355
>PHA02898 virion envelope protein; Provisional
Probab=25.11 E-value=1.3e+02 Score=21.00 Aligned_cols=27 Identities=15% Similarity=0.367 Sum_probs=15.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHh
Q 029203 13 TNIGLGYSIAIALGFLVLLSTVLLASY 39 (197)
Q Consensus 13 ~~~~~~~~I~i~i~~~vli~~i~l~~~ 39 (197)
+.+-..-++++++|++.++-++++..|
T Consensus 42 ~~wRalSii~FIlgivl~lG~~ifs~y 68 (92)
T PHA02898 42 SALRSISIISFILAIILILGIIFFKGY 68 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444566666676666665555554
No 356
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=25.10 E-value=1.5e+02 Score=23.06 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=8.9
Q ss_pred HHHHHHhheeccccCCC
Q 029203 33 TVLLASYICCRRNNSSH 49 (197)
Q Consensus 33 ~i~l~~~~~~~~~~~~~ 49 (197)
..++++||.+|..|.+.
T Consensus 105 s~l~i~yfvir~~R~r~ 121 (163)
T PF06679_consen 105 SALAILYFVIRTFRLRR 121 (163)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 34445555556655443
No 357
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=24.97 E-value=93 Score=23.97 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=13.8
Q ss_pred ccccchhHHHHHHHHHHHHHHHHH
Q 029203 12 LTNIGLGYSIAIALGFLVLLSTVL 35 (197)
Q Consensus 12 ~~~~~~~~~I~i~i~~~vli~~i~ 35 (197)
...+|+++.+++.+.++++..+++
T Consensus 56 spy~G~~s~~~ftv~fv~m~~~ll 79 (155)
T PF10777_consen 56 SPYFGLGSVWGFTVFFVVMAAFLL 79 (155)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHH
Confidence 345667777766666555444333
No 358
>PF13190 PDGLE: PDGLE domain
Probab=24.92 E-value=1.8e+02 Score=20.01 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=19.4
Q ss_pred CCCCCccccc----chhHHHHHHHHHHHHHHHHHHH
Q 029203 6 TPSPNYLTNI----GLGYSIAIALGFLVLLSTVLLA 37 (197)
Q Consensus 6 ~~s~~~~~~~----~~~~~I~i~i~~~vli~~i~l~ 37 (197)
+|-|+|.-.. .++++++-++|+++++.+...+
T Consensus 50 a~lpDY~i~g~~~~~~g~~lsgivGv~~~~~l~~~i 85 (88)
T PF13190_consen 50 APLPDYTIPGLGNQALGTILSGIVGVALTLALAYGI 85 (88)
T ss_pred CCCCCcCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 4455554422 4678888888887766554433
No 359
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=24.63 E-value=92 Score=27.91 Aligned_cols=9 Identities=22% Similarity=0.497 Sum_probs=4.1
Q ss_pred Hhheecccc
Q 029203 38 SYICCRRNN 46 (197)
Q Consensus 38 ~~~~~~~~~ 46 (197)
++++.+|+|
T Consensus 406 ~~~~v~rrr 414 (436)
T PTZ00208 406 FFIMVKRRR 414 (436)
T ss_pred hheeeeecc
Confidence 444444444
No 360
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=24.63 E-value=86 Score=19.14 Aligned_cols=21 Identities=38% Similarity=0.338 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhheecc
Q 029203 24 ALGFLVLLSTVLLASYICCRR 44 (197)
Q Consensus 24 ~i~~~vli~~i~l~~~~~~~~ 44 (197)
.+|..+|..++.+..|-++||
T Consensus 24 ~ig~avL~v~V~i~v~kwiRr 44 (46)
T PF10389_consen 24 TIGGAVLGVIVGIAVYKWIRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455555555566666666554
No 361
>COG3462 Predicted membrane protein [Function unknown]
Probab=24.61 E-value=61 Score=23.58 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHh
Q 029203 25 LGFLVLLSTVLLASY 39 (197)
Q Consensus 25 i~~~vli~~i~l~~~ 39 (197)
+.++++++++++.++
T Consensus 56 ~~~vvli~lvvfm~~ 70 (117)
T COG3462 56 FWAVVLIFLVVFMFY 70 (117)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444443333333
No 362
>PHA02902 putative IMV membrane protein; Provisional
Probab=24.46 E-value=1.1e+02 Score=20.02 Aligned_cols=8 Identities=25% Similarity=0.331 Sum_probs=3.4
Q ss_pred CCHHHHhc
Q 029203 96 LDQAVINS 103 (197)
Q Consensus 96 l~~~~~~~ 103 (197)
+.++.+++
T Consensus 54 lTpDQirA 61 (70)
T PHA02902 54 LTPDQIKA 61 (70)
T ss_pred CCHHHHHH
Confidence 44444443
No 363
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=24.46 E-value=61 Score=26.44 Aligned_cols=25 Identities=32% Similarity=0.246 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHH--HHHHHHhhe
Q 029203 17 LGYSIAIALGFLVLLS--TVLLASYIC 41 (197)
Q Consensus 17 ~~~~I~i~i~~~vli~--~i~l~~~~~ 41 (197)
..++|++++.++.+++ .++++--+.
T Consensus 133 ClIIIAVLfLICT~LfLSTVVLANKVS 159 (227)
T PF05399_consen 133 CLIIIAVLFLICTLLFLSTVVLANKVS 159 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555544444 344444333
No 364
>PRK01658 holin-like protein; Validated
Probab=24.40 E-value=93 Score=22.92 Aligned_cols=30 Identities=7% Similarity=0.222 Sum_probs=15.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhheec
Q 029203 14 NIGLGYSIAIALGFLVLLSTVLLASYICCR 43 (197)
Q Consensus 14 ~~~~~~~I~i~i~~~vli~~i~l~~~~~~~ 43 (197)
..++.+.++++++.++.+.+.-...-+..+
T Consensus 86 ~~~~~il~~ivvsT~l~l~vtg~~~~~l~~ 115 (122)
T PRK01658 86 SKGISLFLVVVISTFVVMIVTGYLTQLLAK 115 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666665555544444433333
No 365
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=24.21 E-value=20 Score=22.48 Aligned_cols=9 Identities=33% Similarity=1.121 Sum_probs=4.2
Q ss_pred CCcccCCCC
Q 029203 164 SCPVCRNSP 172 (197)
Q Consensus 164 tCPlCR~~l 172 (197)
+||+|.+.+
T Consensus 26 tCP~C~a~~ 34 (54)
T PF09237_consen 26 TCPICGAVI 34 (54)
T ss_dssp E-TTT--EE
T ss_pred CCCcchhhc
Confidence 788887644
No 366
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.19 E-value=1e+02 Score=20.61 Aligned_cols=7 Identities=14% Similarity=0.601 Sum_probs=2.7
Q ss_pred CCHHHHh
Q 029203 96 LDQAVIN 102 (197)
Q Consensus 96 l~~~~~~ 102 (197)
++++.++
T Consensus 39 ine~~iR 45 (71)
T COG3763 39 INEEMIR 45 (71)
T ss_pred CCHHHHH
Confidence 3334333
No 367
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=24.16 E-value=52 Score=23.39 Aligned_cols=9 Identities=22% Similarity=0.449 Sum_probs=3.5
Q ss_pred chhHHHHHH
Q 029203 16 GLGYSIAIA 24 (197)
Q Consensus 16 ~~~~~I~i~ 24 (197)
-+|++|+++
T Consensus 80 fyGf~igL~ 88 (97)
T PF05440_consen 80 FYGFIIGLV 88 (97)
T ss_pred HHHHHHHHH
Confidence 344444333
No 368
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=24.13 E-value=1.2e+02 Score=23.33 Aligned_cols=22 Identities=5% Similarity=0.107 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 029203 17 LGYSIAIALGFLVLLSTVLLAS 38 (197)
Q Consensus 17 ~~~~I~i~i~~~vli~~i~l~~ 38 (197)
|..+++-++-|+++++++..++
T Consensus 19 ~~~~~~~iinflIl~~lL~~fl 40 (174)
T PRK07352 19 LNLLETNLINLAIVIGLLYYFG 40 (174)
T ss_pred hhHHHHHHHHHHHHHHHHHHHh
Confidence 3334444455555444444433
No 369
>PF07253 Gypsy: Gypsy protein; InterPro: IPR009882 This family consists of several Gypsy/Env proteins from Drosophila and Ceratitis fruit fly species. Gypsy is an endogenous retrovirus of Drosophila melanogaster. Phylogenetic studies suggest that occasional horizontal transfer events of gypsy occur between Drosophila species. Gypsy possesses infective properties associated with the products of the envelope gene that might be at the origin of these interspecies transfers [].
Probab=24.06 E-value=60 Score=29.68 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHhheecccc
Q 029203 21 IAIALGFLVLLSTVLLASYICCRRNN 46 (197)
Q Consensus 21 I~i~i~~~vli~~i~l~~~~~~~~~~ 46 (197)
+++++|+++.+.+++++++++..+++
T Consensus 418 i~l~~gv~l~~~Ii~~i~~~~~~r~~ 443 (472)
T PF07253_consen 418 IWLVFGVLLSIMIIIIIALILMLRKK 443 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555555555555555444444
No 370
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=23.87 E-value=36 Score=25.66 Aligned_cols=22 Identities=18% Similarity=0.566 Sum_probs=16.1
Q ss_pred cCCCCCccchhhHHHHhhCCCCCcccCCCC
Q 029203 143 MPECRHYFHLCCVDAWLKLNGSCPVCRNSP 172 (197)
Q Consensus 143 l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l 172 (197)
.++|||+|+.. +..||.|..+.
T Consensus 32 C~~CG~v~~PP--------r~~Cp~C~~~~ 53 (140)
T COG1545 32 CKKCGRVYFPP--------RAYCPKCGSET 53 (140)
T ss_pred cCCCCeEEcCC--------cccCCCCCCCC
Confidence 34699999653 56799998763
No 371
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=23.83 E-value=52 Score=27.21 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=19.0
Q ss_pred CccccccccccCCcceeecCCCCCcc
Q 029203 125 TTCSICLCEYKDLEMLRMMPECRHYF 150 (197)
Q Consensus 125 ~~CaICL~~~~~~~~vr~l~~C~H~F 150 (197)
..|++|-+.+...+.--..+ .+|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~-~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICP-QNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcC-CCCCC
Confidence 57999999998666555555 58888
No 372
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=23.77 E-value=1.1e+02 Score=27.25 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhheeccccCCCCCC
Q 029203 20 SIAIALGFLVLLSTVLLASYICCRRNNSSHNSN 52 (197)
Q Consensus 20 ~I~i~i~~~vli~~i~l~~~~~~~~~~~~~~~~ 52 (197)
+++.+.++..++.++++++|++++..+++.+..
T Consensus 21 ~la~v~~~~l~l~Ll~ll~yl~~~CC~r~~~~~ 53 (406)
T PF04906_consen 21 ILASVAAACLALSLLFLLIYLICRCCCRRPREE 53 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcc
Confidence 444444445556666677788888888666544
No 373
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=23.56 E-value=1.4e+02 Score=19.61 Aligned_cols=7 Identities=43% Similarity=0.714 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 029203 28 LVLLSTV 34 (197)
Q Consensus 28 ~vli~~i 34 (197)
+++++++
T Consensus 21 vLLLsIl 27 (66)
T PF13179_consen 21 VLLLSIL 27 (66)
T ss_pred HHHHHHH
Confidence 3333333
No 374
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=23.56 E-value=1.6e+02 Score=16.87 Aligned_cols=17 Identities=35% Similarity=0.555 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029203 19 YSIAIALGFLVLLSTVL 35 (197)
Q Consensus 19 ~~I~i~i~~~vli~~i~ 35 (197)
+.+++.+|++.++.+++
T Consensus 8 ~~lan~lG~~~~~LIVl 24 (35)
T PF10215_consen 8 YTLANFLGVAAMVLIVL 24 (35)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35566666655444443
No 375
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=23.53 E-value=75 Score=31.10 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhe
Q 029203 19 YSIAIALGFLVLLSTVLLASYIC 41 (197)
Q Consensus 19 ~~I~i~i~~~vli~~i~l~~~~~ 41 (197)
++|++++++++++++++++++++
T Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~ 652 (968)
T PLN00113 630 FYITCTLGAFLVLALVAFGFVFI 652 (968)
T ss_pred eehhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 376
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=23.35 E-value=31 Score=24.52 Aligned_cols=12 Identities=17% Similarity=0.221 Sum_probs=5.2
Q ss_pred HHHHHhheeccc
Q 029203 34 VLLASYICCRRN 45 (197)
Q Consensus 34 i~l~~~~~~~~~ 45 (197)
++.++||...|.
T Consensus 18 ~~~ifyFli~RP 29 (97)
T COG1862 18 IFAIFYFLIIRP 29 (97)
T ss_pred HHHHHHHhhcCH
Confidence 344455544333
No 377
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=23.24 E-value=1.5e+02 Score=26.20 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=10.8
Q ss_pred ccccchhHHHHHHHHHHHHHHHH
Q 029203 12 LTNIGLGYSIAIALGFLVLLSTV 34 (197)
Q Consensus 12 ~~~~~~~~~I~i~i~~~vli~~i 34 (197)
.++....+.+++++|+++-+.++
T Consensus 393 ~P~~~~~l~~~~~~Gl~lg~~~~ 415 (444)
T TIGR03017 393 SPRLLLNLVLSIFLGMLLGIGFA 415 (444)
T ss_pred CCchHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555444333
No 378
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=23.24 E-value=1.6e+02 Score=23.56 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=7.8
Q ss_pred chhHHHHHHHHHHHHH
Q 029203 16 GLGYSIAIALGFLVLL 31 (197)
Q Consensus 16 ~~~~~I~i~i~~~vli 31 (197)
...+.+++++|+++.+
T Consensus 175 ~~~~~~g~~~G~~~~~ 190 (226)
T TIGR01006 175 KRNLLIGFLLGLVVAL 190 (226)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555433
No 379
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=23.08 E-value=28 Score=18.72 Aligned_cols=12 Identities=33% Similarity=0.944 Sum_probs=5.9
Q ss_pred CCcccCCCCCCC
Q 029203 164 SCPVCRNSPLPT 175 (197)
Q Consensus 164 tCPlCR~~l~~~ 175 (197)
+||.|...|...
T Consensus 1 ~CP~C~s~l~~~ 12 (28)
T PF03119_consen 1 TCPVCGSKLVRE 12 (28)
T ss_dssp B-TTT--BEEE-
T ss_pred CcCCCCCEeEcC
Confidence 589998887633
No 380
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=22.95 E-value=24 Score=30.19 Aligned_cols=32 Identities=25% Similarity=0.502 Sum_probs=25.1
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHH
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDA 157 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~ 157 (197)
...|+-|.+-+-+...||.. =.|+||..|+.-
T Consensus 92 GTKCsaC~~GIpPtqVVRkA--qd~VYHl~CF~C 123 (383)
T KOG4577|consen 92 GTKCSACQEGIPPTQVVRKA--QDFVYHLHCFAC 123 (383)
T ss_pred CCcchhhcCCCChHHHHHHh--hcceeehhhhhh
Confidence 57899998888877777765 579999999743
No 381
>PRK13275 mtrF tetrahydromethanopterin S-methyltransferase subunit F; Provisional
Probab=22.71 E-value=1.6e+02 Score=19.50 Aligned_cols=8 Identities=25% Similarity=0.625 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 029203 19 YSIAIALG 26 (197)
Q Consensus 19 ~~I~i~i~ 26 (197)
+.++++++
T Consensus 45 ~aiG~~~A 52 (67)
T PRK13275 45 FAIGFLLA 52 (67)
T ss_pred HHHHHHHH
Confidence 33333333
No 382
>PHA03282 envelope glycoprotein E; Provisional
Probab=22.69 E-value=2.4e+02 Score=26.01 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhheeccccCC
Q 029203 24 ALGFLVLLSTVLLASYICCRRNNSS 48 (197)
Q Consensus 24 ~i~~~vli~~i~l~~~~~~~~~~~~ 48 (197)
++|..+.++++.+.+..|...++++
T Consensus 413 vlGaalgLav~glsvw~C~~c~r~r 437 (540)
T PHA03282 413 VLGAALGLAAAGLSVWACVTCRRAR 437 (540)
T ss_pred HHHHHHHHHHHHhhheeeeeehhhh
Confidence 3444444556667777777766653
No 383
>PRK02624 psbH photosystem II reaction center protein H; Provisional
Probab=22.69 E-value=1.7e+02 Score=19.05 Aligned_cols=25 Identities=20% Similarity=0.456 Sum_probs=10.1
Q ss_pred cchhH--HHHHHHHHHHHHHHHHHHHh
Q 029203 15 IGLGY--SIAIALGFLVLLSTVLLASY 39 (197)
Q Consensus 15 ~~~~~--~I~i~i~~~vli~~i~l~~~ 39 (197)
-||+. ++++..+++.++.++++-+|
T Consensus 23 PGWGTTplMgv~m~Lf~vFl~iiLeIY 49 (64)
T PRK02624 23 PGWGTTPVMAVFMVLFLVFLLIILQIY 49 (64)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHh
Confidence 34443 34444443443333444333
No 384
>PRK12705 hypothetical protein; Provisional
Probab=22.59 E-value=65 Score=29.78 Aligned_cols=10 Identities=30% Similarity=0.471 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 029203 20 SIAIALGFLV 29 (197)
Q Consensus 20 ~I~i~i~~~v 29 (197)
++.+++++++
T Consensus 4 ~~~~~~~~~~ 13 (508)
T PRK12705 4 SILLVILLLL 13 (508)
T ss_pred hHHHHHHHHH
Confidence 3333333333
No 385
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=22.58 E-value=1.5e+02 Score=22.80 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 029203 20 SIAIALGFLVLLST 33 (197)
Q Consensus 20 ~I~i~i~~~vli~~ 33 (197)
+++.++.|++++++
T Consensus 19 ~~~~~i~Flil~~i 32 (173)
T PRK13460 19 VVWTLVTFLVVVLV 32 (173)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444433
No 386
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=22.57 E-value=1e+02 Score=24.55 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=9.6
Q ss_pred chhhHHHHh--hCCCCCcc
Q 029203 151 HLCCVDAWL--KLNGSCPV 167 (197)
Q Consensus 151 H~~CI~~Wl--~~~~tCPl 167 (197)
..+-+..|| ..+..+|+
T Consensus 125 ~G~~~R~~L~~Lr~~~~p~ 143 (186)
T PF07406_consen 125 PGENFRSYLLDLRNSSTPL 143 (186)
T ss_pred ccccHHHHHHHHHhccCCc
Confidence 346777888 33444543
No 387
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.54 E-value=45 Score=25.80 Aligned_cols=45 Identities=27% Similarity=0.378 Sum_probs=29.5
Q ss_pred ccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 128 SICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 128 aICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
.||+.-=...+..-.-|.=.+-||..|-.+-+. .||-|..++-..
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI~---~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTIT---SCPNCSTPIRGD 52 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHHH---HCcCCCCCCCCc
Confidence 366655444444444444567899999877655 799998887543
No 388
>PF15106 TMEM156: TMEM156 protein family
Probab=22.50 E-value=1.2e+02 Score=24.72 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhheeccccCCCCCC
Q 029203 20 SIAIALGFLVLLSTVLLASYICCRRNNSSHNSN 52 (197)
Q Consensus 20 ~I~i~i~~~vli~~i~l~~~~~~~~~~~~~~~~ 52 (197)
+.|.++.++|+++++++++|-...-.||-+.++
T Consensus 176 ITWYvLVllVfiflii~iI~KIle~hrrvqkwq 208 (226)
T PF15106_consen 176 ITWYVLVLLVFIFLIILIIYKILEGHRRVQKWQ 208 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHh
Confidence 667777777777777666664333333334444
No 389
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=21.64 E-value=54 Score=27.25 Aligned_cols=41 Identities=20% Similarity=0.361 Sum_probs=30.4
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCC--Ccc
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGS--CPV 167 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~t--CPl 167 (197)
...|+|-+..+.-. ....+|+|.|-.+-|...|+...| ||.
T Consensus 189 ~nrCpitl~p~~~p---ils~kcnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 189 SNRCPITLNPDFYP---ILSSKCNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred cccCCcccCcchhH---HHHhhhcccccHHHHHHHhcCCceeecch
Confidence 46899988876654 223369999999999999986554 663
No 390
>PF14851 FAM176: FAM176 family
Probab=21.64 E-value=2.3e+02 Score=21.88 Aligned_cols=26 Identities=15% Similarity=0.050 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhheecc
Q 029203 19 YSIAIALGFLVLLSTVLLASYICCRR 44 (197)
Q Consensus 19 ~~I~i~i~~~vli~~i~l~~~~~~~~ 44 (197)
+.+.++.|+++-+++.++++++.+..
T Consensus 22 ~aLYFv~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 22 FALYFVSGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 45667777777666666666654333
No 391
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=21.52 E-value=92 Score=23.88 Aligned_cols=16 Identities=13% Similarity=0.096 Sum_probs=10.0
Q ss_pred CCCCCCcccccccccc
Q 029203 120 SNNINTTCSICLCEYK 135 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~ 135 (197)
....+..-+++|-+-.
T Consensus 93 dmGg~LSFslAlLD~~ 108 (151)
T PF14584_consen 93 DMGGDLSFSLALLDDN 108 (151)
T ss_pred cccccceeeeEEEeCC
Confidence 3455677788877633
No 392
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=21.51 E-value=1.2e+02 Score=19.86 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=16.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHH
Q 029203 14 NIGLGYSIAIALGFLVLLSTVLLAS 38 (197)
Q Consensus 14 ~~~~~~~I~i~i~~~vli~~i~l~~ 38 (197)
-+|.+++++++.++-++..+++++-
T Consensus 12 MGgyafyVWlA~~~tll~l~~l~v~ 36 (67)
T COG3114 12 MGGYAFYVWLAVGMTLLPLAVLVVH 36 (67)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888766555444433
No 393
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=21.45 E-value=1.1e+02 Score=24.49 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 029203 22 AIALGFLVLLST 33 (197)
Q Consensus 22 ~i~i~~~vli~~ 33 (197)
++++|+++.+++
T Consensus 55 ~~~~Gili~~~v 66 (200)
T PF05473_consen 55 GILIGILITIFV 66 (200)
T ss_pred HHHHHHHHHHHH
Confidence 344444443333
No 394
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=21.31 E-value=1.4e+02 Score=24.73 Aligned_cols=18 Identities=33% Similarity=0.318 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 029203 23 IALGFLVLLSTVLLASYI 40 (197)
Q Consensus 23 i~i~~~vli~~i~l~~~~ 40 (197)
|++.++.++.++++.+|.
T Consensus 195 IaliVitl~vf~LvgLyr 212 (259)
T PF07010_consen 195 IALIVITLSVFTLVGLYR 212 (259)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333344444443
No 395
>PLN02400 cellulose synthase
Probab=21.12 E-value=72 Score=32.21 Aligned_cols=52 Identities=17% Similarity=0.278 Sum_probs=34.4
Q ss_pred CCCCcccccccccc---CCcceeecCCCCCccchhhHHHHh-hCCCCCcccCCCCC
Q 029203 122 NINTTCSICLCEYK---DLEMLRMMPECRHYFHLCCVDAWL-KLNGSCPVCRNSPL 173 (197)
Q Consensus 122 ~~~~~CaICL~~~~---~~~~vr~l~~C~H~FH~~CI~~Wl-~~~~tCPlCR~~l~ 173 (197)
.+...|.||=+++. +|+.-.-...|+---|+.|-+-=- +.++.||.||...-
T Consensus 34 ~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 34 LNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred cCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 34569999988874 444333333477778999974211 23568999998764
No 396
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=21.09 E-value=12 Score=26.52 Aligned_cols=52 Identities=21% Similarity=0.367 Sum_probs=16.2
Q ss_pred CCccccccccccCCc-ceeecCCCCCccchhhHHHHhhCC----CCCcccCCCCCCCCC
Q 029203 124 NTTCSICLCEYKDLE-MLRMMPECRHYFHLCCVDAWLKLN----GSCPVCRNSPLPTPL 177 (197)
Q Consensus 124 ~~~CaICL~~~~~~~-~vr~l~~C~H~FH~~CI~~Wl~~~----~tCPlCR~~l~~~~~ 177 (197)
.+.|.||-+.+.-.+ .....+ =||.|- .|....|... ..|++|....+....
T Consensus 14 ~E~C~~C~~~i~~~~~~~~~C~-~GH~w~-RC~lT~l~i~~~~~r~C~~C~~~~l~~~~ 70 (99)
T PF12660_consen 14 FEKCPICGAPIPFDDLDEAQCE-NGHVWP-RCALTFLPIQTPGVRVCPVCGRRALDPEP 70 (99)
T ss_dssp ---------------SSEEE-T-TS-EEE-B-SSS-SBS-SS-EEE-TTT--EEE-GGG
T ss_pred cccccccccccccCCcCEeECC-CCCEEe-eeeeeeeeeccCCeeEcCCCCCEEecCcc
Confidence 379999999876443 334433 489984 4555555222 479999887765433
No 397
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=20.97 E-value=2.4e+02 Score=17.96 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=13.4
Q ss_pred CCCCCCCC-CCcccccchhHHHHHHHHHHHHHHHHH
Q 029203 1 MSTPATPS-PNYLTNIGLGYSIAIALGFLVLLSTVL 35 (197)
Q Consensus 1 ~~~~~~~s-~~~~~~~~~~~~I~i~i~~~vli~~i~ 35 (197)
|+..+... +...-..-|..++.|++.++=++++.+
T Consensus 1 Ms~~~~~~~~~~~k~~E~~~flfl~~~l~PiL~v~~ 36 (56)
T PF06796_consen 1 MSSQPKSESDKSTKRSELKAFLFLAVVLFPILAVAF 36 (56)
T ss_pred CCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554332 233333334434433333333333333
No 398
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=20.91 E-value=42 Score=18.48 Aligned_cols=24 Identities=38% Similarity=0.714 Sum_probs=8.2
Q ss_pred ccccccccccC-CcceeecCCCCCc
Q 029203 126 TCSICLCEYKD-LEMLRMMPECRHY 149 (197)
Q Consensus 126 ~CaICL~~~~~-~~~vr~l~~C~H~ 149 (197)
.|.-|-.++.= +..+.+-|.|+|.
T Consensus 4 ~Cp~C~se~~y~D~~~~vCp~C~~e 28 (30)
T PF08274_consen 4 KCPLCGSEYTYEDGELLVCPECGHE 28 (30)
T ss_dssp --TTT-----EE-SSSEEETTTTEE
T ss_pred CCCCCCCcceeccCCEEeCCccccc
Confidence 46667666642 2233444556664
No 399
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=20.86 E-value=51 Score=24.09 Aligned_cols=8 Identities=13% Similarity=0.438 Sum_probs=3.0
Q ss_pred hheecccc
Q 029203 39 YICCRRNN 46 (197)
Q Consensus 39 ~~~~~~~~ 46 (197)
||.+|..+
T Consensus 17 yf~iRPQk 24 (113)
T PRK06531 17 FFMQRQQK 24 (113)
T ss_pred HheechHH
Confidence 33333333
No 400
>PF15069 FAM163: FAM163 family
Probab=20.58 E-value=1.2e+02 Score=23.18 Aligned_cols=6 Identities=33% Similarity=1.243 Sum_probs=2.8
Q ss_pred Cccccc
Q 029203 125 TTCSIC 130 (197)
Q Consensus 125 ~~CaIC 130 (197)
.-|+-|
T Consensus 92 ~~CptC 97 (143)
T PF15069_consen 92 SYCPTC 97 (143)
T ss_pred CcCCCC
Confidence 344444
No 401
>PF00737 PsbH: Photosystem II 10 kDa phosphoprotein; InterPro: IPR001056 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight phosphoprotein PsbH found in PSII. The phosphorylation site of PsbH is located in the N terminus, where reversible phosphorylation is light-dependent and redox-controlled. PsbH is necessary for the photoprotection of PSII, being required for: (1) the rapid degradation of photodamaged D1 core protein to prevent further oxidative damage to the PSII core, and (2) the insertion of newly synthesised D1 protein into the thylakoid membrane []. PsbH may also regulate the transfer of electrons from D2 (Qa) to D1 (Qb) in the reaction core.; GO: 0042301 phosphate ion binding, 0015979 photosynthesis, 0050821 protein stabilization, 0009523 photosystem II, 0016020 membrane; PDB: 3PRR_H 2AXT_h 3BZ2_H 3BZ1_H 4FBY_W 3PRQ_H 3KZI_H 1S5L_h 3A0H_H 3ARC_H ....
Probab=20.57 E-value=2.3e+02 Score=17.71 Aligned_cols=26 Identities=12% Similarity=0.326 Sum_probs=10.2
Q ss_pred cccchhH--HHHHHHHHHHHHHHHHHHH
Q 029203 13 TNIGLGY--SIAIALGFLVLLSTVLLAS 38 (197)
Q Consensus 13 ~~~~~~~--~I~i~i~~~vli~~i~l~~ 38 (197)
..-|||- .++++.+.+.++.++++-+
T Consensus 18 VaPGWGTtplM~~~m~lf~vfl~iiL~I 45 (52)
T PF00737_consen 18 VAPGWGTTPLMGVFMALFAVFLLIILEI 45 (52)
T ss_dssp -BSTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 3345554 3344333333333333333
No 402
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=20.51 E-value=86 Score=21.66 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhee
Q 029203 20 SIAIALGFLVLLSTVLLASYICC 42 (197)
Q Consensus 20 ~I~i~i~~~vli~~i~l~~~~~~ 42 (197)
.+++++|+.++++..++..+|..
T Consensus 53 t~g~~~g~~~~~~~~~l~~~Yv~ 75 (91)
T PF04341_consen 53 TLGIVLGLGQIVFAWVLTWLYVR 75 (91)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 403
>PRK10220 hypothetical protein; Provisional
Probab=20.38 E-value=75 Score=23.11 Aligned_cols=26 Identities=31% Similarity=0.704 Sum_probs=13.6
Q ss_pred CccccccccccCCc-ceeecCCCCCcc
Q 029203 125 TTCSICLCEYKDLE-MLRMMPECRHYF 150 (197)
Q Consensus 125 ~~CaICL~~~~~~~-~vr~l~~C~H~F 150 (197)
..|+-|-.+|.=.+ ...+.|.|+|-|
T Consensus 4 P~CP~C~seytY~d~~~~vCpeC~hEW 30 (111)
T PRK10220 4 PHCPKCNSEYTYEDNGMYICPECAHEW 30 (111)
T ss_pred CcCCCCCCcceEcCCCeEECCcccCcC
Confidence 45777777765222 233444455543
No 404
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.33 E-value=68 Score=26.40 Aligned_cols=12 Identities=25% Similarity=0.794 Sum_probs=8.8
Q ss_pred CCCCCcccCCCC
Q 029203 161 LNGSCPVCRNSP 172 (197)
Q Consensus 161 ~~~tCPlCR~~l 172 (197)
+-..||+|++.=
T Consensus 207 NAPiCPlCK~Ks 218 (230)
T PF10146_consen 207 NAPICPLCKAKS 218 (230)
T ss_pred CCCCCccccccc
Confidence 345899998754
No 405
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=20.31 E-value=1.4e+02 Score=23.88 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 029203 18 GYSIAIALGFLVLLSTVLLASY 39 (197)
Q Consensus 18 ~~~I~i~i~~~vli~~i~l~~~ 39 (197)
++.++++++++++++.+++.+-
T Consensus 55 ~~~~Gili~~~vii~~li~~~~ 76 (200)
T PF05473_consen 55 GILIGILITIFVIIATLIFAVP 76 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4577777777777776665443
No 406
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=20.30 E-value=1.3e+02 Score=21.49 Aligned_cols=17 Identities=18% Similarity=0.096 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029203 22 AIALGFLVLLSTVLLAS 38 (197)
Q Consensus 22 ~i~i~~~vli~~i~l~~ 38 (197)
+.++.|+++++++..++
T Consensus 4 ~~~i~Flil~~~l~~~~ 20 (132)
T PF00430_consen 4 WQLINFLILFFLLNKFL 20 (132)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444333333
No 407
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=20.11 E-value=2.8e+02 Score=20.09 Aligned_cols=20 Identities=10% Similarity=0.120 Sum_probs=10.0
Q ss_pred cchhHHHHHHHHHHHHHHHH
Q 029203 15 IGLGYSIAIALGFLVLLSTV 34 (197)
Q Consensus 15 ~~~~~~I~i~i~~~vli~~i 34 (197)
....|++++++.++..+..+
T Consensus 14 s~k~yviGFiLSliLT~i~F 33 (109)
T PRK10582 14 SVKTYMTGFILSIILTVIPF 33 (109)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444433
No 408
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.04 E-value=1.6e+02 Score=19.82 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHhheecccc
Q 029203 24 ALGFLVLLSTVLLASYICCRRNN 46 (197)
Q Consensus 24 ~i~~~vli~~i~l~~~~~~~~~~ 46 (197)
.+++++++.+..-+-|+..++.-
T Consensus 7 tFg~Fllvi~gMsiG~I~krk~I 29 (77)
T COG2991 7 TFGIFLLVIAGMSIGYIFKRKSI 29 (77)
T ss_pred HHHHHHHHHHHHhHhhheecccc
Confidence 33444433433444455544433
No 409
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=20.03 E-value=87 Score=26.04 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=21.5
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhh
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCC 154 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~C 154 (197)
.....+|+.|-. .....-..|.|||.+|.|=
T Consensus 306 ~~tS~~C~~cg~---~~~r~~~C~~cg~~~~rD~ 336 (364)
T COG0675 306 YYTSKTCPCCGH---LSGRLFKCPRCGFVHDRDV 336 (364)
T ss_pred CCCcccccccCC---ccceeEECCCCCCeehhhH
Confidence 455679999988 2233445566999999983
No 410
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=20.02 E-value=1e+02 Score=17.71 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=23.4
Q ss_pred CCccccccccccCCc-ceeecCCCCCccchhhHHH
Q 029203 124 NTTCSICLCEYKDLE-MLRMMPECRHYFHLCCVDA 157 (197)
Q Consensus 124 ~~~CaICL~~~~~~~-~vr~l~~C~H~FH~~CI~~ 157 (197)
...|.+|.+.+.... .++-. .|+=..|..|...
T Consensus 11 ~~~C~~C~~~i~~~~~~~~C~-~C~~~~H~~C~~~ 44 (49)
T smart00109 11 PTKCCVCRKSIWGSFQGLRCS-WCKVKCHKKCAEK 44 (49)
T ss_pred CCCccccccccCcCCCCcCCC-CCCchHHHHHHhh
Confidence 567999988876432 23333 4899999999875
Done!