Query 029203
Match_columns 197
No_of_seqs 163 out of 1615
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 14:50:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029203.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029203hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.8 3.9E-20 1.4E-24 129.8 7.5 81 88-174 9-89 (91)
2 1x4j_A Ring finger protein 38; 99.8 3.2E-19 1.1E-23 120.5 3.3 68 101-175 6-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.7 1.3E-17 4.3E-22 105.8 4.7 52 122-173 3-54 (55)
4 2ect_A Ring finger protein 126 99.7 5E-17 1.7E-21 110.3 7.0 60 120-180 11-70 (78)
5 2kiz_A E3 ubiquitin-protein li 99.7 8.6E-17 2.9E-21 106.6 6.6 54 120-174 10-63 (69)
6 2ep4_A Ring finger protein 24; 99.7 1.4E-16 4.8E-21 107.0 6.4 54 120-174 11-64 (74)
7 2ecl_A Ring-box protein 2; RNF 99.6 8.6E-17 2.9E-21 110.4 4.4 52 123-174 14-76 (81)
8 2ecm_A Ring finger and CHY zin 99.6 5.5E-16 1.9E-20 98.1 4.6 51 122-173 3-54 (55)
9 3ng2_A RNF4, snurf, ring finge 99.6 9.5E-16 3.2E-20 101.9 4.3 57 120-177 6-66 (71)
10 1v87_A Deltex protein 2; ring- 99.6 2.1E-15 7.4E-20 109.3 6.5 53 124-177 25-97 (114)
11 2d8s_A Cellular modulator of i 99.6 2.5E-15 8.4E-20 103.0 5.8 55 120-176 11-72 (80)
12 2ea6_A Ring finger protein 4; 99.6 2.4E-15 8.3E-20 99.1 5.0 54 120-174 11-68 (69)
13 3dpl_R Ring-box protein 1; ubi 99.6 1.9E-15 6.6E-20 108.8 4.6 50 123-173 36-100 (106)
14 2xeu_A Ring finger protein 4; 99.5 2.1E-15 7.3E-20 98.0 2.9 53 123-176 2-58 (64)
15 2d8t_A Dactylidin, ring finger 99.5 5E-15 1.7E-19 98.8 2.1 54 120-177 11-64 (71)
16 1chc_A Equine herpes virus-1 r 99.5 1.7E-14 5.8E-19 95.1 4.1 49 122-173 3-51 (68)
17 2djb_A Polycomb group ring fin 99.5 4E-14 1.4E-18 94.6 6.0 54 121-177 12-65 (72)
18 2ecn_A Ring finger protein 141 99.5 1.2E-14 4E-19 96.5 2.9 50 121-175 12-61 (70)
19 4a0k_B E3 ubiquitin-protein li 99.5 4.7E-15 1.6E-19 108.5 0.6 50 123-173 47-111 (117)
20 2ct2_A Tripartite motif protei 99.5 9E-14 3.1E-18 95.9 6.6 57 120-177 11-71 (88)
21 2ysl_A Tripartite motif-contai 99.4 2.9E-13 9.9E-18 90.2 6.1 52 121-176 17-71 (73)
22 2csy_A Zinc finger protein 183 99.4 1.6E-13 5.5E-18 93.6 4.9 50 120-173 11-60 (81)
23 2ecy_A TNF receptor-associated 99.4 2.6E-13 9E-18 89.0 5.6 51 121-175 12-63 (66)
24 2yur_A Retinoblastoma-binding 99.4 3E-13 1E-17 90.9 5.4 53 120-175 11-65 (74)
25 4ap4_A E3 ubiquitin ligase RNF 99.4 9.9E-14 3.4E-18 102.3 3.4 56 121-177 4-63 (133)
26 2ct0_A Non-SMC element 1 homol 99.4 5.8E-13 2E-17 89.6 6.6 51 121-174 12-64 (74)
27 4ayc_A E3 ubiquitin-protein li 99.4 2E-13 7E-18 102.4 3.5 48 124-175 53-100 (138)
28 2ecv_A Tripartite motif-contai 99.4 1.2E-12 4.1E-17 89.3 6.6 54 121-178 16-75 (85)
29 2ecw_A Tripartite motif-contai 99.4 9.6E-13 3.3E-17 89.8 5.9 53 121-177 16-74 (85)
30 1t1h_A Gspef-atpub14, armadill 99.4 5.7E-13 1.9E-17 90.1 4.6 53 121-177 5-58 (78)
31 2egp_A Tripartite motif-contai 99.4 2.9E-13 9.7E-18 91.6 3.0 54 120-177 8-68 (79)
32 3lrq_A E3 ubiquitin-protein li 99.3 4.7E-13 1.6E-17 95.1 3.1 52 123-177 21-73 (100)
33 1g25_A CDK-activating kinase a 99.3 1.1E-12 3.8E-17 85.7 4.6 53 124-177 3-58 (65)
34 2ysj_A Tripartite motif-contai 99.3 2.3E-12 7.9E-17 83.5 5.7 45 120-168 16-63 (63)
35 2y43_A E3 ubiquitin-protein li 99.3 7E-13 2.4E-17 93.7 3.4 50 124-176 22-71 (99)
36 4ap4_A E3 ubiquitin ligase RNF 99.3 5.4E-13 1.9E-17 98.3 2.4 55 121-176 69-127 (133)
37 2ecj_A Tripartite motif-contai 99.3 2.8E-12 9.4E-17 81.6 5.2 45 120-168 11-58 (58)
38 2ckl_B Ubiquitin ligase protei 99.3 1.9E-12 6.7E-17 99.7 4.6 79 92-173 21-101 (165)
39 2ckl_A Polycomb group ring fin 99.3 1.6E-12 5.6E-17 93.3 3.8 50 123-175 14-63 (108)
40 3fl2_A E3 ubiquitin-protein li 99.3 4.1E-12 1.4E-16 93.4 5.0 48 123-174 51-99 (124)
41 3ztg_A E3 ubiquitin-protein li 99.3 6.8E-12 2.3E-16 87.3 5.5 51 120-173 9-61 (92)
42 1jm7_A BRCA1, breast cancer ty 99.2 4.9E-12 1.7E-16 91.0 4.9 51 124-178 21-74 (112)
43 1z6u_A NP95-like ring finger p 99.2 1.6E-11 5.4E-16 93.5 4.7 49 123-175 77-126 (150)
44 3hct_A TNF receptor-associated 99.1 1E-11 3.6E-16 90.5 2.3 51 121-175 15-66 (118)
45 1rmd_A RAG1; V(D)J recombinati 99.1 1.6E-11 5.6E-16 89.0 3.3 50 124-177 23-73 (116)
46 2kre_A Ubiquitin conjugation f 99.1 6.1E-11 2.1E-15 84.3 5.6 53 120-176 25-77 (100)
47 2kr4_A Ubiquitin conjugation f 99.1 4.4E-11 1.5E-15 82.5 4.6 52 120-175 10-61 (85)
48 1e4u_A Transcriptional repress 99.1 8.9E-11 3.1E-15 79.7 6.0 57 120-177 7-65 (78)
49 3l11_A E3 ubiquitin-protein li 99.1 1E-11 3.5E-16 90.0 1.4 48 122-173 13-61 (115)
50 2vje_A E3 ubiquitin-protein li 99.1 2.5E-11 8.4E-16 79.3 2.2 49 122-173 6-56 (64)
51 1wgm_A Ubiquitin conjugation f 99.1 1.2E-10 4.2E-15 82.4 5.9 52 121-176 19-71 (98)
52 1bor_A Transcription factor PM 99.1 4.6E-11 1.6E-15 75.9 3.2 48 121-175 3-50 (56)
53 2y1n_A E3 ubiquitin-protein li 99.1 6.7E-11 2.3E-15 102.3 4.4 49 122-174 330-379 (389)
54 3k1l_B Fancl; UBC, ring, RWD, 99.1 3.6E-11 1.2E-15 101.9 2.5 53 121-173 305-372 (381)
55 1jm7_B BARD1, BRCA1-associated 99.1 5.4E-11 1.8E-15 86.6 3.1 50 124-179 22-72 (117)
56 3knv_A TNF receptor-associated 99.1 4.3E-11 1.5E-15 90.1 2.2 51 121-175 28-79 (141)
57 2vje_B MDM4 protein; proto-onc 99.0 5.1E-11 1.8E-15 77.5 2.0 50 121-172 4-54 (63)
58 1vyx_A ORF K3, K3RING; zinc-bi 99.0 4.4E-10 1.5E-14 72.5 4.4 49 121-173 3-58 (60)
59 4ic3_A E3 ubiquitin-protein li 98.9 2.6E-10 9E-15 76.4 1.8 42 124-173 24-66 (74)
60 2yu4_A E3 SUMO-protein ligase 98.9 4.6E-10 1.6E-14 78.7 2.2 51 121-174 4-63 (94)
61 2c2l_A CHIP, carboxy terminus 98.9 8E-10 2.7E-14 90.8 3.5 53 120-176 204-257 (281)
62 3hcs_A TNF receptor-associated 98.9 7.2E-10 2.4E-14 85.5 2.3 51 121-175 15-66 (170)
63 1wim_A KIAA0161 protein; ring 98.8 1E-09 3.5E-14 76.7 2.9 49 122-171 3-61 (94)
64 2ea5_A Cell growth regulator w 98.8 4.8E-09 1.7E-13 69.2 4.5 47 120-174 11-58 (68)
65 2ecg_A Baculoviral IAP repeat- 98.8 3.4E-09 1.2E-13 71.0 2.9 43 124-174 25-68 (75)
66 2f42_A STIP1 homology and U-bo 98.7 5.4E-09 1.9E-13 81.5 2.7 52 120-175 102-154 (179)
67 2yho_A E3 ubiquitin-protein li 98.6 7.8E-09 2.7E-13 70.1 1.4 43 124-174 18-61 (79)
68 2bay_A PRE-mRNA splicing facto 98.6 1.4E-08 4.6E-13 65.6 1.8 51 124-177 3-53 (61)
69 3htk_C E3 SUMO-protein ligase 98.6 1E-08 3.5E-13 84.1 1.1 55 121-178 178-236 (267)
70 3t6p_A Baculoviral IAP repeat- 98.5 2.7E-08 9.2E-13 85.1 1.1 43 123-173 294-337 (345)
71 3nw0_A Non-structural maintena 98.3 1.3E-06 4.4E-11 71.0 6.4 47 123-172 179-227 (238)
72 3vk6_A E3 ubiquitin-protein li 98.2 7.7E-07 2.6E-11 62.3 3.4 45 126-173 3-48 (101)
73 2lri_C Autoimmune regulator; Z 96.8 0.0015 5.2E-08 42.3 4.5 53 121-177 9-65 (66)
74 1wil_A KIAA1045 protein; ring 95.4 0.057 2E-06 36.4 6.5 36 121-158 12-47 (89)
75 2jun_A Midline-1; B-BOX, TRIM, 95.1 0.015 5.1E-07 40.2 3.2 34 124-158 3-36 (101)
76 2k1k_A Ephrin type-A receptor 94.5 0.061 2.1E-06 30.8 4.2 27 17-43 10-36 (38)
77 2jwa_A Receptor tyrosine-prote 94.2 0.068 2.3E-06 31.6 4.0 31 15-46 9-39 (44)
78 1mm2_A MI2-beta; PHD, zinc fin 93.3 0.033 1.1E-06 35.2 1.6 49 121-173 6-58 (61)
79 2l5u_A Chromodomain-helicase-D 93.1 0.066 2.3E-06 33.7 2.9 47 120-170 7-57 (61)
80 2ysm_A Myeloid/lymphoid or mix 92.6 0.051 1.7E-06 38.3 2.0 49 120-169 3-55 (111)
81 2k9y_A Ephrin type-A receptor 92.5 0.25 8.5E-06 28.4 4.6 13 19-31 15-27 (41)
82 2ko5_A Ring finger protein Z; 92.4 0.11 3.9E-06 35.6 3.4 52 121-178 25-76 (99)
83 2l2t_A Receptor tyrosine-prote 92.1 0.23 7.9E-06 29.3 4.0 22 19-40 12-33 (44)
84 1we9_A PHD finger family prote 91.7 0.055 1.9E-06 34.3 1.1 50 121-171 3-58 (64)
85 2klu_A T-cell surface glycopro 91.2 0.22 7.4E-06 31.9 3.5 22 25-46 15-36 (70)
86 3o36_A Transcription intermedi 91.2 0.059 2E-06 41.4 1.1 46 123-172 3-52 (184)
87 2ks1_B Epidermal growth factor 90.9 0.18 6.1E-06 29.8 2.7 15 20-34 14-28 (44)
88 1f62_A Transcription factor WS 90.9 0.13 4.3E-06 31.0 2.1 44 126-170 2-49 (51)
89 3u5n_A E3 ubiquitin-protein li 90.9 0.07 2.4E-06 41.8 1.2 48 121-172 4-55 (207)
90 2yt5_A Metal-response element- 89.5 0.088 3E-06 33.5 0.6 52 121-172 3-62 (66)
91 2yql_A PHD finger protein 21A; 89.3 0.08 2.7E-06 32.7 0.2 47 120-170 5-55 (56)
92 3lqh_A Histone-lysine N-methyl 89.2 0.18 6E-06 39.0 2.2 48 124-171 2-63 (183)
93 3v43_A Histone acetyltransfera 88.9 0.13 4.4E-06 36.4 1.2 45 126-170 63-111 (112)
94 2lbm_A Transcriptional regulat 88.8 0.64 2.2E-05 34.4 4.9 46 121-170 60-116 (142)
95 2l43_A N-teminal domain from h 88.7 0.16 5.6E-06 34.4 1.5 58 121-178 22-82 (88)
96 3ql9_A Transcriptional regulat 88.1 0.73 2.5E-05 33.5 4.8 47 121-171 54-111 (129)
97 2lv9_A Histone-lysine N-methyl 88.1 0.25 8.5E-06 34.1 2.2 47 122-170 26-75 (98)
98 2k16_A Transcription initiatio 87.7 0.11 3.9E-06 33.8 0.2 51 122-173 16-70 (75)
99 1fp0_A KAP-1 corepressor; PHD 87.0 0.63 2.1E-05 31.6 3.6 48 120-171 21-72 (88)
100 2ku3_A Bromodomain-containing 86.3 0.34 1.2E-05 31.4 1.9 51 120-170 12-65 (71)
101 1wep_A PHF8; structural genomi 86.1 1.3 4.4E-05 29.0 4.8 52 121-174 9-66 (79)
102 1xwh_A Autoimmune regulator; P 85.8 0.23 8E-06 31.6 0.9 48 121-172 5-56 (66)
103 2xb1_A Pygopus homolog 2, B-ce 84.3 0.23 7.8E-06 34.8 0.3 51 124-174 3-64 (105)
104 3v43_A Histone acetyltransfera 84.0 1.9 6.6E-05 30.1 5.2 47 123-169 4-62 (112)
105 2ro1_A Transcription intermedi 83.9 0.33 1.1E-05 37.5 1.1 45 124-172 2-50 (189)
106 1wem_A Death associated transc 83.8 0.6 2E-05 30.4 2.2 50 123-174 15-73 (76)
107 2puy_A PHD finger protein 21A; 83.7 0.29 9.9E-06 30.5 0.6 46 123-172 4-53 (60)
108 1iij_A ERBB-2 receptor protein 83.2 0.53 1.8E-05 26.3 1.5 25 20-45 10-34 (35)
109 2vpb_A Hpygo1, pygopus homolog 83.1 0.95 3.2E-05 28.8 2.9 36 121-156 5-41 (65)
110 3m62_A Ubiquitin conjugation f 83.0 0.72 2.5E-05 44.1 3.2 52 120-175 887-939 (968)
111 2e6r_A Jumonji/ARID domain-con 82.9 0.34 1.2E-05 33.0 0.8 49 122-171 14-66 (92)
112 1y02_A CARP2, FYVE-ring finger 82.8 0.21 7E-06 36.0 -0.4 50 121-170 16-65 (120)
113 2kgg_A Histone demethylase jar 81.2 1.5 5.2E-05 26.3 3.2 44 126-169 4-52 (52)
114 2ri7_A Nucleosome-remodeling f 81.2 0.69 2.4E-05 34.9 2.0 49 121-170 5-58 (174)
115 2yw8_A RUN and FYVE domain-con 81.1 1.3 4.3E-05 29.4 3.1 37 122-158 17-53 (82)
116 1wev_A Riken cDNA 1110020M19; 80.9 0.32 1.1E-05 32.9 0.0 50 123-172 15-73 (88)
117 1wfk_A Zinc finger, FYVE domai 80.9 1.7 5.8E-05 29.2 3.7 53 121-173 6-65 (88)
118 1z2q_A LM5-1; membrane protein 80.7 1.3 4.6E-05 29.4 3.1 38 121-158 18-55 (84)
119 2kwj_A Zinc finger protein DPF 80.4 0.67 2.3E-05 32.7 1.6 45 125-169 2-59 (114)
120 2l2t_A Receptor tyrosine-prote 79.8 1.9 6.6E-05 25.2 3.2 29 21-49 10-39 (44)
121 4gne_A Histone-lysine N-methyl 79.7 2.2 7.6E-05 29.8 4.1 50 120-175 11-66 (107)
122 3shb_A E3 ubiquitin-protein li 79.1 0.38 1.3E-05 31.8 -0.1 44 126-170 28-76 (77)
123 1x4u_A Zinc finger, FYVE domai 79.0 1.6 5.3E-05 29.0 3.0 37 121-157 11-47 (84)
124 3t7l_A Zinc finger FYVE domain 79.0 1.2 4E-05 30.1 2.4 37 123-159 19-55 (90)
125 1joc_A EEA1, early endosomal a 78.5 1.2 3.9E-05 32.1 2.4 36 122-157 67-102 (125)
126 2klu_A T-cell surface glycopro 77.2 5.6 0.00019 25.3 4.9 30 19-48 12-41 (70)
127 2e6s_A E3 ubiquitin-protein li 76.7 0.64 2.2E-05 30.6 0.5 45 125-170 27-76 (77)
128 1weo_A Cellulose synthase, cat 76.6 6.4 0.00022 26.6 5.4 52 122-173 14-69 (93)
129 1wew_A DNA-binding family prot 76.2 1.3 4.5E-05 29.0 2.0 51 122-173 14-74 (78)
130 2k21_A Potassium voltage-gated 76.2 2.6 9E-05 30.4 3.6 33 13-45 48-80 (138)
131 3asl_A E3 ubiquitin-protein li 75.8 0.75 2.6E-05 29.6 0.7 44 126-170 20-68 (70)
132 1vfy_A Phosphatidylinositol-3- 75.3 2.3 7.8E-05 27.4 2.9 33 125-157 12-44 (73)
133 1wee_A PHD finger family prote 74.5 0.6 2.1E-05 30.1 -0.1 51 122-174 14-69 (72)
134 2ks1_B Epidermal growth factor 73.3 1.4 4.7E-05 25.9 1.3 21 10-30 8-28 (44)
135 1weu_A Inhibitor of growth fam 73.2 3.7 0.00013 27.9 3.6 46 122-172 34-86 (91)
136 1wen_A Inhibitor of growth fam 72.9 5 0.00017 25.7 4.1 47 121-172 13-66 (71)
137 2l34_A TYRO protein tyrosine k 72.8 5.6 0.00019 21.7 3.6 26 17-42 6-31 (33)
138 1z60_A TFIIH basal transcripti 72.3 2.4 8.3E-05 26.4 2.3 42 125-168 16-58 (59)
139 2k1a_A Integrin alpha-IIB; sin 70.9 9.2 0.00031 22.0 4.5 29 10-39 4-32 (42)
140 1dvp_A HRS, hepatocyte growth 70.8 2.2 7.5E-05 33.4 2.4 35 124-158 161-195 (220)
141 3zyq_A Hepatocyte growth facto 70.5 2.4 8E-05 33.5 2.5 36 123-158 163-198 (226)
142 3a1b_A DNA (cytosine-5)-methyl 70.2 5.7 0.0002 29.8 4.4 47 120-170 75-133 (159)
143 2knc_A Integrin alpha-IIB; tra 70.0 16 0.00054 22.3 5.6 25 14-39 10-34 (54)
144 3o70_A PHD finger protein 13; 69.5 1.4 4.7E-05 28.2 0.8 49 120-170 15-66 (68)
145 3ask_A E3 ubiquitin-protein li 67.4 1.6 5.3E-05 34.8 0.8 45 125-170 175-224 (226)
146 2ysm_A Myeloid/lymphoid or mix 66.8 1.1 3.7E-05 31.3 -0.2 45 126-171 56-104 (111)
147 2pv0_B DNA (cytosine-5)-methyl 65.4 7 0.00024 33.5 4.5 48 120-171 89-148 (386)
148 1zbd_B Rabphilin-3A; G protein 64.4 4 0.00014 29.6 2.5 35 122-156 53-88 (134)
149 2cs3_A Protein C14ORF4, MY039 64.2 7.9 0.00027 25.7 3.6 42 120-161 11-52 (93)
150 3mpx_A FYVE, rhogef and PH dom 64.0 1.4 4.9E-05 37.6 0.0 51 122-172 373-430 (434)
151 1wyh_A SLIM 2, skeletal muscle 63.9 8.3 0.00028 23.9 3.8 42 124-175 5-46 (72)
152 3mjh_B Early endosome antigen 63.0 0.79 2.7E-05 25.4 -1.2 18 123-140 4-21 (34)
153 2cu8_A Cysteine-rich protein 2 62.2 12 0.0004 23.6 4.3 42 123-175 8-49 (76)
154 3c6w_A P28ING5, inhibitor of g 62.0 2.6 8.8E-05 26.1 0.9 44 122-170 7-57 (59)
155 1x4k_A Skeletal muscle LIM-pro 61.5 6.2 0.00021 24.5 2.8 42 124-175 5-46 (72)
156 2vnf_A ING 4, P29ING4, inhibit 61.2 2.2 7.6E-05 26.4 0.5 44 122-170 8-58 (60)
157 2l9u_A Receptor tyrosine-prote 60.7 10 0.00035 20.9 3.1 26 17-42 6-31 (40)
158 2l8s_A Integrin alpha-1; trans 59.8 24 0.00081 21.4 5.0 25 14-39 7-31 (54)
159 1g47_A Pinch protein; LIM doma 58.8 8.9 0.0003 24.1 3.2 45 121-175 8-52 (77)
160 2kwj_A Zinc finger protein DPF 58.4 1.5 5.1E-05 30.9 -0.8 45 126-171 60-108 (114)
161 1x4l_A Skeletal muscle LIM-pro 57.9 15 0.0005 22.7 4.1 43 124-176 5-49 (72)
162 2rsd_A E3 SUMO-protein ligase 57.6 1.4 4.9E-05 28.0 -0.9 47 123-170 9-64 (68)
163 1x61_A Thyroid receptor intera 56.7 13 0.00044 23.0 3.7 40 124-173 5-44 (72)
164 2g6q_A Inhibitor of growth pro 56.7 3.2 0.00011 25.9 0.7 44 122-170 9-59 (62)
165 2k1k_A Ephrin type-A receptor 56.3 22 0.00076 19.8 4.2 24 12-35 9-32 (38)
166 3i2d_A E3 SUMO-protein ligase 55.9 7 0.00024 33.3 2.9 48 125-175 250-301 (371)
167 3f6q_B LIM and senescent cell 55.8 7.2 0.00024 24.0 2.3 43 123-175 10-52 (72)
168 2co8_A NEDD9 interacting prote 55.8 15 0.00052 23.6 4.0 44 122-176 13-56 (82)
169 3hd7_A Vesicle-associated memb 55.7 9.9 0.00034 25.5 3.1 7 35-41 84-90 (91)
170 1afo_A Glycophorin A; integral 55.3 11 0.00038 21.3 2.7 11 34-44 26-36 (40)
171 2knc_B Integrin beta-3; transm 54.9 13 0.00044 24.4 3.5 16 17-32 11-26 (79)
172 2d8v_A Zinc finger FYVE domain 54.5 10 0.00034 24.1 2.7 34 120-158 4-38 (67)
173 4fo9_A E3 SUMO-protein ligase 54.5 7 0.00024 33.2 2.6 48 125-175 216-267 (360)
174 2zet_C Melanophilin; complex, 54.5 6.7 0.00023 29.1 2.3 47 122-170 66-116 (153)
175 1zfo_A LAsp-1; LIM domain, zin 54.1 7.9 0.00027 20.4 1.9 28 125-155 4-31 (31)
176 1iml_A CRIP, cysteine rich int 53.5 6.8 0.00023 24.7 1.9 12 125-136 28-39 (76)
177 2dj7_A Actin-binding LIM prote 52.9 17 0.00058 23.3 3.9 41 122-173 13-53 (80)
178 2gmg_A Hypothetical protein PF 52.6 3.6 0.00012 28.7 0.4 25 145-174 72-96 (105)
179 1x63_A Skeletal muscle LIM-pro 51.8 14 0.00048 23.5 3.3 42 124-175 15-56 (82)
180 1tac_A TAT protein; transcript 51.5 9.5 0.00032 25.4 2.4 19 142-168 19-37 (86)
181 1a7i_A QCRP2 (LIM1); LIM domai 50.0 5.2 0.00018 25.7 0.9 41 124-175 7-47 (81)
182 3o7a_A PHD finger protein 13 v 49.8 3.9 0.00013 24.4 0.3 41 129-170 8-51 (52)
183 2o35_A Hypothetical protein DU 49.6 6.5 0.00022 27.1 1.4 12 149-160 42-53 (105)
184 3fyb_A Protein of unknown func 49.5 6.5 0.00022 27.0 1.4 12 149-160 41-52 (104)
185 2l8s_A Integrin alpha-1; trans 47.6 29 0.00099 21.0 3.9 7 36-42 25-31 (54)
186 2d8x_A Protein pinch; LIM doma 47.3 18 0.0006 22.2 3.2 40 124-175 5-44 (70)
187 2d8y_A Eplin protein; LIM doma 47.2 23 0.00077 23.1 3.9 42 123-175 14-55 (91)
188 2pk7_A Uncharacterized protein 46.5 4.5 0.00015 25.9 0.2 18 156-173 2-19 (69)
189 1x64_A Alpha-actinin-2 associa 46.3 44 0.0015 21.5 5.2 42 122-175 23-64 (89)
190 1x68_A FHL5 protein; four-and- 45.6 22 0.00077 22.2 3.5 40 124-173 5-46 (76)
191 1nyp_A Pinch protein; LIM doma 45.1 23 0.00078 21.4 3.4 40 124-175 5-44 (66)
192 1x62_A C-terminal LIM domain p 44.4 15 0.0005 23.3 2.5 40 122-173 13-52 (79)
193 2cor_A Pinch protein; LIM doma 44.0 34 0.0012 21.6 4.3 43 121-175 12-54 (79)
194 2d8z_A Four and A half LIM dom 44.0 21 0.00072 21.8 3.1 41 124-176 5-45 (70)
195 1q55_A EP-cadherin, C-cadherin 43.1 5 0.00017 37.9 0.0 24 13-36 700-723 (880)
196 2jny_A Uncharacterized BCR; st 43.1 4.4 0.00015 25.9 -0.3 18 156-173 4-21 (67)
197 2l3k_A Rhombotin-2, linker, LI 42.5 16 0.00055 25.4 2.7 44 123-170 35-78 (123)
198 1x4i_A Inhibitor of growth pro 41.4 16 0.00056 23.1 2.3 45 123-172 5-56 (70)
199 2jvx_A NF-kappa-B essential mo 40.1 5.5 0.00019 20.9 -0.1 11 162-172 3-13 (28)
200 1wd2_A Ariadne-1 protein homol 38.8 4.9 0.00017 24.9 -0.6 38 124-161 6-47 (60)
201 1yuz_A Nigerythrin; rubrythrin 38.5 16 0.00054 28.2 2.2 25 140-171 171-195 (202)
202 2cup_A Skeletal muscle LIM-pro 37.8 38 0.0013 22.2 3.9 46 124-174 33-78 (101)
203 3kqi_A GRC5, PHD finger protei 37.7 12 0.00043 23.9 1.3 47 124-172 10-62 (75)
204 2jne_A Hypothetical protein YF 37.6 11 0.00037 25.9 0.9 39 125-172 33-71 (101)
205 3pwf_A Rubrerythrin; non heme 36.8 18 0.00062 27.1 2.2 25 139-170 137-161 (170)
206 2jmi_A Protein YNG1, ING1 homo 36.7 11 0.00038 25.3 0.9 44 122-170 24-75 (90)
207 2rgt_A Fusion of LIM/homeobox 36.6 17 0.00058 26.7 2.1 39 125-173 66-104 (169)
208 2ehe_A Four and A half LIM dom 36.5 30 0.001 21.9 3.0 41 124-174 15-55 (82)
209 2kpi_A Uncharacterized protein 36.2 3.6 0.00012 25.3 -1.5 18 156-173 4-21 (56)
210 2cur_A Skeletal muscle LIM-pro 35.5 29 0.00099 21.1 2.8 39 124-174 5-43 (69)
211 2dar_A PDZ and LIM domain prot 35.3 31 0.0011 22.3 3.0 42 122-175 23-64 (90)
212 2egq_A FHL1 protein; LIM domai 34.8 35 0.0012 21.2 3.1 42 124-175 15-59 (77)
213 3mi9_C Protein TAT; P-TEFB, HI 34.7 8.3 0.00028 25.7 0.0 12 142-154 19-30 (86)
214 2jmo_A Parkin; IBR, E3 ligase, 34.0 3.2 0.00011 27.2 -2.1 19 145-165 55-73 (80)
215 2jr6_A UPF0434 protein NMA0874 33.6 4.6 0.00016 25.8 -1.4 17 157-173 3-19 (68)
216 2l4z_A DNA endonuclease RBBP8, 32.8 35 0.0012 23.8 3.1 40 123-173 60-99 (123)
217 1rut_X Flinc4, fusion protein 32.2 24 0.00084 26.4 2.4 28 126-155 71-98 (188)
218 1v6g_A Actin binding LIM prote 32.1 42 0.0015 21.1 3.2 38 124-173 15-52 (81)
219 3kv5_D JMJC domain-containing 31.4 11 0.00039 33.1 0.4 49 122-171 35-88 (488)
220 2kdx_A HYPA, hydrogenase/ureas 31.0 20 0.00069 25.0 1.6 25 142-172 75-100 (119)
221 2hf1_A Tetraacyldisaccharide-1 30.3 4.6 0.00016 25.8 -1.8 17 157-173 3-19 (68)
222 2das_A Zinc finger MYM-type pr 29.4 55 0.0019 20.3 3.1 37 123-159 19-56 (62)
223 2lcq_A Putative toxin VAPC6; P 29.0 13 0.00044 27.4 0.2 24 143-172 135-158 (165)
224 2js4_A UPF0434 protein BB2007; 28.9 5 0.00017 25.8 -1.8 17 157-173 3-19 (70)
225 2k9j_B Integrin beta-3; transm 28.6 83 0.0028 17.9 3.7 6 22-27 15-20 (43)
226 2jtn_A LIM domain-binding prot 28.4 24 0.00081 26.3 1.7 46 123-174 86-131 (182)
227 2jrp_A Putative cytoplasmic pr 27.8 27 0.00093 23.0 1.6 15 125-139 3-17 (81)
228 2iyb_E Testin, TESS, TES; LIM 27.5 41 0.0014 20.2 2.5 41 125-175 3-45 (65)
229 3hd7_B Syntaxin-1A; membrane p 26.6 47 0.0016 22.8 2.8 6 18-23 86-91 (109)
230 2ct7_A Ring finger protein 31; 26.5 5.9 0.0002 26.2 -1.9 28 141-168 44-73 (86)
231 1lko_A Rubrerythrin all-iron(I 25.6 24 0.00083 26.8 1.3 26 140-171 155-180 (191)
232 1wig_A KIAA1808 protein; LIM d 25.4 1E+02 0.0036 18.8 4.2 38 124-173 5-42 (73)
233 3arc_H Photosystem II reaction 24.5 1.1E+02 0.0037 19.1 3.8 25 15-39 22-48 (65)
234 2cuq_A Four and A half LIM dom 23.9 59 0.002 20.2 2.8 39 124-174 15-53 (80)
235 1m3v_A FLIN4, fusion of the LI 23.6 62 0.0021 22.2 3.1 52 124-177 32-84 (122)
236 2llm_A Amyloid beta A4 protein 29.1 17 0.00059 21.0 0.0 19 21-39 20-38 (43)
237 2dlo_A Thyroid receptor-intera 23.3 60 0.002 20.3 2.7 41 123-175 14-54 (81)
238 2xjy_A Rhombotin-2; oncoprotei 22.9 54 0.0018 22.6 2.6 11 125-135 30-40 (131)
239 2lk9_A Bone marrow stromal ant 22.7 85 0.0029 17.0 2.7 6 37-42 24-29 (35)
240 1j2o_A FLIN2, fusion of rhombo 22.5 74 0.0025 21.5 3.2 36 123-160 29-65 (114)
241 2ifo_A Inovirus; helical virus 21.8 67 0.0023 18.7 2.4 21 24-44 24-44 (46)
242 1x3h_A Leupaxin; paxillin fami 21.8 83 0.0028 19.5 3.2 40 124-175 15-54 (80)
243 2lat_A Dolichyl-diphosphooligo 21.8 1.1E+02 0.0039 16.9 3.6 16 19-34 8-23 (37)
244 1loi_A Cyclic 3',5'-AMP specif 21.3 5 0.00017 20.0 -2.2 12 149-160 6-17 (26)
245 2k5r_A Uncharacterized protein 21.3 15 0.0005 25.2 -0.7 18 156-173 2-19 (97)
246 2csz_A Synaptotagmin-like prot 21.1 47 0.0016 21.6 1.8 35 121-155 22-57 (76)
247 2akl_A PHNA-like protein PA012 20.1 51 0.0017 23.8 1.9 30 121-150 24-54 (138)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.81 E-value=3.9e-20 Score=129.84 Aligned_cols=81 Identities=31% Similarity=0.656 Sum_probs=70.1
Q ss_pred CCCCcCCCCCHHHHhcCCCeeeccccccCCCCCCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcc
Q 029203 88 DDDNLVVGLDQAVINSYPKFQFTKESVSGNNNSNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPV 167 (197)
Q Consensus 88 ~~~~~~~~l~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPl 167 (197)
.......+++++.++.+|.+.+..... .......|+|||++|..++.++.++ |+|.||..||+.|+..+.+||+
T Consensus 9 ~~~~~~~~~s~~~i~~lp~~~~~~~~~-----~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~ 82 (91)
T 2l0b_A 9 SHMVANPPASKESIDALPEILVTEDHG-----AVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPV 82 (91)
T ss_dssp CCSSCCCCCCHHHHHTSCEEECCTTCS-----SSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTT
T ss_pred CCCcCCCCCCHHHHHhCCCeeeccccc-----ccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcC
Confidence 444567899999999999988876532 3456789999999999999999999 9999999999999999999999
Q ss_pred cCCCCCC
Q 029203 168 CRNSPLP 174 (197)
Q Consensus 168 CR~~l~~ 174 (197)
||..+.+
T Consensus 83 Cr~~~~~ 89 (91)
T 2l0b_A 83 CRCMFPP 89 (91)
T ss_dssp TCCBSSC
T ss_pred cCccCCC
Confidence 9998754
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.2e-19 Score=120.51 Aligned_cols=68 Identities=37% Similarity=1.008 Sum_probs=57.8
Q ss_pred HhcCCCeeeccccccCCCCCCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 101 INSYPKFQFTKESVSGNNNSNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 101 ~~~lp~~~~~~~~~~~~~~~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
++++|...+.... ...+..+|+||+++|..++.++.++ |+|.||..||.+|++.+.+||+||+.+.+.
T Consensus 6 i~~lp~~~~~~~~------~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 6 SGQLPSYRFNPNN------HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CSSCCCEEBCSSS------CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred HhhCCcEEecCcc------ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 4567777775442 3455789999999999999999999 999999999999999999999999988664
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.70 E-value=1.3e-17 Score=105.80 Aligned_cols=52 Identities=40% Similarity=0.941 Sum_probs=47.1
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 173 (197)
++..+|+||+++|.+++.+..++.|+|.||..||.+|++.+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3467999999999999988888779999999999999999999999999874
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=5e-17 Score=110.32 Aligned_cols=60 Identities=35% Similarity=0.742 Sum_probs=52.6
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCCCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTPLSTP 180 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~~~~~ 180 (197)
......+|+||++.|..++.++.++ |+|.||..||.+|++.+.+||+||..+.......+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 3455789999999999999999998 99999999999999999999999999977655443
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=8.6e-17 Score=106.64 Aligned_cols=54 Identities=39% Similarity=0.892 Sum_probs=48.8
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLP 174 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 174 (197)
.......|+||++.|..++.++.++ |+|.||..||.+|+..+.+||+||..+..
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred cCCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 3456789999999999988899999 99999999999999999999999998854
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=107.01 Aligned_cols=54 Identities=33% Similarity=0.865 Sum_probs=48.9
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLP 174 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 174 (197)
.......|+||+++|.+++.+..++ |+|.||..||.+|++.+.+||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 3455789999999999999999998 99999999999999999999999998854
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=8.6e-17 Score=110.39 Aligned_cols=52 Identities=35% Similarity=0.837 Sum_probs=42.7
Q ss_pred CCCccccccccccC-----------CcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCC
Q 029203 123 INTTCSICLCEYKD-----------LEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLP 174 (197)
Q Consensus 123 ~~~~CaICL~~~~~-----------~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 174 (197)
++..|+||+++|.+ ++.++.++.|+|.||.+||++||..+.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45678888888854 45566665699999999999999999999999998754
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.60 E-value=5.5e-16 Score=98.05 Aligned_cols=51 Identities=27% Similarity=0.692 Sum_probs=44.1
Q ss_pred CCCCccccccccccCCc-ceeecCCCCCccchhhHHHHhhCCCCCcccCCCCC
Q 029203 122 NINTTCSICLCEYKDLE-MLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~-~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 173 (197)
....+|+||++.|.+++ .+..++ |+|.||..||.+|+..+.+||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 34679999999997654 567787 9999999999999999999999998763
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.58 E-value=9.5e-16 Score=101.87 Aligned_cols=57 Identities=25% Similarity=0.579 Sum_probs=48.2
Q ss_pred CCCCCCccccccccccCC----cceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCCCC
Q 029203 120 SNNINTTCSICLCEYKDL----EMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTPL 177 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~----~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~~ 177 (197)
...+..+|+||++.|.+. +.+..++ |||.||..||.+|++.+.+||+||..+....+
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 345678999999999764 4556777 99999999999999999999999999876554
No 10
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.58 E-value=2.1e-15 Score=109.35 Aligned_cols=53 Identities=26% Similarity=0.498 Sum_probs=43.1
Q ss_pred CCccccccccccCCc---------------ceeecCCCCCccchhhHHHHh-----hCCCCCcccCCCCCCCCC
Q 029203 124 NTTCSICLCEYKDLE---------------MLRMMPECRHYFHLCCVDAWL-----KLNGSCPVCRNSPLPTPL 177 (197)
Q Consensus 124 ~~~CaICL~~~~~~~---------------~vr~l~~C~H~FH~~CI~~Wl-----~~~~tCPlCR~~l~~~~~ 177 (197)
+.+|+|||++|.++. .++.++ |+|.||..||..|+ ..+.+||+||..+-.+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCC
Confidence 569999999997653 344677 99999999999999 456799999998865433
No 11
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.5e-15 Score=102.96 Aligned_cols=55 Identities=29% Similarity=0.801 Sum_probs=46.1
Q ss_pred CCCCCCccccccccccCCcceeecCCCC-----CccchhhHHHHhhCC--CCCcccCCCCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECR-----HYFHLCCVDAWLKLN--GSCPVCRNSPLPTP 176 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~-----H~FH~~CI~~Wl~~~--~tCPlCR~~l~~~~ 176 (197)
...++..|.|||++|++++.+ ++| |+ |.||.+||++||..+ .+||+||+.+....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 445678999999999988877 588 96 999999999999765 48999999986543
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.4e-15 Score=99.15 Aligned_cols=54 Identities=26% Similarity=0.616 Sum_probs=45.7
Q ss_pred CCCCCCccccccccccCC----cceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCC
Q 029203 120 SNNINTTCSICLCEYKDL----EMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLP 174 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~----~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 174 (197)
...+...|+||++.|.+. ..+..++ |||.||..||..|+..+.+||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 345678999999999864 3456777 99999999999999999999999998754
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.56 E-value=1.9e-15 Score=108.83 Aligned_cols=50 Identities=30% Similarity=0.645 Sum_probs=43.2
Q ss_pred CCCccccccccccCCc---------------ceeecCCCCCccchhhHHHHhhCCCCCcccCCCCC
Q 029203 123 INTTCSICLCEYKDLE---------------MLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~---------------~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 173 (197)
.+..|+||++.|.... .++.++ |+|.||..||++||..+.+||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 4678999999998651 366777 9999999999999999999999999853
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.54 E-value=2.1e-15 Score=97.99 Aligned_cols=53 Identities=26% Similarity=0.630 Sum_probs=45.1
Q ss_pred CCCccccccccccCC----cceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCCC
Q 029203 123 INTTCSICLCEYKDL----EMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTP 176 (197)
Q Consensus 123 ~~~~CaICL~~~~~~----~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~ 176 (197)
+..+|+||++.|.+. +.+..++ |||.||..||.+|++.+.+||+||..+....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 357999999999864 4556777 9999999999999999999999999886543
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=5e-15 Score=98.76 Aligned_cols=54 Identities=28% Similarity=0.535 Sum_probs=45.2
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTPL 177 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~~ 177 (197)
...+...|+||++.+.+. ..++ |+|.||..||..|+..+.+||+||..+....+
T Consensus 11 ~~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPEDFL 64 (71)
T ss_dssp SSSSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHH
T ss_pred cCCCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHhhc
Confidence 345578999999998765 4567 99999999999999999999999998865443
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.49 E-value=1.7e-14 Score=95.10 Aligned_cols=49 Identities=29% Similarity=0.833 Sum_probs=42.7
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 173 (197)
.....|+||++.+.+. +..++ |||.||..||..|+..+.+||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 3467999999998753 46788 9999999999999999999999999874
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=4e-14 Score=94.58 Aligned_cols=54 Identities=24% Similarity=0.404 Sum_probs=45.1
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTPL 177 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~~ 177 (197)
..+...|+||++.|.+. +..++ |||.||..||..|+..+.+||+||..+.....
T Consensus 12 ~~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 12 LTPYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp CCGGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred cCCCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence 44568999999998874 44457 99999999999999999999999998865544
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.2e-14 Score=96.50 Aligned_cols=50 Identities=30% Similarity=0.741 Sum_probs=43.8
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
..+...|+||++.+.+ ..++ |+|.||..||..|+..+.+||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 4557899999999877 5677 999999999999999999999999988643
No 19
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.47 E-value=4.7e-15 Score=108.46 Aligned_cols=50 Identities=32% Similarity=0.689 Sum_probs=1.0
Q ss_pred CCCccccccccccCC-------------c--ceeecCCCCCccchhhHHHHhhCCCCCcccCCCCC
Q 029203 123 INTTCSICLCEYKDL-------------E--MLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 123 ~~~~CaICL~~~~~~-------------~--~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 173 (197)
....|+||+++|.+. + .+..++ |+|.||..||++||..+.+||+||++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 457999999999763 2 233356 9999999999999999999999999864
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=9e-14 Score=95.88 Aligned_cols=57 Identities=21% Similarity=0.522 Sum_probs=47.5
Q ss_pred CCCCCCccccccccccCCcc-eeecCCCCCccchhhHHHHhhCC---CCCcccCCCCCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEM-LRMMPECRHYFHLCCVDAWLKLN---GSCPVCRNSPLPTPL 177 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~-vr~l~~C~H~FH~~CI~~Wl~~~---~tCPlCR~~l~~~~~ 177 (197)
...+..+|+||++.|.+.+. ...++ |||.||..||..|+..+ .+||+||..+....+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRITSL 71 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSST
T ss_pred hccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhH
Confidence 34567899999999998764 56777 99999999999999876 689999998865543
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2.9e-13 Score=90.23 Aligned_cols=52 Identities=25% Similarity=0.466 Sum_probs=42.8
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhh---CCCCCcccCCCCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLK---LNGSCPVCRNSPLPTP 176 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~---~~~tCPlCR~~l~~~~ 176 (197)
..+...|+||++.|.+. ..++ |||.||..||..|++ .+.+||+||..+....
T Consensus 17 ~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBCSSE---EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CccCCEeccCCcccCCe---EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 45578999999998864 4557 999999999999997 4558999999886543
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.6e-13 Score=93.58 Aligned_cols=50 Identities=24% Similarity=0.592 Sum_probs=43.0
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 173 (197)
.......|+||++.|.+. ..++ |||.||..||..|+....+||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 345577999999999764 3577 9999999999999999999999999884
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2.6e-13 Score=88.97 Aligned_cols=51 Identities=22% Similarity=0.421 Sum_probs=42.4
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhh-CCCCCcccCCCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLK-LNGSCPVCRNSPLPT 175 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~-~~~tCPlCR~~l~~~ 175 (197)
..+...|+||++.+.+.. .++ |||.||..||..|+. .+.+||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPK---QTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCCEECTTTCCEESSCC---CCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCcCCCCCCCChHhcCee---ECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 455789999999998763 367 999999999999994 567899999988654
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.40 E-value=3e-13 Score=90.86 Aligned_cols=53 Identities=21% Similarity=0.469 Sum_probs=42.8
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCC--CCCcccCCCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLN--GSCPVCRNSPLPT 175 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~--~tCPlCR~~l~~~ 175 (197)
...+...|+||++.|.+. + .++.|||.||..||..|+..+ .+||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~p--~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDA--V-VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp CSCGGGSCSSSCCCCTTC--E-ECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred cCCCCCCCcCCChHHhCC--e-EcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 345568999999999875 3 355599999999999999865 6899999976543
No 25
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.40 E-value=9.9e-14 Score=102.34 Aligned_cols=56 Identities=25% Similarity=0.598 Sum_probs=47.1
Q ss_pred CCCCCccccccccccCC----cceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCCCC
Q 029203 121 NNINTTCSICLCEYKDL----EMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTPL 177 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~----~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~~ 177 (197)
..+..+|+||++.|.+. +.+..++ |||.||..||.+|++.+.+||+||..+.....
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 4 GSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp -CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 45578999999999764 4557777 99999999999999999999999998866544
No 26
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=5.8e-13 Score=89.63 Aligned_cols=51 Identities=24% Similarity=0.473 Sum_probs=43.0
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCC--CCCcccCCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLN--GSCPVCRNSPLP 174 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~--~tCPlCR~~l~~ 174 (197)
.+...+|+||.+.|..++... . |+|.||..||.+||+.+ .+||+||++...
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C~--~-C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSCE--T-CGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEECS--S-SCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred cCCCCcCcchhhHcccCCccC--C-CCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 345689999999999876544 4 99999999999999887 799999987643
No 27
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.37 E-value=2e-13 Score=102.37 Aligned_cols=48 Identities=27% Similarity=0.734 Sum_probs=41.9
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
+..|+||++.|.++ ..++ |||.||..||..|+..+.+||+||.++...
T Consensus 53 ~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 46899999999764 4677 999999999999999999999999988543
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.2e-12 Score=89.32 Aligned_cols=54 Identities=35% Similarity=0.610 Sum_probs=44.8
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhC------CCCCcccCCCCCCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL------NGSCPVCRNSPLPTPLS 178 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~------~~tCPlCR~~l~~~~~~ 178 (197)
..+...|+||++.|.+. ..++ |||.||..||..|+.. ..+||+||..+....+.
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 75 (85)
T ss_dssp CCCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCC
T ss_pred ccCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcC
Confidence 45578999999999765 4567 9999999999999977 77999999988765443
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.35 E-value=9.6e-13 Score=89.81 Aligned_cols=53 Identities=32% Similarity=0.566 Sum_probs=44.3
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhC------CCCCcccCCCCCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL------NGSCPVCRNSPLPTPL 177 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~------~~tCPlCR~~l~~~~~ 177 (197)
..+...|+||++.|.+. ..++ |+|.||..||..|+.. ..+||+||..+....+
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL 74 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCC
T ss_pred CccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhC
Confidence 45578999999999876 3677 9999999999999987 6689999998865544
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.35 E-value=5.7e-13 Score=90.07 Aligned_cols=53 Identities=21% Similarity=0.382 Sum_probs=44.4
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhC-CCCCcccCCCCCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL-NGSCPVCRNSPLPTPL 177 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~-~~tCPlCR~~l~~~~~ 177 (197)
..+...|+||++.|.+. ..++ |||.||..||..|+.. +.+||+||..+....+
T Consensus 5 ~~~~~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l 58 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAGL 58 (78)
T ss_dssp CSSSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCC
T ss_pred CcccCCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChhhC
Confidence 45678999999999875 3457 9999999999999987 7799999998865443
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.35 E-value=2.9e-13 Score=91.56 Aligned_cols=54 Identities=30% Similarity=0.474 Sum_probs=44.5
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhC-------CCCCcccCCCCCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL-------NGSCPVCRNSPLPTPL 177 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~-------~~tCPlCR~~l~~~~~ 177 (197)
...+...|+||++.|.+. ..++ |||.||..||..|+.. ..+||+||..+....+
T Consensus 8 ~~~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l 68 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHL 68 (79)
T ss_dssp CCCCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGG
T ss_pred hcccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhC
Confidence 345678999999999775 3467 9999999999999986 5689999998865443
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.33 E-value=4.7e-13 Score=95.07 Aligned_cols=52 Identities=25% Similarity=0.566 Sum_probs=43.0
Q ss_pred CCCccccccccccCCcceeecCCCCCccchhhHHHHhhCC-CCCcccCCCCCCCCC
Q 029203 123 INTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLN-GSCPVCRNSPLPTPL 177 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~-~tCPlCR~~l~~~~~ 177 (197)
+...|+||++.|.+. +..++ |||.||..||..|+..+ .+||+||..+....+
T Consensus 21 ~~~~C~IC~~~~~~p--~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l 73 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA--RLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLREL 73 (100)
T ss_dssp HHTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCccCCccccCc--cccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHh
Confidence 357999999999753 44377 99999999999999887 699999999855433
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.33 E-value=1.1e-12 Score=85.69 Aligned_cols=53 Identities=23% Similarity=0.564 Sum_probs=42.5
Q ss_pred CCccccccc-cccCCcce-eecCCCCCccchhhHHHHhhC-CCCCcccCCCCCCCCC
Q 029203 124 NTTCSICLC-EYKDLEML-RMMPECRHYFHLCCVDAWLKL-NGSCPVCRNSPLPTPL 177 (197)
Q Consensus 124 ~~~CaICL~-~~~~~~~v-r~l~~C~H~FH~~CI~~Wl~~-~~tCPlCR~~l~~~~~ 177 (197)
+..|+||++ .|.+.... ..++ |||.||..||.+|+.. ..+||+||..+....+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 568999999 77776543 3466 9999999999999765 4589999998866544
No 34
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=2.3e-12 Score=83.54 Aligned_cols=45 Identities=27% Similarity=0.527 Sum_probs=37.6
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhh---CCCCCccc
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLK---LNGSCPVC 168 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~---~~~tCPlC 168 (197)
...+...|+||++.|.+. ..++ |||.||..||..|++ .+.+||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345578999999999865 4557 999999999999997 45689998
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.32 E-value=7e-13 Score=93.73 Aligned_cols=50 Identities=20% Similarity=0.544 Sum_probs=42.5
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTP 176 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~ 176 (197)
...|+||++.|.+. +..++ |||.||..||..|+..+.+||+||..+....
T Consensus 22 ~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 71 (99)
T 2y43_A 22 LLRCGICFEYFNIA--MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD 71 (99)
T ss_dssp HTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred CCCcccCChhhCCc--CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCChhh
Confidence 57999999999864 44446 9999999999999999999999999886543
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.30 E-value=5.4e-13 Score=98.33 Aligned_cols=55 Identities=25% Similarity=0.609 Sum_probs=45.8
Q ss_pred CCCCCccccccccccCC----cceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCCC
Q 029203 121 NNINTTCSICLCEYKDL----EMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTP 176 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~----~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~ 176 (197)
..+...|+||++.|.+. .....++ |||.||..||++|++.+.+||+||..+..+.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 34567899999999763 3446676 9999999999999999999999999886543
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.8e-12 Score=81.56 Aligned_cols=45 Identities=31% Similarity=0.848 Sum_probs=37.3
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhh---CCCCCccc
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLK---LNGSCPVC 168 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~---~~~tCPlC 168 (197)
...+...|+||++.|.+. ..++ |||.||..||..|+. .+.+||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345578999999999876 4577 999999999999954 56689998
No 38
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.28 E-value=1.9e-12 Score=99.65 Aligned_cols=79 Identities=24% Similarity=0.375 Sum_probs=52.9
Q ss_pred cCCCCCHHHHhcCCCeeecccccc-CCCCCCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhC-CCCCcccC
Q 029203 92 LVVGLDQAVINSYPKFQFTKESVS-GNNNSNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL-NGSCPVCR 169 (197)
Q Consensus 92 ~~~~l~~~~~~~lp~~~~~~~~~~-~~~~~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~-~~tCPlCR 169 (197)
...++....+.+.+.......... ...........|+||++.|.+ .+..++ |||.||..||..|+.. +.+||+||
T Consensus 21 ~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr 97 (165)
T 2ckl_B 21 KTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCR 97 (165)
T ss_dssp CCCCCCHHHHHCCCCCCCCSCCEEC----CCHHHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTC
T ss_pred ccccCCHHHHhcCchhhhccccccccchhhCCCCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCC
Confidence 345566666666554333322110 000122345699999999986 355557 9999999999999987 77899999
Q ss_pred CCCC
Q 029203 170 NSPL 173 (197)
Q Consensus 170 ~~l~ 173 (197)
..+.
T Consensus 98 ~~~~ 101 (165)
T 2ckl_B 98 KKLV 101 (165)
T ss_dssp CBCC
T ss_pred CcCC
Confidence 9884
No 39
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.28 E-value=1.6e-12 Score=93.28 Aligned_cols=50 Identities=24% Similarity=0.567 Sum_probs=42.8
Q ss_pred CCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 123 INTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
+...|+||++.|.+. +..++ |||.||..||..|+..+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA--TTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCc--CEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 467999999999763 54457 999999999999999999999999988653
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.26 E-value=4.1e-12 Score=93.36 Aligned_cols=48 Identities=23% Similarity=0.356 Sum_probs=40.9
Q ss_pred CCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCC-CCcccCCCCCC
Q 029203 123 INTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNG-SCPVCRNSPLP 174 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~-tCPlCR~~l~~ 174 (197)
+...|+||++.|.+. ..++ |||.||..||..|+..+. +||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 357899999999865 4467 999999999999998555 99999998865
No 41
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.25 E-value=6.8e-12 Score=87.31 Aligned_cols=51 Identities=22% Similarity=0.459 Sum_probs=41.7
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCC--CCCcccCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLN--GSCPVCRNSPL 173 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~--~tCPlCR~~l~ 173 (197)
...+...|+||++.|.+. ..++.|||.||..||..|+..+ .+||+||..+.
T Consensus 9 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 445678999999999865 3455599999999999999644 58999999873
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.25 E-value=4.9e-12 Score=90.96 Aligned_cols=51 Identities=29% Similarity=0.585 Sum_probs=42.4
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhCCC---CCcccCCCCCCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNG---SCPVCRNSPLPTPLS 178 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~---tCPlCR~~l~~~~~~ 178 (197)
...|+||++.|.+. ..++ |||.||..||..|+..+. +||+||..+....+.
T Consensus 21 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCB
T ss_pred CCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcC
Confidence 46899999999765 3467 999999999999998654 899999988765543
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.18 E-value=1.6e-11 Score=93.46 Aligned_cols=49 Identities=22% Similarity=0.358 Sum_probs=41.8
Q ss_pred CCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCC-CCcccCCCCCCC
Q 029203 123 INTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNG-SCPVCRNSPLPT 175 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~-tCPlCR~~l~~~ 175 (197)
+...|+||++.|.+. ..++ |||.||..||..|+.... +||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC---EEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 357999999999765 3477 999999999999998765 899999998665
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.15 E-value=1e-11 Score=90.53 Aligned_cols=51 Identities=27% Similarity=0.574 Sum_probs=42.7
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCC-CCcccCCCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNG-SCPVCRNSPLPT 175 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~-tCPlCR~~l~~~ 175 (197)
..+...|+||++.|.+. ..++ |||.||..||..|+.... +||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 15 LESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 44567999999999875 4467 999999999999998765 999999988553
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.14 E-value=1.6e-11 Score=89.04 Aligned_cols=50 Identities=34% Similarity=0.701 Sum_probs=42.1
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhC-CCCCcccCCCCCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL-NGSCPVCRNSPLPTPL 177 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~-~~tCPlCR~~l~~~~~ 177 (197)
...|+||++.|.+. ..++ |||.||..||..|+.. +.+||+||..+....+
T Consensus 23 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 23 SISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCcHhcCc---EEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 57899999998765 3467 9999999999999987 6799999998865444
No 46
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.13 E-value=6.1e-11 Score=84.28 Aligned_cols=53 Identities=9% Similarity=-0.037 Sum_probs=45.5
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTP 176 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~ 176 (197)
...+...|+||++-|.++ ..++ |||.|+..||..|+..+.+||+||..+....
T Consensus 25 ~~p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDP---VRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp SCSTTTBCTTTCSBCSSE---EEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred cCcHhhCCcCccCcccCC---eECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 345678999999999887 4567 9999999999999998899999999886543
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.13 E-value=4.4e-11 Score=82.49 Aligned_cols=52 Identities=10% Similarity=-0.043 Sum_probs=44.9
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
...+...|+||++-|.+. ..++ |||.|+..||..|+..+.+||+||..+...
T Consensus 10 ~~p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDP---VRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp TCCTTTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred cCchheECcccCchhcCC---eECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 345679999999999887 4677 999999999999999889999999987543
No 48
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.12 E-value=8.9e-11 Score=79.72 Aligned_cols=57 Identities=19% Similarity=0.394 Sum_probs=43.9
Q ss_pred CCCCCCccccccccccCCcc-eeecCCCCCccchhhHHHHhhC-CCCCcccCCCCCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEM-LRMMPECRHYFHLCCVDAWLKL-NGSCPVCRNSPLPTPL 177 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~-vr~l~~C~H~FH~~CI~~Wl~~-~~tCPlCR~~l~~~~~ 177 (197)
...++.+|+|||+.+...+. +..++ |||.||..|+..|+.. ...||+||..+.....
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 34567899999999875443 33345 9999999999998853 5689999998876544
No 49
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.12 E-value=1e-11 Score=90.01 Aligned_cols=48 Identities=23% Similarity=0.537 Sum_probs=40.6
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHhhC-CCCCcccCCCCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL-NGSCPVCRNSPL 173 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~-~~tCPlCR~~l~ 173 (197)
.++..|+||++.|.+. ..++ |||.||..||..|+.. +.+||+||..+.
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 3457899999999865 4567 9999999999999976 668999999874
No 50
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.10 E-value=2.5e-11 Score=79.33 Aligned_cols=49 Identities=29% Similarity=0.427 Sum_probs=40.2
Q ss_pred CCCCccccccccccCCccee-ecCCCCCc-cchhhHHHHhhCCCCCcccCCCCC
Q 029203 122 NINTTCSICLCEYKDLEMLR-MMPECRHY-FHLCCVDAWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr-~l~~C~H~-FH~~CI~~Wl~~~~tCPlCR~~l~ 173 (197)
.++.+|.||++.+.+. +. .+| |||. |+.+|+..|.+.+.+||+||+.+.
T Consensus 6 ~~~~~C~IC~~~~~~~--~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG--CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCE--EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCE--EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 3467999999986554 22 348 9999 899999999998899999999873
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.09 E-value=1.2e-10 Score=82.37 Aligned_cols=52 Identities=12% Similarity=-0.022 Sum_probs=44.8
Q ss_pred CCCCCccccccccccCCcceeecCCCC-CccchhhHHHHhhCCCCCcccCCCCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECR-HYFHLCCVDAWLKLNGSCPVCRNSPLPTP 176 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~-H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~ 176 (197)
..+.+.|+||++.|.+. ..++ || |.|+..||..|+..+.+||+||..+....
T Consensus 19 ~p~~~~CpI~~~~m~dP---V~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDP---VVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp CCTTTBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred CcHhcCCcCccccccCC---eECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence 45578999999999887 4567 99 99999999999998899999999886543
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.09 E-value=4.6e-11 Score=75.86 Aligned_cols=48 Identities=25% Similarity=0.510 Sum_probs=39.9
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
..+...|+||++.|.+. +.++ |||.||..||..| ..+||+||+.+...
T Consensus 3 e~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp SCCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred cccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 34568899999999875 5678 9999999999884 66899999988543
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.07 E-value=6.7e-11 Score=102.33 Aligned_cols=49 Identities=29% Similarity=0.719 Sum_probs=41.6
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHhh-CCCCCcccCCCCCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLK-LNGSCPVCRNSPLP 174 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~-~~~tCPlCR~~l~~ 174 (197)
....+|+||++.+.+ ...+| |||.||..||..|+. .+.+||+||..+..
T Consensus 330 ~~~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 330 STFQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp TSSSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 335799999999865 35677 999999999999998 78899999998754
No 54
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.07 E-value=3.6e-11 Score=101.90 Aligned_cols=53 Identities=26% Similarity=0.605 Sum_probs=41.1
Q ss_pred CCCCCccccccccccCCcce----eecCCCCCccchhhHHHHhhCC-----------CCCcccCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEML----RMMPECRHYFHLCCVDAWLKLN-----------GSCPVCRNSPL 173 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~v----r~l~~C~H~FH~~CI~~Wl~~~-----------~tCPlCR~~l~ 173 (197)
.+...+|+||++.+.++..+ ...+.|+|.||..||.+||+.. .+||+||+++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45678999999999884433 2333599999999999999642 47999999763
No 55
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.06 E-value=5.4e-11 Score=86.57 Aligned_cols=50 Identities=26% Similarity=0.540 Sum_probs=41.4
Q ss_pred CCccccccccccCCcceeec-CCCCCccchhhHHHHhhCCCCCcccCCCCCCCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMM-PECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTPLST 179 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l-~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~~~~ 179 (197)
...|+||++.|.+. ..+ + |||.||..||..|+. .+||+||..+....+..
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~ 72 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKI 72 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCC
T ss_pred CCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCccccccc
Confidence 67999999999765 344 6 999999999999998 88999999885544433
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.05 E-value=4.3e-11 Score=90.12 Aligned_cols=51 Identities=18% Similarity=0.384 Sum_probs=42.5
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCC-CCcccCCCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNG-SCPVCRNSPLPT 175 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~-tCPlCR~~l~~~ 175 (197)
..+...|+||++.|.+. ..++ |||.||..||..|+.... +||+||.++...
T Consensus 28 l~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred CCcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 34578999999999876 3467 999999999999998665 899999987543
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.04 E-value=5.1e-11 Score=77.55 Aligned_cols=50 Identities=24% Similarity=0.483 Sum_probs=40.3
Q ss_pred CCCCCccccccccccCCcceeecCCCCCc-cchhhHHHHhhCCCCCcccCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHY-FHLCCVDAWLKLNGSCPVCRNSP 172 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~-FH~~CI~~Wl~~~~tCPlCR~~l 172 (197)
.....+|.||++...+.. +..+| |||. |+..|+..|.+.+.+||+||+++
T Consensus 4 ~~~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i 54 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRDGN-IIHGR-TGHLVTCFHCARRLKKAGASCPICKKEI 54 (63)
T ss_dssp GGGGSBCTTTSSSBSCEE-EEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBC
T ss_pred CCcCCCCcccCCcCCCeE-EEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchh
Confidence 344679999999865431 22348 9998 99999999998889999999987
No 58
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.98 E-value=4.4e-10 Score=72.46 Aligned_cols=49 Identities=24% Similarity=0.529 Sum_probs=38.0
Q ss_pred CCCCCccccccccccCCcceeecCCCC--C---ccchhhHHHHhhC--CCCCcccCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECR--H---YFHLCCVDAWLKL--NGSCPVCRNSPL 173 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~--H---~FH~~CI~~Wl~~--~~tCPlCR~~l~ 173 (197)
.++...|.||+++. ++.+ ++| |. | .||..|+++|+.. +.+||+|+..+.
T Consensus 3 ~~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 3 DEDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TCSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 34567999999983 3344 577 65 4 9999999999964 568999998763
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.92 E-value=2.6e-10 Score=76.40 Aligned_cols=42 Identities=26% Similarity=0.662 Sum_probs=36.2
Q ss_pred CCccccccccccCCcceeecCCCCCc-cchhhHHHHhhCCCCCcccCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHY-FHLCCVDAWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~-FH~~CI~~Wl~~~~tCPlCR~~l~ 173 (197)
...|.||++.+.+. ..+| |||. ||..|+..| .+||+||..+.
T Consensus 24 ~~~C~iC~~~~~~~---~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 24 EKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HTBCTTTSSSBCCE---EEET-TCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred CCCCCCCCCCCCCE---EEcC-CCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 46899999987653 5678 9999 999999998 89999999874
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=4.6e-10 Score=78.67 Aligned_cols=51 Identities=20% Similarity=0.358 Sum_probs=40.3
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCC------CCCcc--cCCC-CCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLN------GSCPV--CRNS-PLP 174 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~------~tCPl--CR~~-l~~ 174 (197)
......|+||++.|.++ |.... |||.|+..||..|+..+ .+||+ |+.. +..
T Consensus 4 ~~~~~~CPI~~~~~~dP--V~~~~-cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKP--VKNKV-CGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp CSSCCBCTTTCSBCSSE--EEESS-SCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred CCcEeECcCcCchhcCC--EEcCC-CCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 45678999999999875 43324 99999999999999754 48999 9866 433
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.87 E-value=8e-10 Score=90.80 Aligned_cols=53 Identities=11% Similarity=0.023 Sum_probs=43.8
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCC-CCCcccCCCCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLN-GSCPVCRNSPLPTP 176 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~-~tCPlCR~~l~~~~ 176 (197)
.......|+||++-|.++ .+++ |||.|+..||..|+..+ .+||+||.++....
T Consensus 204 ~~~~~~~c~i~~~~~~dP---v~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp CCCSTTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred CCCcccCCcCcCCHhcCC---eECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 455688999999999877 4577 99999999999999764 46999999885433
No 62
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.85 E-value=7.2e-10 Score=85.51 Aligned_cols=51 Identities=27% Similarity=0.574 Sum_probs=42.5
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCC-CCcccCCCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNG-SCPVCRNSPLPT 175 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~-tCPlCR~~l~~~ 175 (197)
..+...|+||++.|.+. ..++ |||.||..||..|+.... +||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 15 LESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 45578999999999876 3467 999999999999997654 999999987553
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.85 E-value=1e-09 Score=76.66 Aligned_cols=49 Identities=29% Similarity=0.684 Sum_probs=41.1
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHhhC--------CCCCcc--cCCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL--------NGSCPV--CRNS 171 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~--------~~tCPl--CR~~ 171 (197)
.+..+|+||++++...+.+...+ |||.||.+|+..|+.. ..+||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 34678999999998877777777 9999999999999853 237999 9987
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=4.8e-09 Score=69.16 Aligned_cols=47 Identities=28% Similarity=0.620 Sum_probs=38.3
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCc-cchhhHHHHhhCCCCCcccCCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHY-FHLCCVDAWLKLNGSCPVCRNSPLP 174 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~-FH~~CI~~Wl~~~~tCPlCR~~l~~ 174 (197)
...+...|.||++...+ +..+| |||. |+..|+.. ..+||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred cCCCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 44557899999998554 56788 9999 99999984 5799999998743
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=3.4e-09 Score=71.00 Aligned_cols=43 Identities=26% Similarity=0.621 Sum_probs=35.3
Q ss_pred CCccccccccccCCcceeecCCCCCc-cchhhHHHHhhCCCCCcccCCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHY-FHLCCVDAWLKLNGSCPVCRNSPLP 174 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~-FH~~CI~~Wl~~~~tCPlCR~~l~~ 174 (197)
...|.||++.+.+. ..+| |||. ||..|+.. ...||+||..+..
T Consensus 25 ~~~C~IC~~~~~~~---~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCB---CCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCE---EEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 45899999997654 5678 9999 99999964 4789999998743
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.69 E-value=5.4e-09 Score=81.54 Aligned_cols=52 Identities=12% Similarity=0.014 Sum_probs=43.1
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCC-CCCcccCCCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLN-GSCPVCRNSPLPT 175 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~-~tCPlCR~~l~~~ 175 (197)
.....+.|+||++-|.++ .+++ |||.|+..||..|+..+ .+||+|+..+...
T Consensus 102 ~ip~~f~CPI~~elm~DP---V~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 102 EIPDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCcHhhcccCccccCCCC---eECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 456789999999999876 3557 99999999999999764 4799999887543
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.62 E-value=7.8e-09 Score=70.14 Aligned_cols=43 Identities=30% Similarity=0.621 Sum_probs=35.7
Q ss_pred CCccccccccccCCcceeecCCCCCc-cchhhHHHHhhCCCCCcccCCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHY-FHLCCVDAWLKLNGSCPVCRNSPLP 174 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~-FH~~CI~~Wl~~~~tCPlCR~~l~~ 174 (197)
...|.||++.+.+ ...+| |||. |+..|+..| ..||+||..+..
T Consensus 18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 4689999998655 46778 9999 999999887 399999998743
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.59 E-value=1.4e-08 Score=65.61 Aligned_cols=51 Identities=14% Similarity=0.185 Sum_probs=41.9
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTPL 177 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~~ 177 (197)
...|+||++.+.+. |...+ |||.|.+.||.+|+..+.+||+++..|....+
T Consensus 3 ~~~CpIs~~~m~dP--V~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 3 HMLCAISGKVPRRP--VLSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp -CCCTTTCSCCSSE--EEETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred eEEecCCCCCCCCC--EEeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 46899999999865 43336 99999999999999988899999998865433
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.57 E-value=1e-08 Score=84.12 Aligned_cols=55 Identities=24% Similarity=0.415 Sum_probs=43.8
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCC--CCCcc--cCCCCCCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLN--GSCPV--CRNSPLPTPLS 178 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~--~tCPl--CR~~l~~~~~~ 178 (197)
......|+||++.|.++ |+.+. |||.|++.||..|+..+ .+||+ |+..+....+.
T Consensus 178 ~~~el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~ 236 (267)
T 3htk_C 178 GKIELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFV 236 (267)
T ss_dssp SBCCSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEE
T ss_pred CceeeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCC
Confidence 45678999999999765 55455 99999999999999765 47999 99977654443
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.47 E-value=2.7e-08 Score=85.12 Aligned_cols=43 Identities=26% Similarity=0.686 Sum_probs=36.8
Q ss_pred CCCccccccccccCCcceeecCCCCCc-cchhhHHHHhhCCCCCcccCCCCC
Q 029203 123 INTTCSICLCEYKDLEMLRMMPECRHY-FHLCCVDAWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr~l~~C~H~-FH~~CI~~Wl~~~~tCPlCR~~l~ 173 (197)
+...|+||++.+.+. ..+| |||. ||..|+..| ..||+||..+.
T Consensus 294 ~~~~C~IC~~~~~~~---v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV---VFIP-CGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCE---EEET-TCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCce---EEcC-CCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 457999999998653 5668 9999 999999988 78999999874
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.26 E-value=1.3e-06 Score=71.03 Aligned_cols=47 Identities=26% Similarity=0.540 Sum_probs=39.5
Q ss_pred CCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCC--CCcccCCCC
Q 029203 123 INTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNG--SCPVCRNSP 172 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~--tCPlCR~~l 172 (197)
...+|+||.+-...+. ..++|+|.||..|+..|++.+. +||.|+...
T Consensus 179 ~i~~C~iC~~iv~~g~---~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp TCCBCTTTCSBCSSCE---ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCCcCcchhhHHhCCc---ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 4789999999998873 3345999999999999997755 899998864
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.21 E-value=7.7e-07 Score=62.34 Aligned_cols=45 Identities=31% Similarity=0.583 Sum_probs=36.2
Q ss_pred ccccccccccCCcceeecCCCCCccchhhHHHHhhC-CCCCcccCCCCC
Q 029203 126 TCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL-NGSCPVCRNSPL 173 (197)
Q Consensus 126 ~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~-~~tCPlCR~~l~ 173 (197)
-|.+|--.+.. ..|..| |+|+|+.+|+..|.++ .++||.|+.++.
T Consensus 3 fC~~C~~Pi~i--ygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSE--EEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEE--Eeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 47777666543 468888 9999999999999854 679999999873
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=96.84 E-value=0.0015 Score=42.33 Aligned_cols=53 Identities=19% Similarity=0.361 Sum_probs=38.2
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCC----CCCcccCCCCCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLN----GSCPVCRNSPLPTPL 177 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~----~tCPlCR~~l~~~~~ 177 (197)
......|.||.+. ++ +..--.|...||..|+++.|..- ..||.|.....+.+.
T Consensus 9 ~~~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p~P~ 65 (66)
T 2lri_C 9 LAPGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPV 65 (66)
T ss_dssp CCTTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCCCCC
T ss_pred CCCCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCCCccCCC
Confidence 3445789999743 44 44444599999999999988653 379999887665543
No 74
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=95.41 E-value=0.057 Score=36.37 Aligned_cols=36 Identities=17% Similarity=0.426 Sum_probs=25.4
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHH
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAW 158 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~W 158 (197)
...+..|.|| +.|..++...-= -|+-+||..|+.+-
T Consensus 12 ~~~D~~C~VC-~~~t~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVC-EVWTAESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTT-CCCCSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCCCcccCcc-ccccccceeccc-cccccccHhhcccc
Confidence 3467899999 445555433222 38999999999996
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.13 E-value=0.015 Score=40.16 Aligned_cols=34 Identities=15% Similarity=0.305 Sum_probs=25.9
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHH
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAW 158 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~W 158 (197)
+..|.||++.|.......-+. |+|.|+..|+..|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 468999998754433333466 9999999999983
No 76
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=94.51 E-value=0.061 Score=30.79 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhheec
Q 029203 17 LGYSIAIALGFLVLLSTVLLASYICCR 43 (197)
Q Consensus 17 ~~~~I~i~i~~~vli~~i~l~~~~~~~ 43 (197)
-+-+.+++++.++.+.++..+.+|++|
T Consensus 10 ~GaIAGiVvG~v~gv~li~~l~~~~~r 36 (38)
T 2k1k_A 10 GGEIVAVIFGLLLGAALLLGILVFRSR 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCceeeeehHHHHHHHHHHHHHHHHee
Confidence 344566666666544444444444433
No 77
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=94.22 E-value=0.068 Score=31.58 Aligned_cols=31 Identities=23% Similarity=0.224 Sum_probs=15.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhheecccc
Q 029203 15 IGLGYSIAIALGFLVLLSTVLLASYICCRRNN 46 (197)
Q Consensus 15 ~~~~~~I~i~i~~~vli~~i~l~~~~~~~~~~ 46 (197)
....++++.++|++ +++++.+.+.++.||++
T Consensus 9 ~~~~~Ia~~vVGvl-l~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 9 SPLTSIISAVVGIL-LVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp CSHHHHHHHHHHHH-HHHHHHHHHHHHHHHHC
T ss_pred CcccchHHHHHHHH-HHHHHHHHHHhheehhh
Confidence 44556777777744 33434444444444443
No 78
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=93.29 E-value=0.033 Score=35.16 Aligned_cols=49 Identities=24% Similarity=0.501 Sum_probs=34.2
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhC----CCCCcccCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL----NGSCPVCRNSPL 173 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~----~~tCPlCR~~l~ 173 (197)
..+...|.||-+. ++ +..--.|...||..|+.+-+.. ...||.|+...+
T Consensus 6 d~~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GE-LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp CSSCSSCTTTCCC---SS-CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred cCCCCcCCCCCCC---CC-EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 4557789999752 33 3344459999999999875543 236999977543
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=93.12 E-value=0.066 Score=33.74 Aligned_cols=47 Identities=23% Similarity=0.627 Sum_probs=33.5
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhC----CCCCcccCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL----NGSCPVCRN 170 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~----~~tCPlCR~ 170 (197)
.......|.||... ++ +..--.|...||..|+.+-+.. .-.||.|+.
T Consensus 7 ~~~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 7 ETDHQDYCEVCQQG---GE-IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSCCCSSCTTTSCC---SS-EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred cCCCCCCCccCCCC---Cc-EEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34557799999863 33 4444459999999999986543 337999965
No 80
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=92.60 E-value=0.051 Score=38.33 Aligned_cols=49 Identities=22% Similarity=0.530 Sum_probs=33.1
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhC----CCCCcccC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL----NGSCPVCR 169 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~----~~tCPlCR 169 (197)
...++..|.||.+.-+..+.+.=- .|...||..|++..+.. ...||-|+
T Consensus 3 ~~~~~~~C~~C~~~g~~~~ll~C~-~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 3 SGSSGANCAVCDSPGDLLDQFFCT-TCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCCSCBTTTCCCCCTTTSEECS-SSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCCcCCCCCCCCcCCeECC-CCCCCcChHHhCCccccccccCccCCcCC
Confidence 455678999998764333334433 59999999999887642 23566664
No 81
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=92.49 E-value=0.25 Score=28.35 Aligned_cols=13 Identities=31% Similarity=0.480 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 029203 19 YSIAIALGFLVLL 31 (197)
Q Consensus 19 ~~I~i~i~~~vli 31 (197)
+.++++.|+++++
T Consensus 15 I~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 15 VIGGVAVGVVLLL 27 (41)
T ss_dssp HHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHH
Confidence 4555555555533
No 82
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=92.41 E-value=0.11 Score=35.63 Aligned_cols=52 Identities=29% Similarity=0.617 Sum_probs=38.5
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTPLS 178 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~~~ 178 (197)
......|-.|+-+.. .-|+ ...|.+|..|+..-|.....||+|+.+| |+.+.
T Consensus 25 ~~G~~nCKsCWf~~k--~LV~---C~dHYLCl~CLtlmL~~SdrCpIC~~pL-Ptkl~ 76 (99)
T 2ko5_A 25 HLGPQFCKSCWFENK--GLVE---CNNHYLCLNCLTLLLSVSNRCPICKMPL-PTKLR 76 (99)
T ss_dssp CSCCCCCCSSCSCCS--SEEE---CSSCEEEHHHHHHTCSSSSEETTTTEEC-CCCSC
T ss_pred ccCcccChhhccccC--Ceee---ecchhhHHHHHHHHHhhccCCcccCCcC-Cccee
Confidence 344678999987643 2232 1369999999999999999999998876 44443
No 83
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=92.06 E-value=0.23 Score=29.27 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 029203 19 YSIAIALGFLVLLSTVLLASYI 40 (197)
Q Consensus 19 ~~I~i~i~~~vli~~i~l~~~~ 40 (197)
+..+++.|+++++.++++.++|
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~ 33 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVY 33 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeehHHHHHHHHHHHHHHHH
Confidence 3444444455544444333333
No 84
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=91.67 E-value=0.055 Score=34.26 Aligned_cols=50 Identities=26% Similarity=0.476 Sum_probs=34.9
Q ss_pred CCCCCccccccccccCCc-ceeecCCCCCccchhhHHHHhh-----CCCCCcccCCC
Q 029203 121 NNINTTCSICLCEYKDLE-MLRMMPECRHYFHLCCVDAWLK-----LNGSCPVCRNS 171 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~-~vr~l~~C~H~FH~~CI~~Wl~-----~~~tCPlCR~~ 171 (197)
..+...|.||...+.++. .|.-- .|..=||..|+.--.. ....||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd-~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCD-LCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECS-SSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEcc-CCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 345678999999986544 44433 5999999999864321 34579999763
No 85
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=91.24 E-value=0.22 Score=31.86 Aligned_cols=22 Identities=23% Similarity=0.230 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhheecccc
Q 029203 25 LGFLVLLSTVLLASYICCRRNN 46 (197)
Q Consensus 25 i~~~vli~~i~l~~~~~~~~~~ 46 (197)
.|++.++.++.+.+++|.++++
T Consensus 15 Gg~~~lll~~glcI~ccvkcrh 36 (70)
T 2klu_A 15 GGVAGLLLFIGLGIFFSVRSRH 36 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSC
T ss_pred hHHHHHHHHHHHHHHHhhHHHH
Confidence 3334444444444454554443
No 86
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=91.24 E-value=0.059 Score=41.39 Aligned_cols=46 Identities=28% Similarity=0.527 Sum_probs=33.7
Q ss_pred CCCccccccccccCCcceeecCCCCCccchhhHHHHhhC----CCCCcccCCCC
Q 029203 123 INTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL----NGSCPVCRNSP 172 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~----~~tCPlCR~~l 172 (197)
++..|.||... |+ +.....|...||..|+.+-+.. ...||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45789999753 44 4444469999999999887754 24799998754
No 87
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=90.93 E-value=0.18 Score=29.78 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 029203 20 SIAIALGFLVLLSTV 34 (197)
Q Consensus 20 ~I~i~i~~~vli~~i 34 (197)
..+++.|+++++.++
T Consensus 14 A~gVVgGv~~~~ii~ 28 (44)
T 2ks1_B 14 ATGMVGALLLLLVVA 28 (44)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred EeehhHHHHHHHHHH
Confidence 334444444444333
No 88
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=90.90 E-value=0.13 Score=30.99 Aligned_cols=44 Identities=30% Similarity=0.722 Sum_probs=30.0
Q ss_pred ccccccccccCCcceeecCCCCCccchhhHHHHhhC----CCCCcccCC
Q 029203 126 TCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL----NGSCPVCRN 170 (197)
Q Consensus 126 ~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~----~~tCPlCR~ 170 (197)
.|.||...-..++.+ .--.|...||..|+++=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll-~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLI-LCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCE-ECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEE-ECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488887764444344 44459999999999865543 236999965
No 89
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=90.85 E-value=0.07 Score=41.83 Aligned_cols=48 Identities=25% Similarity=0.441 Sum_probs=35.1
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCC----CCCcccCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLN----GSCPVCRNSP 172 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~----~tCPlCR~~l 172 (197)
..+...|.+|-.. ..+.....|...||..|+.+.+... ..||.|+..-
T Consensus 4 d~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3456789999743 3455555699999999998877543 4799998743
No 90
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=89.54 E-value=0.088 Score=33.46 Aligned_cols=52 Identities=19% Similarity=0.453 Sum_probs=36.1
Q ss_pred CCCCCcccccccccc-CCcceeecCCCCCccchhhHHHHhh-------CCCCCcccCCCC
Q 029203 121 NNINTTCSICLCEYK-DLEMLRMMPECRHYFHLCCVDAWLK-------LNGSCPVCRNSP 172 (197)
Q Consensus 121 ~~~~~~CaICL~~~~-~~~~vr~l~~C~H~FH~~CI~~Wl~-------~~~tCPlCR~~l 172 (197)
..+...|.||..... ++..+..-..|.-.||..|+.+=+. ....||.|....
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 455789999998653 3344555556999999999986442 234799996543
No 91
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.29 E-value=0.08 Score=32.69 Aligned_cols=47 Identities=34% Similarity=0.684 Sum_probs=32.7
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhC----CCCCcccCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL----NGSCPVCRN 170 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~----~~tCPlCR~ 170 (197)
...++..|.||-.. ++.+ .-..|...||..|+.+=|.. .-.||.|..
T Consensus 5 ~~~~~~~C~vC~~~---g~ll-~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 5 SSGHEDFCSVCRKS---GQLL-MCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSSCCSCSSSCCS---SCCE-ECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred cCCCCCCCccCCCC---CeEE-EcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 34557789999874 4434 44459999999999875543 235988854
No 92
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=89.20 E-value=0.18 Score=39.00 Aligned_cols=48 Identities=21% Similarity=0.514 Sum_probs=34.4
Q ss_pred CCccccccccccCCcc---eeecCCCCCccchhhHHH------Hhh-----CCCCCcccCCC
Q 029203 124 NTTCSICLCEYKDLEM---LRMMPECRHYFHLCCVDA------WLK-----LNGSCPVCRNS 171 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~---vr~l~~C~H~FH~~CI~~------Wl~-----~~~tCPlCR~~ 171 (197)
+..|+||...|.+++. ....-.|..=||..|+.- =+. ..-.||.|+..
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 4579999999998762 334445999999999832 111 15689999774
No 93
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=88.87 E-value=0.13 Score=36.36 Aligned_cols=45 Identities=31% Similarity=0.589 Sum_probs=31.8
Q ss_pred ccccccccccCCcceeecCCCCCccchhhHHHHhhC----CCCCcccCC
Q 029203 126 TCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL----NGSCPVCRN 170 (197)
Q Consensus 126 ~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~----~~tCPlCR~ 170 (197)
.|.||...-.+.+.+..--.|...||..|+++-|.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 688998753343444444469999999999876643 237999975
No 94
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=88.82 E-value=0.64 Score=34.38 Aligned_cols=46 Identities=20% Similarity=0.345 Sum_probs=33.5
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhh-----------CCCCCcccCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLK-----------LNGSCPVCRN 170 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~-----------~~~tCPlCR~ 170 (197)
...+..|.||-+. | ++...-.|-..||..||++=+. ....||+|+.
T Consensus 60 Dg~~d~C~vC~~G---G-~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---S-SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---C-cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4567899999764 4 4444445999999999997652 2347999974
No 95
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=88.72 E-value=0.16 Score=34.38 Aligned_cols=58 Identities=19% Similarity=0.305 Sum_probs=38.3
Q ss_pred CCCCCccccccccc-cCCcceeecCCCCCccchhhHHHHhh--CCCCCcccCCCCCCCCCC
Q 029203 121 NNINTTCSICLCEY-KDLEMLRMMPECRHYFHLCCVDAWLK--LNGSCPVCRNSPLPTPLS 178 (197)
Q Consensus 121 ~~~~~~CaICL~~~-~~~~~vr~l~~C~H~FH~~CI~~Wl~--~~~tCPlCR~~l~~~~~~ 178 (197)
..+...|.||...- .+.+.+.....|.-.||..|+..-+. ....||.|......+.++
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~~~ 82 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPALE 82 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC--
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhhhh
Confidence 34568999998753 23345555556999999999986431 234699997766554443
No 96
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=88.12 E-value=0.73 Score=33.50 Aligned_cols=47 Identities=19% Similarity=0.373 Sum_probs=33.0
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHh------h-----CCCCCcccCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWL------K-----LNGSCPVCRNS 171 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl------~-----~~~tCPlCR~~ 171 (197)
...+..|.||-+- .++..-..|-..||..||++=+ + ....|++|+..
T Consensus 54 Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 4556789999753 4444444699999999999752 1 22479999654
No 97
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=88.06 E-value=0.25 Score=34.10 Aligned_cols=47 Identities=23% Similarity=0.363 Sum_probs=32.3
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHhh---CCCCCcccCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLK---LNGSCPVCRN 170 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~---~~~tCPlCR~ 170 (197)
.+...| ||-.....+..|.-- .|.--||..|+..=+. ....||.|+.
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~Cd-~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICCD-KCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEBT-TTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCCEEe-ECCCccCCCcEEEcC-CCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 344667 898776666555444 5999999999875332 2347999974
No 98
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=87.68 E-value=0.11 Score=33.83 Aligned_cols=51 Identities=22% Similarity=0.331 Sum_probs=35.0
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHhhC----CCCCcccCCCCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL----NGSCPVCRNSPL 173 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~----~~tCPlCR~~l~ 173 (197)
.+...|.||-.... ++.....-.|.--||..|+..-... ...||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 44567999987754 4333344459999999999765532 347999977553
No 99
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=87.02 E-value=0.63 Score=31.56 Aligned_cols=48 Identities=29% Similarity=0.535 Sum_probs=34.5
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhC----CCCCcccCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL----NGSCPVCRNS 171 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~----~~tCPlCR~~ 171 (197)
...+...|.||... ++ +.....|.-.||..|+++=|.. ...||.|+..
T Consensus 21 ~d~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 21 LDDSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cCCCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 44567799999864 44 4444458999999999886644 2369999764
No 100
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=86.27 E-value=0.34 Score=31.44 Aligned_cols=51 Identities=18% Similarity=0.329 Sum_probs=35.0
Q ss_pred CCCCCCccccccccc-cCCcceeecCCCCCccchhhHHHHh--hCCCCCcccCC
Q 029203 120 SNNINTTCSICLCEY-KDLEMLRMMPECRHYFHLCCVDAWL--KLNGSCPVCRN 170 (197)
Q Consensus 120 ~~~~~~~CaICL~~~-~~~~~vr~l~~C~H~FH~~CI~~Wl--~~~~tCPlCR~ 170 (197)
...+...|.||...- .+++.+..--.|.-.||..|+..-. +....||.|+.
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 345678999998763 3444555555799999999997533 12336988864
No 101
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=86.06 E-value=1.3 Score=29.05 Aligned_cols=52 Identities=25% Similarity=0.413 Sum_probs=34.1
Q ss_pred CCCCCccccccccccC-CcceeecCCCCCccchhhHHHHh-----hCCCCCcccCCCCCC
Q 029203 121 NNINTTCSICLCEYKD-LEMLRMMPECRHYFHLCCVDAWL-----KLNGSCPVCRNSPLP 174 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~-~~~vr~l~~C~H~FH~~CI~~Wl-----~~~~tCPlCR~~l~~ 174 (197)
......| ||-..+.+ +..|.-- .|..=||..|+.--- .....||.|+...-+
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd-~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECG-LCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBT-TTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred cCCccEE-EcCCccCCCCceEEcC-CCCCcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 3445667 99998863 3444444 599999999994211 134579999876533
No 102
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=85.83 E-value=0.23 Score=31.61 Aligned_cols=48 Identities=25% Similarity=0.528 Sum_probs=33.5
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhC----CCCCcccCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL----NGSCPVCRNSP 172 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~----~~tCPlCR~~l 172 (197)
..++..|.||... ++ +..-..|...||..|+.+-|.. ...||.|...-
T Consensus 5 ~~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 5 QKNEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp CSCCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 3457799999863 44 3344459999999999875543 23699996543
No 103
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=84.26 E-value=0.23 Score=34.79 Aligned_cols=51 Identities=22% Similarity=0.440 Sum_probs=35.0
Q ss_pred CCccccccccccCCcceeecC-CCCCccchhhHHHH------h----hCCCCCcccCCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMP-ECRHYFHLCCVDAW------L----KLNGSCPVCRNSPLP 174 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~-~C~H~FH~~CI~~W------l----~~~~tCPlCR~~l~~ 174 (197)
...|.||...|.+.+.....- .|..=||..|+.-= + ..+..||.|+..--+
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEG 64 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCC
Confidence 457999999987655444443 58999999998421 1 034479999775533
No 104
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=83.99 E-value=1.9 Score=30.13 Aligned_cols=47 Identities=26% Similarity=0.460 Sum_probs=29.7
Q ss_pred CCCcccccccccc-----CCcceeecCCCCCccchhhHHH------Hh-hCCCCCcccC
Q 029203 123 INTTCSICLCEYK-----DLEMLRMMPECRHYFHLCCVDA------WL-KLNGSCPVCR 169 (197)
Q Consensus 123 ~~~~CaICL~~~~-----~~~~vr~l~~C~H~FH~~CI~~------Wl-~~~~tCPlCR 169 (197)
....|.+|+..-. .++++..-..|+..||..|+.. .+ ...-.||-|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 3568999987631 2334444446999999999953 22 2334577664
No 105
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=83.85 E-value=0.33 Score=37.48 Aligned_cols=45 Identities=31% Similarity=0.642 Sum_probs=31.7
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhC----CCCCcccCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL----NGSCPVCRNSP 172 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~----~~tCPlCR~~l 172 (197)
...|.+|... ++.+ ..-.|...||..|+.+=+.. ...||.|+...
T Consensus 2 ~~~C~~C~~~---g~ll-~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GDLV-MCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SSCC-CCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---Ccee-ECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 4579999854 4433 34458999999999875543 23699998754
No 106
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.78 E-value=0.6 Score=30.41 Aligned_cols=50 Identities=26% Similarity=0.406 Sum_probs=34.0
Q ss_pred CCCccccccccccCCcceeecCCCCCccchhhHHHH---------hhCCCCCcccCCCCCC
Q 029203 123 INTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAW---------LKLNGSCPVCRNSPLP 174 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~W---------l~~~~tCPlCR~~l~~ 174 (197)
....| ||-..+..+..|.-- .|..=||..|+.-- ...+..||.|+..-.|
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd-~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCD-RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECS-SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CCCEE-ECCCccCCCCEEEeC-CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 35667 898887655555544 49999999998421 1246689999765443
No 107
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=83.68 E-value=0.29 Score=30.47 Aligned_cols=46 Identities=33% Similarity=0.657 Sum_probs=32.5
Q ss_pred CCCccccccccccCCcceeecCCCCCccchhhHHHHhhC----CCCCcccCCCC
Q 029203 123 INTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL----NGSCPVCRNSP 172 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~----~~tCPlCR~~l 172 (197)
++..|.||... ++.+ .-..|...||..|+.+=+.. ...||.|....
T Consensus 4 ~~~~C~vC~~~---g~ll-~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLL-MCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---SSCE-ECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---CcEE-EcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 46789999864 4444 44459999999999975543 23699996644
No 108
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=83.21 E-value=0.53 Score=26.27 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhheeccc
Q 029203 20 SIAIALGFLVLLSTVLLASYICCRRN 45 (197)
Q Consensus 20 ~I~i~i~~~vli~~i~l~~~~~~~~~ 45 (197)
+++.++| +++++++.+.+.+++||+
T Consensus 10 IaagVvg-lll~vii~l~~~~~iRRr 34 (35)
T 1iij_A 10 IIATVVG-VLLFLILVVVVGILIKRR 34 (35)
T ss_dssp HHHHHHH-HHHHHHHTTTTTHHHHHC
T ss_pred eHHHHHH-HHHHHHHHHHhheEEeec
Confidence 4444445 333333334444444443
No 109
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=83.11 E-value=0.95 Score=28.75 Aligned_cols=36 Identities=25% Similarity=0.561 Sum_probs=25.9
Q ss_pred CCCCCccccccccccCCcceeecC-CCCCccchhhHH
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMP-ECRHYFHLCCVD 156 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~-~C~H~FH~~CI~ 156 (197)
.+....|.+|...+.+++..+..- .|.--||..|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 345678999999988776555554 599999999983
No 110
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=83.03 E-value=0.72 Score=44.06 Aligned_cols=52 Identities=13% Similarity=0.050 Sum_probs=43.6
Q ss_pred CCCCCCccccccccccCCcceeecCCCC-CccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECR-HYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~-H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
...+.+.|+|-++-+.++ .++| -| +.|-+.+|.+||..+.+||+=|.++...
T Consensus 887 ~iP~~F~cPIs~~lM~DP---Vilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDP---VILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp CSCGGGBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCcHHhCCcchhhHHhCC---eEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 456789999999998876 4567 76 6899999999999999999998887543
No 111
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.92 E-value=0.34 Score=33.04 Aligned_cols=49 Identities=22% Similarity=0.394 Sum_probs=33.7
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHhhC----CCCCcccCCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL----NGSCPVCRNS 171 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~----~~tCPlCR~~ 171 (197)
.+...|.||...-..+ .+...-.|...||..|+.+=|.. .-.||.|...
T Consensus 14 ~~~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGG-GCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCC-CEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 4456899998764433 34444459999999999864433 2369999764
No 112
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=82.75 E-value=0.21 Score=35.99 Aligned_cols=50 Identities=14% Similarity=0.455 Sum_probs=32.2
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRN 170 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~ 170 (197)
......|..|-..|..-..--...+||.+|+..|..........|-.|-.
T Consensus 16 d~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 16 TGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp ----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred ccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 44567999999999754433344479999999997766555667888844
No 113
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=81.21 E-value=1.5 Score=26.30 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=29.2
Q ss_pred ccccccccccCCcceeecC-CCCCccchhhHHHH----hhCCCCCcccC
Q 029203 126 TCSICLCEYKDLEMLRMMP-ECRHYFHLCCVDAW----LKLNGSCPVCR 169 (197)
Q Consensus 126 ~CaICL~~~~~~~~vr~l~-~C~H~FH~~CI~~W----l~~~~tCPlCR 169 (197)
.|.+|...+.+++....-- .|..=||..|+.-- ...+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 5788988886554433333 48889999997421 13556899885
No 114
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=81.18 E-value=0.69 Score=34.85 Aligned_cols=49 Identities=20% Similarity=0.505 Sum_probs=32.4
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHh-----hCCCCCcccCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWL-----KLNGSCPVCRN 170 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl-----~~~~tCPlCR~ 170 (197)
......| ||...+.++......-.|..-||..|+.--- .....||.|+.
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 3456788 9998876444333444599999999995211 23457999975
No 115
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=81.13 E-value=1.3 Score=29.37 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=27.5
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHH
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAW 158 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~W 158 (197)
.+...|.+|...|..-..--....||++|+..|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 4467899999999855433344469999999997653
No 116
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.86 E-value=0.32 Score=32.87 Aligned_cols=50 Identities=20% Similarity=0.394 Sum_probs=35.6
Q ss_pred CCCccccccccccC-CcceeecCCCCCccchhhHHHHhh--------CCCCCcccCCCC
Q 029203 123 INTTCSICLCEYKD-LEMLRMMPECRHYFHLCCVDAWLK--------LNGSCPVCRNSP 172 (197)
Q Consensus 123 ~~~~CaICL~~~~~-~~~vr~l~~C~H~FH~~CI~~Wl~--------~~~tCPlCR~~l 172 (197)
....|.||...-.. ++.+...-.|...||..|+.+=|. ....||.|+...
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 35689999876432 345555557999999999987654 234799997654
No 117
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=80.85 E-value=1.7 Score=29.22 Aligned_cols=53 Identities=13% Similarity=0.284 Sum_probs=36.6
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhh-------CCCCCcccCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLK-------LNGSCPVCRNSPL 173 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~-------~~~tCPlCR~~l~ 173 (197)
..+...|.+|...|..-..--....||++|+..|....+. ....|-.|-..+.
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 4556799999999986543334446999999999765431 1236888866553
No 118
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=80.71 E-value=1.3 Score=29.36 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=28.1
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHH
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAW 158 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~W 158 (197)
..+...|.+|-..|..-..--....||++|+..|....
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 34567999999999765433344469999999997654
No 119
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=80.43 E-value=0.67 Score=32.70 Aligned_cols=45 Identities=24% Similarity=0.473 Sum_probs=28.6
Q ss_pred Ccccccccccc------CCcceeecCCCCCccchhhHHHHh-------hCCCCCcccC
Q 029203 125 TTCSICLCEYK------DLEMLRMMPECRHYFHLCCVDAWL-------KLNGSCPVCR 169 (197)
Q Consensus 125 ~~CaICL~~~~------~~~~vr~l~~C~H~FH~~CI~~Wl-------~~~~tCPlCR 169 (197)
..|.||+..-. +++++..-..|+..||..|+..+. ...-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 46999987542 123444444599999999997642 2234677663
No 120
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=79.76 E-value=1.9 Score=25.24 Aligned_cols=29 Identities=21% Similarity=0.156 Sum_probs=17.0
Q ss_pred HHHHHHHHH-HHHHHHHHHhheeccccCCC
Q 029203 21 IAIALGFLV-LLSTVLLASYICCRRNNSSH 49 (197)
Q Consensus 21 I~i~i~~~v-li~~i~l~~~~~~~~~~~~~ 49 (197)
-+|+.++++ ++.++++++.++...+++++
T Consensus 10 ~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 10 PLIAAGVIGGLFILVIVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred ceEEEeehHHHHHHHHHHHHHHHHhhhhhh
Confidence 456666665 55555566566666666543
No 121
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=79.66 E-value=2.2 Score=29.83 Aligned_cols=50 Identities=22% Similarity=0.390 Sum_probs=32.7
Q ss_pred CCCCCCccccccccccCCcceeecC--CCCCccchhhHHHHhhCC----CCCcccCCCCCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMP--ECRHYFHLCCVDAWLKLN----GSCPVCRNSPLPT 175 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~--~C~H~FH~~CI~~Wl~~~----~tCPlCR~~l~~~ 175 (197)
...++..|.+|.+ .+ ++..-- .|-..||..|+. |... ..||.|.-.+..+
T Consensus 11 ~~~~~~~C~~C~~---~G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 11 KQMHEDYCFQCGD---GG-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp CCSSCSSCTTTCC---CS-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred cCCCCCCCCcCCC---CC-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 3456778999983 23 343333 388999999998 5432 2588876655443
No 122
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=79.06 E-value=0.38 Score=31.76 Aligned_cols=44 Identities=34% Similarity=0.699 Sum_probs=28.9
Q ss_pred ccccccccccCCcceeecCCCCCccchhhHHHHhhC----C-CCCcccCC
Q 029203 126 TCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL----N-GSCPVCRN 170 (197)
Q Consensus 126 ~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~----~-~tCPlCR~ 170 (197)
.|.||-..-. .+.+..--.|...||..|+++-|.. . -.||.|+.
T Consensus 28 ~C~vC~~~~d-~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCC-CcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 5667765433 3344444468999999999976643 2 46999975
No 123
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.01 E-value=1.6 Score=29.02 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=26.5
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHH
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDA 157 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~ 157 (197)
..+...|.+|...|..-..--....||.+|+..|...
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3456799999999975443333446999999999543
No 124
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=79.01 E-value=1.2 Score=30.15 Aligned_cols=37 Identities=14% Similarity=0.268 Sum_probs=27.8
Q ss_pred CCCccccccccccCCcceeecCCCCCccchhhHHHHh
Q 029203 123 INTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWL 159 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl 159 (197)
+...|.+|...|..-..-.....||++|+..|...+.
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 4568999999997554334444699999999977654
No 125
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=78.52 E-value=1.2 Score=32.10 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=26.6
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHH
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDA 157 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~ 157 (197)
.+...|.+|-..|..-..--....||++|+..|...
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 345689999999975543334446999999999654
No 126
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=77.21 E-value=5.6 Score=25.33 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhheeccccCC
Q 029203 19 YSIAIALGFLVLLSTVLLASYICCRRNNSS 48 (197)
Q Consensus 19 ~~I~i~i~~~vli~~i~l~~~~~~~~~~~~ 48 (197)
++++-++++++++.+.+++.+-|++|+++.
T Consensus 12 ivlGg~~~lll~~glcI~ccvkcrhRrrqA 41 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSVRSRHRRRQA 41 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSSSC
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 678888888888888888777788888853
No 127
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.65 E-value=0.64 Score=30.63 Aligned_cols=45 Identities=24% Similarity=0.625 Sum_probs=30.6
Q ss_pred CccccccccccCCcceeecCCCCCccchhhHHHHhhC-----CCCCcccCC
Q 029203 125 TTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL-----NGSCPVCRN 170 (197)
Q Consensus 125 ~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~-----~~tCPlCR~ 170 (197)
..|.||...-. ++.+..--.|...||..|+++=|.. .-.||.|..
T Consensus 27 c~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 47889986433 3344444469999999999865532 336998865
No 128
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=76.65 E-value=6.4 Score=26.60 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=37.1
Q ss_pred CCCCcccccccccc---CCcceeecCCCCCccchhhHHHHh-hCCCCCcccCCCCC
Q 029203 122 NINTTCSICLCEYK---DLEMLRMMPECRHYFHLCCVDAWL-KLNGSCPVCRNSPL 173 (197)
Q Consensus 122 ~~~~~CaICL~~~~---~~~~vr~l~~C~H~FH~~CI~~Wl-~~~~tCPlCR~~l~ 173 (197)
.....|.||=+++- +++...-...|+--.++.|.+-=. ..++.||.|+...-
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 35679999988864 343333333578888999997655 44678999998874
No 129
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=76.25 E-value=1.3 Score=28.99 Aligned_cols=51 Identities=24% Similarity=0.460 Sum_probs=33.6
Q ss_pred CCCCccccccccccCCcceeec-CCCCCccchhhHHHHh---------hCCCCCcccCCCCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMM-PECRHYFHLCCVDAWL---------KLNGSCPVCRNSPL 173 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l-~~C~H~FH~~CI~~Wl---------~~~~tCPlCR~~l~ 173 (197)
.....| ||-.....+..|.-- +.|..=||..|+.--- ..+..||.|+..-.
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 456678 898875556555433 0399999999985311 13557999976543
No 130
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=76.16 E-value=2.6 Score=30.40 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=20.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhheeccc
Q 029203 13 TNIGLGYSIAIALGFLVLLSTVLLASYICCRRN 45 (197)
Q Consensus 13 ~~~~~~~~I~i~i~~~vli~~i~l~~~~~~~~~ 45 (197)
.+....+.|.++++|+.++++-+++.|+.-+++
T Consensus 48 ~~~~~ylYIL~vmgffgff~~GImLsYiRSKk~ 80 (138)
T 2k21_A 48 DGKLEALYVLMVLGFFGFFTLGIMLSYIRSKKL 80 (138)
T ss_dssp TCSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceeehHHHHHHHHHHHHHHHHHHHhHhhhc
Confidence 333344566667777777777777777654444
No 131
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=75.82 E-value=0.75 Score=29.62 Aligned_cols=44 Identities=36% Similarity=0.721 Sum_probs=29.1
Q ss_pred ccccccccccCCcceeecCCCCCccchhhHHHHhhC-----CCCCcccCC
Q 029203 126 TCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL-----NGSCPVCRN 170 (197)
Q Consensus 126 ~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~-----~~tCPlCR~ 170 (197)
.|.||...- +++.+..--.|...||..|+++=|.. .-.||.|+.
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 567776542 23344444469999999999865532 336999965
No 132
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=75.32 E-value=2.3 Score=27.39 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=24.6
Q ss_pred CccccccccccCCcceeecCCCCCccchhhHHH
Q 029203 125 TTCSICLCEYKDLEMLRMMPECRHYFHLCCVDA 157 (197)
Q Consensus 125 ~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~ 157 (197)
..|.+|...|..-..--.-..||++|+..|-..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 589999999975543334446999999999643
No 133
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=74.47 E-value=0.6 Score=30.12 Aligned_cols=51 Identities=25% Similarity=0.360 Sum_probs=33.7
Q ss_pred CCCCccccccccccCCc-ceeecCCCCCccchhhHHHHh----hCCCCCcccCCCCCC
Q 029203 122 NINTTCSICLCEYKDLE-MLRMMPECRHYFHLCCVDAWL----KLNGSCPVCRNSPLP 174 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~-~vr~l~~C~H~FH~~CI~~Wl----~~~~tCPlCR~~l~~ 174 (197)
.....| ||-....+++ .|.-- .|..=||..|+.--- ..+..||.|+..-.|
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd-~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~p 69 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACD-GCGVWHHTRCIGINNADALPSKFLCFRCIELSGP 69 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECS-SSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSS
T ss_pred CcceEe-eCCCccCCCCcEEECC-CCCCccCCeeeccCccccCCCcEECCCccCCCCC
Confidence 345678 7988776664 44433 499999999986421 234579999765443
No 134
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=73.26 E-value=1.4 Score=25.89 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=9.6
Q ss_pred CcccccchhHHHHHHHHHHHH
Q 029203 10 NYLTNIGLGYSIAIALGFLVL 30 (197)
Q Consensus 10 ~~~~~~~~~~~I~i~i~~~vl 30 (197)
+..+.+..+.+.++++.++++
T Consensus 8 s~~~~IA~gVVgGv~~~~ii~ 28 (44)
T 2ks1_B 8 PKIPSIATGMVGALLLLLVVA 28 (44)
T ss_dssp SCSSSSTHHHHHHHHHHHHHH
T ss_pred CCcceEEeehhHHHHHHHHHH
Confidence 344445555555444444333
No 135
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=73.23 E-value=3.7 Score=27.86 Aligned_cols=46 Identities=33% Similarity=0.662 Sum_probs=29.1
Q ss_pred CCCCccccccccccCCcceeecCC--CC-CccchhhHHHHhhC----CCCCcccCCCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPE--CR-HYFHLCCVDAWLKL----NGSCPVCRNSP 172 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~--C~-H~FH~~CI~~Wl~~----~~tCPlCR~~l 172 (197)
.+...| ||-.... ++.| ..-+ |. .-||..|+. |.. +..||.|+...
T Consensus 34 ~e~~yC-iC~~~~~-g~MI-~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCC-SCCC-CCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCC-CCEe-EecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 445677 9987643 4333 2223 54 579999997 433 34799997654
No 136
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=72.88 E-value=5 Score=25.74 Aligned_cols=47 Identities=32% Similarity=0.636 Sum_probs=29.6
Q ss_pred CCCCCccccccccccCCcceeecCC--CC-CccchhhHHHHhhC----CCCCcccCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPE--CR-HYFHLCCVDAWLKL----NGSCPVCRNSP 172 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~--C~-H~FH~~CI~~Wl~~----~~tCPlCR~~l 172 (197)
..+...| ||-... .++.| .--+ |. .-||..|+. |.. +..||.|+..-
T Consensus 13 ~~~~~~C-~C~~~~-~g~MI-~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 13 PNEPTYC-LCHQVS-YGEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TTSCCCS-TTCCCS-CSSEE-CCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCCEE-ECCCCC-CCCEe-EeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 3445677 897754 24433 3234 55 689999997 443 33799997654
No 137
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=72.83 E-value=5.6 Score=21.72 Aligned_cols=26 Identities=35% Similarity=0.376 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhee
Q 029203 17 LGYSIAIALGFLVLLSTVLLASYICC 42 (197)
Q Consensus 17 ~~~~I~i~i~~~vli~~i~l~~~~~~ 42 (197)
.+-+.+|+++-++..+.+.+.+|++.
T Consensus 6 ~gaIaGIVvgdi~~t~~i~~~vy~~~ 31 (33)
T 2l34_A 6 PGVLAGIVVGDLVLTVLIALAVYFLG 31 (33)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cceEEeEeHHHHHHHHHHHHHHhhee
Confidence 34466677777666666666666653
No 138
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=72.29 E-value=2.4 Score=26.41 Aligned_cols=42 Identities=31% Similarity=0.656 Sum_probs=30.1
Q ss_pred CccccccccccCCcceeecCCCCCccchhhHHHHh-hCCCCCccc
Q 029203 125 TTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWL-KLNGSCPVC 168 (197)
Q Consensus 125 ~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl-~~~~tCPlC 168 (197)
..|--|+..|.+.. +..-++|++.|+.+| |..+ +.-.+||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 46999999996433 345667999999999 4433 333489988
No 139
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=70.94 E-value=9.2 Score=22.04 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=14.6
Q ss_pred CcccccchhHHHHHHHHHHHHHHHHHHHHh
Q 029203 10 NYLTNIGLGYSIAIALGFLVLLSTVLLASY 39 (197)
Q Consensus 10 ~~~~~~~~~~~I~i~i~~~vli~~i~l~~~ 39 (197)
.+.....|.++++++.|++++ .++++++|
T Consensus 4 ~~~~vp~wiIi~s~l~GLllL-~li~~~Lw 32 (42)
T 2k1a_A 4 EERAIPIWWVLVGVLGGLLLL-TILVLAMW 32 (42)
T ss_dssp SCCCCCHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred CcCCcchHHHHHHHHHHHHHH-HHHHHHHH
Confidence 333444566666665555553 33444444
No 140
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=70.77 E-value=2.2 Score=33.38 Aligned_cols=35 Identities=17% Similarity=0.330 Sum_probs=26.3
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHH
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAW 158 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~W 158 (197)
...|.+|...|.--..-.....||++||..|-...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 57999999999755433344469999999996543
No 141
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=70.50 E-value=2.4 Score=33.50 Aligned_cols=36 Identities=14% Similarity=0.347 Sum_probs=27.3
Q ss_pred CCCccccccccccCCcceeecCCCCCccchhhHHHH
Q 029203 123 INTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAW 158 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~W 158 (197)
....|.+|-..|.--..-.....||++||..|-..+
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 356999999999865443445579999999997654
No 142
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=70.22 E-value=5.7 Score=29.76 Aligned_cols=47 Identities=23% Similarity=0.509 Sum_probs=34.3
Q ss_pred CCCCCCccccccccccCCcceeecC--CCCCccchhhHHHHhhC----------CCCCcccCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMP--ECRHYFHLCCVDAWLKL----------NGSCPVCRN 170 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~--~C~H~FH~~CI~~Wl~~----------~~tCPlCR~ 170 (197)
....+..|.||-+ |.++.... .|...|+..||+.++.. ...|=+|.-
T Consensus 75 eDG~~~yC~wC~~----Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 75 DDGYQSYCTICCG----GREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp TTSSBSSCTTTSC----CSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCCcceeeEecC----CCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 4456789999975 44555544 59999999999999832 236988854
No 143
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=69.98 E-value=16 Score=22.26 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=12.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHh
Q 029203 14 NIGLGYSIAIALGFLVLLSTVLLASY 39 (197)
Q Consensus 14 ~~~~~~~I~i~i~~~vli~~i~l~~~ 39 (197)
...|.++++++.|+++ ++++++++|
T Consensus 10 vp~wiIi~svl~GLll-L~li~~~Lw 34 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLL-LTILVLAMW 34 (54)
T ss_dssp CCHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3445555555555544 333444444
No 144
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=69.52 E-value=1.4 Score=28.20 Aligned_cols=49 Identities=24% Similarity=0.512 Sum_probs=32.4
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHh---hCCCCCcccCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWL---KLNGSCPVCRN 170 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl---~~~~tCPlCR~ 170 (197)
...+...| ||-..+..+..|.-- .|..=||..|+.--- .....||.|+.
T Consensus 15 ~~~~~~~C-iC~~~~~~~~MIqCd-~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 15 YFQGLVTC-FCMKPFAGRPMIECN-ECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTTCCCS-TTCCCCTTCCEEECT-TTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCCceEe-ECCCcCCCCCEEECC-CCCccccccccCcCcccCCCcEECCCCCC
Confidence 34456778 998876643355444 499999999985422 13347999965
No 145
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=67.36 E-value=1.6 Score=34.77 Aligned_cols=45 Identities=33% Similarity=0.670 Sum_probs=27.2
Q ss_pred CccccccccccCCcceeecCCCCCccchhhHHHHhhC-----CCCCcccCC
Q 029203 125 TTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL-----NGSCPVCRN 170 (197)
Q Consensus 125 ~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~-----~~tCPlCR~ 170 (197)
..|.+|-..=. ++.+...-.|...||..|+++=|.. .-.||.|+.
T Consensus 175 c~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 36888876422 3334444469999999999965532 236999965
No 146
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=66.80 E-value=1.1 Score=31.27 Aligned_cols=45 Identities=22% Similarity=0.492 Sum_probs=29.7
Q ss_pred ccccccccccCCcceeecCCCCCccchhhHHHHhhC----CCCCcccCCC
Q 029203 126 TCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL----NGSCPVCRNS 171 (197)
Q Consensus 126 ~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~----~~tCPlCR~~ 171 (197)
.|.||-..-.+. ++..-..|...||..|+++=+.. ...||.|+.-
T Consensus 56 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDS-KMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCT-TEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCC-CeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 577776653332 34444469999999999875543 3369999553
No 147
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=65.44 E-value=7 Score=33.48 Aligned_cols=48 Identities=29% Similarity=0.622 Sum_probs=34.5
Q ss_pred CCCCCCccccccccccCCcceeecC--CCCCccchhhHHHHhh----------CCCCCcccCCC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMP--ECRHYFHLCCVDAWLK----------LNGSCPVCRNS 171 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~--~C~H~FH~~CI~~Wl~----------~~~tCPlCR~~ 171 (197)
....+..|.+|=+. .++.... .|...||..||+.++. ....|=+|...
T Consensus 89 ~DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 89 DDGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 34567899999753 4454444 6999999999999982 23479888654
No 148
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=64.45 E-value=4 Score=29.64 Aligned_cols=35 Identities=11% Similarity=0.157 Sum_probs=25.7
Q ss_pred CCCCcccccccccc-CCcceeecCCCCCccchhhHH
Q 029203 122 NINTTCSICLCEYK-DLEMLRMMPECRHYFHLCCVD 156 (197)
Q Consensus 122 ~~~~~CaICL~~~~-~~~~vr~l~~C~H~FH~~CI~ 156 (197)
.....|++|...|. -...-+....|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 45789999999994 323334555699999999855
No 149
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=64.15 E-value=7.9 Score=25.69 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=31.1
Q ss_pred CCCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhC
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL 161 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~ 161 (197)
.......|.+|.+.+++.-=|.--..=.|-||..|-...++.
T Consensus 11 ~~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 11 ANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 345678999999998887544322223799999999998864
No 150
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=63.99 E-value=1.4 Score=37.64 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=0.0
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHhhC-------CCCCcccCCCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL-------NGSCPVCRNSP 172 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~-------~~tCPlCR~~l 172 (197)
.....|.+|-..|.--..-.....||++||..|-..++.. ...|-.|-..+
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 4457899999998754333344469999999999776521 23677775543
No 151
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.93 E-value=8.3 Score=23.86 Aligned_cols=42 Identities=17% Similarity=0.232 Sum_probs=29.8
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
...|+-|-..+..++.+... -+..||.+|+ +|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEY--GGQTWHEHCF--------LCSGCEQPLGSR 46 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECS--TTCCEETTTC--------BCTTTCCBTTTS
T ss_pred CCCCccCCCccccCccEEEE--CccccCcccC--------eECCCCCcCCCC
Confidence 46899999988875444322 5788998873 688888777543
No 152
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=62.97 E-value=0.79 Score=25.39 Aligned_cols=18 Identities=17% Similarity=0.362 Sum_probs=12.6
Q ss_pred CCCccccccccccCCcce
Q 029203 123 INTTCSICLCEYKDLEML 140 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~v 140 (197)
+.+.|+||+.++...+.+
T Consensus 4 EGFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADEL 21 (34)
T ss_dssp EEEECTTTCCEESSHHHH
T ss_pred cccCCcHHHHHcCCHHHH
Confidence 357888888887765543
No 153
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.23 E-value=12 Score=23.56 Aligned_cols=42 Identities=19% Similarity=0.369 Sum_probs=32.0
Q ss_pred CCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 123 INTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
....|+.|-+.+..++.+.. -+..||.+| .+|-.|+..|...
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLTPG 49 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCCTT
T ss_pred CCCCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccCCC
Confidence 45789999999887776543 578999888 3688898877644
No 154
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=61.98 E-value=2.6 Score=26.08 Aligned_cols=44 Identities=36% Similarity=0.698 Sum_probs=27.5
Q ss_pred CCCCccccccccccCCcceeecCC--CC-CccchhhHHHHhhC----CCCCcccCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPE--CR-HYFHLCCVDAWLKL----NGSCPVCRN 170 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~--C~-H~FH~~CI~~Wl~~----~~tCPlCR~ 170 (197)
.+..-| ||-... .++.| .--+ |. .-||..|+. |.. +..||.|+.
T Consensus 7 ~e~~yC-~C~~~~-~g~mi-~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVS-YGEMI-GCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEEC-CSEEE-ECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCC-CCCee-EeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 345566 898764 34433 3334 55 689999998 433 336999964
No 155
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.48 E-value=6.2 Score=24.48 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=29.6
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
...|+.|-..+...+.+... -+..||.+|+ +|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY--KGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE--TTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceEEEE--CcCeecccCC--------cccccCCccCCC
Confidence 45899999988876544332 5678898874 688887776543
No 156
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=61.20 E-value=2.2 Score=26.42 Aligned_cols=44 Identities=34% Similarity=0.682 Sum_probs=26.9
Q ss_pred CCCCccccccccccCCcceeecCC--CC-CccchhhHHHHhhC----CCCCcccCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPE--CR-HYFHLCCVDAWLKL----NGSCPVCRN 170 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~--C~-H~FH~~CI~~Wl~~----~~tCPlCR~ 170 (197)
.+...| ||-... .++.| .--+ |. .-||..|+. |.. +..||.|+.
T Consensus 8 ~e~~~C-~C~~~~-~g~mi-~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVS-YGEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEEC-CSEEE-ECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcC-CCCEE-EeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 345566 898763 34333 3334 44 679999998 543 336999964
No 157
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=60.70 E-value=10 Score=20.92 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhee
Q 029203 17 LGYSIAIALGFLVLLSTVLLASYICC 42 (197)
Q Consensus 17 ~~~~I~i~i~~~vli~~i~l~~~~~~ 42 (197)
+.+.+.++.|++|++.++--.+.||.
T Consensus 6 l~malt~i~gl~vif~~lg~tflywr 31 (40)
T 2l9u_A 6 LTMALTVIAGLVVIFMMLGGTFLYWR 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCceeEEEc
Confidence 34555555565554444443444443
No 158
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=59.85 E-value=24 Score=21.45 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=12.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHh
Q 029203 14 NIGLGYSIAIALGFLVLLSTVLLASY 39 (197)
Q Consensus 14 ~~~~~~~I~i~i~~~vli~~i~l~~~ 39 (197)
...|.++++++.|++++ +++++++|
T Consensus 7 vp~WiIi~svl~GLLLL-~Lii~~Lw 31 (54)
T 2l8s_A 7 VPLWVILLSAFAGLLLL-MLLILALW 31 (54)
T ss_dssp CCTHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred CchHHHHHHHHHHHHHH-HHHHHHHH
Confidence 33455566665555543 33444444
No 159
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.81 E-value=8.9 Score=24.09 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=31.5
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
......|+-|-..+...+.+... -+..||.+|+ +|-.|+..|...
T Consensus 8 ~~~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 8 ALASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCCCCBCSSSCCBCCSTTTCEEE--TTEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCCCCchhcCCccCCCceEEEe--CccEeccccC--------eECCCCCCCCCC
Confidence 34467899999998765554322 5778998883 677887776543
No 160
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=58.42 E-value=1.5 Score=30.88 Aligned_cols=45 Identities=22% Similarity=0.566 Sum_probs=29.9
Q ss_pred ccccccccccCCcceeecCCCCCccchhhHHHHhhC----CCCCcccCCC
Q 029203 126 TCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKL----NGSCPVCRNS 171 (197)
Q Consensus 126 ~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~----~~tCPlCR~~ 171 (197)
.|.||-..-..++ +..--.|...||..|+++=|.. ...||.|+..
T Consensus 60 ~C~~C~~~~~~~~-ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 60 SCILCGTSENDDQ-LLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp CCTTTTCCTTTTT-EEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCcccccCCCCc-eEEcCCCCccccccccCCCccCCCCCCeECccccch
Confidence 6888877543443 4444459999999999864433 2358888653
No 161
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.87 E-value=15 Score=22.75 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=29.9
Q ss_pred CCccccccccccC--CcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCCC
Q 029203 124 NTTCSICLCEYKD--LEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTP 176 (197)
Q Consensus 124 ~~~CaICL~~~~~--~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~ 176 (197)
...|+-|-+.+.. .+.+.. . -+..||.+|+ +|-.|+..|....
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~-a-~~~~wH~~CF--------~C~~C~~~L~~~~ 49 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS-F-EERQWHNDCF--------NCKKCSLSLVGRG 49 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE-C-SSCEECTTTC--------BCSSSCCBCTTSC
T ss_pred CCCCcCCCccccCCCCcceEE-E-CCcccCcccC--------EeccCCCcCCCCc
Confidence 4689999998875 333322 2 6789998884 7888888775443
No 162
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=57.57 E-value=1.4 Score=27.97 Aligned_cols=47 Identities=26% Similarity=0.443 Sum_probs=29.0
Q ss_pred CCCccccccccccCCcceeec-CCCCCccchhhHHHH---h-----hCCCCCcccCC
Q 029203 123 INTTCSICLCEYKDLEMLRMM-PECRHYFHLCCVDAW---L-----KLNGSCPVCRN 170 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr~l-~~C~H~FH~~CI~~W---l-----~~~~tCPlCR~ 170 (197)
....| ||-.....+..|.-- +.|..=||..|+.-- . ..+..||.||.
T Consensus 9 ~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 34557 897766666555432 138888999997310 0 11357999974
No 163
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.72 E-value=13 Score=22.96 Aligned_cols=40 Identities=20% Similarity=0.396 Sum_probs=26.1
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 173 (197)
...|+.|-..+...+.+.. . -+..||.+|+ +|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-a-~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVV-A-LDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEE-C-SSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEE-E-CCCeEcccCC--------cccccCCcCC
Confidence 4578888887765433322 2 4678888773 6777877764
No 164
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=56.70 E-value=3.2 Score=25.93 Aligned_cols=44 Identities=36% Similarity=0.722 Sum_probs=27.2
Q ss_pred CCCCccccccccccCCcceeecCC--CC-CccchhhHHHHhhC----CCCCcccCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPE--CR-HYFHLCCVDAWLKL----NGSCPVCRN 170 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~--C~-H~FH~~CI~~Wl~~----~~tCPlCR~ 170 (197)
.+...| ||-... .++.| .--+ |. .-||..|+. |.. +..||.|+.
T Consensus 9 ~e~~yC-~C~~~~-~g~MI-~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVS-YGEMI-GCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEEC-CSEEE-ECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCC-CCCee-eeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 345567 897753 34433 3334 44 789999997 332 347999965
No 165
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=56.28 E-value=22 Score=19.84 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=13.1
Q ss_pred ccccchhHHHHHHHHHHHHHHHHH
Q 029203 12 LTNIGLGYSIAIALGFLVLLSTVL 35 (197)
Q Consensus 12 ~~~~~~~~~I~i~i~~~vli~~i~ 35 (197)
......++.++.++++.++..+++
T Consensus 9 s~GaIAGiVvG~v~gv~li~~l~~ 32 (38)
T 2k1k_A 9 TGGEIVAVIFGLLLGAALLLGILV 32 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceeeeehHHHHHHHHHHHHHH
Confidence 344445666666666655444433
No 166
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=55.91 E-value=7 Score=33.30 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=30.0
Q ss_pred CccccccccccCCcceeecCCCCCc--cchhhHHHHhhC--CCCCcccCCCCCCC
Q 029203 125 TTCSICLCEYKDLEMLRMMPECRHY--FHLCCVDAWLKL--NGSCPVCRNSPLPT 175 (197)
Q Consensus 125 ~~CaICL~~~~~~~~vr~l~~C~H~--FH~~CI~~Wl~~--~~tCPlCR~~l~~~ 175 (197)
..|++-+..+.. .+|-.. |.|+ |-..=+...... ...||+|...+...
T Consensus 250 L~CPlS~~ri~~--PvRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp SBCTTTSSBCSS--EEEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred ecCCCccccccc--cCcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccCHH
Confidence 578877777554 467776 9998 433333332222 34799998877443
No 167
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=55.84 E-value=7.2 Score=24.00 Aligned_cols=43 Identities=19% Similarity=0.367 Sum_probs=31.7
Q ss_pred CCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 123 INTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
....|+-|-..+...+.+... -+..||..|. +|-.|...|...
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 356899999998877765332 5778999885 688888777543
No 168
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.77 E-value=15 Score=23.56 Aligned_cols=44 Identities=27% Similarity=0.598 Sum_probs=31.4
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTP 176 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~ 176 (197)
.....|+-|-..+...+.+.. -+..||.+|+ +|-.|+..|....
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a---~~~~wH~~CF--------~C~~C~~~L~~~~ 56 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCV---NGHFFHRSCF--------RCHTCEATLWPGG 56 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCB---TTBCCBTTTC--------BCSSSCCBCCTTS
T ss_pred CCCCCCcccCCCcccceEEEE---CCCeeCCCcC--------EEcCCCCCcCCCc
Confidence 445789999998877666542 5789999883 5777777665443
No 169
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=55.70 E-value=9.9 Score=25.52 Aligned_cols=7 Identities=14% Similarity=0.605 Sum_probs=2.9
Q ss_pred HHHHhhe
Q 029203 35 LLASYIC 41 (197)
Q Consensus 35 ~l~~~~~ 41 (197)
++++++|
T Consensus 84 ii~~~~~ 90 (91)
T 3hd7_A 84 IIIVYFS 90 (91)
T ss_dssp HHHHTTC
T ss_pred HHHHHHh
Confidence 3344444
No 170
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=55.27 E-value=11 Score=21.27 Aligned_cols=11 Identities=27% Similarity=0.229 Sum_probs=5.2
Q ss_pred HHHHHhheecc
Q 029203 34 VLLASYICCRR 44 (197)
Q Consensus 34 i~l~~~~~~~~ 44 (197)
.++++.||+++
T Consensus 26 ~IllI~y~I~r 36 (40)
T 1afo_A 26 TILLISYGIRR 36 (40)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444455544
No 171
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=54.89 E-value=13 Score=24.40 Aligned_cols=16 Identities=13% Similarity=0.065 Sum_probs=7.0
Q ss_pred hhHHHHHHHHHHHHHH
Q 029203 17 LGYSIAIALGFLVLLS 32 (197)
Q Consensus 17 ~~~~I~i~i~~~vli~ 32 (197)
+++++++++|++++.+
T Consensus 11 ~~Iv~gvi~gilliGl 26 (79)
T 2knc_B 11 LVVLLSVMGAILLIGL 26 (79)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3444455444444333
No 172
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=54.53 E-value=10 Score=24.12 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=26.6
Q ss_pred CCCCCCccccccccccCCcceeecCCC-CCccchhhHHHH
Q 029203 120 SNNINTTCSICLCEYKDLEMLRMMPEC-RHYFHLCCVDAW 158 (197)
Q Consensus 120 ~~~~~~~CaICL~~~~~~~~vr~l~~C-~H~FH~~CI~~W 158 (197)
..++..-|.||.++ ..++-+. | +-+|+..|..+-
T Consensus 4 ~~ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 4 GSSGLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp SCCCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred cCcCCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 45567889999886 4577776 9 899999997664
No 173
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=54.51 E-value=7 Score=33.17 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=30.4
Q ss_pred CccccccccccCCcceeecCCCCCc--cchhhHHHHhhC--CCCCcccCCCCCCC
Q 029203 125 TTCSICLCEYKDLEMLRMMPECRHY--FHLCCVDAWLKL--NGSCPVCRNSPLPT 175 (197)
Q Consensus 125 ~~CaICL~~~~~~~~vr~l~~C~H~--FH~~CI~~Wl~~--~~tCPlCR~~l~~~ 175 (197)
..|+|-+..+.. .+|-.. |.|+ |-..=+...... ...||+|...+.+.
T Consensus 216 L~CPlS~~ri~~--P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp SBCTTTCSBCSS--EEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eeCCCccceecc--CCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCHH
Confidence 468877777654 466666 9998 443333333332 34799999877544
No 174
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=54.51 E-value=6.7 Score=29.13 Aligned_cols=47 Identities=23% Similarity=0.386 Sum_probs=30.9
Q ss_pred CCCCcccccccccc--CCcceeecCCCCCccchhhHHHHhhCCC--CCcccCC
Q 029203 122 NINTTCSICLCEYK--DLEMLRMMPECRHYFHLCCVDAWLKLNG--SCPVCRN 170 (197)
Q Consensus 122 ~~~~~CaICL~~~~--~~~~vr~l~~C~H~FH~~CI~~Wl~~~~--tCPlCR~ 170 (197)
..+..|++|...|. .+.. .....|.|.+|..|- .|+.... .|=+|+.
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g-~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSR-RQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCC-EECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCCccchhhcCccccccCCC-CcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 35789999999874 3323 344469999999997 2443322 4777744
No 175
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=54.13 E-value=7.9 Score=20.44 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=20.5
Q ss_pred CccccccccccCCcceeecCCCCCccchhhH
Q 029203 125 TTCSICLCEYKDLEMLRMMPECRHYFHLCCV 155 (197)
Q Consensus 125 ~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI 155 (197)
..|+.|-..+-..+++.. -|..||..|.
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~---~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC---LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS---SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEE---CCeEecccCC
Confidence 479999887766655542 6789999883
No 176
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=53.54 E-value=6.8 Score=24.73 Aligned_cols=12 Identities=17% Similarity=0.368 Sum_probs=5.7
Q ss_pred CccccccccccC
Q 029203 125 TTCSICLCEYKD 136 (197)
Q Consensus 125 ~~CaICL~~~~~ 136 (197)
+.|..|-..+..
T Consensus 28 F~C~~C~~~L~~ 39 (76)
T 1iml_A 28 LKCEKCGKTLTS 39 (76)
T ss_dssp CBCTTTCCBCCT
T ss_pred CCccccCccCCC
Confidence 445555444443
No 177
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.90 E-value=17 Score=23.28 Aligned_cols=41 Identities=22% Similarity=0.360 Sum_probs=31.0
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 173 (197)
.....|+-|-..+..++.+.. -+..||.+| .+|-.|+..|.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 346789999999887766654 468899888 36888887764
No 178
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=52.60 E-value=3.6 Score=28.71 Aligned_cols=25 Identities=24% Similarity=0.691 Sum_probs=16.1
Q ss_pred CCCCccchhhHHHHhhCCCCCcccCCCCCC
Q 029203 145 ECRHYFHLCCVDAWLKLNGSCPVCRNSPLP 174 (197)
Q Consensus 145 ~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 174 (197)
+||+.| ..=+.....||.|+..=+.
T Consensus 72 ~CG~~F-----~~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 72 KCGFVF-----KAEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp TTCCBC-----CCCSSCCSSCSSSCCCCBC
T ss_pred hCcCee-----cccCCCCCCCcCCCCCccC
Confidence 499999 1112334689999886543
No 179
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.84 E-value=14 Score=23.46 Aligned_cols=42 Identities=14% Similarity=0.272 Sum_probs=30.7
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
...|+.|-..+..++.+... -+..||.+|+ +|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC--SSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEEEE--CccccccccC--------chhhCCCccCCC
Confidence 46899999998877664332 5789998884 688888777543
No 180
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=51.51 E-value=9.5 Score=25.39 Aligned_cols=19 Identities=5% Similarity=-0.160 Sum_probs=13.7
Q ss_pred ecCCCCCccchhhHHHHhhCCCCCccc
Q 029203 142 MMPECRHYFHLCCVDAWLKLNGSCPVC 168 (197)
Q Consensus 142 ~l~~C~H~FH~~CI~~Wl~~~~tCPlC 168 (197)
.++ |...|++.| -..|.+|
T Consensus 19 ~T~-C~~CyCKkC-------c~HCq~C 37 (86)
T 1tac_A 19 KTA-SNRAHAKKS-------AYHSQVA 37 (86)
T ss_dssp TTC-SSCSSTTTT-------TTTCCCS
T ss_pred CCC-CCCceecch-------hhhhhHH
Confidence 445 888888888 3457777
No 181
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=50.04 E-value=5.2 Score=25.66 Aligned_cols=41 Identities=29% Similarity=0.571 Sum_probs=28.9
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
...|+.|-..+.+++.+.. -+..||.+|+ +|-.|+..|...
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~CF--------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCCF--------LCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSSE--------ECSSSCCEECSS
T ss_pred CCcCcCcCccccCceeEEe---CCcccccccC--------ccCCCCCCCCCC
Confidence 4689999998877765543 5778888874 577787776543
No 182
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=49.83 E-value=3.9 Score=24.37 Aligned_cols=41 Identities=24% Similarity=0.593 Sum_probs=26.1
Q ss_pred cccccccCCcceeecCCCCCccchhhHHHHh---hCCCCCcccCC
Q 029203 129 ICLCEYKDLEMLRMMPECRHYFHLCCVDAWL---KLNGSCPVCRN 170 (197)
Q Consensus 129 ICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl---~~~~tCPlCR~ 170 (197)
||-.....+..|.-- .|..=||..|+.--- ..+..||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd-~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECN-ECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECT-TTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcC-CCCccccccccCCCcccCCCcEECcCCCC
Confidence 676655533445444 489999999985322 23447999975
No 183
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=49.59 E-value=6.5 Score=27.10 Aligned_cols=12 Identities=25% Similarity=0.780 Sum_probs=10.8
Q ss_pred ccchhhHHHHhh
Q 029203 149 YFHLCCVDAWLK 160 (197)
Q Consensus 149 ~FH~~CI~~Wl~ 160 (197)
-||+.|+..|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999994
No 184
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=49.50 E-value=6.5 Score=27.04 Aligned_cols=12 Identities=33% Similarity=0.786 Sum_probs=10.8
Q ss_pred ccchhhHHHHhh
Q 029203 149 YFHLCCVDAWLK 160 (197)
Q Consensus 149 ~FH~~CI~~Wl~ 160 (197)
-||..|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999995
No 185
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=47.62 E-value=29 Score=21.05 Aligned_cols=7 Identities=14% Similarity=-0.107 Sum_probs=2.5
Q ss_pred HHHhhee
Q 029203 36 LASYICC 42 (197)
Q Consensus 36 l~~~~~~ 42 (197)
++++..+
T Consensus 25 Lii~~Lw 31 (54)
T 2l8s_A 25 LLILALW 31 (54)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 186
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.32 E-value=18 Score=22.22 Aligned_cols=40 Identities=15% Similarity=0.418 Sum_probs=27.6
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
...|+-|-+.+.. ..+.. -+..||.+|+ +|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIKA---MNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS-CCEEE---TTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecc-eEEEE---CcccccccCC--------EeCCCCCcCCCC
Confidence 4679999888763 33332 5678888884 688888777554
No 187
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.21 E-value=23 Score=23.08 Aligned_cols=42 Identities=26% Similarity=0.520 Sum_probs=29.6
Q ss_pred CCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 123 INTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
....|+-|-..+...+.+. . -+..||.+|+ +|-.|...|...
T Consensus 14 ~~~~C~~C~~~I~~~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLL--A-NQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEE--C-SSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CCCcCccCCCccCCceeEE--E-CCCEECCCCC--------eeCCCCCCCCCC
Confidence 3568999998887766553 2 6788888873 577777766544
No 188
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=46.53 E-value=4.5 Score=25.94 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=13.5
Q ss_pred HHHhhCCCCCcccCCCCC
Q 029203 156 DAWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 156 ~~Wl~~~~tCPlCR~~l~ 173 (197)
++||..--.||.|+.+|.
T Consensus 2 d~~LLeiL~CP~ck~~L~ 19 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLK 19 (69)
T ss_dssp -CCGGGTCCCTTTCCCCE
T ss_pred ChHHHhheeCCCCCCcCe
Confidence 556777778999998874
No 189
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=46.28 E-value=44 Score=21.48 Aligned_cols=42 Identities=17% Similarity=0.346 Sum_probs=29.9
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
.....|+-|-+.+.. ..+. . -+..||.+|+ +|-.|+..|...
T Consensus 23 ~~~~~C~~C~~~I~~-~~~~--a-~~~~~H~~CF--------~C~~C~~~L~~~ 64 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG-AVVK--A-RDKYRHPECF--------VCADCNLNLKQK 64 (89)
T ss_dssp CSCCBCTTTCCBCCS-CCEE--S-SSCEECTTTC--------CCSSSCCCTTTS
T ss_pred CcCCCcccCCCEecc-cEEE--E-CCceECccCC--------EecCCCCCCCCC
Confidence 445789999998875 3232 2 6789999883 688888877543
No 190
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.56 E-value=22 Score=22.18 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=27.6
Q ss_pred CCccccccccccC--CcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCC
Q 029203 124 NTTCSICLCEYKD--LEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 124 ~~~CaICL~~~~~--~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 173 (197)
...|+.|-..+.. ..++.. . -+..||.+|+ +|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~-a-~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFIC-F-QDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEE-E-TTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEE-E-CCcccCcccC--------ChhhCCCcCC
Confidence 4689999998875 333322 2 6788999884 6777777664
No 191
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=45.05 E-value=23 Score=21.36 Aligned_cols=40 Identities=15% Similarity=0.271 Sum_probs=28.8
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
...|+.|-..+. ++.+ .. -+..||.+| .+|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~-~~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~~ 44 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVV--NA-MGKQWHVEH--------FVCAKCEKPFLGH 44 (66)
T ss_dssp CCEETTTTEECC-SCEE--CC-TTSBEETTT--------CBCTTTCCBCSSS
T ss_pred CCCCcccCCEec-ceEE--EE-CccccccCc--------CEECCCCCCCCCC
Confidence 468999999887 4333 23 678999888 3688888877543
No 192
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.41 E-value=15 Score=23.35 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=28.3
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 173 (197)
.....|+-|-+.+.. ..+ .. -+..||.+|+ +|-.|+..|.
T Consensus 13 ~~~~~C~~C~~~I~~-~~~--~a-~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 13 QKLPMCDKCGTGIVG-VFV--KL-RDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCCSSSCCCCCS-SCE--EC-SSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCCccccCCCCccC-cEE--EE-CcceeCcCcC--------eeCCCCCCCC
Confidence 446789999988875 323 22 6789999884 6777877664
No 193
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.03 E-value=34 Score=21.63 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=29.6
Q ss_pred CCCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 121 NNINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
......|+-|-..+. +..+. . -+..||.+| .+|-.|+..|...
T Consensus 12 ~~~~~~C~~C~~~I~-~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 12 GLGKYICQKCHAIID-EQPLI--F-KNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCCCCBCTTTCCBCC-SCCCC--C-SSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred ccCCCCCccCCCEec-ceEEE--E-CcceeCCCC--------CEeCCCCCccCCC
Confidence 344578999998887 33332 2 678889887 3788888777543
No 194
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.02 E-value=21 Score=21.79 Aligned_cols=41 Identities=17% Similarity=0.322 Sum_probs=28.3
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTP 176 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~ 176 (197)
...|+-|-..+... .+. . -+..||.+|+ +|-.|+..|....
T Consensus 5 ~~~C~~C~~~I~~~-~~~--a-~~~~~H~~CF--------~C~~C~~~L~~~~ 45 (70)
T 2d8z_A 5 SSGCVQCKKPITTG-GVT--Y-REQPWHKECF--------VCTACRKQLSGQR 45 (70)
T ss_dssp CCBCSSSCCBCCSS-EEE--S-SSSEEETTTS--------BCSSSCCBCTTSC
T ss_pred CCCCcccCCeeccc-eEE--E-CccccCCCCC--------ccCCCCCcCCcCc
Confidence 45799998888643 332 2 6788998873 6888888775433
No 195
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=43.14 E-value=5 Score=37.90 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=0.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHH
Q 029203 13 TNIGLGYSIAIALGFLVLLSTVLL 36 (197)
Q Consensus 13 ~~~~~~~~I~i~i~~~vli~~i~l 36 (197)
.+++++.+|+|+++++++++++++
T Consensus 700 ~~l~~~aii~il~~~~~ll~~~ll 723 (880)
T 1q55_A 700 GGFDLPIILVILGSVLALLILFLL 723 (880)
T ss_dssp ------------------------
T ss_pred cCccHHHHHHHHHHHHHHHHHHHH
Confidence 345555567776666665554433
No 196
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=43.06 E-value=4.4 Score=25.87 Aligned_cols=18 Identities=22% Similarity=0.170 Sum_probs=14.1
Q ss_pred HHHhhCCCCCcccCCCCC
Q 029203 156 DAWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 156 ~~Wl~~~~tCPlCR~~l~ 173 (197)
++||..--.||.|+.+|.
T Consensus 4 d~~LLeiL~CP~ck~~L~ 21 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLR 21 (67)
T ss_dssp CGGGTCCCBCTTTCCBCE
T ss_pred CHHHHHHhCCCCCCCcCe
Confidence 467777778999999774
No 197
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=42.52 E-value=16 Score=25.39 Aligned_cols=44 Identities=9% Similarity=0.070 Sum_probs=26.6
Q ss_pred CCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCC
Q 029203 123 INTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRN 170 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~ 170 (197)
.-+.|..|-..+..++..... =+.+||..|....+. ..|..|..
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~--~g~~yC~~cy~~~~~--~~~~~~~~ 78 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLI--NSDIVCEQDIYEWTK--INGGSGGS 78 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEEC--SSSEEEGGGHHHHHH--HHTCCCCC
T ss_pred ccCccccCCCCCCCCCcEEee--CCEEEcHHHhHHHhc--cccCCCCC
Confidence 446778887777555544332 467888888777653 23444543
No 198
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.43 E-value=16 Score=23.14 Aligned_cols=45 Identities=29% Similarity=0.487 Sum_probs=27.0
Q ss_pred CCCccccccccccCCcceeecCCCC---CccchhhHHHHhhC----CCCCcccCCCC
Q 029203 123 INTTCSICLCEYKDLEMLRMMPECR---HYFHLCCVDAWLKL----NGSCPVCRNSP 172 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr~l~~C~---H~FH~~CI~~Wl~~----~~tCPlCR~~l 172 (197)
+...| ||-.. ..++.|.-- +|. .-||..|+. |.. ...||.|+...
T Consensus 5 ~~~yC-~C~~~-~~g~MI~CD-~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 5 SSGYC-ICNQV-SYGEMVGCD-NQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCCCS-TTSCC-CCSSEECCS-CTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHHHH
T ss_pred CCeEE-EcCCC-CCCCEeEeC-CCCCCccCCcccccc--cCcCCCCCEECCCCCccc
Confidence 34556 58665 344444322 353 689999997 332 33699997654
No 199
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=40.12 E-value=5.5 Score=20.90 Aligned_cols=11 Identities=27% Similarity=0.806 Sum_probs=7.8
Q ss_pred CCCCcccCCCC
Q 029203 162 NGSCPVCRNSP 172 (197)
Q Consensus 162 ~~tCPlCR~~l 172 (197)
+.+||+|+..+
T Consensus 3 k~~CpvCk~q~ 13 (28)
T 2jvx_A 3 DFCCPKCQYQA 13 (28)
T ss_dssp CEECTTSSCEE
T ss_pred cccCccccccC
Confidence 34788888755
No 200
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=38.82 E-value=4.9 Score=24.91 Aligned_cols=38 Identities=18% Similarity=0.454 Sum_probs=26.7
Q ss_pred CCccccccccccCCcceeecC--C--CCCccchhhHHHHhhC
Q 029203 124 NTTCSICLCEYKDLEMLRMMP--E--CRHYFHLCCVDAWLKL 161 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~--~--C~H~FH~~CI~~Wl~~ 161 (197)
...|+-|...++..+-.-.+. . |+|.|+..|..+|-..
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 457888888877766433333 3 7889999998888644
No 201
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=38.45 E-value=16 Score=28.22 Aligned_cols=25 Identities=20% Similarity=0.535 Sum_probs=15.9
Q ss_pred eeecCCCCCccchhhHHHHhhCCCCCcccCCC
Q 029203 140 LRMMPECRHYFHLCCVDAWLKLNGSCPVCRNS 171 (197)
Q Consensus 140 vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~ 171 (197)
..+.+.|||++- . ..-..||.|..+
T Consensus 171 ~~~C~~CG~i~~-g------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHK-G------EDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEE-S------SCCSBCTTTCCB
T ss_pred EEEECCCCCEEc-C------cCCCCCCCCCCC
Confidence 445556999964 2 122489999763
No 202
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=37.82 E-value=38 Score=22.23 Aligned_cols=46 Identities=13% Similarity=0.247 Sum_probs=24.8
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLP 174 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 174 (197)
=+.|..|-..+... ... .. =+.+|+..|..+ .....|..|...+.+
T Consensus 33 CF~C~~C~~~L~~~-~~~-~~-~g~~yC~~cy~~--~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 33 CFRCAKCLHPLANE-TFV-AK-DNKILCNKCTTR--EDSPKCKGCFKAIVA 78 (101)
T ss_dssp TCCCSSSCCCTTSS-CCE-EE-TTEEECHHHHTT--CCCCBCSSSCCBCCS
T ss_pred CCcccccCCCCCcC-eeE-Cc-CCEEEChhHhhh--hcCCccccCCCcccc
Confidence 35667776666432 111 11 456666666432 223468888777654
No 203
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=37.72 E-value=12 Score=23.87 Aligned_cols=47 Identities=26% Similarity=0.557 Sum_probs=30.3
Q ss_pred CCccccccccccCC-cceeecCCCCCccchhhHHHHhh-----CCCCCcccCCCC
Q 029203 124 NTTCSICLCEYKDL-EMLRMMPECRHYFHLCCVDAWLK-----LNGSCPVCRNSP 172 (197)
Q Consensus 124 ~~~CaICL~~~~~~-~~vr~l~~C~H~FH~~CI~~Wl~-----~~~tCPlCR~~l 172 (197)
...| ||-..+..+ ..|.-- .|.-=||..|+.---. ....||.|+...
T Consensus 10 ~~yC-iC~~~~~~~~~MI~Cd-~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 10 PVYC-VCRLPYDVTRFMIECD-ACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp CEET-TTTEECCTTSCEEECT-TTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred eeEE-ECCCcCCCCCCEEEcC-CCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 3444 898877543 344433 5999999999953211 245799997643
No 204
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=37.56 E-value=11 Score=25.92 Aligned_cols=39 Identities=15% Similarity=0.364 Sum_probs=24.0
Q ss_pred CccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCC
Q 029203 125 TTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSP 172 (197)
Q Consensus 125 ~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l 172 (197)
..|++|-.+++...... ++..|-.. +....-||-|.++|
T Consensus 33 ~~CP~Cq~eL~~~g~~~--------hC~~C~~~-f~~~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHA--------RCRSCGEF-IEMKALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEEETTEE--------EETTTCCE-EEEEEECTTTCSBC
T ss_pred ccCccCCCcceecCCEE--------ECccccch-hhccccCcchhhHH
Confidence 68999988876543222 23333221 34556799998876
No 205
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=36.82 E-value=18 Score=27.10 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=16.2
Q ss_pred ceeecCCCCCccchhhHHHHhhCCCCCcccCC
Q 029203 139 MLRMMPECRHYFHLCCVDAWLKLNGSCPVCRN 170 (197)
Q Consensus 139 ~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~ 170 (197)
...+.+.|||++-. ..-..||+|..
T Consensus 137 ~~~~C~~CG~i~~~-------~~p~~CP~Cg~ 161 (170)
T 3pwf_A 137 KVYICPICGYTAVD-------EAPEYCPVCGA 161 (170)
T ss_dssp CEEECTTTCCEEES-------CCCSBCTTTCC
T ss_pred CeeEeCCCCCeeCC-------CCCCCCCCCCC
Confidence 34455569998752 22338999975
No 206
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=36.75 E-value=11 Score=25.34 Aligned_cols=44 Identities=25% Similarity=0.477 Sum_probs=27.3
Q ss_pred CCCCccccccccccCCcceeecCCCC---CccchhhHHHHhhC----CCCCcc-cCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECR---HYFHLCCVDAWLKL----NGSCPV-CRN 170 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~---H~FH~~CI~~Wl~~----~~tCPl-CR~ 170 (197)
.+...| ||-... .++.|. .-+|. .-||..|+. |.. +..||. |+.
T Consensus 24 ~~~~yC-iC~~~~-~g~MI~-CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVS-YGPMVA-CDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCC-SSSEEC-CCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCC-CCCEEE-ecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 445677 997643 344333 33454 679999996 332 347999 964
No 207
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=36.56 E-value=17 Score=26.73 Aligned_cols=39 Identities=26% Similarity=0.633 Sum_probs=22.1
Q ss_pred CccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCC
Q 029203 125 TTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 125 ~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 173 (197)
..|+.|-..+...+.+.. . -++.||.+|. +|-.|...|.
T Consensus 66 ~~C~~C~~~I~~~~~v~~-a-~~~~~H~~CF--------~C~~C~~~L~ 104 (169)
T 2rgt_A 66 TKCAACQLGIPPTQVVRR-A-QDFVYHLHCF--------ACVVCKRQLA 104 (169)
T ss_dssp CBCTTTCCBCCTTSEEEE-E-TTEEEEGGGC--------BCTTTCCBCC
T ss_pred ccccccccccCCCcEEEE-c-CCceEeeCCC--------cCCCCCCCCC
Confidence 456667666555443322 1 4667777763 5666666553
No 208
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.49 E-value=30 Score=21.86 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=28.3
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLP 174 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 174 (197)
...|+.|-..+..++.+... -+..||..|+ +|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFY--EDRHFHEGCF--------RCCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCC--SSCCCBTTTS--------BCTTTCCBCSS
T ss_pred CCcCccCCCccccCcEEEEe--CCccccccCC--------eecCCCCccCC
Confidence 45899999988854433221 4788998873 57788777654
No 209
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=36.18 E-value=3.6 Score=25.26 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=12.9
Q ss_pred HHHhhCCCCCcccCCCCC
Q 029203 156 DAWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 156 ~~Wl~~~~tCPlCR~~l~ 173 (197)
++||..--.||.|+.+|.
T Consensus 4 d~~lL~iL~CP~c~~~L~ 21 (56)
T 2kpi_A 4 EAGLLEILACPACHAPLE 21 (56)
T ss_dssp CCSCTTSCCCSSSCSCEE
T ss_pred CHHHHhheeCCCCCCcce
Confidence 345556668999999763
No 210
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.49 E-value=29 Score=21.08 Aligned_cols=39 Identities=15% Similarity=0.355 Sum_probs=26.8
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLP 174 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 174 (197)
...|+-|-+.+.. +.+.. -+..||.+|+ +|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~~ 43 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGITY---QDQPWHADCF--------VCVTCSKKLAG 43 (69)
T ss_dssp CCCCSSSCCCCCT-TCEEE---TTEEECTTTT--------BCTTTCCBCTT
T ss_pred cCCCcccCCEeCc-ceEEE---CccccccCcC--------EECCCCCCCCC
Confidence 4578889888764 33332 5678888874 68888877753
No 211
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.28 E-value=31 Score=22.34 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=29.3
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
.....|+-|-..+. ++.+. . -+..||.+|+ +|-.|+..|...
T Consensus 23 ~~~~~C~~C~~~I~-~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~~~ 64 (90)
T 2dar_A 23 KRTPMCAHCNQVIR-GPFLV--A-LGKSWHPEEF--------NCAHCKNTMAYI 64 (90)
T ss_dssp TCCCBBSSSCCBCC-SCEEE--E-TTEEECTTTC--------BCSSSCCBCSSS
T ss_pred CCCCCCccCCCEec-ceEEE--E-CCccccccCC--------ccCCCCCCCCCC
Confidence 34578999998884 33333 2 6789998874 688888877643
No 212
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=34.76 E-value=35 Score=21.16 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=29.5
Q ss_pred CCccccccccccC---CcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 124 NTTCSICLCEYKD---LEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 124 ~~~CaICL~~~~~---~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
...|+-|-..+.. ...+.. . =+..||.+| .+|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~~~ 59 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVA-Y-EGQSWHDYC--------FHCKKCSVNLANK 59 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEE-E-TTEEEETTT--------CBCSSSCCBCTTS
T ss_pred CccCcccCCcccCCCCCceeEE-E-CcceeCccc--------CEehhcCCCCCCC
Confidence 4689999998885 323322 2 578999888 3688898887644
No 213
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=34.74 E-value=8.3 Score=25.69 Aligned_cols=12 Identities=17% Similarity=0.575 Sum_probs=8.4
Q ss_pred ecCCCCCccchhh
Q 029203 142 MMPECRHYFHLCC 154 (197)
Q Consensus 142 ~l~~C~H~FH~~C 154 (197)
.++ |...||+.|
T Consensus 19 ~T~-Cn~CYCKkC 30 (86)
T 3mi9_C 19 KTA-CTNCYCKKC 30 (86)
T ss_dssp SSC-CCSCCSTTG
T ss_pred CCC-CCCccccch
Confidence 345 888887776
No 214
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=33.98 E-value=3.2 Score=27.20 Aligned_cols=19 Identities=32% Similarity=0.781 Sum_probs=15.2
Q ss_pred CCCCccchhhHHHHhhCCCCC
Q 029203 145 ECRHYFHLCCVDAWLKLNGSC 165 (197)
Q Consensus 145 ~C~H~FH~~CI~~Wl~~~~tC 165 (197)
.|+|.|+..|-..|=. .+|
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp CCSCCEETTTTEECCS--SCS
T ss_pred CCCCeeccccCccccC--Ccc
Confidence 5999999999988733 455
No 215
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=33.57 E-value=4.6 Score=25.81 Aligned_cols=17 Identities=18% Similarity=0.073 Sum_probs=12.1
Q ss_pred HHhhCCCCCcccCCCCC
Q 029203 157 AWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 157 ~Wl~~~~tCPlCR~~l~ 173 (197)
+||..--.||.|+.+|.
T Consensus 3 ~~LL~iL~CP~ck~~L~ 19 (68)
T 2jr6_A 3 KKFLDILVCPVTKGRLE 19 (68)
T ss_dssp CSSSCCCBCSSSCCBCE
T ss_pred hHHhhheECCCCCCcCe
Confidence 45555568999998764
No 216
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=32.78 E-value=35 Score=23.84 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=30.1
Q ss_pred CCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCC
Q 029203 123 INTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 173 (197)
....|+-|-..+.....+.. -+..||.+| .+|-.|+..|.
T Consensus 60 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGG
T ss_pred cCCcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCccc
Confidence 35689999998876543433 678999988 47889988875
No 217
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=32.19 E-value=24 Score=26.38 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=19.4
Q ss_pred ccccccccccCCcceeecCCCCCccchhhH
Q 029203 126 TCSICLCEYKDLEMLRMMPECRHYFHLCCV 155 (197)
Q Consensus 126 ~CaICL~~~~~~~~vr~l~~C~H~FH~~CI 155 (197)
.|+.|-..+...+.+... -++.||..|.
T Consensus 71 ~C~~C~~~I~~~e~~i~a--~~~~~H~~CF 98 (188)
T 1rut_X 71 ACSACGQSIPASELVMRA--QGNVYHLKCF 98 (188)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEECGGGC
T ss_pred ccccCCCccccCcEEEEc--CCCEEeCCCC
Confidence 688888887765544322 5788888883
No 218
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.12 E-value=42 Score=21.05 Aligned_cols=38 Identities=26% Similarity=0.423 Sum_probs=25.5
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 173 (197)
...|+-|-..+. ++.+.. -+..||.+|+ +|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~-~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 52 (81)
T 1v6g_A 15 GTRCFSCDQFIE-GEVVSA---LGKTYHPDCF--------VCAVCRLPFP 52 (81)
T ss_dssp CCBCTTTCCBCC-SCCEEE---TTEEECTTTS--------SCSSSCCCCC
T ss_pred CCcCccccCEec-cceEEE---CCceeCccCC--------ccccCCCCCC
Confidence 358999998877 333332 5788998884 4666666554
No 219
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=31.44 E-value=11 Score=33.12 Aligned_cols=49 Identities=22% Similarity=0.419 Sum_probs=30.9
Q ss_pred CCCCccccccccccCCcceeecCCCCCccchhhHHHHhh-----CCCCCcccCCC
Q 029203 122 NINTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLK-----LNGSCPVCRNS 171 (197)
Q Consensus 122 ~~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~-----~~~tCPlCR~~ 171 (197)
.....| ||-..+..+......-.|.-=||..|+.---. .+..||.|+..
T Consensus 35 ~~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 35 PPPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CCCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 334456 99888763333333335999999999943211 23479999753
No 220
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=31.02 E-value=20 Score=24.98 Aligned_cols=25 Identities=24% Similarity=0.550 Sum_probs=17.1
Q ss_pred ecCCCCCccchhhHHHHhhCCC-CCcccCCCC
Q 029203 142 MMPECRHYFHLCCVDAWLKLNG-SCPVCRNSP 172 (197)
Q Consensus 142 ~l~~C~H~FH~~CI~~Wl~~~~-tCPlCR~~l 172 (197)
...+|||.|-.+ .... .||.|....
T Consensus 75 ~C~~CG~~~e~~------~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 75 ECKDCSHVFKPN------ALDYGVCEKCHSKN 100 (119)
T ss_dssp ECSSSSCEECSC------CSTTCCCSSSSSCC
T ss_pred EcCCCCCEEeCC------CCCCCcCccccCCC
Confidence 333599998762 3456 799997753
No 221
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=30.27 E-value=4.6 Score=25.81 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=11.5
Q ss_pred HHhhCCCCCcccCCCCC
Q 029203 157 AWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 157 ~Wl~~~~tCPlCR~~l~ 173 (197)
+||..--.||.|+.+|.
T Consensus 3 ~~LL~iL~CP~ck~~L~ 19 (68)
T 2hf1_A 3 AKFLEILVCPLCKGPLV 19 (68)
T ss_dssp CCCEEECBCTTTCCBCE
T ss_pred hHHhhheECCCCCCcCe
Confidence 34444557999998764
No 222
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=29.41 E-value=55 Score=20.26 Aligned_cols=37 Identities=16% Similarity=0.311 Sum_probs=29.6
Q ss_pred CCCccccccccccCCcceeecCCCCCccchh-hHHHHh
Q 029203 123 INTTCSICLCEYKDLEMLRMMPECRHYFHLC-CVDAWL 159 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~-CI~~Wl 159 (197)
-...|+-|-.++..|.....-...-|+||.. ||..+-
T Consensus 19 ~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~fs 56 (62)
T 2das_A 19 AKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFS 56 (62)
T ss_dssp SSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHHC
T ss_pred cccChhhccchhhcCceeeeecCchhheechHHHcccC
Confidence 4679999999999998665555688999984 998753
No 223
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=29.05 E-value=13 Score=27.43 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=15.3
Q ss_pred cCCCCCccchhhHHHHhhCCCCCcccCCCC
Q 029203 143 MPECRHYFHLCCVDAWLKLNGSCPVCRNSP 172 (197)
Q Consensus 143 l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l 172 (197)
...|||.|-.. .....||.|-.++
T Consensus 135 C~~Cg~~~~~~------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 135 CIGCGRKFSTL------PPGGVCPDCGSKV 158 (165)
T ss_dssp ESSSCCEESSC------CGGGBCTTTCCBE
T ss_pred CCCCCCcccCC------CCCCcCCCCCCcc
Confidence 33588888543 2234799998765
No 224
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=28.87 E-value=5 Score=25.78 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=11.8
Q ss_pred HHhhCCCCCcccCCCCC
Q 029203 157 AWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 157 ~Wl~~~~tCPlCR~~l~ 173 (197)
+||..--.||.|+.+|.
T Consensus 3 ~~LL~iL~CP~ck~~L~ 19 (70)
T 2js4_A 3 SRLLDILVCPVCKGRLE 19 (70)
T ss_dssp CCCCCCCBCTTTCCBEE
T ss_pred hHHhhheECCCCCCcCE
Confidence 34555567999988764
No 225
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=28.65 E-value=83 Score=17.87 Aligned_cols=6 Identities=0% Similarity=0.036 Sum_probs=2.3
Q ss_pred HHHHHH
Q 029203 22 AIALGF 27 (197)
Q Consensus 22 ~i~i~~ 27 (197)
+++.++
T Consensus 15 gvi~~i 20 (43)
T 2k9j_B 15 SVMGAI 20 (43)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 226
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=28.40 E-value=24 Score=26.27 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=24.1
Q ss_pred CCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCC
Q 029203 123 INTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLP 174 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 174 (197)
.-+.|+.|-..+.... . .. =+.+||..|-.+ .-...|..|...+.+
T Consensus 86 ~CF~C~~C~~~L~~~~-f--~~-~g~~yC~~~y~~--~f~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERC-F--SR-GESVYCKDDFFK--RFGTKCAACQLGIPP 131 (182)
T ss_dssp STTSCTTTCCCCSSCC-E--EE-TTEEECHHHHHH--TTSCCCTTTCCCCCS
T ss_pred ccCccCCCCCccCCCc-e--eE-CCEeeecCcccc--ccccccccCCCccCC
Confidence 3567777776665432 1 11 456666665543 223456666555543
No 227
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=27.81 E-value=27 Score=23.01 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=8.9
Q ss_pred CccccccccccCCcc
Q 029203 125 TTCSICLCEYKDLEM 139 (197)
Q Consensus 125 ~~CaICL~~~~~~~~ 139 (197)
..|+.|-.++.....
T Consensus 3 ~~CP~C~~~l~~~~~ 17 (81)
T 2jrp_A 3 ITCPVCHHALERNGD 17 (81)
T ss_dssp CCCSSSCSCCEECSS
T ss_pred CCCCCCCCccccCCC
Confidence 457777666654433
No 228
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=27.52 E-value=41 Score=20.21 Aligned_cols=41 Identities=15% Similarity=0.241 Sum_probs=27.9
Q ss_pred CccccccccccCCcceeecCCCCCccc--hhhHHHHhhCCCCCcccCCCCCCC
Q 029203 125 TTCSICLCEYKDLEMLRMMPECRHYFH--LCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 125 ~~CaICL~~~~~~~~vr~l~~C~H~FH--~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
..|+-|-..+..++.... . -+..|| .+| .+|-.|+.+|...
T Consensus 3 ~~C~~C~~~I~~~~~~v~-a-~~~~wH~~~~C--------F~C~~C~~~L~~~ 45 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVT-Y-NNFSWHASTEC--------FLCSCCSKCLIGQ 45 (65)
T ss_dssp EECTTTSSEECTTSCEEE-E-TTEEEETTTTT--------SBCTTTCCBCTTS
T ss_pred CCCcCCCCeeccCceEEE-E-CCCccCCCCCC--------EECCCCCCcCCCC
Confidence 468889888876433322 2 578899 888 3688888777543
No 229
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=26.64 E-value=47 Score=22.80 Aligned_cols=6 Identities=33% Similarity=0.224 Sum_probs=2.4
Q ss_pred hHHHHH
Q 029203 18 GYSIAI 23 (197)
Q Consensus 18 ~~~I~i 23 (197)
.|++.+
T Consensus 86 ~~i~l~ 91 (109)
T 3hd7_B 86 KIMIII 91 (109)
T ss_dssp HHHHHH
T ss_pred ceehHH
Confidence 344433
No 230
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=26.55 E-value=5.9 Score=26.19 Aligned_cols=28 Identities=25% Similarity=0.642 Sum_probs=19.5
Q ss_pred eecCCCCCccchhhHHHHhhCCC--CCccc
Q 029203 141 RMMPECRHYFHLCCVDAWLKLNG--SCPVC 168 (197)
Q Consensus 141 r~l~~C~H~FH~~CI~~Wl~~~~--tCPlC 168 (197)
...+.|+|.|+..|-.+|=+.|. +|..-
T Consensus 44 v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~ 73 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQWEEQHRGRSCEDF 73 (86)
T ss_dssp EECTTTCCEECSSSCSBCCTTTTTSCHHHH
T ss_pred eEeCCCCCccccccCCchhhcCCCCChHHH
Confidence 34445999999999988855554 56543
No 231
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=25.60 E-value=24 Score=26.77 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=15.3
Q ss_pred eeecCCCCCccchhhHHHHhhCCCCCcccCCC
Q 029203 140 LRMMPECRHYFHLCCVDAWLKLNGSCPVCRNS 171 (197)
Q Consensus 140 vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~ 171 (197)
..+.+.|||++--+ ..-..||.|..+
T Consensus 155 ~~~C~~CG~~~~g~------~~p~~CP~C~~~ 180 (191)
T 1lko_A 155 KWRCRNCGYVHEGT------GAPELCPACAHP 180 (191)
T ss_dssp EEEETTTCCEEEEE------ECCSBCTTTCCB
T ss_pred eEEECCCCCEeeCC------CCCCCCCCCcCC
Confidence 33444588886422 122389999764
No 232
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.35 E-value=1e+02 Score=18.84 Aligned_cols=38 Identities=18% Similarity=0.410 Sum_probs=23.8
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 173 (197)
...|+-|-..+.. ..+ .. -+..||.+| .+|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~-~~v--~a-~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITG-RVL--EA-GEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSS-CCB--CC-SSCCBCTTT--------SCCSSSCCCCC
T ss_pred cCCcccCCCEecC-eeE--Ee-CCCCCCCCc--------CEeCCCCCCCC
Confidence 3578888777654 222 22 567888777 35677766664
No 233
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=24.46 E-value=1.1e+02 Score=19.14 Aligned_cols=25 Identities=24% Similarity=0.575 Sum_probs=10.6
Q ss_pred cchhH--HHHHHHHHHHHHHHHHHHHh
Q 029203 15 IGLGY--SIAIALGFLVLLSTVLLASY 39 (197)
Q Consensus 15 ~~~~~--~I~i~i~~~vli~~i~l~~~ 39 (197)
-||+. ++++..+++.++.++++-+|
T Consensus 22 PGWGTtplMgv~m~Lf~vFl~iiLeIY 48 (65)
T 3arc_H 22 PGWGTTPLMAVFMGLFLVFLLIILEIY 48 (65)
T ss_dssp STTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccChhHHHHHHHHHHHHHHHHHHHh
Confidence 34444 44444444444444444444
No 234
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.87 E-value=59 Score=20.18 Aligned_cols=39 Identities=15% Similarity=0.320 Sum_probs=27.5
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLP 174 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 174 (197)
...|+-|-+.+... .+. . -+..||.+|+ +|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~-~v~--a-~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 2cuq_A 15 APRCARCSKTLTQG-GVT--Y-RDQPWHRECL--------VCTGCQTPLAG 53 (80)
T ss_dssp SCCCTTTCCCCCSC-CEE--S-SSSEECTTTC--------BCSSSCCBCTT
T ss_pred CCcCCCCCCEecCc-EEE--E-CCchhhhhhC--------CcccCCCcCCC
Confidence 46899998887653 332 3 6788998873 68888877743
No 235
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.65 E-value=62 Score=22.19 Aligned_cols=52 Identities=10% Similarity=-0.042 Sum_probs=35.7
Q ss_pred CCccccccccccC-CcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCCCC
Q 029203 124 NTTCSICLCEYKD-LEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPTPL 177 (197)
Q Consensus 124 ~~~CaICL~~~~~-~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~~ 177 (197)
-+.|+.|-..+.+ +... ... =+.+|+..|..+-+..+..|-.|...|.+..+
T Consensus 32 CF~C~~C~~~L~~~~~~~-~~~-~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSS-YTK-SGMILCRNDYIRLFGNSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHCCSSSCCCTTTSEECC-EEE-TTEEECHHHHHHHHCCCCSSSCSSCCSCCEES
T ss_pred CCCcCCCCCcccccCCeE-EEE-CCeeecHHHHHHHcCCCCccccCCCCcCchhe
Confidence 4688888877763 2222 222 57889999988866655589999888876443
No 236
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=29.12 E-value=17 Score=20.97 Aligned_cols=19 Identities=16% Similarity=0.408 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 029203 21 IAIALGFLVLLSTVLLASY 39 (197)
Q Consensus 21 I~i~i~~~vli~~i~l~~~ 39 (197)
|+++++-+.+..++++.++
T Consensus 20 iGL~v~gVai~~vIVvsl~ 38 (43)
T 2llm_A 20 IGLMVGGVVIATVIVITLV 38 (43)
Confidence 3333333333343433333
No 237
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.30 E-value=60 Score=20.31 Aligned_cols=41 Identities=24% Similarity=0.466 Sum_probs=28.7
Q ss_pred CCCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 123 INTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 123 ~~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
....|+-|-..+.. ..+. . -+..||.+| .+|-.|+..|...
T Consensus 14 ~~~~C~~C~~~I~~-~~~~--a-~~~~~H~~C--------F~C~~C~~~L~~~ 54 (81)
T 2dlo_A 14 TLEKCATCSQPILD-RILR--A-MGKAYHPGC--------FTCVVCHRGLDGI 54 (81)
T ss_dssp SCCBCTTTCCBCCS-CCEE--E-TTEEECTTT--------CBCSSSCCBCTTS
T ss_pred CCCccccCCCeecc-eeEE--E-CCccccHHh--------cCcccCCCccCCC
Confidence 35689999888873 3332 2 578899887 3688898877544
No 238
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=22.87 E-value=54 Score=22.58 Aligned_cols=11 Identities=27% Similarity=0.996 Sum_probs=5.2
Q ss_pred Ccccccccccc
Q 029203 125 TTCSICLCEYK 135 (197)
Q Consensus 125 ~~CaICL~~~~ 135 (197)
+.|+.|-..+.
T Consensus 30 F~C~~C~~~L~ 40 (131)
T 2xjy_A 30 LSCDLCGCRLG 40 (131)
T ss_dssp CBCTTTCCBCS
T ss_pred cccCcCCCccc
Confidence 44555544443
No 239
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=22.71 E-value=85 Score=17.02 Aligned_cols=6 Identities=0% Similarity=-0.236 Sum_probs=1.9
Q ss_pred HHhhee
Q 029203 37 ASYICC 42 (197)
Q Consensus 37 ~~~~~~ 42 (197)
.+||.+
T Consensus 24 LI~f~~ 29 (35)
T 2lk9_A 24 LIIFTI 29 (35)
T ss_dssp HHHHC-
T ss_pred heEEee
Confidence 334433
No 240
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.54 E-value=74 Score=21.50 Aligned_cols=36 Identities=11% Similarity=0.029 Sum_probs=19.0
Q ss_pred CCCccccccccccC-CcceeecCCCCCccchhhHHHHhh
Q 029203 123 INTTCSICLCEYKD-LEMLRMMPECRHYFHLCCVDAWLK 160 (197)
Q Consensus 123 ~~~~CaICL~~~~~-~~~vr~l~~C~H~FH~~CI~~Wl~ 160 (197)
.-+.|+.|-..+.+ +.... .. =+.+|+..|-.+-+.
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~-~~-~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLY-YK-LGRKLCRRDYLRLGG 65 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCC-CB-TTBCCCHHHHHHHHT
T ss_pred hcCcccccCCchhcCCCeeE-EE-CCeeechHHHHHHhC
Confidence 34667777666653 22221 11 456677777655443
No 241
>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} SCOP: h.1.4.1
Probab=21.78 E-value=67 Score=18.75 Aligned_cols=21 Identities=38% Similarity=0.388 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhheecc
Q 029203 24 ALGFLVLLSTVLLASYICCRR 44 (197)
Q Consensus 24 ~i~~~vli~~i~l~~~~~~~~ 44 (197)
.+|..++..++.+.+|-++||
T Consensus 24 ~IG~aVLgV~v~i~v~k~IRr 44 (46)
T 2ifo_A 24 AIGGAVLTVMVGIKVYKWVRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444444455556655544
No 242
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.76 E-value=83 Score=19.47 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=28.4
Q ss_pred CCccccccccccCCcceeecCCCCCccchhhHHHHhhCCCCCcccCCCCCCC
Q 029203 124 NTTCSICLCEYKDLEMLRMMPECRHYFHLCCVDAWLKLNGSCPVCRNSPLPT 175 (197)
Q Consensus 124 ~~~CaICL~~~~~~~~vr~l~~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 175 (197)
...|+-|-..+.. +.+.. -+..||.+| .+|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~-~~v~a---~~~~~H~~C--------F~C~~C~~~L~~~ 54 (80)
T 1x3h_A 15 SPKCGGCNRPVLE-NYLSA---MDTVWHPEC--------FVCGDCFTSFSTG 54 (80)
T ss_dssp SCBCTTTCCBCCS-SCEEE---TTEEECTTT--------CBCSSSCCBSCSS
T ss_pred CCccccCCCeecc-eeEEE---CCCeEecCc--------CChhhCCCCCCCC
Confidence 4689999888875 33332 567888887 3688888877553
No 243
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=21.75 E-value=1.1e+02 Score=16.88 Aligned_cols=16 Identities=31% Similarity=0.285 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 029203 19 YSIAIALGFLVLLSTV 34 (197)
Q Consensus 19 ~~I~i~i~~~vli~~i 34 (197)
+.+++.+|++.++.++
T Consensus 8 ~~lan~lG~~~~~LIV 23 (37)
T 2lat_A 8 AIFANMLGVSLFLLVV 23 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455556655544433
No 244
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=21.32 E-value=5 Score=19.99 Aligned_cols=12 Identities=33% Similarity=0.980 Sum_probs=8.8
Q ss_pred ccchhhHHHHhh
Q 029203 149 YFHLCCVDAWLK 160 (197)
Q Consensus 149 ~FH~~CI~~Wl~ 160 (197)
.||..|-.+||.
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 577788888773
No 245
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=21.28 E-value=15 Score=25.16 Aligned_cols=18 Identities=22% Similarity=-0.016 Sum_probs=13.3
Q ss_pred HHHhhCCCCCcccCCCCC
Q 029203 156 DAWLKLNGSCPVCRNSPL 173 (197)
Q Consensus 156 ~~Wl~~~~tCPlCR~~l~ 173 (197)
+.||..--.||+|+.+|.
T Consensus 2 d~~LLdILaCP~cK~pL~ 19 (97)
T 2k5r_A 2 DRKLLHLLCSPDTRQPLS 19 (97)
T ss_dssp CTTTCSSCCCCTTSSCCE
T ss_pred ChHHhhheECCCCCCccc
Confidence 346666668999999774
No 246
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.13 E-value=47 Score=21.58 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=23.0
Q ss_pred CCCCCccccccccccC-CcceeecCCCCCccchhhH
Q 029203 121 NNINTTCSICLCEYKD-LEMLRMMPECRHYFHLCCV 155 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~-~~~vr~l~~C~H~FH~~CI 155 (197)
.+....|+.|.+.|-- .+.-..-+.|.|..+.+|=
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 4567899999998752 1222334458888777773
No 247
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=20.10 E-value=51 Score=23.78 Aligned_cols=30 Identities=30% Similarity=0.593 Sum_probs=19.5
Q ss_pred CCCCCccccccccccCCc-ceeecCCCCCcc
Q 029203 121 NNINTTCSICLCEYKDLE-MLRMMPECRHYF 150 (197)
Q Consensus 121 ~~~~~~CaICL~~~~~~~-~vr~l~~C~H~F 150 (197)
......|+-|-.+|.=.| ...+.|.|+|-+
T Consensus 24 M~~lP~CP~C~seytYeDg~l~vCPeC~hEW 54 (138)
T 2akl_A 24 VSTLPPCPQCNSEYTYEDGALLVCPECAHEW 54 (138)
T ss_dssp CCCSCCCTTTCCCCCEECSSSEEETTTTEEE
T ss_pred cccCCCCCCCCCcceEecCCeEECCcccccc
Confidence 344578999999986322 344556577765
Done!