BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029204
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P5Q|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|B Chain B, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|C Chain C, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|D Chain D, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5R|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Oxidized Form
pdb|2P5R|B Chain B, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Oxidized Form
Length = 170
Score = 153 bits (386), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 69/102 (67%), Positives = 84/102 (82%)
Query: 81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ 140
T+ +S++DFTVKD DV LS FKGKVLLIVNVAS+CG+T SNY+E++ LYEKYK Q
Sbjct: 5 TSKNPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQ 64
Query: 141 GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVS 182
G EILAFPCNQFG +EPG+N +I +F CTRFK+EFPIFDK+
Sbjct: 65 GLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKID 106
>pdb|2VUP|A Chain A, Crystal Structure Of A Type Ii Tryparedoxin-Dependant
Peroxidase From Trypanosoma Brucei
Length = 190
Score = 126 bits (317), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 75/106 (70%), Gaps = 2/106 (1%)
Query: 77 GVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEK 136
G H +AA+ S++DF V D D K L + KG LLI NVAS+CG T Y + LY K
Sbjct: 19 GSHMSAAS--SIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNK 76
Query: 137 YKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVS 182
YK+QGF +LAFPCNQFGGQEPG+ EIKEF CT+FKAEFPI K++
Sbjct: 77 YKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKIN 122
>pdb|3E0U|A Chain A, Crystal Structure Of T. Cruzi Gpx1
Length = 166
Score = 126 bits (316), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 69/97 (71%)
Query: 86 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEIL 145
KS+Y+F V DGK LS+ KG LLI NVASRCG T Y + LY KYK QGF +L
Sbjct: 3 KSIYEFQVNAADGKPYDLSQHKGHPLLIYNVASRCGYTKGGYETATTLYNKYKGQGFTVL 62
Query: 146 AFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVS 182
AFPCNQF GQEPG+ E+KEFACTRFKA+FPI K+
Sbjct: 63 AFPCNQFAGQEPGTALEVKEFACTRFKADFPIMAKID 99
>pdb|3DWV|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
pdb|3DWV|B Chain B, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
Length = 187
Score = 120 bits (300), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 57/96 (59%), Positives = 68/96 (70%)
Query: 87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
S++DF V D D K L + KG LLI NVAS+CG T Y + LY KYK+QGF +LA
Sbjct: 25 SIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLA 84
Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVS 182
FP NQFGGQEPG+ EIKEF CT+FKAEFPI K++
Sbjct: 85 FPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKIN 120
>pdb|2RM5|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
pdb|2RM6|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Reduced Form
Length = 167
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/96 (59%), Positives = 68/96 (70%)
Query: 87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
S++DF V D D K L + KG LLI NVAS+CG T Y + LY KYK+QGF +LA
Sbjct: 5 SIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLA 64
Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVS 182
FP NQFGGQEPG+ EIKEF CT+FKAEFPI K++
Sbjct: 65 FPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKIN 100
>pdb|2WGR|A Chain A, Combining Crystallography And Molecular Dynamics: The Case
Of Schistosoma Mansoni Phospholipid Glutathione
Peroxidase
Length = 169
Score = 109 bits (273), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 66/95 (69%)
Query: 87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
S+Y+FTVKDI+G DV L K++G V LIVNVA + G T NY +L ++ + +G ILA
Sbjct: 10 SIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKSGATDKNYRQLQEMHTRLVGKGLRILA 69
Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV 181
FPCNQFGGQEP + EIK+F ++ +F +F K+
Sbjct: 70 FPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKI 104
>pdb|2V1M|A Chain A, Crystal Structure Of Schistosoma Mansoni Glutathione
Peroxidase
Length = 169
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 66/95 (69%)
Query: 87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
S+Y+FTVKDI+G DV L K++G V LIVNVA + G T NY +L ++ + +G ILA
Sbjct: 10 SIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKXGATDKNYRQLQEMHTRLVGKGLRILA 69
Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV 181
FPCNQFGGQEP + EIK+F ++ +F +F K+
Sbjct: 70 FPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKI 104
>pdb|2OBI|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant
Of Human Phospholipid Hydroperoxide Glutathione
Peroxidase (Gpx4)
Length = 183
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 68/96 (70%), Gaps = 1/96 (1%)
Query: 86 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEIL 145
+S+++F+ KDIDG V L K++G V ++ NVAS+CG T NY++L L+ +Y G IL
Sbjct: 25 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRIL 84
Query: 146 AFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV 181
AFPCNQFG QEPGSN EIKEFA + +F +F K+
Sbjct: 85 AFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKI 119
>pdb|2GS3|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 4(Gpx4)
Length = 185
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 86 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEIL 145
+S+++F+ KDIDG V L K++G V ++ NVAS+ G T NY++L L+ +Y G IL
Sbjct: 27 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRIL 86
Query: 146 AFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV 181
AFPCNQFG QEPGSN EIKEFA + +F +F K+
Sbjct: 87 AFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKI 121
>pdb|2P31|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 7
pdb|2P31|B Chain B, Crystal Structure Of Human Glutathione Peroxidase 7
Length = 181
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 60/100 (60%)
Query: 85 EKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEI 144
E+ YDF +I GK V L K++G V L+VNVAS CG T +Y L L F +
Sbjct: 26 EQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNV 85
Query: 145 LAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVSQT 184
LAFPCNQFG QEP SN EI+ FA + FP+F K++ T
Sbjct: 86 LAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVT 125
>pdb|3CMI|A Chain A, Crystal Structure Of Glutathione-Dependent Phospholipid
Peroxidase Hyr1 From The Yeast Saccharomyces Cerevisiae
Length = 171
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Query: 87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
Y D G+ P + KGKV+LIVNVAS+CG TP Y EL LY++YK +GF I+
Sbjct: 11 EFYKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIG 69
Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVS 182
FPCNQFG QEPGS+ EI +F + FPI K+
Sbjct: 70 FPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKID 105
>pdb|3CYN|A Chain A, The Structure Of Human Gpx8
pdb|3CYN|B Chain B, The Structure Of Human Gpx8
pdb|3CYN|C Chain C, The Structure Of Human Gpx8
Length = 189
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 60/95 (63%)
Query: 87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
S Y F VKD G+ V L K+KGKV L+VNVAS C LT NY L L++++ F +LA
Sbjct: 26 SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLA 85
Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV 181
FPCNQFG EP + E++ FA + FPIF K+
Sbjct: 86 FPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKI 120
>pdb|3KIJ|A Chain A, Crystal Structure Of The Human Pdi-Peroxidase
pdb|3KIJ|B Chain B, Crystal Structure Of The Human Pdi-Peroxidase
pdb|3KIJ|C Chain C, Crystal Structure Of The Human Pdi-Peroxidase
Length = 180
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 60/95 (63%)
Query: 87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
S Y F VKD G+ V L K+KGKV L+VNVAS C LT NY L L++++ F +LA
Sbjct: 17 SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLA 76
Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV 181
FPCNQFG EP + E++ FA + FPIF K+
Sbjct: 77 FPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKI 111
>pdb|2R37|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
pdb|2R37|B Chain B, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
Length = 207
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 87 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEIL 145
++Y++ IDG++ +P ++ GK +L VNVAS GLT Y EL+ L E+ G IL
Sbjct: 16 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVIL 74
Query: 146 AFPCNQFGGQEPGSNPEI 163
FPCNQFG QEPG N EI
Sbjct: 75 GFPCNQFGKQEPGENSEI 92
>pdb|2I3Y|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 5
Length = 215
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 87 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEIL 145
++YD+ ++ + V ++ GK +L VNVA+ CGLT + Y EL+ L E+ K G +L
Sbjct: 34 TIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLT-AQYPELNALQEELKPYGLVVL 92
Query: 146 AFPCNQFGGQEPGSNPEI 163
FPCNQFG QEPG N EI
Sbjct: 93 GFPCNQFGKQEPGDNKEI 110
>pdb|2HE3|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant
Of Human Glutathionine Peroxidase 2 (Gpx2)
Length = 208
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 86 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEIL 145
KS YD + ++DG+ V + F+G+ +LI NVAS CG T ++++L+ L ++ + +L
Sbjct: 26 KSFYDLSAINLDGEKVDFNTFRGRAVLIENVASLCGTTTRDFTQLNELQCRFPRR-LVVL 84
Query: 146 AFPCNQFGGQEPGSNPEI 163
FPCNQFG QE N EI
Sbjct: 85 GFPCNQFGHQENCQNEEI 102
>pdb|2F8A|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 1
pdb|2F8A|B Chain B, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 1
Length = 208
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 86 KSLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEI 144
+S+Y F+ + + G + V L +GKVLLI NVAS G T +Y++++ L + +G +
Sbjct: 24 QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVV 83
Query: 145 LAFPCNQFGGQEPGSNPEI 163
L FPCNQFG QE N EI
Sbjct: 84 LGFPCNQFGHQENAKNEEI 102
>pdb|1GP1|A Chain A, The Refined Structure Of The Selenoenzyme Glutathione
Peroxidase At 0.2-Nm Resolution
pdb|1GP1|B Chain B, The Refined Structure Of The Selenoenzyme Glutathione
Peroxidase At 0.2-Nm Resolution
Length = 198
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 10/103 (9%)
Query: 86 KSLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEI 144
+++Y F+ + + G + LS +GKVLLI NVAS G T +Y++++ L + +G +
Sbjct: 10 RTVYAFSARPLAGGEPFNLSSLRGKVLLIENVASLXGTTVRDYTQMNDLQRRLGPRGLVV 69
Query: 145 LAFPCNQFGGQEPGSNPEIKEFACTR-------FKAEFPIFDK 180
L FPCNQFG QE N EI C + F+ F +F+K
Sbjct: 70 LGFPCNQFGHQENAKNEEI--LNCLKYVRPGGGFEPNFMLFEK 110
>pdb|2LRT|A Chain A, Solution Structure Of The Uncharacterized Thioredoxin-Like
Protein Bvu_1432 From Bacteroides Vulgatus
Length = 152
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 85 EKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEI 144
E S+ D +KD+ G L+ KGKV+LI ++ ++ L LY KY +QGFEI
Sbjct: 12 EASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEI 71
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 91 FTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150
F+ DI+GK V L+ KGK + I A+ CG L L EKY + ++ C+
Sbjct: 13 FSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCD 72
Query: 151 Q 151
+
Sbjct: 73 K 73
>pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant
pdb|2H19|B Chain B, Crystal Structure Of Resa Cys77ala Variant
Length = 143
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
+F ++D +GK + LS KGK + + + C + +++ Y+ +K+QG EI+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPAKKEFPYMANQYKHFKSQGVEIVA 64
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 88 LYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAF 147
L D +D DGK LS F+GK LL+ A+ C L L K FE++A
Sbjct: 40 LPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAI 99
Query: 148 PCNQFGGQEPGSNPEIKEFACTRF 171
+ ++P + +KE TR
Sbjct: 100 NIDTRDPEKPKTF--LKEANLTRL 121
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
+F ++D +GK + LS KGK + + + C + +++ Y+ +K+QG EI+A
Sbjct: 5 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQGVEIVA 61
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
+F ++D +GK + LS KGK + + + C + +++ Y+ +K+QG EI+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQGVEIVA 64
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
+F ++D +GK + LS KGK + + + C + +++ Y+ +K+QG EI+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKQFPYMANQYKHFKSQGVEIVA 64
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
+F ++D +GK + LS KGK + + + C + +++ Y+ +K+QG EI+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVA 64
>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|2F9S|B Chain B, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
Length = 151
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
+F ++D +GK + LS KGK + + + C + ++ Y+ +K+QG EI+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYXANQYKHFKSQGVEIVA 64
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGL 122
DFT+ DGK V LS +GKV+++ AS CG+
Sbjct: 15 DFTITLTDGKQVTLSSLRGKVVMLQFTASWCGV 47
>pdb|2H1G|A Chain A, Resa C74aC77A
pdb|2H1G|B Chain B, Resa C74aC77A
Length = 143
Score = 33.5 bits (75), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%)
Query: 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149
+F ++D +GK + LS KGK + + + + +++ Y+ +K+QG EI+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWAEPAKKEFPYMANQYKHFKSQGVEIVAVNV 67
Query: 150 NQ 151
+
Sbjct: 68 GE 69
>pdb|2H1A|A Chain A, Resa C74a Variant
pdb|2H1A|B Chain B, Resa C74a Variant
Length = 143
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
+F ++D +GK + LS KGK + + + + +++ Y+ +K+QG EI+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWAEPCKKEFPYMANQYKHFKSQGVEIVA 64
>pdb|1ON4|A Chain A, Solution Structure Of Soluble Domain Of Sco1 From Bacillus
Subtilis
Length = 174
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 24/107 (22%)
Query: 91 FTVKDIDGKDVPLSKFKGKVLLIVNVASRC-GLTPSNYSELSHLYEKYKTQGFE--ILAF 147
FT ++ DGK+V L KG+V L + + C + P + ++ L +K K + + I++F
Sbjct: 16 FTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISF 75
Query: 148 PCN----------QFGGQEP-----------GSNPEIKEFACTRFKA 173
+ +F P S EI+EFA FKA
Sbjct: 76 SVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKA 122
>pdb|1XZO|A Chain A, Identification Of A Disulfide Switch In Bssco, A Member Of
The Sco Family Of Cytochrome C Oxidase Assembly Proteins
pdb|1XZO|B Chain B, Identification Of A Disulfide Switch In Bssco, A Member Of
The Sco Family Of Cytochrome C Oxidase Assembly Proteins
Length = 174
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 24/107 (22%)
Query: 91 FTVKDIDGKDVPLSKFKGKVLLIVNVASRC-GLTPSNYSELSHLYEKYKTQGFE--ILAF 147
FT ++ DGK+V L KG+V L + + C + P + ++ L +K K + + I++F
Sbjct: 16 FTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISF 75
Query: 148 PCN----------QFGGQEP-----------GSNPEIKEFACTRFKA 173
+ +F P S EI+EFA FKA
Sbjct: 76 SVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKA 122
>pdb|4E4F|A Chain A, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
pdb|4E4F|B Chain B, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
pdb|4E4F|C Chain C, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
pdb|4E4F|D Chain D, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
Length = 426
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 68 GFFVKRRSFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNY 127
G + +R + A +A + +L+D K ++PL + G V C T +
Sbjct: 95 GAYWRRGPVTMSAISAVDMALWDIKAK---AANMPLYQLLGGASR-TGVMVYCHTTGHSI 150
Query: 128 SELSHLYEKYKTQGFEILAFPC 149
E+ Y K++ QGF+ + C
Sbjct: 151 DEVLDDYAKHRDQGFKAIRVQC 172
>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 254
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 96 IDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYK 138
+ GKD P + +VLL+VN A CG T N + +H ++K K
Sbjct: 2 VGGKDCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIK 47
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 101 VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
V LS G V+ + AS CG ++ + KYK +GF+++A
Sbjct: 21 VKLSDKTGSVVYLDFWASWCGPCRQSFPWXNQXQAKYKAKGFQVVA 66
>pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|B Chain B, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|C Chain C, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|D Chain D, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|E Chain E, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|F Chain F, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 154
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRC 120
DFT+ ++G+ V LS KG+V+++ A+ C
Sbjct: 10 DFTLNTLNGEVVKLSDLKGQVVIVNFWATWC 40
>pdb|2L5O|A Chain A, Solution Structure Of A Putative Thioredoxin From
Neisseria Meningitidis
Length = 153
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 91 FTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
F++ D+ GK V + +GKV LI C S ++ YK + F++LA
Sbjct: 11 FSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLA 66
>pdb|2LRN|A Chain A, Solution Structure Of A Thiol:disulfide Interchange
Protein From Bacteroides Sp.
pdb|4GRF|A Chain A, Crystal Structure Of Thioredoxin Domain Of Thiol-Disulfide
Oxidoreductase Bvu-2223 (Target Efi-501010) From
Bacteroides Vulgatus
Length = 152
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 95 DIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQ 151
D+ G V L+ FKGK +L+ + C L Y +K +GF I ++
Sbjct: 16 DLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDR 72
>pdb|4EVM|A Chain A, 1.5 Angstrom Crystal Structure Of Soluble Domain Of
Membrane-Anchored Thioredoxin Family Protein From
Streptococcus Pneumoniae Strain Canada Mdr_19a
Length = 138
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGL 122
DF + +DGK LS +KGK + + AS C +
Sbjct: 4 DFELMGVDGKTYRLSDYKGKKVYLKFWASWCSI 36
>pdb|2CVB|A Chain A, Crystal Structure Of A Thioredoxin-Like Protein From
Thermus Thermophilus Hb8
pdb|2YWO|A Chain A, Crystal Structure Of Reduced Thioredoxin-Like Protein From
Thermus Thermophilus Hb8
Length = 188
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 85 EKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYK 138
E L D + D G LS+F +L +V + C + EL L E+Y+
Sbjct: 10 ESPLIDAELPDPRGGRYRLSQFHEPLLAVVFXCNHCPYVKGSIGELVALAERYR 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,483,151
Number of Sequences: 62578
Number of extensions: 206047
Number of successful extensions: 412
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 44
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)