Query 029204
Match_columns 197
No_of_seqs 223 out of 1564
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 09:10:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02399 phospholipid hydroper 100.0 1.3E-36 2.7E-41 250.5 16.7 184 5-196 3-212 (236)
2 PTZ00056 glutathione peroxidas 99.9 8.4E-27 1.8E-31 188.1 12.8 100 81-181 12-111 (199)
3 cd00340 GSH_Peroxidase Glutath 99.9 7.4E-26 1.6E-30 174.9 12.7 108 88-196 2-134 (152)
4 PLN02412 probable glutathione 99.9 8.5E-26 1.8E-30 177.5 12.7 113 84-196 5-142 (167)
5 TIGR02540 gpx7 putative glutat 99.9 1.2E-24 2.7E-29 168.1 12.4 109 88-196 2-131 (153)
6 PTZ00256 glutathione peroxidas 99.9 9.8E-25 2.1E-29 173.8 12.0 97 84-180 16-113 (183)
7 PRK10606 btuE putative glutath 99.9 1.3E-24 2.9E-29 173.1 11.1 101 86-187 3-103 (183)
8 COG0386 BtuE Glutathione perox 99.9 3.2E-23 7E-28 157.8 9.6 100 87-187 4-103 (162)
9 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 2.3E-22 4.9E-27 148.8 11.8 104 84-196 1-120 (124)
10 PF08534 Redoxin: Redoxin; In 99.9 6.4E-22 1.4E-26 151.0 11.9 105 83-196 1-126 (146)
11 KOG1651 Glutathione peroxidase 99.9 5.5E-22 1.2E-26 152.7 9.3 106 81-186 7-112 (171)
12 COG1225 Bcp Peroxiredoxin [Pos 99.9 2.9E-21 6.2E-26 149.4 9.8 95 82-185 4-99 (157)
13 cd03018 PRX_AhpE_like Peroxire 99.9 5.9E-21 1.3E-25 145.9 11.3 105 83-196 2-125 (149)
14 cd02969 PRX_like1 Peroxiredoxi 99.9 3.6E-21 7.8E-26 151.1 10.1 111 85-196 1-121 (171)
15 PF00255 GSHPx: Glutathione pe 99.9 6.3E-21 1.4E-25 139.4 10.6 100 88-188 1-100 (108)
16 PRK09437 bcp thioredoxin-depen 99.8 9E-21 2E-25 146.2 11.6 92 82-182 4-96 (154)
17 cd03017 PRX_BCP Peroxiredoxin 99.8 9.2E-21 2E-25 143.2 10.6 102 86-196 1-121 (140)
18 cd03014 PRX_Atyp2cys Peroxired 99.8 2.6E-20 5.7E-25 141.7 11.6 102 84-196 2-121 (143)
19 cd03012 TlpA_like_DipZ_like Tl 99.8 9.9E-21 2.1E-25 141.6 8.2 96 98-196 13-117 (126)
20 PRK00522 tpx lipid hydroperoxi 99.8 5.3E-20 1.2E-24 144.5 12.3 104 82-196 18-142 (167)
21 cd02967 mauD Methylamine utili 99.8 4.7E-20 1E-24 134.8 11.0 98 89-196 1-107 (114)
22 cd02968 SCO SCO (an acronym fo 99.8 9.1E-20 2E-24 138.1 11.6 90 87-181 1-94 (142)
23 PRK03147 thiol-disulfide oxido 99.8 5.5E-20 1.2E-24 143.8 10.5 109 80-196 33-150 (173)
24 cd03010 TlpA_like_DsbE TlpA-li 99.8 4.7E-20 1E-24 137.7 9.7 99 87-196 2-112 (127)
25 PRK15412 thiol:disulfide inter 99.8 4.2E-20 9.2E-25 147.3 9.6 103 82-196 39-154 (185)
26 TIGR03137 AhpC peroxiredoxin. 99.8 4.6E-20 9.9E-25 147.4 9.3 106 83-196 3-130 (187)
27 cd03015 PRX_Typ2cys Peroxiredo 99.8 9.9E-20 2.1E-24 143.4 10.2 104 84-196 1-131 (173)
28 cd02971 PRX_family Peroxiredox 99.8 1.8E-19 3.9E-24 136.0 11.1 101 87-196 1-121 (140)
29 TIGR02661 MauD methylamine deh 99.8 4.2E-19 9.1E-24 142.1 11.2 103 82-196 46-158 (189)
30 PRK13190 putative peroxiredoxi 99.8 4.3E-19 9.2E-24 143.5 9.4 105 83-196 3-128 (202)
31 PRK13599 putative peroxiredoxi 99.8 5E-19 1.1E-23 144.4 9.7 109 83-196 3-130 (215)
32 PRK10382 alkyl hydroperoxide r 99.8 7.5E-19 1.6E-23 140.5 9.8 106 83-196 3-130 (187)
33 TIGR00385 dsbE periplasmic pro 99.8 5.7E-19 1.2E-23 139.2 9.0 104 81-196 33-149 (173)
34 cd03008 TryX_like_RdCVF Trypar 99.8 8.3E-19 1.8E-23 135.0 9.4 89 100-196 17-124 (146)
35 cd03016 PRX_1cys Peroxiredoxin 99.8 9.2E-19 2E-23 141.6 9.3 104 84-196 1-128 (203)
36 PRK13191 putative peroxiredoxi 99.8 1E-18 2.2E-23 142.7 9.3 110 82-196 7-135 (215)
37 cd02970 PRX_like2 Peroxiredoxi 99.8 1E-18 2.2E-23 132.9 7.5 89 87-184 1-91 (149)
38 PTZ00137 2-Cys peroxiredoxin; 99.8 2.8E-18 6E-23 143.4 9.7 107 82-196 68-199 (261)
39 PLN02919 haloacid dehalogenase 99.8 2.4E-18 5.1E-23 167.5 9.3 113 81-196 390-514 (1057)
40 cd02966 TlpA_like_family TlpA- 99.7 8.8E-18 1.9E-22 120.5 9.7 100 90-196 1-109 (116)
41 PRK15000 peroxidase; Provision 99.7 8.6E-18 1.9E-22 135.7 10.2 106 83-196 3-136 (200)
42 PRK14018 trifunctional thiored 99.7 8.2E-18 1.8E-22 152.1 10.3 110 82-196 32-151 (521)
43 cd02964 TryX_like_family Trypa 99.7 1.3E-17 2.9E-22 125.6 9.7 89 99-196 8-111 (132)
44 PTZ00253 tryparedoxin peroxida 99.7 1.1E-17 2.4E-22 134.8 8.9 107 82-196 6-138 (199)
45 PRK13189 peroxiredoxin; Provis 99.7 1.5E-17 3.2E-22 136.4 9.7 105 83-196 10-137 (222)
46 cd03009 TryX_like_TryX_NRX Try 99.7 1.2E-17 2.7E-22 125.3 8.3 96 93-196 3-111 (131)
47 cd03011 TlpA_like_ScsD_MtbDsbE 99.7 1.5E-17 3.3E-22 123.0 8.4 95 89-195 1-104 (123)
48 cd03013 PRX5_like Peroxiredoxi 99.7 5.4E-17 1.2E-21 126.1 8.0 96 84-188 1-105 (155)
49 PF13905 Thioredoxin_8: Thiore 99.7 6.9E-16 1.5E-20 109.3 9.6 81 108-196 1-94 (95)
50 TIGR01626 ytfJ_HI0045 conserve 99.6 6.1E-16 1.3E-20 123.1 7.9 106 83-196 24-158 (184)
51 COG0450 AhpC Peroxiredoxin [Po 99.6 4.2E-15 9.2E-20 117.8 8.8 106 83-196 4-135 (194)
52 PRK13728 conjugal transfer pro 99.6 6.6E-15 1.4E-19 116.8 7.8 58 84-150 51-108 (181)
53 PF02630 SCO1-SenC: SCO1/SenC; 99.6 4.1E-14 8.8E-19 111.9 11.8 90 84-178 28-120 (174)
54 KOG0855 Alkyl hydroperoxide re 99.4 4.8E-13 1E-17 103.5 8.3 94 81-183 62-157 (211)
55 cd02985 TRX_CDSP32 TRX family, 99.4 4.6E-13 1E-17 96.9 7.5 62 105-177 12-74 (103)
56 TIGR02738 TrbB type-F conjugat 99.3 5.4E-12 1.2E-16 97.9 8.2 47 98-151 44-90 (153)
57 KOG2501 Thioredoxin, nucleored 99.3 1.4E-11 3.1E-16 94.9 8.7 98 91-196 15-127 (157)
58 cd02950 TxlA TRX-like protein 99.3 6.4E-12 1.4E-16 96.2 6.1 83 93-186 3-88 (142)
59 cd02999 PDI_a_ERp44_like PDIa 99.2 3.6E-11 7.9E-16 86.6 7.1 45 104-150 14-58 (100)
60 COG1999 Uncharacterized protei 99.2 1.1E-10 2.3E-15 94.9 10.6 74 90-167 49-126 (207)
61 KOG0910 Thioredoxin-like prote 99.2 2.9E-11 6.3E-16 92.5 6.2 43 107-150 60-102 (150)
62 cd02948 TRX_NDPK TRX domain, T 99.2 5.9E-11 1.3E-15 85.6 7.5 44 107-150 16-59 (102)
63 cd02954 DIM1 Dim1 family; Dim1 99.2 4.8E-11 1E-15 88.1 7.1 43 107-150 13-55 (114)
64 KOG0854 Alkyl hydroperoxide re 99.2 1.8E-11 3.9E-16 95.6 3.9 112 82-196 6-122 (224)
65 KOG2792 Putative cytochrome C 99.2 3.5E-10 7.5E-15 93.2 11.2 78 89-171 120-201 (280)
66 PHA02278 thioredoxin-like prot 99.1 1.9E-10 4E-15 83.6 7.3 43 107-150 13-55 (103)
67 cd03003 PDI_a_ERdj5_N PDIa fam 99.1 1.5E-10 3.1E-15 83.0 6.7 60 106-178 16-76 (101)
68 cd02963 TRX_DnaJ TRX domain, D 99.1 2.8E-10 6.1E-15 83.3 7.5 46 105-150 21-66 (111)
69 cd03006 PDI_a_EFP1_N PDIa fami 99.1 4.3E-10 9.2E-15 83.0 8.0 43 107-150 28-70 (113)
70 KOG0907 Thioredoxin [Posttrans 99.1 3.2E-10 7E-15 82.7 6.4 59 107-179 20-79 (106)
71 cd02956 ybbN ybbN protein fami 99.1 7.7E-10 1.7E-14 78.2 7.5 43 107-150 11-53 (96)
72 cd02993 PDI_a_APS_reductase PD 99.0 9.1E-10 2E-14 80.2 8.0 44 107-150 20-63 (109)
73 cd02962 TMX2 TMX2 family; comp 99.0 7.5E-10 1.6E-14 85.8 7.8 44 107-150 46-89 (152)
74 cd02953 DsbDgamma DsbD gamma f 99.0 1.1E-09 2.5E-14 78.7 7.7 66 107-181 10-79 (104)
75 KOG0852 Alkyl hydroperoxide re 99.0 1.7E-09 3.6E-14 84.5 7.9 98 84-189 6-113 (196)
76 cd02986 DLP Dim1 family, Dim1- 99.0 2.6E-09 5.6E-14 78.7 8.5 60 107-179 13-73 (114)
77 TIGR02740 TraF-like TraF-like 99.0 8.5E-10 1.8E-14 93.1 6.6 50 99-151 157-206 (271)
78 cd02994 PDI_a_TMX PDIa family, 99.0 1.4E-09 3.1E-14 77.6 6.8 61 106-179 15-76 (101)
79 PLN00410 U5 snRNP protein, DIM 99.0 2.2E-09 4.7E-14 82.2 7.2 43 107-150 22-64 (142)
80 TIGR01295 PedC_BrcD bacterioci 98.9 5.5E-09 1.2E-13 78.0 9.0 80 107-196 22-101 (122)
81 PRK09381 trxA thioredoxin; Pro 98.9 1.5E-09 3.2E-14 78.7 5.7 43 107-150 20-62 (109)
82 cd03004 PDI_a_ERdj5_C PDIa fam 98.9 5.5E-09 1.2E-13 75.0 8.5 62 107-181 18-80 (104)
83 PRK10996 thioredoxin 2; Provis 98.9 1.9E-09 4.2E-14 82.1 5.2 43 107-150 51-93 (139)
84 cd03002 PDI_a_MPD1_like PDI fa 98.9 6.4E-09 1.4E-13 75.0 7.3 62 107-179 17-79 (109)
85 cd03005 PDI_a_ERp46 PDIa famil 98.9 3.5E-09 7.6E-14 75.3 5.3 41 110-150 18-60 (102)
86 cd03000 PDI_a_TMX3 PDIa family 98.9 7.6E-09 1.7E-13 74.5 7.0 44 107-150 14-59 (104)
87 cd02996 PDI_a_ERp44 PDIa famil 98.9 5.1E-09 1.1E-13 75.8 5.9 61 107-179 17-83 (108)
88 cd02952 TRP14_like Human TRX-r 98.8 6.9E-09 1.5E-13 77.3 6.2 45 106-151 19-70 (119)
89 cd02997 PDI_a_PDIR PDIa family 98.8 5E-09 1.1E-13 74.6 5.3 63 107-179 16-80 (104)
90 COG3118 Thioredoxin domain-con 98.8 1.2E-08 2.7E-13 86.0 7.2 43 107-150 42-84 (304)
91 cd02959 ERp19 Endoplasmic reti 98.8 1.1E-08 2.3E-13 75.9 6.0 46 104-150 15-60 (117)
92 cd02984 TRX_PICOT TRX domain, 98.8 2.2E-08 4.7E-13 70.7 7.2 42 108-150 14-55 (97)
93 PTZ00051 thioredoxin; Provisio 98.8 2.9E-08 6.3E-13 70.2 7.7 42 107-150 17-58 (98)
94 cd02949 TRX_NTR TRX domain, no 98.8 2.6E-08 5.6E-13 70.9 7.3 43 107-150 12-54 (97)
95 cd02992 PDI_a_QSOX PDIa family 98.8 2.8E-08 6E-13 73.2 7.7 62 108-179 19-83 (114)
96 cd02957 Phd_like Phosducin (Ph 98.8 2.3E-08 5E-13 73.3 7.1 41 108-150 24-64 (113)
97 TIGR00424 APS_reduc 5'-adenyly 98.8 2.5E-08 5.4E-13 89.7 8.6 44 107-150 370-413 (463)
98 cd02951 SoxW SoxW family; SoxW 98.8 2.5E-08 5.5E-13 74.0 7.1 43 107-150 12-58 (125)
99 cd02995 PDI_a_PDI_a'_C PDIa fa 98.8 2.6E-08 5.6E-13 70.8 6.5 44 107-150 17-61 (104)
100 TIGR01126 pdi_dom protein disu 98.8 2.4E-08 5.2E-13 70.6 6.3 61 107-179 12-74 (102)
101 COG2077 Tpx Peroxiredoxin [Pos 98.7 1.3E-07 2.9E-12 72.3 9.7 89 82-181 18-108 (158)
102 PF00085 Thioredoxin: Thioredo 98.7 4.7E-08 1E-12 69.1 6.9 60 107-179 16-76 (103)
103 cd03001 PDI_a_P5 PDIa family, 98.7 7.2E-08 1.6E-12 68.5 7.8 42 108-150 18-59 (103)
104 cd02989 Phd_like_TxnDC9 Phosdu 98.7 9.1E-08 2E-12 70.4 8.2 42 107-150 21-62 (113)
105 PTZ00443 Thioredoxin domain-co 98.6 8.8E-08 1.9E-12 78.7 6.9 61 108-181 52-113 (224)
106 TIGR01068 thioredoxin thioredo 98.6 1.4E-07 3.1E-12 66.3 7.0 42 108-150 14-55 (101)
107 cd02965 HyaE HyaE family; HyaE 98.6 1.2E-07 2.6E-12 69.7 6.7 43 107-150 26-70 (111)
108 cd02998 PDI_a_ERp38 PDIa famil 98.6 1.1E-07 2.4E-12 67.5 6.4 44 107-150 17-61 (105)
109 PLN02309 5'-adenylylsulfate re 98.6 1.6E-07 3.6E-12 84.4 8.7 65 107-181 364-429 (457)
110 cd02975 PfPDO_like_N Pyrococcu 98.6 2.4E-07 5.3E-12 68.1 7.6 42 107-150 21-62 (113)
111 cd02987 Phd_like_Phd Phosducin 98.5 2.4E-07 5.2E-12 73.4 6.9 41 108-150 83-123 (175)
112 cd03065 PDI_b_Calsequestrin_N 98.5 2.9E-07 6.3E-12 68.6 6.7 42 109-150 28-74 (120)
113 cd02961 PDI_a_family Protein D 98.5 5.9E-07 1.3E-11 62.6 7.9 61 107-179 14-76 (101)
114 PRK00293 dipZ thiol:disulfide 98.5 3.6E-07 7.8E-12 84.6 8.2 69 104-182 470-542 (571)
115 KOG0908 Thioredoxin-like prote 98.5 2E-07 4.2E-12 76.9 5.4 63 102-178 15-78 (288)
116 PF13098 Thioredoxin_2: Thiore 98.4 6E-07 1.3E-11 64.9 6.3 43 107-150 4-49 (112)
117 PF00837 T4_deiodinase: Iodoth 98.4 1.1E-06 2.3E-11 72.4 8.2 117 77-196 68-212 (237)
118 cd02955 SSP411 TRX domain, SSP 98.4 1.8E-06 3.9E-11 64.7 8.8 45 105-150 12-59 (124)
119 cd02982 PDI_b'_family Protein 98.4 9.5E-07 2.1E-11 62.9 6.9 42 108-150 12-53 (103)
120 cd02947 TRX_family TRX family; 98.4 1.5E-06 3.2E-11 59.3 7.6 40 109-150 11-50 (93)
121 COG0526 TrxA Thiol-disulfide i 98.4 6E-07 1.3E-11 62.9 5.7 49 101-150 25-73 (127)
122 PTZ00102 disulphide isomerase; 98.4 3.9E-07 8.4E-12 81.9 5.6 58 93-150 359-418 (477)
123 TIGR01130 ER_PDI_fam protein d 98.3 5.6E-07 1.2E-11 80.0 5.2 60 107-178 17-79 (462)
124 TIGR00411 redox_disulf_1 small 98.3 2.3E-06 5E-11 58.3 6.6 56 111-179 2-58 (82)
125 cd02988 Phd_like_VIAF Phosduci 98.2 2.4E-06 5.2E-11 68.7 6.2 41 108-150 102-142 (192)
126 PTZ00102 disulphide isomerase; 98.2 2.6E-06 5.6E-11 76.5 5.4 61 107-179 48-111 (477)
127 PTZ00062 glutaredoxin; Provisi 98.1 6E-06 1.3E-10 67.0 6.6 38 109-148 18-55 (204)
128 TIGR00412 redox_disulf_2 small 98.1 7.8E-06 1.7E-10 55.8 5.9 36 112-148 2-37 (76)
129 TIGR01130 ER_PDI_fam protein d 98.1 9.4E-06 2E-10 72.1 7.9 44 107-150 363-408 (462)
130 PF13899 Thioredoxin_7: Thiore 98.0 2E-05 4.4E-10 54.3 6.2 44 106-150 15-61 (82)
131 KOG0190 Protein disulfide isom 98.0 1.1E-05 2.4E-10 72.9 5.6 59 109-179 43-104 (493)
132 TIGR02187 GlrX_arch Glutaredox 97.9 3.5E-05 7.7E-10 62.6 7.6 42 107-150 132-173 (215)
133 PHA02125 thioredoxin-like prot 97.9 2.9E-05 6.4E-10 52.6 5.8 50 112-180 2-52 (75)
134 cd01659 TRX_superfamily Thiore 97.9 5.6E-05 1.2E-09 46.8 6.8 38 112-151 1-38 (69)
135 TIGR02187 GlrX_arch Glutaredox 97.9 3.8E-05 8.2E-10 62.5 6.5 43 106-150 17-62 (215)
136 KOG0190 Protein disulfide isom 97.8 2.6E-05 5.5E-10 70.6 5.4 43 107-149 383-426 (493)
137 cd02973 TRX_GRX_like Thioredox 97.8 7.9E-05 1.7E-09 48.9 6.1 38 111-150 2-39 (67)
138 KOG0191 Thioredoxin/protein di 97.8 7.7E-05 1.7E-09 65.8 7.6 64 107-183 46-110 (383)
139 TIGR02196 GlrX_YruB Glutaredox 97.8 0.00019 4.1E-09 47.2 7.5 55 112-181 2-57 (74)
140 COG0678 AHP1 Peroxiredoxin [Po 97.8 8.3E-05 1.8E-09 57.1 6.3 95 83-186 4-111 (165)
141 PF04592 SelP_N: Selenoprotein 97.7 0.00021 4.6E-09 58.7 8.5 100 86-196 8-121 (238)
142 cd03026 AhpF_NTD_C TRX-GRX-lik 97.7 0.00012 2.6E-09 51.5 5.8 62 104-179 8-70 (89)
143 TIGR02180 GRX_euk Glutaredoxin 97.6 0.0002 4.3E-09 48.8 6.4 58 112-179 1-59 (84)
144 PF13728 TraF: F plasmid trans 97.6 0.00025 5.3E-09 58.0 7.7 46 103-151 115-160 (215)
145 TIGR02739 TraF type-F conjugat 97.5 0.00033 7.1E-09 58.7 7.3 45 104-151 146-190 (256)
146 PF05988 DUF899: Bacterial pro 97.4 0.0013 2.8E-08 53.4 9.2 86 88-183 46-139 (211)
147 cd02958 UAS UAS family; UAS is 97.4 0.0011 2.4E-08 48.2 8.2 72 105-187 14-90 (114)
148 cd02960 AGR Anterior Gradient 97.4 0.00031 6.6E-09 53.1 5.0 25 106-130 21-45 (130)
149 COG4232 Thiol:disulfide interc 97.4 0.00024 5.3E-09 65.1 5.1 60 106-173 472-532 (569)
150 cd03007 PDI_a_ERp29_N PDIa fam 97.4 0.00054 1.2E-08 50.7 5.9 64 107-179 17-85 (116)
151 PRK13703 conjugal pilus assemb 97.3 0.00071 1.5E-08 56.4 6.9 45 104-151 139-183 (248)
152 TIGR02200 GlrX_actino Glutared 97.2 0.0019 4.1E-08 43.0 7.0 32 112-150 2-33 (77)
153 KOG0541 Alkyl hydroperoxide re 97.2 0.002 4.4E-08 49.8 7.2 101 79-188 6-119 (171)
154 PF14595 Thioredoxin_9: Thiore 97.1 0.00017 3.6E-09 54.4 1.0 72 105-186 38-109 (129)
155 KOG1731 FAD-dependent sulfhydr 97.1 0.00017 3.8E-09 65.7 1.1 63 109-181 58-123 (606)
156 KOG0912 Thiol-disulfide isomer 97.1 0.001 2.2E-08 56.8 5.5 60 108-179 13-77 (375)
157 PRK11200 grxA glutaredoxin 1; 96.8 0.0062 1.4E-07 41.9 6.9 38 111-150 2-39 (85)
158 smart00594 UAS UAS domain. 96.7 0.0059 1.3E-07 45.2 6.5 69 106-185 25-97 (122)
159 cd02976 NrdH NrdH-redoxin (Nrd 96.7 0.013 2.8E-07 38.1 7.3 56 112-182 2-58 (73)
160 KOG0191 Thioredoxin/protein di 96.7 0.0046 1E-07 54.5 6.4 43 108-150 162-205 (383)
161 cd03419 GRX_GRXh_1_2_like Glut 96.5 0.011 2.4E-07 39.9 6.3 57 112-180 2-59 (82)
162 COG4312 Uncharacterized protei 96.4 0.018 3.9E-07 47.0 7.7 90 90-189 54-151 (247)
163 cd03023 DsbA_Com1_like DsbA fa 96.3 0.0075 1.6E-07 45.2 4.9 40 107-148 4-43 (154)
164 PF13462 Thioredoxin_4: Thiore 96.1 0.02 4.4E-07 43.4 6.3 52 99-150 3-55 (162)
165 PF06110 DUF953: Eukaryotic pr 96.0 0.021 4.5E-07 42.5 5.8 42 107-149 18-66 (119)
166 PF13911 AhpC-TSA_2: AhpC/TSA 95.9 0.019 4E-07 41.8 5.0 49 130-187 2-50 (115)
167 KOG4277 Uncharacterized conser 95.5 0.017 3.6E-07 49.5 4.0 42 109-150 44-85 (468)
168 cd02066 GRX_family Glutaredoxi 95.5 0.086 1.9E-06 33.8 6.7 54 112-180 2-56 (72)
169 KOG3425 Uncharacterized conser 95.5 0.037 8E-07 41.1 5.2 42 107-149 24-73 (128)
170 PF09695 YtfJ_HI0045: Bacteria 95.5 0.3 6.4E-06 38.1 10.4 109 84-196 3-136 (160)
171 PHA03050 glutaredoxin; Provisi 95.4 0.044 9.5E-07 39.9 5.4 59 112-179 15-74 (108)
172 TIGR02183 GRXA Glutaredoxin, G 95.4 0.085 1.8E-06 36.5 6.6 37 112-150 2-38 (86)
173 PF00462 Glutaredoxin: Glutare 95.3 0.095 2.1E-06 33.4 6.2 54 112-180 1-55 (60)
174 COG0695 GrxC Glutaredoxin and 95.3 0.11 2.4E-06 35.6 6.9 58 112-182 3-61 (80)
175 cd03418 GRX_GRXb_1_3_like Glut 95.3 0.16 3.4E-06 33.5 7.5 53 112-179 2-56 (75)
176 PRK10329 glutaredoxin-like pro 95.0 0.17 3.6E-06 34.8 7.2 56 112-182 3-58 (81)
177 TIGR02181 GRX_bact Glutaredoxi 94.7 0.17 3.6E-06 34.0 6.5 53 112-179 1-54 (79)
178 cd03019 DsbA_DsbA DsbA family, 94.7 0.066 1.4E-06 41.3 5.0 42 107-149 14-55 (178)
179 TIGR02190 GlrX-dom Glutaredoxi 94.6 0.17 3.7E-06 34.2 6.3 57 108-180 6-63 (79)
180 cd03027 GRX_DEP Glutaredoxin ( 94.5 0.35 7.6E-06 32.0 7.6 32 112-150 3-34 (73)
181 TIGR02194 GlrX_NrdH Glutaredox 94.4 0.19 4.1E-06 33.3 6.1 54 112-181 1-55 (72)
182 TIGR00365 monothiol glutaredox 94.3 0.27 5.9E-06 34.9 7.1 59 107-180 10-73 (97)
183 TIGR02189 GlrX-like_plant Glut 94.3 0.22 4.8E-06 35.5 6.6 56 112-179 10-66 (99)
184 PF03190 Thioredox_DsbH: Prote 94.1 0.16 3.4E-06 39.8 5.8 28 101-128 30-57 (163)
185 cd03020 DsbA_DsbC_DsbG DsbA fa 93.4 0.44 9.5E-06 37.9 7.5 33 100-132 69-101 (197)
186 KOG4498 Uncharacterized conser 93.3 0.2 4.2E-06 40.1 5.2 80 94-182 35-116 (197)
187 cd03028 GRX_PICOT_like Glutare 93.3 0.43 9.3E-06 33.2 6.5 58 107-179 6-68 (90)
188 PF13778 DUF4174: Domain of un 93.2 0.67 1.5E-05 34.2 7.6 85 103-196 3-90 (118)
189 PRK10877 protein disulfide iso 92.7 0.23 4.9E-06 41.0 5.0 44 101-148 100-143 (232)
190 PRK10638 glutaredoxin 3; Provi 92.6 0.83 1.8E-05 31.0 7.0 54 112-180 4-58 (83)
191 cd02991 UAS_ETEA UAS family, E 92.5 0.38 8.3E-06 35.4 5.5 63 105-181 14-83 (116)
192 PRK10954 periplasmic protein d 92.3 0.28 6.2E-06 39.4 5.0 43 106-149 35-80 (207)
193 KOG1752 Glutaredoxin and relat 92.2 0.8 1.7E-05 33.2 6.8 56 112-179 16-72 (104)
194 KOG0914 Thioredoxin-like prote 92.1 0.17 3.7E-06 41.5 3.4 45 107-151 143-187 (265)
195 cd02972 DsbA_family DsbA famil 91.8 0.68 1.5E-05 31.1 5.9 38 112-150 1-38 (98)
196 cd03029 GRX_hybridPRX5 Glutare 91.6 0.93 2E-05 29.7 6.2 32 112-150 3-34 (72)
197 PRK10824 glutaredoxin-4; Provi 91.1 0.73 1.6E-05 34.0 5.7 57 107-178 13-74 (115)
198 KOG0911 Glutaredoxin-related p 91.0 0.21 4.5E-06 41.0 2.8 42 107-150 16-57 (227)
199 PHA03075 glutaredoxin-like pro 90.3 1.2 2.5E-05 33.0 5.9 68 109-186 2-81 (123)
200 PF13192 Thioredoxin_3: Thiore 89.6 0.73 1.6E-05 30.9 4.3 31 116-147 6-36 (76)
201 PRK11657 dsbG disulfide isomer 89.3 1.4 3E-05 36.8 6.6 40 106-148 115-154 (251)
202 PTZ00062 glutaredoxin; Provisi 88.3 1.6 3.5E-05 35.4 6.1 58 107-179 111-173 (204)
203 TIGR01617 arsC_related transcr 87.9 1.3 2.9E-05 32.2 5.1 51 113-175 2-52 (117)
204 cd03036 ArsC_like Arsenate Red 87.9 1.6 3.4E-05 31.6 5.3 49 113-173 2-50 (111)
205 COG1651 DsbG Protein-disulfide 87.8 1.7 3.8E-05 35.4 6.2 54 94-147 70-123 (244)
206 cd02977 ArsC_family Arsenate R 87.3 1.9 4.1E-05 30.6 5.4 49 112-172 1-49 (105)
207 PF08821 CGGC: CGGC domain; I 86.5 2 4.4E-05 31.2 5.2 74 99-178 26-103 (107)
208 cd03032 ArsC_Spx Arsenate Redu 85.3 3.4 7.3E-05 30.0 5.9 51 112-174 2-52 (115)
209 KOG3414 Component of the U4/U6 85.2 8.9 0.00019 28.9 8.0 58 107-177 22-79 (142)
210 PF11009 DUF2847: Protein of u 85.0 3.3 7.2E-05 30.1 5.6 59 107-174 18-76 (105)
211 TIGR03143 AhpF_homolog putativ 84.2 2.9 6.4E-05 38.7 6.4 41 108-150 476-516 (555)
212 PF05768 DUF836: Glutaredoxin- 83.2 2.8 6.1E-05 28.4 4.5 57 112-183 2-58 (81)
213 PF02114 Phosducin: Phosducin; 82.6 4 8.7E-05 34.4 6.1 41 108-150 146-186 (265)
214 PRK01655 spxA transcriptional 82.5 3.2 7E-05 31.0 4.9 50 112-173 2-51 (131)
215 PRK11509 hydrogenase-1 operon 82.3 7.9 0.00017 29.2 7.0 41 110-150 36-78 (132)
216 TIGR03759 conj_TIGR03759 integ 82.3 4.8 0.0001 32.5 6.0 56 110-178 110-165 (200)
217 cd03035 ArsC_Yffb Arsenate Red 82.1 3.8 8.2E-05 29.4 5.0 49 112-172 1-49 (105)
218 KOG0913 Thiol-disulfide isomer 80.5 0.44 9.5E-06 39.4 -0.5 38 110-147 41-78 (248)
219 COG2179 Predicted hydrolase of 78.0 8.9 0.00019 30.3 6.1 59 109-176 29-88 (175)
220 PRK12559 transcriptional regul 76.9 8.3 0.00018 28.9 5.6 48 112-171 2-49 (131)
221 COG2143 Thioredoxin-related pr 75.6 14 0.00031 28.9 6.6 79 106-189 40-130 (182)
222 PRK15317 alkyl hydroperoxide r 75.5 7.6 0.00016 35.6 6.1 41 107-149 115-155 (517)
223 PRK13344 spxA transcriptional 75.0 9.4 0.0002 28.6 5.5 51 112-174 2-52 (132)
224 PF02966 DIM1: Mitosis protein 72.9 27 0.00059 26.4 7.3 43 107-150 19-61 (133)
225 COG4545 Glutaredoxin-related p 72.9 7.3 0.00016 26.7 3.9 56 113-184 5-60 (85)
226 PF05176 ATP-synt_10: ATP10 pr 72.1 7.6 0.00016 32.5 4.7 69 80-150 93-166 (252)
227 PF06053 DUF929: Domain of unk 70.8 7 0.00015 32.7 4.2 35 106-140 56-90 (249)
228 COG2761 FrnE Predicted dithiol 70.3 14 0.00029 30.6 5.7 64 109-173 4-69 (225)
229 PF01323 DSBA: DSBA-like thior 69.9 8.1 0.00018 29.8 4.3 39 111-149 1-39 (193)
230 PRK12759 bifunctional gluaredo 68.4 19 0.0004 32.3 6.7 32 112-150 4-35 (410)
231 TIGR03140 AhpF alkyl hydropero 67.1 15 0.00033 33.7 6.0 41 107-149 116-156 (515)
232 KOG2961 Predicted hydrolase (H 65.8 43 0.00093 26.3 7.3 84 89-179 23-114 (190)
233 cd03025 DsbA_FrnE_like DsbA fa 64.4 8.8 0.00019 29.7 3.5 33 112-145 3-35 (193)
234 PF13848 Thioredoxin_6: Thiore 63.6 42 0.0009 25.4 7.2 74 108-191 94-168 (184)
235 PF04723 GRDA: Glycine reducta 60.0 11 0.00025 28.6 3.1 40 111-150 31-77 (150)
236 PRK12723 flagellar biosynthesi 58.3 56 0.0012 29.1 7.8 81 109-196 173-265 (388)
237 PF09419 PGP_phosphatase: Mito 57.7 31 0.00068 27.1 5.4 88 85-174 15-108 (168)
238 TIGR03143 AhpF_homolog putativ 57.6 28 0.00061 32.3 6.0 42 105-148 363-404 (555)
239 cd03024 DsbA_FrnE DsbA family, 55.3 60 0.0013 25.1 6.9 32 114-145 3-35 (201)
240 COG3019 Predicted metal-bindin 54.1 69 0.0015 24.6 6.5 33 111-150 27-59 (149)
241 KOG0780 Signal recognition par 53.4 61 0.0013 29.3 7.0 87 103-196 94-194 (483)
242 PF14062 DUF4253: Domain of un 52.3 29 0.00062 25.2 4.2 52 118-172 24-78 (111)
243 cd03031 GRX_GRX_like Glutaredo 52.3 62 0.0013 24.7 6.2 32 112-150 2-39 (147)
244 TIGR01425 SRP54_euk signal rec 50.7 1.1E+02 0.0024 27.7 8.4 83 107-196 97-193 (429)
245 COG1331 Highly conserved prote 50.4 33 0.00071 32.8 5.2 70 106-189 41-123 (667)
246 cd03041 GST_N_2GST_N GST_N fam 50.3 69 0.0015 20.9 6.4 20 113-132 3-22 (77)
247 PRK13265 glycine/sarcosine/bet 49.7 22 0.00048 27.1 3.2 38 111-148 32-76 (154)
248 COG1697 DNA topoisomerase VI, 48.9 1E+02 0.0022 27.2 7.5 110 83-195 139-257 (356)
249 PF12687 DUF3801: Protein of u 48.7 45 0.00098 26.9 5.2 46 130-186 24-69 (204)
250 PF02670 DXP_reductoisom: 1-de 48.7 24 0.00053 26.4 3.4 42 132-182 16-57 (129)
251 cd03051 GST_N_GTT2_like GST_N 48.4 67 0.0014 20.1 5.2 31 114-149 3-33 (74)
252 cd03074 PDI_b'_Calsequestrin_C 46.7 1.2E+02 0.0025 22.4 7.2 57 110-174 22-79 (120)
253 PF13743 Thioredoxin_5: Thiore 46.0 28 0.00061 27.2 3.5 34 114-148 2-35 (176)
254 PF05673 DUF815: Protein of un 44.7 40 0.00088 28.2 4.4 59 111-180 55-113 (249)
255 cd00570 GST_N_family Glutathio 43.7 71 0.0015 19.1 5.6 53 114-181 3-56 (71)
256 PF08235 LNS2: LNS2 (Lipin/Ned 43.3 51 0.0011 25.6 4.5 77 92-182 2-84 (157)
257 PF01106 NifU: NifU-like domai 42.6 96 0.0021 20.3 5.4 50 97-146 15-67 (68)
258 TIGR00014 arsC arsenate reduct 41.1 85 0.0018 22.6 5.2 50 113-174 2-51 (114)
259 PF06953 ArsD: Arsenical resis 40.8 30 0.00064 25.8 2.8 54 124-179 23-77 (123)
260 KOG3170 Conserved phosducin-li 40.3 26 0.00057 28.6 2.5 41 107-149 110-150 (240)
261 KOG2603 Oligosaccharyltransfer 39.8 1.5E+02 0.0033 25.8 7.1 37 104-140 56-96 (331)
262 PRK10178 D-alanyl-D-alanine di 39.4 1.8E+02 0.0038 23.3 7.1 44 104-150 27-70 (184)
263 PRK14324 glmM phosphoglucosami 38.8 1.2E+02 0.0026 27.3 6.9 53 141-196 199-256 (446)
264 PRK12359 flavodoxin FldB; Prov 37.2 1E+02 0.0022 24.1 5.5 23 144-167 139-161 (172)
265 COG5418 Predicted secreted pro 36.9 86 0.0019 24.2 4.7 74 87-168 51-130 (164)
266 COG0541 Ffh Signal recognition 36.8 2.3E+02 0.005 25.9 8.2 83 107-196 97-193 (451)
267 cd03423 SirA SirA (also known 36.2 1.2E+02 0.0026 19.6 6.2 58 123-189 9-66 (69)
268 cd03033 ArsC_15kD Arsenate Red 36.1 1.1E+02 0.0023 22.2 5.1 49 112-172 2-50 (113)
269 PF04134 DUF393: Protein of un 35.8 33 0.00071 24.3 2.3 31 115-148 2-32 (114)
270 cd05802 GlmM GlmM is a bacteri 35.2 2.3E+02 0.0051 25.2 8.2 53 141-196 193-250 (434)
271 PRK10853 putative reductase; P 35.1 87 0.0019 22.8 4.5 51 112-174 2-52 (118)
272 PF00448 SRP54: SRP54-type pro 34.6 41 0.00088 26.8 2.9 64 129-196 17-94 (196)
273 cd03060 GST_N_Omega_like GST_N 34.6 44 0.00095 21.3 2.6 54 114-182 3-56 (71)
274 cd02983 P5_C P5 family, C-term 34.5 1.4E+02 0.003 22.0 5.6 41 110-150 22-66 (130)
275 COG1419 FlhF Flagellar GTP-bin 34.5 2.1E+02 0.0045 25.8 7.5 79 112-196 205-292 (407)
276 PRK10887 glmM phosphoglucosami 34.2 1.5E+02 0.0033 26.5 6.8 53 141-196 195-252 (443)
277 COG1393 ArsC Arsenate reductas 34.2 1.1E+02 0.0025 22.3 5.0 51 112-174 3-53 (117)
278 PF09822 ABC_transp_aux: ABC-t 33.6 2.7E+02 0.0059 22.9 8.3 62 106-175 23-88 (271)
279 cd03073 PDI_b'_ERp72_ERp57 PDI 33.6 1.3E+02 0.0028 21.6 5.2 26 124-150 34-60 (111)
280 PF14307 Glyco_tran_WbsX: Glyc 33.4 97 0.0021 26.9 5.3 43 107-149 157-199 (345)
281 TIGR01485 SPP_plant-cyano sucr 33.3 2.6E+02 0.0056 22.6 7.9 47 124-179 20-68 (249)
282 PRK14315 glmM phosphoglucosami 32.2 1.8E+02 0.0039 26.1 6.9 53 141-196 200-257 (448)
283 TIGR00995 3a0901s06TIC22 chlor 31.6 1.9E+02 0.0042 24.5 6.5 62 83-151 77-143 (270)
284 cd03089 PMM_PGM The phosphoman 31.4 1.2E+02 0.0026 27.2 5.7 53 141-196 187-247 (443)
285 cd03034 ArsC_ArsC Arsenate Red 31.0 1.5E+02 0.0032 21.2 5.1 49 113-173 2-50 (112)
286 COG4285 Uncharacterized conser 30.8 1.1E+02 0.0024 25.4 4.7 61 89-149 29-90 (253)
287 PF15092 UPF0728: Uncharacteri 30.7 1.6E+02 0.0036 20.6 4.9 43 110-152 5-49 (88)
288 PF07976 Phe_hydrox_dim: Pheno 30.6 2.3E+02 0.0049 21.9 6.5 71 80-150 28-116 (169)
289 PF13344 Hydrolase_6: Haloacid 30.3 90 0.0019 21.9 3.8 43 127-175 16-58 (101)
290 PRK09542 manB phosphomannomuta 30.3 1.4E+02 0.0031 26.8 5.9 54 140-196 187-248 (445)
291 PRK14316 glmM phosphoglucosami 30.1 2E+02 0.0043 25.8 6.8 61 130-196 189-254 (448)
292 cd03045 GST_N_Delta_Epsilon GS 30.0 1.5E+02 0.0032 18.7 5.4 31 114-149 3-33 (74)
293 TIGR01752 flav_long flavodoxin 29.9 2.3E+02 0.0049 21.6 6.3 7 106-112 76-82 (167)
294 cd03422 YedF YedF is a bacteri 29.8 1.6E+02 0.0035 19.1 6.1 54 127-189 13-66 (69)
295 PF04278 Tic22: Tic22-like fam 29.7 1.1E+02 0.0024 25.8 4.9 62 83-150 70-136 (274)
296 PF10281 Ish1: Putative stress 29.6 56 0.0012 18.7 2.2 17 159-176 5-21 (38)
297 KOG2878 Predicted kinase [Gene 29.5 1.7E+02 0.0036 24.3 5.5 70 110-186 31-101 (282)
298 PF01206 TusA: Sulfurtransfera 29.5 1.6E+02 0.0034 18.8 5.8 57 113-180 3-59 (70)
299 cd05800 PGM_like2 This PGM-lik 29.4 1.1E+02 0.0024 27.6 5.1 53 141-196 197-256 (461)
300 PRK10026 arsenate reductase; P 29.3 1.8E+02 0.0038 22.1 5.5 50 112-173 4-53 (141)
301 COG0560 SerB Phosphoserine pho 29.3 1.2E+02 0.0025 24.5 4.7 48 124-180 76-123 (212)
302 COG1512 Beta-propeller domains 29.3 1.3E+02 0.0028 25.5 5.2 24 126-149 47-73 (271)
303 PF09547 Spore_IV_A: Stage IV 29.1 1.8E+02 0.0039 26.7 6.2 60 108-178 180-239 (492)
304 PRK04011 peptide chain release 29.0 1E+02 0.0022 27.6 4.8 24 127-150 366-389 (411)
305 PRK14314 glmM phosphoglucosami 28.9 2.1E+02 0.0046 25.7 6.8 53 141-196 201-258 (450)
306 cd03084 phosphohexomutase The 28.9 1.6E+02 0.0034 25.5 5.8 61 130-196 128-196 (355)
307 PF10790 DUF2604: Protein of U 28.7 48 0.001 21.9 1.9 25 81-105 29-53 (76)
308 PRK14321 glmM phosphoglucosami 28.6 1.8E+02 0.0039 26.2 6.3 53 141-196 189-247 (449)
309 PRK14318 glmM phosphoglucosami 28.5 2.2E+02 0.0049 25.5 6.9 53 141-196 199-256 (448)
310 TIGR01689 EcbF-BcbF capsule bi 28.1 1.6E+02 0.0034 21.9 4.9 48 128-176 27-81 (126)
311 cd05803 PGM_like4 This PGM-lik 27.9 1.6E+02 0.0035 26.4 5.9 53 141-196 197-255 (445)
312 PLN03098 LPA1 LOW PSII ACCUMUL 27.6 1.3E+02 0.0028 27.5 5.1 71 79-150 267-337 (453)
313 KOG2990 C2C2-type Zn-finger pr 27.6 41 0.0009 28.8 1.8 19 110-128 42-63 (317)
314 COG0552 FtsY Signal recognitio 27.4 1.4E+02 0.0031 26.2 5.2 84 107-197 136-233 (340)
315 PRK01158 phosphoglycolate phos 27.3 2.8E+02 0.0061 21.8 6.7 44 128-180 23-66 (230)
316 PRK14317 glmM phosphoglucosami 27.3 2.1E+02 0.0045 25.9 6.5 53 141-196 212-269 (465)
317 TIGR01455 glmM phosphoglucosam 27.2 2.4E+02 0.0051 25.3 6.8 53 141-196 196-253 (443)
318 PRK10200 putative racemase; Pr 27.2 1.2E+02 0.0027 24.7 4.6 44 126-179 60-103 (230)
319 PRK14323 glmM phosphoglucosami 27.1 2.1E+02 0.0046 25.6 6.5 53 141-196 197-254 (440)
320 PF11303 DUF3105: Protein of u 26.8 2.7E+02 0.0059 20.8 6.0 52 118-171 57-117 (130)
321 COG1535 EntB Isochorismate hyd 26.8 1E+02 0.0023 24.8 3.9 37 112-148 42-78 (218)
322 PF10589 NADH_4Fe-4S: NADH-ubi 26.7 11 0.00024 22.9 -1.3 22 118-139 17-38 (46)
323 cd03021 DsbA_GSTK DsbA family, 25.8 2.2E+02 0.0048 22.5 5.8 37 112-149 3-39 (209)
324 PRK14974 cell division protein 25.3 2E+02 0.0044 25.1 5.8 81 108-196 138-233 (336)
325 cd05805 MPG1_transferase GTP-m 25.2 1.9E+02 0.0042 25.8 5.9 53 141-196 192-250 (441)
326 cd03087 PGM_like1 This archaea 25.0 1.9E+02 0.0042 25.7 5.8 53 141-196 188-247 (439)
327 COG0561 Cof Predicted hydrolas 24.7 2.8E+02 0.0061 22.4 6.4 63 110-181 5-67 (264)
328 COG4565 CitB Response regulato 24.3 2.3E+02 0.005 23.4 5.5 42 128-179 10-53 (224)
329 COG3033 TnaA Tryptophanase [Am 23.9 1.8E+02 0.0039 26.2 5.1 65 126-191 170-236 (471)
330 PF06616 BsuBI_PstI_RE: BsuBI/ 23.8 1.5E+02 0.0032 25.7 4.5 73 109-197 227-300 (306)
331 KOG3363 Uncharacterized conser 23.7 1.2E+02 0.0025 24.0 3.5 76 117-196 87-163 (196)
332 PF09499 RE_ApaLI: ApaLI-like 23.6 1.2E+02 0.0027 24.1 3.7 59 81-139 106-174 (191)
333 TIGR00815 sulP high affinity s 23.5 2.8E+02 0.0061 25.8 6.8 53 109-173 495-547 (563)
334 cd01782 AF6_RA_repeat1 Ubiquit 23.5 2.4E+02 0.0053 20.6 4.9 45 142-196 37-81 (112)
335 cd02981 PDI_b_family Protein D 23.1 2.4E+02 0.0051 18.8 5.3 36 108-147 17-52 (97)
336 PF02055 Glyco_hydro_30: O-Gly 23.1 1.7E+02 0.0037 27.0 5.1 25 126-150 206-230 (496)
337 PRK12726 flagellar biosynthesi 23.0 4.3E+02 0.0093 23.9 7.4 73 116-196 213-296 (407)
338 PF08171 Mad3_BUB1_II: Mad3/BU 22.9 28 0.0006 23.2 0.0 23 175-197 2-25 (68)
339 KOG1615 Phosphoserine phosphat 22.9 1.6E+02 0.0034 24.2 4.2 40 127-175 90-129 (227)
340 TIGR01616 nitro_assoc nitrogen 22.8 2.9E+02 0.0063 20.3 5.5 49 112-172 3-51 (126)
341 PF12017 Tnp_P_element: Transp 22.7 3.4E+02 0.0073 22.5 6.4 25 127-151 195-219 (236)
342 PF07476 MAAL_C: Methylasparta 22.6 3.1E+02 0.0066 22.9 5.9 60 121-186 116-175 (248)
343 COG1832 Predicted CoA-binding 22.3 2.1E+02 0.0045 21.9 4.6 54 128-189 7-64 (140)
344 PRK05778 2-oxoglutarate ferred 22.1 78 0.0017 27.2 2.6 22 117-139 18-39 (301)
345 PRK15414 phosphomannomutase Cp 21.8 3.2E+02 0.0069 24.6 6.6 82 108-196 170-259 (456)
346 PRK11889 flhF flagellar biosyn 21.7 3.8E+02 0.0082 24.4 6.8 80 109-196 240-331 (436)
347 COG1245 Predicted ATPase, RNas 21.7 94 0.002 28.9 3.1 26 99-124 34-59 (591)
348 PF02879 PGM_PMM_II: Phosphogl 21.6 2.4E+02 0.0051 19.4 4.7 60 130-195 37-104 (104)
349 PF03960 ArsC: ArsC family; I 21.5 2.6E+02 0.0055 19.7 4.9 48 116-175 2-49 (110)
350 TIGR02000 NifU_proper Fe-S clu 21.5 2.7E+02 0.0059 23.7 5.7 41 96-136 237-279 (290)
351 KOG3323 D-Tyr-tRNA (Tyr) deacy 21.5 1.4E+02 0.0029 22.9 3.4 46 142-196 28-73 (149)
352 COG1791 Uncharacterized conser 21.3 4E+02 0.0086 21.2 6.1 75 96-176 23-97 (181)
353 COG0224 AtpG F0F1-type ATP syn 21.2 4.6E+02 0.0099 22.5 7.0 39 109-147 72-115 (287)
354 TIGR01662 HAD-SF-IIIA HAD-supe 21.2 2.8E+02 0.0061 19.7 5.2 23 127-149 27-49 (132)
355 cd09013 BphC-JF8_N_like N-term 21.1 2E+02 0.0042 20.0 4.2 11 185-195 100-110 (121)
356 PF05378 Hydant_A_N: Hydantoin 20.8 1.7E+02 0.0037 22.9 4.1 44 123-167 129-172 (176)
357 PF02941 FeThRed_A: Ferredoxin 20.7 63 0.0014 21.5 1.3 32 85-116 18-56 (67)
358 COG0796 MurI Glutamate racemas 20.6 3.2E+02 0.0069 23.2 5.9 59 112-179 33-96 (269)
359 PRK06740 histidinol-phosphatas 20.6 3.7E+02 0.0079 23.3 6.5 49 126-179 124-173 (331)
360 KOG1014 17 beta-hydroxysteroid 20.4 1.6E+02 0.0035 25.5 4.1 12 127-138 83-94 (312)
361 KOG4549 Magnesium-dependent ph 20.4 2.7E+02 0.0058 21.2 4.7 54 127-188 46-99 (144)
362 COG0105 Ndk Nucleoside diphosp 20.3 2.6E+02 0.0057 21.2 4.7 33 129-167 18-50 (135)
363 PRK14320 glmM phosphoglucosami 20.2 2.8E+02 0.0061 24.8 5.9 53 141-196 196-253 (443)
364 PHA03357 Alkaline exonuclease; 20.2 43 0.00093 22.7 0.5 28 117-152 10-37 (81)
365 cd01427 HAD_like Haloacid deha 20.0 2.8E+02 0.0061 18.8 4.9 40 125-173 24-63 (139)
No 1
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=100.00 E-value=1.3e-36 Score=250.51 Aligned_cols=184 Identities=67% Similarity=1.003 Sum_probs=161.2
Q ss_pred CCC-ccccccCCccccCCCccCCCcccccccccccccccccccccCCCCccccCcccccCCCCCCccccccccccccchh
Q 029204 5 SMP-FSAAFSSPLRHFTQIKTCPAAWASSMAASWTPTNSIKSSIGSAKPGFLQHGLFSQSSNLPGFFVKRRSFGVHATAA 83 (197)
Q Consensus 5 ~m~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~s~~~p~~~~~~~~~~~~~~~~ 83 (197)
+|+ .+++++++...++..++++++ +++ +|+.+++.++++++|+++++++++++.|+...++|.+.+...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (236)
T PLN02399 3 SLTTSSSSYASFKTVFNSSPPPPSM------AFL--VPSLKSSTGISKSAFLSNGFSLKSPNSPGFLSKSRSFGVYARAA 74 (236)
T ss_pred ccccccccccccccccccCCCCCcc------ccc--cceeeeccccccchhhccccccccCCCccccccccccccccchh
Confidence 444 455666677777766544432 555 99999999999999999999999999999999999999988999
Q ss_pred ccccccceEEEcCCCCeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHH
Q 029204 84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 163 (197)
Q Consensus 84 ~g~~apdf~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~ 163 (197)
.|+.+|||+++|.+|+.++|++++||++||+||++||++|..++|+|++++++|+++|++||+|++|+++.+++++.+++
T Consensus 75 ~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei 154 (236)
T PLN02399 75 TEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 154 (236)
T ss_pred cCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888899999
Q ss_pred HHHHHHhcCCccceEEecCCcc-------------------------eeEEEEcCCCC
Q 029204 164 KEFACTRFKAEFPIFDKVSQTY-------------------------FLMLIIHVEGR 196 (197)
Q Consensus 164 ~~~~~~~~~~~fpi~~d~d~~g-------------------------~~~~ii~~~G~ 196 (197)
++|+.++++++||++.|.|.+| ...||||++|+
T Consensus 155 ~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~Gk 212 (236)
T PLN02399 155 KQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGK 212 (236)
T ss_pred HHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCc
Confidence 9998678999999997655432 24789999997
No 2
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.94 E-value=8.4e-27 Score=188.14 Aligned_cols=100 Identities=39% Similarity=0.712 Sum_probs=94.0
Q ss_pred chhccccccceEEEcCCCCeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCH
Q 029204 81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 160 (197)
Q Consensus 81 ~~~~g~~apdf~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~ 160 (197)
+...+..+|+|+++|.+|+.++|++++||+|||+||++|||+|+.++|.|++++++|+++|++||+|++|+++.++.++.
T Consensus 12 ~~~~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~ 91 (199)
T PTZ00056 12 KDELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNT 91 (199)
T ss_pred chhcCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999888888899
Q ss_pred HHHHHHHHHhcCCccceEEec
Q 029204 161 PEIKEFACTRFKAEFPIFDKV 181 (197)
Q Consensus 161 ~~~~~~~~~~~~~~fpi~~d~ 181 (197)
+++++|+ ++++++||++.|.
T Consensus 92 e~~~~f~-~~~~~~fpvl~d~ 111 (199)
T PTZ00056 92 KDIRKFN-DKNKIKYNFFEPI 111 (199)
T ss_pred HHHHHHH-HHcCCCceeeeee
Confidence 9999999 8999999999764
No 3
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.94 E-value=7.4e-26 Score=174.86 Aligned_cols=108 Identities=57% Similarity=1.017 Sum_probs=95.3
Q ss_pred ccceEEEcCCCCeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHH
Q 029204 88 LYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (197)
Q Consensus 88 apdf~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~ 167 (197)
+|+|+++|.+|+.++|++++||+|||+||++||| |..++|.|++++++|+++|++||+|++|.+..++.++.+++++|+
T Consensus 2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~ 80 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFC 80 (152)
T ss_pred cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHH
Confidence 6899999999999999999999999999999999 999999999999999999999999999877666668889999999
Q ss_pred HHhcCCccceEEecCCcc-------------e------------eEEEEcCCCC
Q 029204 168 CTRFKAEFPIFDKVSQTY-------------F------------LMLIIHVEGR 196 (197)
Q Consensus 168 ~~~~~~~fpi~~d~d~~g-------------~------------~~~ii~~~G~ 196 (197)
.++++++||++.|.|.++ . ..||||.+|+
T Consensus 81 ~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~ 134 (152)
T cd00340 81 ETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGE 134 (152)
T ss_pred HHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCc
Confidence 434899999998643222 1 3789999997
No 4
>PLN02412 probable glutathione peroxidase
Probab=99.93 E-value=8.5e-26 Score=177.48 Aligned_cols=113 Identities=71% Similarity=1.153 Sum_probs=100.2
Q ss_pred ccccccceEEEcCCCCeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHH
Q 029204 84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 163 (197)
Q Consensus 84 ~g~~apdf~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~ 163 (197)
....+|+|+++|.+|+.++|++++||++||+||++|||+|+.++++|++++++|+++|++||+|++|++..++.++.+++
T Consensus 5 ~~~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~ 84 (167)
T PLN02412 5 SPKSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEI 84 (167)
T ss_pred cCCCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHH
Confidence 44789999999999999999999999999999999999999999999999999999999999999998877777888898
Q ss_pred HHHHHHhcCCccceEEecCCcc-------------------------eeEEEEcCCCC
Q 029204 164 KEFACTRFKAEFPIFDKVSQTY-------------------------FLMLIIHVEGR 196 (197)
Q Consensus 164 ~~~~~~~~~~~fpi~~d~d~~g-------------------------~~~~ii~~~G~ 196 (197)
++++.++++++||++.|.|.+| ...||||.+|+
T Consensus 85 ~~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~ 142 (167)
T PLN02412 85 QQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGK 142 (167)
T ss_pred HHHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCc
Confidence 8876589999999997533221 25689999996
No 5
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.92 E-value=1.2e-24 Score=168.08 Aligned_cols=109 Identities=44% Similarity=0.802 Sum_probs=96.3
Q ss_pred ccceEEEcCCCCeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHH
Q 029204 88 LYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (197)
Q Consensus 88 apdf~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~ 167 (197)
+.+|+++|.+|++++|++++||++||+||++|||+|..++|+|++++++|+++|++||+|++++++.++.++.+++++|+
T Consensus 2 ~~~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~ 81 (153)
T TIGR02540 2 FYSFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFA 81 (153)
T ss_pred cccceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999888778788999999999
Q ss_pred HHhcCCccceEEecCC-----c---c--------ee-----EEEEcCCCC
Q 029204 168 CTRFKAEFPIFDKVSQ-----T---Y--------FL-----MLIIHVEGR 196 (197)
Q Consensus 168 ~~~~~~~fpi~~d~d~-----~---g--------~~-----~~ii~~~G~ 196 (197)
+++++++||++.|.++ . + .+ .||||.+|+
T Consensus 82 ~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~ 131 (153)
T TIGR02540 82 RRNYGVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQ 131 (153)
T ss_pred HHhcCCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCc
Confidence 4348999999976321 1 1 11 799999997
No 6
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.92 E-value=9.8e-25 Score=173.76 Aligned_cols=97 Identities=56% Similarity=1.029 Sum_probs=87.6
Q ss_pred ccccccceEEEcCCCCeEecCccCCcE-EEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHH
Q 029204 84 TEKSLYDFTVKDIDGKDVPLSKFKGKV-LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE 162 (197)
Q Consensus 84 ~g~~apdf~l~d~~G~~v~l~~~~gk~-vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~ 162 (197)
.+..+|+|+++|.+|+.++|++++||+ ||+.||++|||+|+.++|.|++++++|+++|++||+|++|++..+++++.++
T Consensus 16 ~~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~ 95 (183)
T PTZ00256 16 PTKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPE 95 (183)
T ss_pred CCCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHH
Confidence 467899999999999999999999995 4566799999999999999999999999999999999998776677778899
Q ss_pred HHHHHHHhcCCccceEEe
Q 029204 163 IKEFACTRFKAEFPIFDK 180 (197)
Q Consensus 163 ~~~~~~~~~~~~fpi~~d 180 (197)
+++|+.++++++||++.|
T Consensus 96 ~~~f~~~~~~~~fpv~~d 113 (183)
T PTZ00256 96 IKEYVQKKFNVDFPLFQK 113 (183)
T ss_pred HHHHHHHhcCCCCCCceE
Confidence 999985688999999976
No 7
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.92 E-value=1.3e-24 Score=173.08 Aligned_cols=101 Identities=48% Similarity=0.831 Sum_probs=95.3
Q ss_pred ccccceEEEcCCCCeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHH
Q 029204 86 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKE 165 (197)
Q Consensus 86 ~~apdf~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~ 165 (197)
..+++|+++|++|+.++|++|+||+|||+|||+||++|. +++.|++++++|+++|++||+|++|+|+.||+++.+++++
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~ 81 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKT 81 (183)
T ss_pred CCccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHH
Confidence 368999999999999999999999999999999999996 7999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccceEEecCCccee
Q 029204 166 FACTRFKAEFPIFDKVSQTYFL 187 (197)
Q Consensus 166 ~~~~~~~~~fpi~~d~d~~g~~ 187 (197)
|++++++++||++.|.|++|..
T Consensus 82 f~~~~~g~~Fpv~~k~dvnG~~ 103 (183)
T PRK10606 82 YCRTTWGVTFPMFSKIEVNGEG 103 (183)
T ss_pred HHHHccCCCceeEEEEccCCCC
Confidence 9954899999999999998874
No 8
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.2e-23 Score=157.78 Aligned_cols=100 Identities=59% Similarity=1.067 Sum_probs=96.9
Q ss_pred cccceEEEcCCCCeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHH
Q 029204 87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEF 166 (197)
Q Consensus 87 ~apdf~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~ 166 (197)
.+.||++++++|++++|++|+||++||+..|+.|++.. ++..|+.||++|+++|++|+++.||+|.+||+++.+++++|
T Consensus 4 ~~yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~f 82 (162)
T COG0386 4 SIYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKF 82 (162)
T ss_pred ccccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHH
Confidence 56899999999999999999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred HHHhcCCccceEEecCCccee
Q 029204 167 ACTRFKAEFPIFDKVSQTYFL 187 (197)
Q Consensus 167 ~~~~~~~~fpi~~d~d~~g~~ 187 (197)
+..+||++||++.+.+++|..
T Consensus 83 C~~~YgVtFp~f~Ki~VnG~~ 103 (162)
T COG0386 83 CQLNYGVTFPMFSKIDVNGKN 103 (162)
T ss_pred HHhccCceeeeeeEEeecCCC
Confidence 999999999999999999873
No 9
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.89 E-value=2.3e-22 Score=148.76 Aligned_cols=104 Identities=29% Similarity=0.568 Sum_probs=93.5
Q ss_pred ccccccceEEEcCCCCeEecCccCCcEEEEEEecC-CCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHH
Q 029204 84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVAS-RCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE 162 (197)
Q Consensus 84 ~g~~apdf~l~d~~G~~v~l~~~~gk~vlv~F~a~-wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~ 162 (197)
+|+.+|+|++++.+|+.++|++++||++||+||++ ||+.|..++++|++++++|+++|+++++|+.| +.++
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d--------~~~~ 72 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTD--------DPEE 72 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESS--------SHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccc--------cccc
Confidence 58999999999999999999999999999999999 99999999999999999999999999999986 6778
Q ss_pred HHHHHHHhcCCccceEEecCCcc---------------eeEEEEcCCCC
Q 029204 163 IKEFACTRFKAEFPIFDKVSQTY---------------FLMLIIHVEGR 196 (197)
Q Consensus 163 ~~~~~~~~~~~~fpi~~d~d~~g---------------~~~~ii~~~G~ 196 (197)
+++++ ++++++||++.|.+... ...||||.+|+
T Consensus 73 ~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~ 120 (124)
T PF00578_consen 73 IKQFL-EEYGLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGK 120 (124)
T ss_dssp HHHHH-HHHTCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSB
T ss_pred hhhhh-hhhccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCE
Confidence 99998 88899999999955221 14559999986
No 10
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.88 E-value=6.4e-22 Score=151.03 Aligned_cols=105 Identities=30% Similarity=0.543 Sum_probs=89.9
Q ss_pred hccccccceEEEc--CCCCeEecCccCCcEEEEEEecC-CCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCC
Q 029204 83 ATEKSLYDFTVKD--IDGKDVPLSKFKGKVLLIVNVAS-RCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (197)
Q Consensus 83 ~~g~~apdf~l~d--~~G~~v~l~~~~gk~vlv~F~a~-wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~ 159 (197)
.+|+.+|+|++++ .+|+.+++++++||++||+||++ |||+|+.++|.|++++++|+++|+++|+|+.+ .+
T Consensus 1 k~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~-------~~ 73 (146)
T PF08534_consen 1 KVGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSD-------DD 73 (146)
T ss_dssp STTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEES-------SS
T ss_pred CCCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEeccc-------CC
Confidence 3789999999966 99999999999999999999999 99999999999999999999999999999986 23
Q ss_pred HHHHHHHHHHhcCCccceEEecC--------Cc---------ce-eEEEEcCCCC
Q 029204 160 NPEIKEFACTRFKAEFPIFDKVS--------QT---------YF-LMLIIHVEGR 196 (197)
Q Consensus 160 ~~~~~~~~~~~~~~~fpi~~d~d--------~~---------g~-~~~ii~~~G~ 196 (197)
. .+.+|+ ++++.+||++.|.+ .. +. ..++||++|+
T Consensus 74 ~-~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~ 126 (146)
T PF08534_consen 74 P-PVREFL-KKYGINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGK 126 (146)
T ss_dssp H-HHHHHH-HHTTTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSB
T ss_pred H-HHHHHH-HhhCCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCE
Confidence 3 389998 77899999999863 22 33 4569999996
No 11
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.5e-22 Score=152.71 Aligned_cols=106 Identities=62% Similarity=1.034 Sum_probs=102.1
Q ss_pred chhccccccceEEEcCCCCeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCH
Q 029204 81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 160 (197)
Q Consensus 81 ~~~~g~~apdf~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~ 160 (197)
.......+.||+.+|++|+.|+|++|+||++||...|+.|+....++.+|++|+++|+++|++|+++.||+|+.||++++
T Consensus 7 ~~~~~~siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n 86 (171)
T KOG1651|consen 7 HADEKGSIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSN 86 (171)
T ss_pred hhhhhcceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCc
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCccceEEecCCcce
Q 029204 161 PEIKEFACTRFKAEFPIFDKVSQTYF 186 (197)
Q Consensus 161 ~~~~~~~~~~~~~~fpi~~d~d~~g~ 186 (197)
+|+.+|++.+++..||++.+.|+||.
T Consensus 87 ~Ei~~f~~~r~~~~f~if~KidVNG~ 112 (171)
T KOG1651|consen 87 EEILNFVKVRYGAEFPIFQKIDVNGD 112 (171)
T ss_pred HHHHHHHHhccCCCCccEeEEecCCC
Confidence 99999999999999999999999987
No 12
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.9e-21 Score=149.41 Aligned_cols=95 Identities=21% Similarity=0.335 Sum_probs=88.6
Q ss_pred hhccccccceEEEcCCCCeEecCccCCcEEEEEEe-cCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCH
Q 029204 82 AATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 160 (197)
Q Consensus 82 ~~~g~~apdf~l~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~ 160 (197)
..+|+.+|||++++.+|+.++|++++||+|||+|| ..++|.|..|...+++.+++|++.|.+|||||.| +.
T Consensus 4 l~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~D--------s~ 75 (157)
T COG1225 4 LKVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPD--------SP 75 (157)
T ss_pred CCCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCC--------CH
Confidence 46899999999999999999999999998888887 8899999999999999999999999999999975 88
Q ss_pred HHHHHHHHHhcCCccceEEecCCcc
Q 029204 161 PEIKEFACTRFKAEFPIFDKVSQTY 185 (197)
Q Consensus 161 ~~~~~~~~~~~~~~fpi~~d~d~~g 185 (197)
+..++|+ ++++++||++.|.+...
T Consensus 76 ~~~~~F~-~k~~L~f~LLSD~~~~v 99 (157)
T COG1225 76 KSHKKFA-EKHGLTFPLLSDEDGEV 99 (157)
T ss_pred HHHHHHH-HHhCCCceeeECCcHHH
Confidence 9999999 99999999999987553
No 13
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.85 E-value=5.9e-21 Score=145.88 Aligned_cols=105 Identities=21% Similarity=0.359 Sum_probs=92.5
Q ss_pred hccccccceEEEcCCCCeEecCccCC-cEEEEEEe-cCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCH
Q 029204 83 ATEKSLYDFTVKDIDGKDVPLSKFKG-KVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 160 (197)
Q Consensus 83 ~~g~~apdf~l~d~~G~~v~l~~~~g-k~vlv~F~-a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~ 160 (197)
.+|+.+|+|++.+.+|+.+++++++| |++||+|| ++||+.|..++++|++++++|+++|+++|+|+.| ..
T Consensus 2 ~~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d--------~~ 73 (149)
T cd03018 2 EVGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVD--------SP 73 (149)
T ss_pred CCCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCC--------CH
Confidence 47899999999999999999999999 99888887 9999999999999999999999999999999975 56
Q ss_pred HHHHHHHHHhcCCccceEEecC--Cc-----c----------eeEEEEcCCCC
Q 029204 161 PEIKEFACTRFKAEFPIFDKVS--QT-----Y----------FLMLIIHVEGR 196 (197)
Q Consensus 161 ~~~~~~~~~~~~~~fpi~~d~d--~~-----g----------~~~~ii~~~G~ 196 (197)
+.+++|+ ++++++||++.|.+ .. | ...||||.+|+
T Consensus 74 ~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~ 125 (149)
T cd03018 74 FSLRAWA-EENGLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGI 125 (149)
T ss_pred HHHHHHH-HhcCCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCE
Confidence 7899999 88899999999865 21 1 13579999986
No 14
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.85 E-value=3.6e-21 Score=151.10 Aligned_cols=111 Identities=23% Similarity=0.400 Sum_probs=97.5
Q ss_pred cccccceEEEcCCCCeEecCcc-CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHH
Q 029204 85 EKSLYDFTVKDIDGKDVPLSKF-KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 163 (197)
Q Consensus 85 g~~apdf~l~d~~G~~v~l~~~-~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~ 163 (197)
|+.+|+|+++|.+|+.++++++ +||++||+||++|||.|..+++.|++++++|++++++||+|+.|....++.++.+++
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~ 80 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENM 80 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHH
Confidence 5789999999999999999998 999999999999999999999999999999998899999999986444444688999
Q ss_pred HHHHHHhcCCccceEEecCCcce---------eEEEEcCCCC
Q 029204 164 KEFACTRFKAEFPIFDKVSQTYF---------LMLIIHVEGR 196 (197)
Q Consensus 164 ~~~~~~~~~~~fpi~~d~d~~g~---------~~~ii~~~G~ 196 (197)
++|+ ++++++||++.|.+.... ..||||.+|+
T Consensus 81 ~~~~-~~~~~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~ 121 (171)
T cd02969 81 KAKA-KEHGYPFPYLLDETQEVAKAYGAACTPDFFLFDPDGK 121 (171)
T ss_pred HHHH-HHCCCCceEEECCchHHHHHcCCCcCCcEEEECCCCe
Confidence 9999 789999999998763222 4669999986
No 15
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=99.85 E-value=6.3e-21 Score=139.39 Aligned_cols=100 Identities=64% Similarity=1.080 Sum_probs=93.3
Q ss_pred ccceEEEcCCCCeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHH
Q 029204 88 LYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (197)
Q Consensus 88 apdf~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~ 167 (197)
+.||+++|++|+.++|++|+||++||...|+.|+... ++..|++|+++|+++|++|+++.+|+|+.||+++.+++++++
T Consensus 1 iYdf~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~ 79 (108)
T PF00255_consen 1 IYDFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFC 79 (108)
T ss_dssp GGGSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHH
T ss_pred CcceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHH
Confidence 4689999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHhcCCccceEEecCCcceeE
Q 029204 168 CTRFKAEFPIFDKVSQTYFLM 188 (197)
Q Consensus 168 ~~~~~~~fpi~~d~d~~g~~~ 188 (197)
..+++++||++.+.+++|...
T Consensus 80 ~~~~~~~F~vf~ki~VnG~~a 100 (108)
T PF00255_consen 80 KEKFGVTFPVFEKIDVNGPDA 100 (108)
T ss_dssp CHCHT-SSEEBS-BBSSSTTB
T ss_pred HhccCCcccceEEEEecCCCC
Confidence 777999999999999998743
No 16
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.85 E-value=9e-21 Score=146.22 Aligned_cols=92 Identities=17% Similarity=0.290 Sum_probs=84.7
Q ss_pred hhccccccceEEEcCCCCeEecCccCCcEEEEEEecC-CCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCH
Q 029204 82 AATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVAS-RCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 160 (197)
Q Consensus 82 ~~~g~~apdf~l~d~~G~~v~l~~~~gk~vlv~F~a~-wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~ 160 (197)
...|+.+|+|+++|.+|+.+++++++||++||+||++ ||+.|..+++.|++++++++++|++||+|+.| +.
T Consensus 4 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d--------~~ 75 (154)
T PRK09437 4 LKAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD--------KP 75 (154)
T ss_pred CCCCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------CH
Confidence 4579999999999999999999999999999999976 68889999999999999999999999999975 57
Q ss_pred HHHHHHHHHhcCCccceEEecC
Q 029204 161 PEIKEFACTRFKAEFPIFDKVS 182 (197)
Q Consensus 161 ~~~~~~~~~~~~~~fpi~~d~d 182 (197)
+++++|+ ++++++||++.|.+
T Consensus 76 ~~~~~~~-~~~~~~~~~l~D~~ 96 (154)
T PRK09437 76 EKLSRFA-EKELLNFTLLSDED 96 (154)
T ss_pred HHHHHHH-HHhCCCCeEEECCC
Confidence 8999999 78899999999864
No 17
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.85 E-value=9.2e-21 Score=143.24 Aligned_cols=102 Identities=23% Similarity=0.408 Sum_probs=90.8
Q ss_pred ccccceEEEcCCCCeEecCccCCcEEEEEEe-cCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHH
Q 029204 86 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIK 164 (197)
Q Consensus 86 ~~apdf~l~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~ 164 (197)
+.+|+|+++|.+|+.+++++++||++||+|| ++|||+|..+++.|++++++|+++|++||+|+.| +.++++
T Consensus 1 ~~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d--------~~~~~~ 72 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPD--------SVESHA 72 (140)
T ss_pred CCCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------CHHHHH
Confidence 3689999999999999999999999999999 5899999999999999999999999999999975 578899
Q ss_pred HHHHHhcCCccceEEecCCcc------------------eeEEEEcCCCC
Q 029204 165 EFACTRFKAEFPIFDKVSQTY------------------FLMLIIHVEGR 196 (197)
Q Consensus 165 ~~~~~~~~~~fpi~~d~d~~g------------------~~~~ii~~~G~ 196 (197)
+|+ ++++++||++.|.+... ..+||||.+|+
T Consensus 73 ~~~-~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~ 121 (140)
T cd03017 73 KFA-EKYGLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGK 121 (140)
T ss_pred HHH-HHhCCCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCE
Confidence 999 78899999999875332 25679999886
No 18
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.84 E-value=2.6e-20 Score=141.70 Aligned_cols=102 Identities=17% Similarity=0.231 Sum_probs=88.3
Q ss_pred ccccccceEEEcCCCCeEecCccCCcEEEEEEecCC-CCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHH
Q 029204 84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASR-CGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE 162 (197)
Q Consensus 84 ~g~~apdf~l~d~~G~~v~l~~~~gk~vlv~F~a~w-C~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~ 162 (197)
.|+.+|+|+++|.+|+.++|++++||++||+||++| |++|+.+++.|++++++|+ |+.||+|+.| ..+.
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d--------~~~~ 71 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISAD--------LPFA 71 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECC--------CHHH
Confidence 689999999999999999999999999999999998 6999999999999999984 7999999976 4667
Q ss_pred HHHHHHHhcCC-ccceEEecC-Ccc---------------eeEEEEcCCCC
Q 029204 163 IKEFACTRFKA-EFPIFDKVS-QTY---------------FLMLIIHVEGR 196 (197)
Q Consensus 163 ~~~~~~~~~~~-~fpi~~d~d-~~g---------------~~~~ii~~~G~ 196 (197)
+++|. ++++. .||++.|.+ ... ...||||.+|+
T Consensus 72 ~~~~~-~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~ 121 (143)
T cd03014 72 QKRWC-GAEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGK 121 (143)
T ss_pred HHHHH-HhcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCe
Confidence 88888 77786 799999875 221 24578999886
No 19
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.83 E-value=9.9e-21 Score=141.57 Aligned_cols=96 Identities=21% Similarity=0.386 Sum_probs=82.6
Q ss_pred CCeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccce
Q 029204 98 GKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPI 177 (197)
Q Consensus 98 G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi 177 (197)
|+.+++++++||++||+||++||++|..+++.|++++++|+++|++||+|+.+++.. .++.+++++|+ ++++++||+
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~--~~~~~~~~~~~-~~~~~~~p~ 89 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAF--ERDLANVKSAV-LRYGITYPV 89 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCcccc--ccCHHHHHHHH-HHcCCCCCE
Confidence 578999999999999999999999999999999999999999999999998764322 36788999999 889999999
Q ss_pred EEecCCc--------ce-eEEEEcCCCC
Q 029204 178 FDKVSQT--------YF-LMLIIHVEGR 196 (197)
Q Consensus 178 ~~d~d~~--------g~-~~~ii~~~G~ 196 (197)
+.|.+.. +. ..||||.+|+
T Consensus 90 ~~D~~~~~~~~~~v~~~P~~~vid~~G~ 117 (126)
T cd03012 90 ANDNDYATWRAYGNQYWPALYLIDPTGN 117 (126)
T ss_pred EECCchHHHHHhCCCcCCeEEEECCCCc
Confidence 9987532 22 4559999986
No 20
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.83 E-value=5.3e-20 Score=144.49 Aligned_cols=104 Identities=15% Similarity=0.187 Sum_probs=89.6
Q ss_pred hhccccccceEEEcCCCCeEecCccCCcEEEEEEecCC-CCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCH
Q 029204 82 AATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASR-CGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 160 (197)
Q Consensus 82 ~~~g~~apdf~l~d~~G~~v~l~~~~gk~vlv~F~a~w-C~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~ 160 (197)
...|+.+|+|+++|.+|+.++|++++||++||+||++| |++|..+++.|+++++++. |++||+|+.| +.
T Consensus 18 ~~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D--------~~ 87 (167)
T PRK00522 18 PQVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISAD--------LP 87 (167)
T ss_pred CCCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCC--------CH
Confidence 35899999999999999999999999999999999999 9999999999999999993 7999999976 45
Q ss_pred HHHHHHHHHhcCCc-cceEEec-C--------Ccce----------eEEEEcCCCC
Q 029204 161 PEIKEFACTRFKAE-FPIFDKV-S--------QTYF----------LMLIIHVEGR 196 (197)
Q Consensus 161 ~~~~~~~~~~~~~~-fpi~~d~-d--------~~g~----------~~~ii~~~G~ 196 (197)
+..++|+ +++++. ||++.|. + +.+. ..||||.+|+
T Consensus 88 ~~~~~f~-~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~ 142 (167)
T PRK00522 88 FAQKRFC-GAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNK 142 (167)
T ss_pred HHHHHHH-HhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCe
Confidence 6788898 788997 7999883 3 1111 4579999986
No 21
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.83 E-value=4.7e-20 Score=134.79 Aligned_cols=98 Identities=15% Similarity=0.310 Sum_probs=83.4
Q ss_pred cceEEEcCCCCeEecCccC-CcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHH
Q 029204 89 YDFTVKDIDGKDVPLSKFK-GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (197)
Q Consensus 89 pdf~l~d~~G~~v~l~~~~-gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~ 167 (197)
|+|+++|.+|+.+++.+++ ||++||+||++||++|+.++|.|++++++|++ ++.+++|+ + ++.++.++++
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~-~-------~~~~~~~~~~ 71 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLAS-D-------GEKAEHQRFL 71 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEe-C-------CCHHHHHHHH
Confidence 7899999999999999997 99999999999999999999999999999865 48888875 4 4678889999
Q ss_pred HHhcCCc-cceEEecC------Ccce-eEEEEcCCCC
Q 029204 168 CTRFKAE-FPIFDKVS------QTYF-LMLIIHVEGR 196 (197)
Q Consensus 168 ~~~~~~~-fpi~~d~d------~~g~-~~~ii~~~G~ 196 (197)
+++++. ||++.+.+ +.+. .+|+||.+|+
T Consensus 72 -~~~~~~~~p~~~~~~~~~~~~~~~~P~~~vid~~G~ 107 (114)
T cd02967 72 -KKHGLEAFPYVLSAELGMAYQVSKLPYAVLLDEAGV 107 (114)
T ss_pred -HHhCCCCCcEEecHHHHhhcCCCCcCeEEEECCCCe
Confidence 888985 99887543 3322 5679999996
No 22
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.82 E-value=9.1e-20 Score=138.07 Aligned_cols=90 Identities=23% Similarity=0.386 Sum_probs=81.7
Q ss_pred cccceEEEcCCCCeEecCccCCcEEEEEEecCCCCC-cHHHHHHHHHHHHHHccCC---cEEEEEeCCCCCCCCCCCHHH
Q 029204 87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGL-TPSNYSELSHLYEKYKTQG---FEILAFPCNQFGGQEPGSNPE 162 (197)
Q Consensus 87 ~apdf~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~-C~~~~~~L~~l~~~~~~~g---v~vv~Is~d~~~~~~~~~~~~ 162 (197)
.+|+|+++|.+|+.+++.+++||++||+||++||++ |..+++.|++++++|+++| +++|+|+.|. +.++.+.
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~----~~d~~~~ 76 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP----ERDTPEV 76 (142)
T ss_pred CCCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC----CCCCHHH
Confidence 379999999999999999999999999999999997 9999999999999999875 9999999873 2367889
Q ss_pred HHHHHHHhcCCccceEEec
Q 029204 163 IKEFACTRFKAEFPIFDKV 181 (197)
Q Consensus 163 ~~~~~~~~~~~~fpi~~d~ 181 (197)
+++|+ ++++.+||++.|.
T Consensus 77 ~~~~~-~~~~~~~~~l~~~ 94 (142)
T cd02968 77 LKAYA-KAFGPGWIGLTGT 94 (142)
T ss_pred HHHHH-HHhCCCcEEEECC
Confidence 99999 8889999999875
No 23
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.82 E-value=5.5e-20 Score=143.82 Aligned_cols=109 Identities=24% Similarity=0.480 Sum_probs=96.7
Q ss_pred cchhccccccceEEEcCCCCeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCC
Q 029204 80 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (197)
Q Consensus 80 ~~~~~g~~apdf~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~ 159 (197)
.....|..+|+|++++.+|+.+++++++||+++|+||++||++|+.+++.|++++++|+++++++++|+.| ++
T Consensus 33 ~~~~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d-------~~ 105 (173)
T PRK03147 33 EKVQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVD-------ET 105 (173)
T ss_pred cccCCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcC-------CC
Confidence 34568999999999999999999999999999999999999999999999999999999989999999987 56
Q ss_pred HHHHHHHHHHhcCCccceEEecCCcce---------eEEEEcCCCC
Q 029204 160 NPEIKEFACTRFKAEFPIFDKVSQTYF---------LMLIIHVEGR 196 (197)
Q Consensus 160 ~~~~~~~~~~~~~~~fpi~~d~d~~g~---------~~~ii~~~G~ 196 (197)
.+++++|+ ++++++||++.|.+.... ..|+||.+|+
T Consensus 106 ~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~ 150 (173)
T PRK03147 106 ELAVKNFV-NRYGLTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGK 150 (173)
T ss_pred HHHHHHHH-HHhCCCceEEECCcchHHHHcCCCCcCeEEEECCCCc
Confidence 78899999 889999999988643322 3569998886
No 24
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.82 E-value=4.7e-20 Score=137.66 Aligned_cols=99 Identities=16% Similarity=0.167 Sum_probs=85.2
Q ss_pred cccceEEEcCCC--CeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHH
Q 029204 87 SLYDFTVKDIDG--KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIK 164 (197)
Q Consensus 87 ~apdf~l~d~~G--~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~ 164 (197)
.+|+|+++|++| +.+++++++||++||+||++||++|+.+++.|+++.+++ +++||+|+.+ ++.++++
T Consensus 2 ~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~-------~~~~~~~ 71 (127)
T cd03010 2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYK-------DNPENAL 71 (127)
T ss_pred CCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECC-------CCHHHHH
Confidence 579999999999 889999999999999999999999999999999998876 4999999976 5788999
Q ss_pred HHHHHhcCCccc-eEEec--------CCccee-EEEEcCCCC
Q 029204 165 EFACTRFKAEFP-IFDKV--------SQTYFL-MLIIHVEGR 196 (197)
Q Consensus 165 ~~~~~~~~~~fp-i~~d~--------d~~g~~-~~ii~~~G~ 196 (197)
+|+ +++++.|+ ++.|. ++.+.+ .|+||++|+
T Consensus 72 ~~~-~~~~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~ 112 (127)
T cd03010 72 AWL-ARHGNPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGI 112 (127)
T ss_pred HHH-HhcCCCCceEEECCcchHHHhcCCCCCCeEEEECCCce
Confidence 999 88899987 44443 444545 779999996
No 25
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.82 E-value=4.2e-20 Score=147.26 Aligned_cols=103 Identities=14% Similarity=0.200 Sum_probs=85.8
Q ss_pred hhccccccceEEEcCCC--CeEecCcc-CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCC
Q 029204 82 AATEKSLYDFTVKDIDG--KDVPLSKF-KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG 158 (197)
Q Consensus 82 ~~~g~~apdf~l~d~~G--~~v~l~~~-~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~ 158 (197)
...|..+|+|+++|.+| +.++++++ +||++||+||++||++|+.++|.|+++++ +|++||+|+.+ +
T Consensus 39 ~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~~~vi~v~~~-------~ 107 (185)
T PRK15412 39 ALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QGIRVVGMNYK-------D 107 (185)
T ss_pred hhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cCCEEEEEECC-------C
Confidence 46889999999999984 77777765 89999999999999999999999988854 47999999976 4
Q ss_pred CHHHHHHHHHHhcCCccce-EEec--------CCccee-EEEEcCCCC
Q 029204 159 SNPEIKEFACTRFKAEFPI-FDKV--------SQTYFL-MLIIHVEGR 196 (197)
Q Consensus 159 ~~~~~~~~~~~~~~~~fpi-~~d~--------d~~g~~-~~ii~~~G~ 196 (197)
+.+++++|+ ++++++||+ +.|. ++.+.+ .|+||.+|+
T Consensus 108 ~~~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~ 154 (185)
T PRK15412 108 DRQKAISWL-KELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGI 154 (185)
T ss_pred CHHHHHHHH-HHcCCCCceEEEcCCccHHHhcCCCcCCeEEEECCCce
Confidence 678899999 888999995 6554 344445 789999996
No 26
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.82 E-value=4.6e-20 Score=147.42 Aligned_cols=106 Identities=19% Similarity=0.260 Sum_probs=87.4
Q ss_pred hccccccceEEEc-CCCC--eEecCccCCcEEEEEEe-cCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCC
Q 029204 83 ATEKSLYDFTVKD-IDGK--DVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG 158 (197)
Q Consensus 83 ~~g~~apdf~l~d-~~G~--~v~l~~~~gk~vlv~F~-a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~ 158 (197)
.+|+.+|+|++.+ .+|+ .+++++++||++||+|| ++||++|..++++|++++++|+++|++||+|+.|
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D-------- 74 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTD-------- 74 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCC--------
Confidence 4789999999999 5776 68888999999999999 9999999999999999999999999999999986
Q ss_pred CHHHHHHHHHH---hcCCccceEEecCCcc---------------eeEEEEcCCCC
Q 029204 159 SNPEIKEFACT---RFKAEFPIFDKVSQTY---------------FLMLIIHVEGR 196 (197)
Q Consensus 159 ~~~~~~~~~~~---~~~~~fpi~~d~d~~g---------------~~~~ii~~~G~ 196 (197)
..+..++|... ..+++||++.|.+... ...||||.+|+
T Consensus 75 ~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~ 130 (187)
T TIGR03137 75 THFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGV 130 (187)
T ss_pred CHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCE
Confidence 34555666522 2378999999865321 23679999885
No 27
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.81 E-value=9.9e-20 Score=143.42 Aligned_cols=104 Identities=23% Similarity=0.319 Sum_probs=87.5
Q ss_pred ccccccceEEEcCCC----CeEecCccCCcEEEEEEe-cCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCC
Q 029204 84 TEKSLYDFTVKDIDG----KDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG 158 (197)
Q Consensus 84 ~g~~apdf~l~d~~G----~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~ 158 (197)
+|+.+|+|++++.+| +.++|++++||++||+|| ++||++|..++++|++++++|.++|++|++|+.|
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d-------- 72 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTD-------- 72 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecC--------
Confidence 488999999999988 789999999999999999 8999999999999999999999999999999986
Q ss_pred CHHHHHHHHHHh-------cCCccceEEecCCcce---------------eEEEEcCCCC
Q 029204 159 SNPEIKEFACTR-------FKAEFPIFDKVSQTYF---------------LMLIIHVEGR 196 (197)
Q Consensus 159 ~~~~~~~~~~~~-------~~~~fpi~~d~d~~g~---------------~~~ii~~~G~ 196 (197)
..+..++|. +. .+++||++.|.+.... ..||||.+|+
T Consensus 73 ~~~~~~~~~-~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~ 131 (173)
T cd03015 73 SHFSHLAWR-NTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGI 131 (173)
T ss_pred CHHHHHHHH-HhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCe
Confidence 334445555 33 4689999998763211 4679999986
No 28
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.81 E-value=1.8e-19 Score=136.00 Aligned_cols=101 Identities=25% Similarity=0.388 Sum_probs=88.9
Q ss_pred cccceEEEcCCCCeEecCccCCcEEEEEEe-cCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHH
Q 029204 87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKE 165 (197)
Q Consensus 87 ~apdf~l~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~ 165 (197)
.+|+|+++|.+|+.+++++++||++||+|| ++||++|..++++|++++++|+++|++||+|+.| +.+++++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d--------~~~~~~~ 72 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD--------SPFSHKA 72 (140)
T ss_pred CCCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHHHHHH
Confidence 479999999999999999999999999999 7899999999999999999998889999999975 5678899
Q ss_pred HHHHhc-CCccceEEecCCc--------ce----------eEEEEcCCCC
Q 029204 166 FACTRF-KAEFPIFDKVSQT--------YF----------LMLIIHVEGR 196 (197)
Q Consensus 166 ~~~~~~-~~~fpi~~d~d~~--------g~----------~~~ii~~~G~ 196 (197)
|+ +++ +.+||++.|.+.. +. .+||||.+|+
T Consensus 73 ~~-~~~~~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~ 121 (140)
T cd02971 73 WA-EKEGGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGK 121 (140)
T ss_pred HH-hcccCCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCc
Confidence 98 777 9999999986531 11 3679999986
No 29
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.80 E-value=4.2e-19 Score=142.06 Aligned_cols=103 Identities=13% Similarity=0.220 Sum_probs=84.9
Q ss_pred hhccccccceEEEcCCCCeEecC--ccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCC
Q 029204 82 AATEKSLYDFTVKDIDGKDVPLS--KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (197)
Q Consensus 82 ~~~g~~apdf~l~d~~G~~v~l~--~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~ 159 (197)
..+|+.+|+|+++|.+|+.+++. +++||++||+||++|||+|+.++|.++++++++ |+++++|+. ++
T Consensus 46 ~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~~~vv~Is~--------~~ 114 (189)
T TIGR02661 46 PDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---ETDVVMISD--------GT 114 (189)
T ss_pred CCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---CCcEEEEeC--------CC
Confidence 46899999999999999999995 579999999999999999999999999998764 578899983 46
Q ss_pred HHHHHHHHHHhcCCccceEEe-------cCCcce-eEEEEcCCCC
Q 029204 160 NPEIKEFACTRFKAEFPIFDK-------VSQTYF-LMLIIHVEGR 196 (197)
Q Consensus 160 ~~~~~~~~~~~~~~~fpi~~d-------~d~~g~-~~~ii~~~G~ 196 (197)
.+++++|+ ++++++|+.+.. +++.+. .+|+||++|+
T Consensus 115 ~~~~~~~~-~~~~~~~~~~~~~~~i~~~y~v~~~P~~~lID~~G~ 158 (189)
T TIGR02661 115 PAEHRRFL-KDHELGGERYVVSAEIGMAFQVGKIPYGVLLDQDGK 158 (189)
T ss_pred HHHHHHHH-HhcCCCcceeechhHHHHhccCCccceEEEECCCCe
Confidence 78899999 888998875432 233333 3579999996
No 30
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.79 E-value=4.3e-19 Score=143.52 Aligned_cols=105 Identities=25% Similarity=0.395 Sum_probs=84.6
Q ss_pred hccccccceEEEcCCCCeEecCccCCcEEEE-EEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHH
Q 029204 83 ATEKSLYDFTVKDIDGKDVPLSKFKGKVLLI-VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP 161 (197)
Q Consensus 83 ~~g~~apdf~l~d~~G~~v~l~~~~gk~vlv-~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~ 161 (197)
.+|+.+|+|++++.+| .+++++++||++|| +||++|||+|..|+++|++++++|+++|++||+|++| +.+
T Consensus 3 ~vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D--------~~~ 73 (202)
T PRK13190 3 KLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVD--------SIY 73 (202)
T ss_pred CCCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHH
Confidence 4799999999999888 69999999997655 6899999999999999999999999999999999987 333
Q ss_pred HHHHHH---HHhcC--CccceEEecCCcc---------------eeEEEEcCCCC
Q 029204 162 EIKEFA---CTRFK--AEFPIFDKVSQTY---------------FLMLIIHVEGR 196 (197)
Q Consensus 162 ~~~~~~---~~~~~--~~fpi~~d~d~~g---------------~~~~ii~~~G~ 196 (197)
..++|+ .++++ ++||++.|.+... ..+||||.+|+
T Consensus 74 ~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~ 128 (202)
T PRK13190 74 SHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQI 128 (202)
T ss_pred HHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCE
Confidence 333333 14555 5899999876332 24458888885
No 31
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.79 E-value=5e-19 Score=144.43 Aligned_cols=109 Identities=15% Similarity=0.207 Sum_probs=87.8
Q ss_pred hccccccceEEEcCCCCeEecCccCCcE-EEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHH
Q 029204 83 ATEKSLYDFTVKDIDGKDVPLSKFKGKV-LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP 161 (197)
Q Consensus 83 ~~g~~apdf~l~d~~G~~v~l~~~~gk~-vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~ 161 (197)
..|+.+|+|++.+.+|+.+.+++++||+ ||++||++|||+|..|++.|++++++|+++|++||+||.|. ..+..
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~-----~~~~~ 77 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQ-----VFSHI 77 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC-----HHHHH
Confidence 4799999999999999988888999996 46788999999999999999999999999999999999873 12233
Q ss_pred HHHHHHHH--hcCCccceEEecCCcc----------------eeEEEEcCCCC
Q 029204 162 EIKEFACT--RFKAEFPIFDKVSQTY----------------FLMLIIHVEGR 196 (197)
Q Consensus 162 ~~~~~~~~--~~~~~fpi~~d~d~~g----------------~~~~ii~~~G~ 196 (197)
.+.+++++ +++++||++.|.+... ...||||.+|+
T Consensus 78 ~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~ 130 (215)
T PRK13599 78 KWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGT 130 (215)
T ss_pred HHHHhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCE
Confidence 34445522 3578999999976322 23468888886
No 32
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.78 E-value=7.5e-19 Score=140.54 Aligned_cols=106 Identities=11% Similarity=0.254 Sum_probs=88.1
Q ss_pred hccccccceEEEcC-CC--CeEecCccCCcEEEEEEe-cCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCC
Q 029204 83 ATEKSLYDFTVKDI-DG--KDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG 158 (197)
Q Consensus 83 ~~g~~apdf~l~d~-~G--~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~ 158 (197)
.+|+++|+|+.+.. +| +.++|++|+||++||+|| ++||++|..|++.|++++++|+++|++||+|+.|
T Consensus 3 ~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D-------- 74 (187)
T PRK10382 3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTD-------- 74 (187)
T ss_pred ccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCC--------
Confidence 57999999998874 34 467888999999999999 9999999999999999999999999999999976
Q ss_pred CHHHHHHHHHHh---cCCccceEEecCCcce---------------eEEEEcCCCC
Q 029204 159 SNPEIKEFACTR---FKAEFPIFDKVSQTYF---------------LMLIIHVEGR 196 (197)
Q Consensus 159 ~~~~~~~~~~~~---~~~~fpi~~d~d~~g~---------------~~~ii~~~G~ 196 (197)
+.+..++|.... .+++||++.|.+.... ..||||.+|+
T Consensus 75 ~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~ 130 (187)
T PRK10382 75 THFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGI 130 (187)
T ss_pred CHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCE
Confidence 677788887332 4889999998753322 3458888885
No 33
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.78 E-value=5.7e-19 Score=139.21 Aligned_cols=104 Identities=16% Similarity=0.218 Sum_probs=84.4
Q ss_pred chhccccccceEEEcCCCC--eEecCcc-CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCC
Q 029204 81 TAATEKSLYDFTVKDIDGK--DVPLSKF-KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEP 157 (197)
Q Consensus 81 ~~~~g~~apdf~l~d~~G~--~v~l~~~-~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~ 157 (197)
...+|..+|+|+++|.+|+ .++++++ +||++||+||++||++|+.++|.++++++ +|++|++|+.+
T Consensus 33 ~~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~------- 101 (173)
T TIGR00385 33 SALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----DGLPIVGVDYK------- 101 (173)
T ss_pred chhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----cCCEEEEEECC-------
Confidence 3468999999999999997 4555565 79999999999999999999999988864 36999999976
Q ss_pred CCHHHHHHHHHHhcCCccc-eEEec--------CCccee-EEEEcCCCC
Q 029204 158 GSNPEIKEFACTRFKAEFP-IFDKV--------SQTYFL-MLIIHVEGR 196 (197)
Q Consensus 158 ~~~~~~~~~~~~~~~~~fp-i~~d~--------d~~g~~-~~ii~~~G~ 196 (197)
+..++.++|+ ++++++|| ++.|. ++.+.+ +++||.+|+
T Consensus 102 ~~~~~~~~~~-~~~~~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~ 149 (173)
T TIGR00385 102 DQSQNALKFL-KELGNPYQAILIDPNGKLGLDLGVYGAPETFLVDGNGV 149 (173)
T ss_pred CChHHHHHHH-HHcCCCCceEEECCCCchHHhcCCeeCCeEEEEcCCce
Confidence 4567778898 88899998 45564 333444 779999996
No 34
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.78 E-value=8.3e-19 Score=134.95 Aligned_cols=89 Identities=11% Similarity=0.207 Sum_probs=70.8
Q ss_pred eEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccC-------CcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcC
Q 029204 100 DVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-------GFEILAFPCNQFGGQEPGSNPEIKEFACTRFK 172 (197)
Q Consensus 100 ~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~-------gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~ 172 (197)
.++|++++||+|+|+|||+|||+|+.++|.|+++|++++++ +++||+|+.| ++.+++++|+ ++.+
T Consensus 17 ~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D-------~~~~~~~~f~-~~~~ 88 (146)
T cd03008 17 REIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMD-------QSEQQQESFL-KDMP 88 (146)
T ss_pred cccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECC-------CCHHHHHHHH-HHCC
Confidence 46778999999999999999999999999999999988653 6999999987 4677789999 7888
Q ss_pred Cccce---EEec--------CCcce-eEEEEcCCCC
Q 029204 173 AEFPI---FDKV--------SQTYF-LMLIIHVEGR 196 (197)
Q Consensus 173 ~~fpi---~~d~--------d~~g~-~~~ii~~~G~ 196 (197)
+.|+. ..+. .+.+. .+++||.+|+
T Consensus 89 ~~~~~~p~~~~~~~~l~~~y~v~~iPt~vlId~~G~ 124 (146)
T cd03008 89 KKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGD 124 (146)
T ss_pred CCceeecccchHHHHHHHHcCCCCCCEEEEECCCCc
Confidence 77643 3221 12222 5569999986
No 35
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.78 E-value=9.2e-19 Score=141.62 Aligned_cols=104 Identities=13% Similarity=0.273 Sum_probs=83.5
Q ss_pred ccccccceEEEcCCCCeEecCccCC-cE-EEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHH
Q 029204 84 TEKSLYDFTVKDIDGKDVPLSKFKG-KV-LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP 161 (197)
Q Consensus 84 ~g~~apdf~l~d~~G~~v~l~~~~g-k~-vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~ 161 (197)
+|+.+|+|++.+.+|+ +++.+++| |+ +|++||++|||+|..++++|++++++|+++|++|++|++| +.+
T Consensus 1 vG~~aP~F~~~~~~g~-~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D--------~~~ 71 (203)
T cd03016 1 LGDTAPNFEADTTHGP-IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVD--------SVE 71 (203)
T ss_pred CcCCCCCeEEecCCCc-EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECC--------CHH
Confidence 4789999999999984 89999988 65 5668899999999999999999999999999999999987 334
Q ss_pred HHHHHHH--H---hcCCccceEEecCCcce-----------------eEEEEcCCCC
Q 029204 162 EIKEFAC--T---RFKAEFPIFDKVSQTYF-----------------LMLIIHVEGR 196 (197)
Q Consensus 162 ~~~~~~~--~---~~~~~fpi~~d~d~~g~-----------------~~~ii~~~G~ 196 (197)
..++|+. + +.+++||++.|.+.... ..||||.+|+
T Consensus 72 ~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~ 128 (203)
T cd03016 72 SHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKK 128 (203)
T ss_pred HHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCe
Confidence 4444431 1 16899999998753211 2679998886
No 36
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.77 E-value=1e-18 Score=142.69 Aligned_cols=110 Identities=15% Similarity=0.256 Sum_probs=84.2
Q ss_pred hhccccccceEEEcCCCCeEecCccCCcEEEE-EEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCH
Q 029204 82 AATEKSLYDFTVKDIDGKDVPLSKFKGKVLLI-VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 160 (197)
Q Consensus 82 ~~~g~~apdf~l~d~~G~~v~l~~~~gk~vlv-~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~ 160 (197)
..+|+.+|||++++.+|+....++++||++|| +||++||++|..|++.|++++++|+++|++||+||+|. ....
T Consensus 7 ~~iG~~aPdF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds-----~~~h 81 (215)
T PRK13191 7 PLIGEKFPEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDS-----NISH 81 (215)
T ss_pred ccCCCcCCCCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCC-----HHHH
Confidence 35899999999999999744435589996555 88999999999999999999999999999999999873 1222
Q ss_pred HHHHHHHHH--hcCCccceEEecCCcc----------------eeEEEEcCCCC
Q 029204 161 PEIKEFACT--RFKAEFPIFDKVSQTY----------------FLMLIIHVEGR 196 (197)
Q Consensus 161 ~~~~~~~~~--~~~~~fpi~~d~d~~g----------------~~~~ii~~~G~ 196 (197)
.++.+++.+ +++++||++.|.+... ...||||.+|+
T Consensus 82 ~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~ 135 (215)
T PRK13191 82 IEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGT 135 (215)
T ss_pred HHHHhhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCE
Confidence 234444422 3578899999875222 23468888885
No 37
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.77 E-value=1e-18 Score=132.87 Aligned_cols=89 Identities=21% Similarity=0.350 Sum_probs=76.3
Q ss_pred cccceEEEcCCCCeEecCccC-Cc-EEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHH
Q 029204 87 SLYDFTVKDIDGKDVPLSKFK-GK-VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIK 164 (197)
Q Consensus 87 ~apdf~l~d~~G~~v~l~~~~-gk-~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~ 164 (197)
.+|+|+++|.+|+.+++.++. +| ++|++||++|||+|+.+++.|++++++|+++|++||+|+.| +.++++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~--------~~~~~~ 72 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPE--------SPEKLE 72 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCC--------CHHHHH
Confidence 379999999999999999874 45 45555579999999999999999999999999999999976 445666
Q ss_pred HHHHHhcCCccceEEecCCc
Q 029204 165 EFACTRFKAEFPIFDKVSQT 184 (197)
Q Consensus 165 ~~~~~~~~~~fpi~~d~d~~ 184 (197)
+|. ++++++||++.|.+..
T Consensus 73 ~~~-~~~~~~~p~~~D~~~~ 91 (149)
T cd02970 73 AFD-KGKFLPFPVYADPDRK 91 (149)
T ss_pred HHH-HhcCCCCeEEECCchh
Confidence 788 7889999999997644
No 38
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.76 E-value=2.8e-18 Score=143.45 Aligned_cols=107 Identities=17% Similarity=0.249 Sum_probs=85.5
Q ss_pred hhccccccceEEEc-CCCC--eEecCcc-CCcEEEEEEe-cCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCC
Q 029204 82 AATEKSLYDFTVKD-IDGK--DVPLSKF-KGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE 156 (197)
Q Consensus 82 ~~~g~~apdf~l~d-~~G~--~v~l~~~-~gk~vlv~F~-a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~ 156 (197)
..+|+.+|||++++ .+|+ .++|+++ +||++||+|| ++||++|..|++.|++++++|+++|++|++|+.|
T Consensus 68 ~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~D------ 141 (261)
T PTZ00137 68 SLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVD------ 141 (261)
T ss_pred ccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC------
Confidence 46999999999988 4664 6899997 8987777776 9999999999999999999999999999999987
Q ss_pred CCCHHHHHHHHH---H---hcCCccceEEecCCcce--------------eEEEEcCCCC
Q 029204 157 PGSNPEIKEFAC---T---RFKAEFPIFDKVSQTYF--------------LMLIIHVEGR 196 (197)
Q Consensus 157 ~~~~~~~~~~~~---~---~~~~~fpi~~d~d~~g~--------------~~~ii~~~G~ 196 (197)
+.+..++|.. + ..+++||++.|.+.... ..||||.+|+
T Consensus 142 --s~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~ 199 (261)
T PTZ00137 142 --SPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGV 199 (261)
T ss_pred --CHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCE
Confidence 3444555542 1 25789999999753322 3358898885
No 39
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.75 E-value=2.4e-18 Score=167.49 Aligned_cols=113 Identities=18% Similarity=0.314 Sum_probs=94.8
Q ss_pred chhccccccceEEEc--CCCCeEec-CccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCC
Q 029204 81 TAATEKSLYDFTVKD--IDGKDVPL-SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEP 157 (197)
Q Consensus 81 ~~~~g~~apdf~l~d--~~G~~v~l-~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~ 157 (197)
....|..+|+|...+ .+|+.+++ ++++||+|||+|||+||++|+.++|.|++++++|++++++||+|+.+.++. .
T Consensus 390 ~~~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~--~ 467 (1057)
T PLN02919 390 SKKTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDN--E 467 (1057)
T ss_pred ccccCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccc--c
Confidence 345789999999876 68999998 589999999999999999999999999999999999999999998764322 3
Q ss_pred CCHHHHHHHHHHhcCCccceEEecCCc--------ce-eEEEEcCCCC
Q 029204 158 GSNPEIKEFACTRFKAEFPIFDKVSQT--------YF-LMLIIHVEGR 196 (197)
Q Consensus 158 ~~~~~~~~~~~~~~~~~fpi~~d~d~~--------g~-~~~ii~~~G~ 196 (197)
++.+++++++ ++++++||++.|.+.. +. ..+|||.+|+
T Consensus 468 ~~~~~~~~~~-~~~~i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~ 514 (1057)
T PLN02919 468 KDLEAIRNAV-LRYNISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGK 514 (1057)
T ss_pred ccHHHHHHHH-HHhCCCccEEECCchHHHHhcCCCccceEEEECCCCe
Confidence 4578899999 8999999999875533 33 3448888886
No 40
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.75 E-value=8.8e-18 Score=120.51 Aligned_cols=100 Identities=31% Similarity=0.556 Sum_probs=87.3
Q ss_pred ceEEEcCCCCeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 029204 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACT 169 (197)
Q Consensus 90 df~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~ 169 (197)
+|++.+.+|+.+++.+++||++||+||++||+.|+..++.|.++.+++++.++.+++|+.|. ++.+++++++ +
T Consensus 1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~------~~~~~~~~~~-~ 73 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDD------DDPAAVKAFL-K 73 (116)
T ss_pred CccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCC------CCHHHHHHHH-H
Confidence 57889999999999999999999999999999999999999999999987789999999872 2589999999 8
Q ss_pred hcCCccceEEecC--------Ccce-eEEEEcCCCC
Q 029204 170 RFKAEFPIFDKVS--------QTYF-LMLIIHVEGR 196 (197)
Q Consensus 170 ~~~~~fpi~~d~d--------~~g~-~~~ii~~~G~ 196 (197)
+++.+|+++.|.+ +.+. ..+|+|.+|+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~ 109 (116)
T cd02966 74 KYGITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGR 109 (116)
T ss_pred HcCCCcceEEcCcchHHHhcCcCccceEEEECCCCc
Confidence 8899999998863 2222 4559999886
No 41
>PRK15000 peroxidase; Provisional
Probab=99.74 E-value=8.6e-18 Score=135.75 Aligned_cols=106 Identities=15% Similarity=0.270 Sum_probs=82.8
Q ss_pred hccccccceEEEcCC--CC---eEecCcc-CCcEEEEEEec-CCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCC
Q 029204 83 ATEKSLYDFTVKDID--GK---DVPLSKF-KGKVLLIVNVA-SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQ 155 (197)
Q Consensus 83 ~~g~~apdf~l~d~~--G~---~v~l~~~-~gk~vlv~F~a-~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~ 155 (197)
.+|+.+|+|++++.. |+ .+++.+| +||++||+||+ +||++|..|+++|++++++|+++|++||+|+.|
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D----- 77 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFD----- 77 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-----
Confidence 378999999999874 44 3566666 89999999998 599999999999999999999999999999987
Q ss_pred CCCCHHHHHHHH---HHhcC---CccceEEecCCcc---------------eeEEEEcCCCC
Q 029204 156 EPGSNPEIKEFA---CTRFK---AEFPIFDKVSQTY---------------FLMLIIHVEGR 196 (197)
Q Consensus 156 ~~~~~~~~~~~~---~~~~~---~~fpi~~d~d~~g---------------~~~~ii~~~G~ 196 (197)
+.+..+.|. .++.| ++||++.|.+... ...||||++|+
T Consensus 78 ---~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~ 136 (200)
T PRK15000 78 ---SEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGI 136 (200)
T ss_pred ---CHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCE
Confidence 334444443 13344 6899999987442 13458998885
No 42
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.74 E-value=8.2e-18 Score=152.12 Aligned_cols=110 Identities=19% Similarity=0.230 Sum_probs=89.4
Q ss_pred hhccccccceEEEcCCCCeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHH
Q 029204 82 AATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP 161 (197)
Q Consensus 82 ~~~g~~apdf~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~ 161 (197)
...++.+|+|++.|.+|+.+.++ +||+|||+|||+||++|+.++|.|++++++|++++++||+|+.+.... .++.+
T Consensus 32 ~~~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~--e~~~~ 107 (521)
T PRK14018 32 ATVPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLH--EKKDG 107 (521)
T ss_pred ccccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccc--cccHH
Confidence 35667899999999999999987 899999999999999999999999999999998889999999854322 24567
Q ss_pred HHHHHHHHhcCC-ccceEEecC--------CcceeEE-EEcCCCC
Q 029204 162 EIKEFACTRFKA-EFPIFDKVS--------QTYFLML-IIHVEGR 196 (197)
Q Consensus 162 ~~~~~~~~~~~~-~fpi~~d~d--------~~g~~~~-ii~~~G~ 196 (197)
++++++ ++.+. .+|++.|.+ +.+.+.. |||++|+
T Consensus 108 ~~~~~~-~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGk 151 (521)
T PRK14018 108 DFQKWY-AGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGD 151 (521)
T ss_pred HHHHHH-HhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCe
Confidence 788887 55555 578888753 3344444 8999986
No 43
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.74 E-value=1.3e-17 Score=125.59 Aligned_cols=89 Identities=21% Similarity=0.354 Sum_probs=72.1
Q ss_pred CeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccC--CcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccc
Q 029204 99 KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFP 176 (197)
Q Consensus 99 ~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~--gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fp 176 (197)
+++++++++||++||+||++||++|+.+++.|++++++|+++ +++|++|+.| ++.+++++|+ ++++ .++
T Consensus 8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d-------~~~~~~~~~~-~~~~-~~~ 78 (132)
T cd02964 8 GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRD-------RSEESFNEYF-SEMP-PWL 78 (132)
T ss_pred ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecC-------CCHHHHHHHH-hcCC-CeE
Confidence 589999999999999999999999999999999999999875 7999999987 4667889998 6776 433
Q ss_pred eE--Ee----------cCCcce-eEEEEcCCCC
Q 029204 177 IF--DK----------VSQTYF-LMLIIHVEGR 196 (197)
Q Consensus 177 i~--~d----------~d~~g~-~~~ii~~~G~ 196 (197)
.+ .| .++.+. .++|||.+|+
T Consensus 79 ~~~~~d~~~~~~~~~~~~v~~iPt~~lid~~G~ 111 (132)
T cd02964 79 AVPFEDEELRELLEKQFKVEGIPTLVVLKPDGD 111 (132)
T ss_pred eeccCcHHHHHHHHHHcCCCCCCEEEEECCCCC
Confidence 33 11 334444 4458998886
No 44
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.73 E-value=1.1e-17 Score=134.85 Aligned_cols=107 Identities=17% Similarity=0.225 Sum_probs=84.3
Q ss_pred hhccccccceEEEc----CCCCeEecCccCCcEEEEEEe-cCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCC
Q 029204 82 AATEKSLYDFTVKD----IDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE 156 (197)
Q Consensus 82 ~~~g~~apdf~l~d----~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~ 156 (197)
...|+.+|||++.+ .+|++++|++|+||++||+|| ++||+.|..++.+|++++++|+++|++||+|+.|.
T Consensus 6 ~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~----- 80 (199)
T PTZ00253 6 AKINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDS----- 80 (199)
T ss_pred cccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCC-----
Confidence 35899999999765 466899999999999999999 58999999999999999999999999999999872
Q ss_pred CCCHHHHHHHHH-Hh-----cCCccceEEecCCcce---------------eEEEEcCCCC
Q 029204 157 PGSNPEIKEFAC-TR-----FKAEFPIFDKVSQTYF---------------LMLIIHVEGR 196 (197)
Q Consensus 157 ~~~~~~~~~~~~-~~-----~~~~fpi~~d~d~~g~---------------~~~ii~~~G~ 196 (197)
.++..++.. .+ .+++||++.|.+.... ..||||.+|+
T Consensus 81 ---~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~ 138 (199)
T PTZ00253 81 ---EYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGM 138 (199)
T ss_pred ---HHHHHHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCE
Confidence 333333321 11 1479999998653322 3458998886
No 45
>PRK13189 peroxiredoxin; Provisional
Probab=99.73 E-value=1.5e-17 Score=136.41 Aligned_cols=105 Identities=18% Similarity=0.344 Sum_probs=83.4
Q ss_pred hccccccceEEEcCCCCeEecCc-cCCcE-EEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCH
Q 029204 83 ATEKSLYDFTVKDIDGKDVPLSK-FKGKV-LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 160 (197)
Q Consensus 83 ~~g~~apdf~l~d~~G~~v~l~~-~~gk~-vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~ 160 (197)
.+|+.+|+|++.+.+|+ +.+.+ ++||+ +|++||++||++|..|+++|++++++|+++|++||+||+| +.
T Consensus 10 ~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D--------~~ 80 (222)
T PRK13189 10 LIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSID--------QV 80 (222)
T ss_pred cCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECC--------CH
Confidence 58999999999999986 67766 59995 5567899999999999999999999999999999999987 34
Q ss_pred HHHHHHHH---Hh--cCCccceEEecCCcce----------------eEEEEcCCCC
Q 029204 161 PEIKEFAC---TR--FKAEFPIFDKVSQTYF----------------LMLIIHVEGR 196 (197)
Q Consensus 161 ~~~~~~~~---~~--~~~~fpi~~d~d~~g~----------------~~~ii~~~G~ 196 (197)
...++|+. ++ .+++||++.|.+.... ..||||.+|+
T Consensus 81 ~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~ 137 (222)
T PRK13189 81 FSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGI 137 (222)
T ss_pred HHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCe
Confidence 44444442 22 3578999998763221 2578888885
No 46
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.73 E-value=1.2e-17 Score=125.27 Aligned_cols=96 Identities=22% Similarity=0.379 Sum_probs=75.0
Q ss_pred EEcCCCCeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccC--CcEEEEEeCCCCCCCCCCCHHHHHHHHHHh
Q 029204 93 VKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKEFACTR 170 (197)
Q Consensus 93 l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~--gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~ 170 (197)
+.|.+|+.+++++++||++||+||++||++|+.++|.|+++++++.++ +++|++|+.| ...++.++++ ++
T Consensus 3 l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d-------~~~~~~~~~~-~~ 74 (131)
T cd03009 3 LLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWD-------RDEESFNDYF-SK 74 (131)
T ss_pred ccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECC-------CCHHHHHHHH-Hc
Confidence 568899999999999999999999999999999999999999999865 6999999987 3567777777 44
Q ss_pred cCC-ccceE---------EecCCcce-eEEEEcCCCC
Q 029204 171 FKA-EFPIF---------DKVSQTYF-LMLIIHVEGR 196 (197)
Q Consensus 171 ~~~-~fpi~---------~d~d~~g~-~~~ii~~~G~ 196 (197)
++. .+|+. ...++.+. .+++||.+|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~ 111 (131)
T cd03009 75 MPWLAVPFSDRERRSRLNRTFKIEGIPTLIILDADGE 111 (131)
T ss_pred CCeeEcccCCHHHHHHHHHHcCCCCCCEEEEECCCCC
Confidence 432 12211 12344444 4558888886
No 47
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.73 E-value=1.5e-17 Score=123.03 Aligned_cols=95 Identities=18% Similarity=0.361 Sum_probs=81.6
Q ss_pred cceEEEcCCCCeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHH
Q 029204 89 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFAC 168 (197)
Q Consensus 89 pdf~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~ 168 (197)
|+|+++|.+|+.+++.+++||++||+||++||++|+.+++.|++++++ +++++|+.|. ++.+++++|+
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~------~~~~~~~~~~- 68 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-----YPVVSVALRS------GDDGAVARFM- 68 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-----CCEEEEEccC------CCHHHHHHHH-
Confidence 799999999999999999999999999999999999999999999877 6788888762 5789999999
Q ss_pred HhcCCccceEEecCCc--------ce-eEEEEcCCC
Q 029204 169 TRFKAEFPIFDKVSQT--------YF-LMLIIHVEG 195 (197)
Q Consensus 169 ~~~~~~fpi~~d~d~~--------g~-~~~ii~~~G 195 (197)
++++++||++.|.+.. +. .++++|.+|
T Consensus 69 ~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g 104 (123)
T cd03011 69 QKKGYGFPVINDPDGVISARWGVSVTPAIVIVDPGG 104 (123)
T ss_pred HHcCCCccEEECCCcHHHHhCCCCcccEEEEEcCCC
Confidence 8889999999886532 22 445777766
No 48
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.69 E-value=5.4e-17 Score=126.09 Aligned_cols=96 Identities=16% Similarity=0.198 Sum_probs=81.7
Q ss_pred ccccccceEEEcCC---CCeEecCc-cCCcEE-EEEEecCCCCCcHHH-HHHHHHHHHHHccCCc-EEEEEeCCCCCCCC
Q 029204 84 TEKSLYDFTVKDID---GKDVPLSK-FKGKVL-LIVNVASRCGLTPSN-YSELSHLYEKYKTQGF-EILAFPCNQFGGQE 156 (197)
Q Consensus 84 ~g~~apdf~l~d~~---G~~v~l~~-~~gk~v-lv~F~a~wC~~C~~~-~~~L~~l~~~~~~~gv-~vv~Is~d~~~~~~ 156 (197)
+|+.+|+|++.+.+ |+.++|++ ++||++ |++|++.|||.|..| ++.+++.+++|++.|+ +|++|+.|
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D------ 74 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN------ 74 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC------
Confidence 48899999999986 99999999 688754 555569999999999 9999999999999999 69999976
Q ss_pred CCCHHHHHHHHHHhcCC--ccceEEecCCcceeE
Q 029204 157 PGSNPEIKEFACTRFKA--EFPIFDKVSQTYFLM 188 (197)
Q Consensus 157 ~~~~~~~~~~~~~~~~~--~fpi~~d~d~~g~~~ 188 (197)
+.+..++|+ +++++ +||++.|.+....+.
T Consensus 75 --~~~~~~~~~-~~~~~~~~f~lLsD~~~~~~~~ 105 (155)
T cd03013 75 --DPFVMKAWG-KALGAKDKIRFLADGNGEFTKA 105 (155)
T ss_pred --CHHHHHHHH-HhhCCCCcEEEEECCCHHHHHH
Confidence 678888898 78887 899999976544433
No 49
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.66 E-value=6.9e-16 Score=109.33 Aligned_cols=81 Identities=21% Similarity=0.311 Sum_probs=65.1
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHc-cCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEec-----
Q 029204 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYK-TQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV----- 181 (197)
Q Consensus 108 gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~-~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d~----- 181 (197)
||+++|+||++||++|+.+++.|++++++|+ +.+++||+|+.| ++.+++++++ ++++.+++.+...
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 72 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLD-------EDEEEWKKFL-KKNNFPWYNVPFDDDNNS 72 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-S-------SSHHHHHHHH-HTCTTSSEEEETTTHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeC-------CCHHHHHHHH-HhcCCCceEEeeCcchHH
Confidence 7999999999999999999999999999999 556999999998 5788999999 7766676665433
Q ss_pred ------CCccee-EEEEcCCCC
Q 029204 182 ------SQTYFL-MLIIHVEGR 196 (197)
Q Consensus 182 ------d~~g~~-~~ii~~~G~ 196 (197)
++.+.+ .+|+|.+|+
T Consensus 73 ~l~~~~~i~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 73 ELLKKYGINGIPTLVLLDPDGK 94 (95)
T ss_dssp HHHHHTT-TSSSEEEEEETTSB
T ss_pred HHHHHCCCCcCCEEEEECCCCC
Confidence 344444 449999996
No 50
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.64 E-value=6.1e-16 Score=123.15 Aligned_cols=106 Identities=18% Similarity=0.184 Sum_probs=79.8
Q ss_pred hccccccceEEEc----------CCCCeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEE------EE
Q 029204 83 ATEKSLYDFTVKD----------IDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEI------LA 146 (197)
Q Consensus 83 ~~g~~apdf~l~d----------~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~v------v~ 146 (197)
..|+..|...+.| ++.+.++..+++||+.||+|||+||++|+.+.|.|.++ +++|+.+ ++
T Consensus 24 ~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~t~~ 99 (184)
T TIGR01626 24 QVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KAAKFPPVKYQTTTI 99 (184)
T ss_pred hcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HHcCCCcccccceEE
Confidence 4566666665554 34567888899999999999999999999999999999 5567999 99
Q ss_pred EeCCCCCCCCCCCHHHHHHHHHHhcCCccc---eEEecCCc--------ce-eE-EEEcCCCC
Q 029204 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFP---IFDKVSQT--------YF-LM-LIIHVEGR 196 (197)
Q Consensus 147 Is~d~~~~~~~~~~~~~~~~~~~~~~~~fp---i~~d~d~~--------g~-~~-~ii~~~G~ 196 (197)
|+.|+ ...+...-++.|+ ++.+..|| ++.|.+.. +. .. ||||++|+
T Consensus 100 IN~dd---~~~~~~~fVk~fi-e~~~~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~Gk 158 (184)
T TIGR01626 100 INADD---AIVGTGMFVKSSA-KKGKKENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGK 158 (184)
T ss_pred EECcc---chhhHHHHHHHHH-HHhcccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCc
Confidence 99873 1112334466677 77788999 88876533 22 55 79999997
No 51
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=4.2e-15 Score=117.82 Aligned_cols=106 Identities=21% Similarity=0.345 Sum_probs=88.4
Q ss_pred hccccccceEEEcC-CCC---eEecCccCCcEEEEEEe-cCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCC
Q 029204 83 ATEKSLYDFTVKDI-DGK---DVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEP 157 (197)
Q Consensus 83 ~~g~~apdf~l~d~-~G~---~v~l~~~~gk~vlv~F~-a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~ 157 (197)
.+|+.+|+|++... .|+ +++++++.||++|++|| ++..++|..|+-.++++|++|+++|++||+||+|
T Consensus 4 lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~D------- 76 (194)
T COG0450 4 LIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTD------- 76 (194)
T ss_pred ccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecC-------
Confidence 48999999999988 775 89999988899888887 9999999999999999999999999999999997
Q ss_pred CCHHHHHHHHH---HhcC---CccceEEecCCcceeEE---------------EEcCCCC
Q 029204 158 GSNPEIKEFAC---TRFK---AEFPIFDKVSQTYFLML---------------IIHVEGR 196 (197)
Q Consensus 158 ~~~~~~~~~~~---~~~~---~~fpi~~d~d~~g~~~~---------------ii~~~G~ 196 (197)
+.....+|.. +..| ++||++.|.+.+..+.| |||.+|+
T Consensus 77 -s~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ 135 (194)
T COG0450 77 -SVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGV 135 (194)
T ss_pred -cHHHHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCe
Confidence 4555555543 3556 78999999876655444 7777774
No 52
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.57 E-value=6.6e-15 Score=116.78 Aligned_cols=58 Identities=19% Similarity=0.453 Sum_probs=51.7
Q ss_pred ccccccceEEEcCCCCeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 84 ~g~~apdf~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
.+...|+|++. +|+.+++++|+ ||+||++|||+|+.++|.|++++++| |++|++|+.|
T Consensus 51 ~~~~~~~f~l~--dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D 108 (181)
T PRK13728 51 EKPAPRWFRLS--NGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLD 108 (181)
T ss_pred CCCCCCccCCC--CCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeC
Confidence 44466788875 99999999998 77899999999999999999999998 5999999987
No 53
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.56 E-value=4.1e-14 Score=111.91 Aligned_cols=90 Identities=27% Similarity=0.487 Sum_probs=76.7
Q ss_pred ccccccceEEEcCCCCeEecCccCCcEEEEEEecCCCC-CcHHHHHHHHHHHHHHccC--CcEEEEEeCCCCCCCCCCCH
Q 029204 84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG-LTPSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSN 160 (197)
Q Consensus 84 ~g~~apdf~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~-~C~~~~~~L~~l~~~~~~~--gv~vv~Is~d~~~~~~~~~~ 160 (197)
.....++|++.|.+|+.+++++++||++||+|..+.|| .|...+..|+++++++.++ .+++|.|++| ++.|++
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD----P~~DTp 103 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD----PERDTP 103 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS----TTTC-H
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC----CCCCCH
Confidence 55678899999999999999999999999999999998 7999999999999998864 5999999998 677999
Q ss_pred HHHHHHHHHhcCCccceE
Q 029204 161 PEIKEFACTRFKAEFPIF 178 (197)
Q Consensus 161 ~~~~~~~~~~~~~~fpi~ 178 (197)
+.+++|+ ++++..|.-+
T Consensus 104 ~~L~~Y~-~~~~~~~~~l 120 (174)
T PF02630_consen 104 EVLKKYA-KKFGPDFIGL 120 (174)
T ss_dssp HHHHHHH-HCHTTTCEEE
T ss_pred HHHHHHH-HhcCCCccee
Confidence 9999998 6776655433
No 54
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=4.8e-13 Score=103.51 Aligned_cols=94 Identities=22% Similarity=0.398 Sum_probs=83.1
Q ss_pred chhccccccceEEEcCCCCeEecCccCCc-EEEEEEe-cCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCC
Q 029204 81 TAATEKSLYDFTVKDIDGKDVPLSKFKGK-VLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG 158 (197)
Q Consensus 81 ~~~~g~~apdf~l~d~~G~~v~l~~~~gk-~vlv~F~-a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~ 158 (197)
....|+.+|||+|+|.||+.++|.++.|+ +||++|| +...|.|.++...+.+-|+++++.|.+|+|++-|
T Consensus 62 ~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D-------- 133 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGD-------- 133 (211)
T ss_pred eeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccC--------
Confidence 45799999999999999999999999885 8888877 7788999999999999999999999999999976
Q ss_pred CHHHHHHHHHHhcCCccceEEecCC
Q 029204 159 SNPEIKEFACTRFKAEFPIFDKVSQ 183 (197)
Q Consensus 159 ~~~~~~~~~~~~~~~~fpi~~d~d~ 183 (197)
+....+.|. .+++++|-++.|+..
T Consensus 134 ~s~sqKaF~-sKqnlPYhLLSDpk~ 157 (211)
T KOG0855|consen 134 DSASQKAFA-SKQNLPYHLLSDPKN 157 (211)
T ss_pred chHHHHHhh-hhccCCeeeecCcch
Confidence 455567787 888999999999754
No 55
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.43 E-value=4.6e-13 Score=96.86 Aligned_cols=62 Identities=19% Similarity=0.256 Sum_probs=49.2
Q ss_pred ccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cce
Q 029204 105 KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPI 177 (197)
Q Consensus 105 ~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi 177 (197)
+.+||+|||+||++||++|+.+.|.|++++++| .++.++.|+.|. .++..+++ +++++. +|.
T Consensus 12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~--------~~~~~~l~-~~~~V~~~Pt 74 (103)
T cd02985 12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDE--------NDSTMELC-RREKIIEVPH 74 (103)
T ss_pred HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCC--------ChHHHHHH-HHcCCCcCCE
Confidence 456899999999999999999999999999999 358999998762 23344565 666665 553
No 56
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.33 E-value=5.4e-12 Score=97.89 Aligned_cols=47 Identities=17% Similarity=0.374 Sum_probs=40.3
Q ss_pred CCeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCC
Q 029204 98 GKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQ 151 (197)
Q Consensus 98 G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~ 151 (197)
|+.+.++++ .||+||++||++|+.++|.|++++++| |++|++|+.|+
T Consensus 44 G~~~~l~~~----~lvnFWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~ 90 (153)
T TIGR02738 44 GRHANQDDY----ALVFFYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDG 90 (153)
T ss_pred chhhhcCCC----EEEEEECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCC
Confidence 666665544 499999999999999999999999998 48899999874
No 57
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.29 E-value=1.4e-11 Score=94.94 Aligned_cols=98 Identities=19% Similarity=0.296 Sum_probs=79.4
Q ss_pred eEEEcCCCCeEecC-ccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCC--cEEEEEeCCCCCCCCCCCHHHHHHHH
Q 029204 91 FTVKDIDGKDVPLS-KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFA 167 (197)
Q Consensus 91 f~l~d~~G~~v~l~-~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~g--v~vv~Is~d~~~~~~~~~~~~~~~~~ 167 (197)
..+.+.+|..+... .++||+|.++|-|.|||+|+.-.|.|.++|++.++.+ ++||.||.| .+.+++.+|+
T Consensus 15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D-------~~~~~~~~y~ 87 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSD-------RDEESLDEYM 87 (157)
T ss_pred CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecC-------CCHHHHHHHH
Confidence 56778888888776 5899999999999999999999999999999998764 999999998 6888999998
Q ss_pred HHhcCCccceEEec-----------CCcceeEE-EEcCCCC
Q 029204 168 CTRFKAEFPIFDKV-----------SQTYFLML-IIHVEGR 196 (197)
Q Consensus 168 ~~~~~~~fpi~~d~-----------d~~g~~~~-ii~~~G~ 196 (197)
++++..+.++... ++++.+.. +++.+|.
T Consensus 88 -~~~~~~W~~iPf~d~~~~~l~~ky~v~~iP~l~i~~~dG~ 127 (157)
T KOG2501|consen 88 -LEHHGDWLAIPFGDDLIQKLSEKYEVKGIPALVILKPDGT 127 (157)
T ss_pred -HhcCCCeEEecCCCHHHHHHHHhcccCcCceeEEecCCCC
Confidence 6666666666433 45555554 6667763
No 58
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.28 E-value=6.4e-12 Score=96.22 Aligned_cols=83 Identities=16% Similarity=0.263 Sum_probs=58.8
Q ss_pred EEcCCCCeEecCc--cCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHh
Q 029204 93 VKDIDGKDVPLSK--FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTR 170 (197)
Q Consensus 93 l~d~~G~~v~l~~--~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~ 170 (197)
+++.+++...+++ .+||++||+||++||++|+.+.|.+.+++++|+++ +.|+.|++|. + +..+.+ ++
T Consensus 3 ~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~v~v~vd~------~---~~~~~~-~~ 71 (142)
T cd02950 3 LEQLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ-VNFVMLNVDN------P---KWLPEI-DR 71 (142)
T ss_pred hHHHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC-eeEEEEEcCC------c---ccHHHH-HH
Confidence 4455555555554 47899999999999999999999999999999865 8999998762 1 112344 56
Q ss_pred cCCc-cceEEecCCcce
Q 029204 171 FKAE-FPIFDKVSQTYF 186 (197)
Q Consensus 171 ~~~~-fpi~~d~d~~g~ 186 (197)
|++. +|.+.-.+-+|.
T Consensus 72 ~~V~~iPt~v~~~~~G~ 88 (142)
T cd02950 72 YRVDGIPHFVFLDREGN 88 (142)
T ss_pred cCCCCCCEEEEECCCCC
Confidence 6664 665444433343
No 59
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.22 E-value=3.6e-11 Score=86.61 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=40.1
Q ss_pred CccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 104 ~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
.+++||++||+||++||++|+.+.|.+++++++|+ ++.++.|..+
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~ 58 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP--QIRHLAIEES 58 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc--cCceEEEECC
Confidence 35799999999999999999999999999999996 4888888654
No 60
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.22 E-value=1.1e-10 Score=94.93 Aligned_cols=74 Identities=27% Similarity=0.478 Sum_probs=69.4
Q ss_pred ceEEEcCCCCeEecCccCCcEEEEEEecCCCC-CcHHHHHHHHHHHHHHc---cCCcEEEEEeCCCCCCCCCCCHHHHHH
Q 029204 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG-LTPSNYSELSHLYEKYK---TQGFEILAFPCNQFGGQEPGSNPEIKE 165 (197)
Q Consensus 90 df~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~-~C~~~~~~L~~l~~~~~---~~gv~vv~Is~d~~~~~~~~~~~~~~~ 165 (197)
+|++.|.+|+.+++.+++||++||+|..++|| .|..++.+|.++.++.. ...++++.|++| +|.|+++.+++
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvD----PerDtp~~lk~ 124 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVD----PERDTPEVLKK 124 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEEC----CCCCCHHHHHH
Confidence 89999999999999999999999999999999 79999999999999988 334899999998 78899999999
Q ss_pred HH
Q 029204 166 FA 167 (197)
Q Consensus 166 ~~ 167 (197)
|+
T Consensus 125 Y~ 126 (207)
T COG1999 125 YA 126 (207)
T ss_pred Hh
Confidence 98
No 61
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.9e-11 Score=92.49 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=39.9
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
.++||||+|||.||++|+...|.|+++.++|.++ +++.-|++|
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~-~k~~kvdtD 102 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK-FKLYKVDTD 102 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe-EEEEEEccc
Confidence 3569999999999999999999999999999776 999999887
No 62
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.20 E-value=5.9e-11 Score=85.55 Aligned_cols=44 Identities=7% Similarity=0.091 Sum_probs=39.9
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
+|+++||+||++||++|+.+.|.+.+++++|++..+.++.|+.|
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d 59 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD 59 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC
Confidence 57899999999999999999999999999998766888888765
No 63
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.20 E-value=4.8e-11 Score=88.08 Aligned_cols=43 Identities=14% Similarity=-0.009 Sum_probs=39.6
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
.++++||+|||+|||+|+...|.|.++.++|.+. +.++-|+.|
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD 55 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDID 55 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECC
Confidence 4679999999999999999999999999999876 889999887
No 64
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.8e-11 Score=95.58 Aligned_cols=112 Identities=13% Similarity=0.308 Sum_probs=90.9
Q ss_pred hhccccccceEEEcCCCCeEecCccCCc--EEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCC
Q 029204 82 AATEKSLYDFTVKDIDGKDVPLSKFKGK--VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (197)
Q Consensus 82 ~~~g~~apdf~l~d~~G~~v~l~~~~gk--~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~ 159 (197)
...|+.+|+|+.....|+ +.+.||.|. .||..-.+++.|+|..|+.++.++..||.++|+..|++++|++..++ ++
T Consensus 6 l~lgd~~PNfea~Tt~g~-i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH~-~W 83 (224)
T KOG0854|consen 6 LRLGDTVPNFEADTTVGK-IKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESHK-DW 83 (224)
T ss_pred ccccCcCCCccccccccc-eehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHHH-HH
Confidence 358999999999888887 888998775 45555579999999999999999999999999999999999876554 67
Q ss_pred HHHHHHHHHHhcC--CccceEEecCCcceeEE-EEcCCCC
Q 029204 160 NPEIKEFACTRFK--AEFPIFDKVSQTYFLML-IIHVEGR 196 (197)
Q Consensus 160 ~~~~~~~~~~~~~--~~fpi~~d~d~~g~~~~-ii~~~G~ 196 (197)
.++++.|. +... ++|||+.|...+....+ ++|.+++
T Consensus 84 i~DIks~~-~~~~~~~~yPIIaD~~rela~~l~MlD~~e~ 122 (224)
T KOG0854|consen 84 IKDIKSYA-KVKNHSVPYPIIADPNRELAFLLNMLDPEEK 122 (224)
T ss_pred HHHHHHHH-hccCCCCCCCeecCCchhhhhhhcccCHhHc
Confidence 77888887 4444 89999999877755444 5665544
No 65
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=99.17 E-value=3.5e-10 Score=93.20 Aligned_cols=78 Identities=26% Similarity=0.388 Sum_probs=69.8
Q ss_pred cceEEEcCCCCeEecCccCCcEEEEEEecCCCC-CcHHHHHHHHHHHHHHccC-C--cEEEEEeCCCCCCCCCCCHHHHH
Q 029204 89 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG-LTPSNYSELSHLYEKYKTQ-G--FEILAFPCNQFGGQEPGSNPEIK 164 (197)
Q Consensus 89 pdf~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~-~C~~~~~~L~~l~~~~~~~-g--v~vv~Is~d~~~~~~~~~~~~~~ 164 (197)
-.|+|.|.+|+.++-.|+.||++||+|-.++|| .|..|+..|.+..++.+++ | +.-|.|++| +|.|+.+.++
T Consensus 120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvD----PeRD~~~~~~ 195 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVD----PERDSVEVVA 195 (280)
T ss_pred CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeC----cccCCHHHHH
Confidence 589999999999999999999999999999999 7999999999999988766 3 346889988 6889999999
Q ss_pred HHHHHhc
Q 029204 165 EFACTRF 171 (197)
Q Consensus 165 ~~~~~~~ 171 (197)
+|+ ++|
T Consensus 196 eY~-~eF 201 (280)
T KOG2792|consen 196 EYV-SEF 201 (280)
T ss_pred HHH-Hhc
Confidence 998 665
No 66
>PHA02278 thioredoxin-like protein
Probab=99.13 E-value=1.9e-10 Score=83.57 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=38.2
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
+++++||+|||+||++|+...|.|.++.+++..+ +.++.|++|
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~-~~~~~vdvd 55 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK-KPILTLNLD 55 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC-ceEEEEECC
Confidence 5789999999999999999999999999886543 788989887
No 67
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.13 E-value=1.5e-10 Score=82.96 Aligned_cols=60 Identities=12% Similarity=0.248 Sum_probs=48.3
Q ss_pred cCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceE
Q 029204 106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIF 178 (197)
Q Consensus 106 ~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~ 178 (197)
.+++++||+||++||++|+.+.|.+.++.++|++. +.+..|++|. . .+.+ +++++. +|.+
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~~-------~----~~~~-~~~~v~~~Pt~ 76 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCGD-------D----RMLC-RSQGVNSYPSL 76 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCCc-------c----HHHH-HHcCCCccCEE
Confidence 35689999999999999999999999999999875 8999999872 2 2233 566664 7755
No 68
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.11 E-value=2.8e-10 Score=83.35 Aligned_cols=46 Identities=15% Similarity=0.058 Sum_probs=41.9
Q ss_pred ccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 105 KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 105 ~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
+.+|+++||+||++||++|+...|.+.++.+++++.++.++.|++|
T Consensus 21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d 66 (111)
T cd02963 21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG 66 (111)
T ss_pred ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc
Confidence 3468999999999999999999999999999998767999999876
No 69
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.10 E-value=4.3e-10 Score=83.02 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=39.6
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
+++++||+|||+||++|+...|.+.++.++|++. +.++.|++|
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d 70 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCW 70 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECC
Confidence 4579999999999999999999999999999875 899999886
No 70
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=3.2e-10 Score=82.74 Aligned_cols=59 Identities=24% Similarity=0.413 Sum_probs=48.1
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEE
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFD 179 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~ 179 (197)
.+|++||+|+|+|||+|+...|.+.+|..+|.+ +.++.|++| + +.+.+ +++++. .|.+.
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvd-------e----~~~~~-~~~~V~~~PTf~ 79 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVD-------E----LEEVA-KEFNVKAMPTFV 79 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecc-------c----CHhHH-HhcCceEeeEEE
Confidence 368999999999999999999999999999987 999999987 2 45555 555664 55443
No 71
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.05 E-value=7.7e-10 Score=78.21 Aligned_cols=43 Identities=21% Similarity=0.270 Sum_probs=39.5
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
+|+++||+||++||++|+.+.+.+++++++|.+. +.++.|+++
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~ 53 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ-FVLAKVNCD 53 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc-EEEEEEecc
Confidence 5789999999999999999999999999999764 888999876
No 72
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.05 E-value=9.1e-10 Score=80.19 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=41.3
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
+||++||.||++||++|+...|.+.+++++|+++++.++.|++|
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d 63 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNAD 63 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECC
Confidence 57899999999999999999999999999999878999999887
No 73
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.04 E-value=7.5e-10 Score=85.81 Aligned_cols=44 Identities=11% Similarity=0.042 Sum_probs=41.0
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
+++++||+||++||++|+.+.|.++++.++|++.++.++.|++|
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd 89 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIG 89 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECC
Confidence 46799999999999999999999999999998777999999987
No 74
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.03 E-value=1.1e-09 Score=78.69 Aligned_cols=66 Identities=20% Similarity=0.254 Sum_probs=49.0
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHH---HHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEEec
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFDKV 181 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L---~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~d~ 181 (197)
+||++||+||++||++|+...+.+ .++.+.+++ ++.++.|+.+. ..+...+++ +++++. +|.+.-.
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~~~~~~~~-~~~~i~~~Pti~~~ 79 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTK-------NDPEITALL-KRFGVFGPPTYLFY 79 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCC-------CCHHHHHHH-HHcCCCCCCEEEEE
Confidence 578999999999999999999887 678888876 69999998752 222234555 676765 6654433
No 75
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.7e-09 Score=84.51 Aligned_cols=98 Identities=16% Similarity=0.196 Sum_probs=76.7
Q ss_pred ccccccceEEEcC-C--CCeEecCccCCcEEEEEEe-cCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCC
Q 029204 84 TEKSLYDFTVKDI-D--GKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (197)
Q Consensus 84 ~g~~apdf~l~d~-~--G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~ 159 (197)
....+|+|.-... + -++++|.+|+||+|+++|| ..+.-+|..|+-.+.+.+++|++.|.+||++++| +
T Consensus 6 ~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~D--------S 77 (196)
T KOG0852|consen 6 VFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTD--------S 77 (196)
T ss_pred cCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEecc--------c
Confidence 3445588875543 4 4589999999999999998 7888999999999999999999999999999987 5
Q ss_pred HHHHHHHHH---HhcCC---ccceEEecCCcceeEE
Q 029204 160 NPEIKEFAC---TRFKA---EFPIFDKVSQTYFLML 189 (197)
Q Consensus 160 ~~~~~~~~~---~~~~~---~fpi~~d~d~~g~~~~ 189 (197)
.....+|+. ++-|+ ++|++.|......+-|
T Consensus 78 ~fshlAW~ntprk~gGlg~~~iPllsD~~~~Isrdy 113 (196)
T KOG0852|consen 78 VFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISRDY 113 (196)
T ss_pred hhhhhhHhcCchhhCCcCccccceeeccchhhHHhc
Confidence 555666653 33344 5999999876655444
No 76
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.00 E-value=2.6e-09 Score=78.68 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=49.2
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEE
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFD 179 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~ 179 (197)
++|+|||.|+++|||+|+..-|.|.++.++|++. +.|+.|+.|. +.++. ++|++. .|.+.
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDe-----------v~dva-~~y~I~amPtfv 73 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDK-----------VPVYT-QYFDISYIPSTI 73 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccc-----------cHHHH-HhcCceeCcEEE
Confidence 6899999999999999999999999999999765 8899998762 34455 666776 66554
No 77
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.99 E-value=8.5e-10 Score=93.09 Aligned_cols=50 Identities=22% Similarity=0.337 Sum_probs=45.2
Q ss_pred CeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCC
Q 029204 99 KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQ 151 (197)
Q Consensus 99 ~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~ 151 (197)
+...+.+++|+++||+||++||++|+.+.|.|++++++| |++|++|++|.
T Consensus 157 ~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~ 206 (271)
T TIGR02740 157 KDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDG 206 (271)
T ss_pred HHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCC
Confidence 346778889999999999999999999999999999998 48999999884
No 78
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.99 E-value=1.4e-09 Score=77.60 Aligned_cols=61 Identities=16% Similarity=0.244 Sum_probs=47.2
Q ss_pred cCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEE
Q 029204 106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFD 179 (197)
Q Consensus 106 ~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~ 179 (197)
.+|+ +||+||++||++|+...|.++++++++++.++.+..|+++. .. ..+ +++++. +|.+.
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-------~~----~~~-~~~~i~~~Pt~~ 76 (101)
T cd02994 15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ-------EP----GLS-GRFFVTALPTIY 76 (101)
T ss_pred hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC-------CH----hHH-HHcCCcccCEEE
Confidence 3565 68999999999999999999999999877679999998762 22 133 566775 77554
No 79
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.96 E-value=2.2e-09 Score=82.22 Aligned_cols=43 Identities=12% Similarity=-0.048 Sum_probs=39.9
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
++++|||+|||+||++|+...|.|.++.++|++. +.|+-|++|
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVD 64 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDIT 64 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECC
Confidence 5689999999999999999999999999999876 888999887
No 80
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.95 E-value=5.5e-09 Score=78.02 Aligned_cols=80 Identities=16% Similarity=0.120 Sum_probs=56.4
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEecCCcce
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVSQTYF 186 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~ 186 (197)
.|+.++|+|+++|||+|+...|.|.++.++. ++.|+-|++|.-...+..+.+++.++. +++++.. ++.+.
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~---~~~~y~vdvd~~~~~~~~~~~~~~~~~-~~~~i~~------~i~~~ 91 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQT---KAPIYYIDSENNGSFEMSSLNDLTAFR-SRFGIPT------SFMGT 91 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhc---CCcEEEEECCCccCcCcccHHHHHHHH-HHcCCcc------cCCCC
Confidence 4678999999999999999999999999982 377888888732222233445778887 7766543 33445
Q ss_pred eEEEEcCCCC
Q 029204 187 LMLIIHVEGR 196 (197)
Q Consensus 187 ~~~ii~~~G~ 196 (197)
|.+++-++|+
T Consensus 92 PT~v~~k~Gk 101 (122)
T TIGR01295 92 PTFVHITDGK 101 (122)
T ss_pred CEEEEEeCCe
Confidence 5555555554
No 81
>PRK09381 trxA thioredoxin; Provisional
Probab=98.95 E-value=1.5e-09 Score=78.67 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=39.7
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
.++++||+||++||++|+...|.++++.++|.++ +.++.|++|
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~-~~~~~vd~~ 62 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNID 62 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC-cEEEEEECC
Confidence 3679999999999999999999999999999875 999999887
No 82
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.94 E-value=5.5e-09 Score=74.95 Aligned_cols=62 Identities=15% Similarity=0.257 Sum_probs=48.0
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEEec
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFDKV 181 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~d~ 181 (197)
.++++||+||++||++|+...|.++++.++|++. +.+..|+++. .. +.+ +++++. +|.+.-.
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~vd~~~--------~~---~~~-~~~~i~~~Pt~~~~ 80 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGK-VKVGSVDCQK--------YE---SLC-QQANIRAYPTIRLY 80 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEECCc--------hH---HHH-HHcCCCcccEEEEE
Confidence 4569999999999999999999999999999654 8999998762 22 233 566765 6754433
No 83
>PRK10996 thioredoxin 2; Provisional
Probab=98.90 E-value=1.9e-09 Score=82.11 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=39.1
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
++|+++|+||++||++|+...+.|+++++++.+. +.++.|+.+
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~-v~~~~vd~~ 93 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK-VRFVKVNTE 93 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC-eEEEEEeCC
Confidence 5789999999999999999999999999998864 899999775
No 84
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.89 E-value=6.4e-09 Score=74.97 Aligned_cols=62 Identities=18% Similarity=0.360 Sum_probs=48.1
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEE
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFD 179 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~ 179 (197)
.|+++||+||++||++|+...|.+.++++++.+. +.++.|++|. +.. .+.+ +++++. +|.+.
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~-~~~~~v~~~~------~~~---~~~~-~~~~i~~~Pt~~ 79 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL-VQVAAVDCDE------DKN---KPLC-GKYGVQGFPTLK 79 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC-ceEEEEecCc------ccc---HHHH-HHcCCCcCCEEE
Confidence 4679999999999999999999999999999764 8999998872 112 2333 566665 67543
No 85
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.87 E-value=3.5e-09 Score=75.27 Aligned_cols=41 Identities=17% Similarity=0.295 Sum_probs=37.1
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHHHHHcc--CCcEEEEEeCC
Q 029204 110 VLLIVNVASRCGLTPSNYSELSHLYEKYKT--QGFEILAFPCN 150 (197)
Q Consensus 110 ~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~--~gv~vv~Is~d 150 (197)
++||+||++||++|+.+.|.++++++++++ ..+.++.|+++
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~ 60 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT 60 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECC
Confidence 599999999999999999999999999986 35888888876
No 86
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.87 E-value=7.6e-09 Score=74.47 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=37.9
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCC--cEEEEEeCC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCN 150 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~g--v~vv~Is~d 150 (197)
+++++||+||++||++|+.+.|.|++++++|++.+ +.+..++++
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~ 59 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT 59 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc
Confidence 45799999999999999999999999999997654 677777765
No 87
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.86 E-value=5.1e-09 Score=75.83 Aligned_cols=61 Identities=15% Similarity=0.317 Sum_probs=46.2
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccC-----CcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEE
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-----GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFD 179 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~-----gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~ 179 (197)
.++++||+||++||++|+...|.++++++++++. .+.+..|++|. . . +.+ +++++. +|.+.
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~-------~-~---~l~-~~~~v~~~Ptl~ 83 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK-------E-S---DIA-DRYRINKYPTLK 83 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC-------C-H---HHH-HhCCCCcCCEEE
Confidence 4579999999999999999999999999887532 37888888762 2 2 233 666775 77553
No 88
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.85 E-value=6.9e-09 Score=77.25 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=40.4
Q ss_pred cCCcEEEEEEec-------CCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCC
Q 029204 106 FKGKVLLIVNVA-------SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQ 151 (197)
Q Consensus 106 ~~gk~vlv~F~a-------~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~ 151 (197)
.+|++++|+||| +|||+|+...|.|+++.++|+++ +.++.|..|+
T Consensus 19 ~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~-v~fv~Vdvd~ 70 (119)
T cd02952 19 HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED-CVFIYCDVGD 70 (119)
T ss_pred cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC-CEEEEEEcCC
Confidence 357899999999 99999999999999999999854 9999998873
No 89
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.84 E-value=5e-09 Score=74.64 Aligned_cols=63 Identities=21% Similarity=0.369 Sum_probs=46.7
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccC-CcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCC-ccceEE
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA-EFPIFD 179 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~-gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~-~fpi~~ 179 (197)
++++++|+||++||++|+...+.++++.+++++. .+.++.|+++. +.. .... +++++ .+|.+.
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~------~~~---~~~~-~~~~i~~~Pt~~ 80 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK------PEH---DALK-EEYNVKGFPTFK 80 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC------Ccc---HHHH-HhCCCccccEEE
Confidence 4679999999999999999999999999999753 37777777652 112 2333 66677 477543
No 90
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.2e-08 Score=85.96 Aligned_cols=43 Identities=23% Similarity=0.402 Sum_probs=40.3
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
+.+||||+||++||++|+..+|.|.++..+|+++ +.+.-|++|
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D 84 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCD 84 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc-eEEEEecCC
Confidence 4569999999999999999999999999999987 999999987
No 91
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.80 E-value=1.1e-08 Score=75.88 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=37.2
Q ss_pred CccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 104 ~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
...+||+|||+||++||++|+.+.+.+.+..+.+.. +..++.|.+|
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd 60 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLE 60 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEec
Confidence 345789999999999999999999999998776543 3566777766
No 92
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.80 E-value=2.2e-08 Score=70.68 Aligned_cols=42 Identities=12% Similarity=0.046 Sum_probs=36.9
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 108 gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
++++||+||++||++|+...+.|+++.+++. .++.++.|+.+
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~-~~i~~~~vd~~ 55 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF-PSVLFLSIEAE 55 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC-CceEEEEEccc
Confidence 6899999999999999999999999999973 35888888654
No 93
>PTZ00051 thioredoxin; Provisional
Probab=98.79 E-value=2.9e-08 Score=70.22 Aligned_cols=42 Identities=10% Similarity=0.191 Sum_probs=37.1
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
.++++||+||++||++|+...+.+.++.+++.+ +.++.|+.+
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~vd~~ 58 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK--MVFVKVDVD 58 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC--cEEEEEECc
Confidence 467999999999999999999999999998753 888888765
No 94
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.79 E-value=2.6e-08 Score=70.87 Aligned_cols=43 Identities=9% Similarity=0.350 Sum_probs=38.9
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
.+|+++|+||++||+.|+...+.+.++.+++.+ ++.++.|+.|
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d 54 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDID 54 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECC
Confidence 568999999999999999999999999999976 4888888876
No 95
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.78 E-value=2.8e-08 Score=73.18 Aligned_cols=62 Identities=16% Similarity=0.254 Sum_probs=46.1
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHccC-C-cEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEE
Q 029204 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-G-FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFD 179 (197)
Q Consensus 108 gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~-g-v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~ 179 (197)
++++||+||++||++|+.+.+.++++.++|++. + +.+..|+++. +. ..+.+ +++++. +|.+.
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~------~~---~~~~~-~~~~i~~~Pt~~ 83 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCAD------EE---NVALC-RDFGVTGYPTLR 83 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccc------hh---hHHHH-HhCCCCCCCEEE
Confidence 479999999999999999999999999998753 2 7777777641 11 23344 666776 77543
No 96
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.78 E-value=2.3e-08 Score=73.26 Aligned_cols=41 Identities=15% Similarity=0.112 Sum_probs=37.0
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 108 gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
++++||+||++||++|+...|.|+++.++|.+ +.++-|+.+
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~--v~f~~vd~~ 64 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE--TKFVKINAE 64 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--cEEEEEEch
Confidence 57999999999999999999999999999963 888888765
No 97
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.77 E-value=2.5e-08 Score=89.72 Aligned_cols=44 Identities=20% Similarity=0.322 Sum_probs=41.4
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
+++++||+||++||++|+.+.|.++++.++|+++++.|+.|++|
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD 413 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRAD 413 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECC
Confidence 67899999999999999999999999999998888999999887
No 98
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.77 E-value=2.5e-08 Score=74.02 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=36.5
Q ss_pred CC-cEEEEEEecCCCCCcHHHHHHHH---HHHHHHccCCcEEEEEeCC
Q 029204 107 KG-KVLLIVNVASRCGLTPSNYSELS---HLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 107 ~g-k~vlv~F~a~wC~~C~~~~~~L~---~l~~~~~~~gv~vv~Is~d 150 (197)
+| |++||+||++||++|+.+.+.+. ++.+.+++ ++.++.|+.|
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d 58 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINID 58 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEcc
Confidence 67 89999999999999999998875 56666764 5889999876
No 99
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.75 E-value=2.6e-08 Score=70.80 Aligned_cols=44 Identities=23% Similarity=0.216 Sum_probs=38.9
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHcc-CCcEEEEEeCC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT-QGFEILAFPCN 150 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~-~gv~vv~Is~d 150 (197)
.+++++|+||++||++|+.+.+.+.++.+++++ ..+.+..|+++
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence 357999999999999999999999999999987 35888888765
No 100
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.75 E-value=2.4e-08 Score=70.64 Aligned_cols=61 Identities=23% Similarity=0.360 Sum_probs=47.7
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCC-cEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEE
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG-FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFD 179 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~g-v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~ 179 (197)
++++++|.||++||+.|+...+.++++.+++++.+ +.++.+.++. . .+.. +++++. +|.+.
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--------~---~~~~-~~~~i~~~P~~~ 74 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA--------E---KDLA-SRFGVSGFPTIK 74 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc--------h---HHHH-HhCCCCcCCEEE
Confidence 68899999999999999999999999999998764 8888887651 1 2333 666775 77553
No 101
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.3e-07 Score=72.28 Aligned_cols=89 Identities=18% Similarity=0.172 Sum_probs=76.0
Q ss_pred hhccccccceEEEcCCCCeEecCccCCcE-EEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCH
Q 029204 82 AATEKSLYDFTVKDIDGKDVPLSKFKGKV-LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 160 (197)
Q Consensus 82 ~~~g~~apdf~l~d~~G~~v~l~~~~gk~-vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~ 160 (197)
..+|+.+|||++.+.+.+++++.++.||. +|..|..-..|.|..+...+++...++.+ +.|+.||.| -+
T Consensus 18 ~~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~--~~Vl~IS~D--------LP 87 (158)
T COG2077 18 PQVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN--TVVLCISMD--------LP 87 (158)
T ss_pred CccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC--cEEEEEeCC--------Ch
Confidence 47999999999999999999999999985 66666788999999999999999999876 899999986 67
Q ss_pred HHHHHHHHHhcCCc-cceEEec
Q 029204 161 PEIKEFACTRFKAE-FPIFDKV 181 (197)
Q Consensus 161 ~~~~~~~~~~~~~~-fpi~~d~ 181 (197)
...++|+ ...|++ .-++.|.
T Consensus 88 FAq~RfC-~aeGi~nv~~lSd~ 108 (158)
T COG2077 88 FAQKRFC-GAEGIENVITLSDF 108 (158)
T ss_pred hHHhhhh-hhcCcccceEhhhh
Confidence 7888898 555776 5556654
No 102
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.72 E-value=4.7e-08 Score=69.13 Aligned_cols=60 Identities=18% Similarity=0.350 Sum_probs=49.3
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEE
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFD 179 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~ 179 (197)
.++++||+||++||+.|+...|.+.++.+++++ ++.++.|+++. . .+.+ +++++. +|.+.
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~-------~----~~l~-~~~~v~~~Pt~~ 76 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDE-------N----KELC-KKYGVKSVPTII 76 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT-------S----HHHH-HHTTCSSSSEEE
T ss_pred cCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhc-------c----chhh-hccCCCCCCEEE
Confidence 368999999999999999999999999999998 69999998762 2 3344 666776 77554
No 103
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.71 E-value=7.2e-08 Score=68.54 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=37.9
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 108 gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
++++||+||++||++|+...+.+.++.+++.++ +.++.++++
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~id~~ 59 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI-VKVGAVDAD 59 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-ceEEEEECc
Confidence 467999999999999999999999999999764 899999875
No 104
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.70 E-value=9.1e-08 Score=70.38 Aligned_cols=42 Identities=7% Similarity=-0.099 Sum_probs=38.0
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
+++++||+||++||++|+...|.|.++.++|.+ +.++-|+.+
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~--i~f~~Vd~~ 62 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE--TKFIKVNAE 62 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC--CEEEEEEcc
Confidence 457999999999999999999999999999864 899999876
No 105
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.63 E-value=8.8e-08 Score=78.71 Aligned_cols=61 Identities=15% Similarity=0.205 Sum_probs=47.1
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEEec
Q 029204 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFDKV 181 (197)
Q Consensus 108 gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~d~ 181 (197)
+++++|+||++||++|+...|.+++++++|++. +.+..|+++. . .+.. ++|++. +|.+.-.
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~-v~~~~VD~~~--------~---~~l~-~~~~I~~~PTl~~f 113 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ-VNVADLDATR--------A---LNLA-KRFAIKGYPTLLLF 113 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC-eEEEEecCcc--------c---HHHH-HHcCCCcCCEEEEE
Confidence 579999999999999999999999999999865 7777776651 1 2233 677775 7755433
No 106
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.62 E-value=1.4e-07 Score=66.27 Aligned_cols=42 Identities=19% Similarity=0.273 Sum_probs=38.3
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 108 gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
+++++|+||++||+.|+...+.|+++.+++.++ +.++.|.++
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~vd~~ 55 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK-VKFVKLNVD 55 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC-eEEEEEECC
Confidence 569999999999999999999999999999754 999999876
No 107
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.62 E-value=1.2e-07 Score=69.68 Aligned_cols=43 Identities=12% Similarity=0.091 Sum_probs=39.5
Q ss_pred CCcEEEEEEecCC--CCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 107 KGKVLLIVNVASR--CGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 107 ~gk~vlv~F~a~w--C~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
.|.++||+||++| ||.|....|.|.++.++|.++ +.++-|+.|
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid 70 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRA 70 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECC
Confidence 5679999999997 999999999999999999876 889999877
No 108
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.61 E-value=1.1e-07 Score=67.53 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=38.6
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHcc-CCcEEEEEeCC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT-QGFEILAFPCN 150 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~-~gv~vv~Is~d 150 (197)
.+|++||.||++||++|+...+.+.++.++++. .++.++.|+++
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDAD 61 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECC
Confidence 356999999999999999999999999999983 35888888876
No 109
>PLN02309 5'-adenylylsulfate reductase
Probab=98.61 E-value=1.6e-07 Score=84.38 Aligned_cols=65 Identities=22% Similarity=0.327 Sum_probs=50.8
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEEec
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFDKV 181 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~d~ 181 (197)
++|++||+||++||++|+.+.|.+.++.++|.+.++.|+.|++|. ... +.+.+++++. ||.+.-.
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~-------~~~---~la~~~~~I~~~PTil~f 429 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADG-------DQK---EFAKQELQLGSFPTILLF 429 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCC-------cch---HHHHhhCCCceeeEEEEE
Confidence 578999999999999999999999999999988889999998761 111 2332346665 7865443
No 110
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.59 E-value=2.4e-07 Score=68.07 Aligned_cols=42 Identities=12% Similarity=0.161 Sum_probs=36.2
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
+++.++|+||++||++|+...+.|+++.+++ + .++++.|+.|
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~-~i~~~~vd~d 62 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D-KLKLEIYDFD 62 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C-ceEEEEEeCC
Confidence 3457899999999999999999999999887 3 3889999876
No 111
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.54 E-value=2.4e-07 Score=73.40 Aligned_cols=41 Identities=10% Similarity=0.047 Sum_probs=37.1
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 108 gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
+++|||+||++||++|+...+.|.++.++|.. +.++-|+.+
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~--vkF~kVd~d 123 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA--VKFCKIRAS 123 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC--eEEEEEecc
Confidence 35999999999999999999999999999963 899999875
No 112
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.53 E-value=2.9e-07 Score=68.61 Aligned_cols=42 Identities=7% Similarity=-0.016 Sum_probs=36.1
Q ss_pred cEEEEEEecCCCCC--cH--HHHHHHHHHHHHHc-cCCcEEEEEeCC
Q 029204 109 KVLLIVNVASRCGL--TP--SNYSELSHLYEKYK-TQGFEILAFPCN 150 (197)
Q Consensus 109 k~vlv~F~a~wC~~--C~--~~~~~L~~l~~~~~-~~gv~vv~Is~d 150 (197)
+++|++||+.||++ |+ ...|.|.++..++- +.++.|+.|++|
T Consensus 28 ~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d 74 (120)
T cd03065 28 VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSK 74 (120)
T ss_pred ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCC
Confidence 49999999999998 99 77889999999982 335999999987
No 113
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.52 E-value=5.9e-07 Score=62.57 Aligned_cols=61 Identities=16% Similarity=0.331 Sum_probs=47.4
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHc-cCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEE
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYK-TQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFD 179 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~-~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~ 179 (197)
+++++||+||++||++|+...+.+.++.+.++ +.++.++.|+++. ..+.. +++++. +|.+.
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~-~~~~i~~~Pt~~ 76 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-----------NNDLC-SEYGVRGYPTIK 76 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-----------hHHHH-HhCCCCCCCEEE
Confidence 45699999999999999999999999999995 4459999998761 23344 666765 67543
No 114
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.50 E-value=3.6e-07 Score=84.57 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=47.9
Q ss_pred CccCCcEEEEEEecCCCCCcHHHHHHH---HHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEE
Q 029204 104 SKFKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFD 179 (197)
Q Consensus 104 ~~~~gk~vlv~F~a~wC~~C~~~~~~L---~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~ 179 (197)
.+.+||+|+|+||++||++|+.+.+.. .++.++++ ++.++.|+.++ +.++.++++ ++|++. +|.+.
T Consensus 470 a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~-------~~~~~~~l~-~~~~v~g~Pt~~ 539 (571)
T PRK00293 470 AKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTA-------NNAEDVALL-KHYNVLGLPTIL 539 (571)
T ss_pred HHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCC-------CChhhHHHH-HHcCCCCCCEEE
Confidence 335689999999999999999877764 66777775 48888888762 233445555 666664 55443
Q ss_pred ecC
Q 029204 180 KVS 182 (197)
Q Consensus 180 d~d 182 (197)
-.|
T Consensus 540 ~~~ 542 (571)
T PRK00293 540 FFD 542 (571)
T ss_pred EEC
Confidence 333
No 115
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2e-07 Score=76.89 Aligned_cols=63 Identities=29% Similarity=0.362 Sum_probs=49.5
Q ss_pred ecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceE
Q 029204 102 PLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIF 178 (197)
Q Consensus 102 ~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~ 178 (197)
+|+.-.+|.|+|+|+|+||++|++..|.+.++..+|. |..++-|.+| +.+.-+ ..+|++ +|.+
T Consensus 15 ~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp--~aVFlkVdVd-----------~c~~ta-a~~gV~amPTF 78 (288)
T KOG0908|consen 15 ELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP--GAVFLKVDVD-----------ECRGTA-ATNGVNAMPTF 78 (288)
T ss_pred hhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc--ccEEEEEeHH-----------Hhhchh-hhcCcccCceE
Confidence 3444567999999999999999999999999999995 4788888654 455555 556775 6644
No 116
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.43 E-value=6e-07 Score=64.93 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=32.8
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHH---HHHHccCCcEEEEEeCC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHL---YEKYKTQGFEILAFPCN 150 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l---~~~~~~~gv~vv~Is~d 150 (197)
+||++||+||.+|||+|+...+++.+. ..++++ ++.++.++.+
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 49 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNID 49 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecC
Confidence 578999999999999999888888754 344443 4899999876
No 117
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.43 E-value=1.1e-06 Score=72.38 Aligned_cols=117 Identities=15% Similarity=0.226 Sum_probs=84.6
Q ss_pred ccccchhccccccceEEEcCCCCe-EecCcc-C-CcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeC----
Q 029204 77 GVHATAATEKSLYDFTVKDIDGKD-VPLSKF-K-GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC---- 149 (197)
Q Consensus 77 ~~~~~~~~g~~apdf~l~d~~G~~-v~l~~~-~-gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~---- 149 (197)
.....+..|..|||..+...+|+. ..+-|| + ++|+||+|-.-.||+-...+.+++++.++|.+. ++++.|-+
T Consensus 68 dl~~~a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAH 146 (237)
T PF00837_consen 68 DLFKEAKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAH 146 (237)
T ss_pred HcccceeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhHhhhC
Confidence 344566799999999999999998 899998 4 579999999888999999999999999999986 66666633
Q ss_pred --CC-------CCCCCCCCHHH---HHHHHHHhcCCccceEEecCCcce---------eEEEEcCCCC
Q 029204 150 --NQ-------FGGQEPGSNPE---IKEFACTRFKAEFPIFDKVSQTYF---------LMLIIHVEGR 196 (197)
Q Consensus 150 --d~-------~~~~~~~~~~~---~~~~~~~~~~~~fpi~~d~d~~g~---------~~~ii~~~G~ 196 (197)
|. ..-+.+.+.+| +.+.+ ++....+|++.|.=-|.. +.|||+ +||
T Consensus 147 psDgW~~~~~~~~i~qh~sledR~~aA~~l-~~~~~~~pi~vD~mdN~~~~~YgA~PeRlyIi~-~gk 212 (237)
T PF00837_consen 147 PSDGWAFGNNPYEIPQHRSLEDRLRAAKLL-KEEFPQCPIVVDTMDNNFNKAYGALPERLYIIQ-DGK 212 (237)
T ss_pred cCCCccCCCCceeecCCCCHHHHHHHHHHH-HhhCCCCCEEEEccCCHHHHHhCCCcceEEEEE-CCE
Confidence 21 11123344444 33344 344578999988422221 777886 554
No 118
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.42 E-value=1.8e-06 Score=64.68 Aligned_cols=45 Identities=11% Similarity=0.091 Sum_probs=31.8
Q ss_pred ccCCcEEEEEEecCCCCCcHHHHHH-H--HHHHHHHccCCcEEEEEeCC
Q 029204 105 KFKGKVLLIVNVASRCGLTPSNYSE-L--SHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 105 ~~~gk~vlv~F~a~wC~~C~~~~~~-L--~~l~~~~~~~gv~vv~Is~d 150 (197)
.-+||+|+|+|+++||+.|+.+.+. + .++.+...+ ++.+|-|+.+
T Consensus 12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~ 59 (124)
T cd02955 12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDRE 59 (124)
T ss_pred HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCC
Confidence 3468999999999999999977652 2 244454433 4777777654
No 119
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.42 E-value=9.5e-07 Score=62.85 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=39.2
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 108 gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
|++++|.|++.||++|....+.+.++.++|+++ +.++.|+.+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~ 53 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-LLFVVVDAD 53 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchH
Confidence 789999999999999999999999999999976 999999765
No 120
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.42 E-value=1.5e-06 Score=59.27 Aligned_cols=40 Identities=18% Similarity=0.196 Sum_probs=36.5
Q ss_pred cEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 109 k~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
+++||+||++||+.|....+.|+++.++ ..++.++.|+.+
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~ 50 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVD 50 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECC
Confidence 7999999999999999999999999988 445999999876
No 121
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.41 E-value=6e-07 Score=62.92 Aligned_cols=49 Identities=29% Similarity=0.390 Sum_probs=42.1
Q ss_pred EecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 101 VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 101 v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
......+++++++.||+.||++|+...+.+.++.+++.. ++.++.|+..
T Consensus 25 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 25 LSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred eehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 344444588999999999999999999999999999987 5899999874
No 122
>PTZ00102 disulphide isomerase; Provisional
Probab=98.40 E-value=3.9e-07 Score=81.85 Aligned_cols=58 Identities=22% Similarity=0.185 Sum_probs=45.1
Q ss_pred EEcCCCCeEecC-ccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCC-cEEEEEeCC
Q 029204 93 VKDIDGKDVPLS-KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG-FEILAFPCN 150 (197)
Q Consensus 93 l~d~~G~~v~l~-~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~g-v~vv~Is~d 150 (197)
++.+.|+.+.-. .-.||++||+||++||++|+.+.|.++++.+++++.+ +.+..|+++
T Consensus 359 v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~ 418 (477)
T PTZ00102 359 VKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGT 418 (477)
T ss_pred eEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECC
Confidence 455556654422 2357899999999999999999999999999998753 777777765
No 123
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.35 E-value=5.6e-07 Score=80.01 Aligned_cols=60 Identities=18% Similarity=0.390 Sum_probs=47.8
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCC--cEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceE
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIF 178 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~g--v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~ 178 (197)
++++++|.||++||++|+...|.+.++++++.+.+ +.++.|+++. . .+.+ +++++. +|.+
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-------~----~~l~-~~~~i~~~Pt~ 79 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE-------E----KDLA-QKYGVSGYPTL 79 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC-------c----HHHH-HhCCCccccEE
Confidence 56799999999999999999999999999988766 8888888762 1 2233 666776 7754
No 124
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.31 E-value=2.3e-06 Score=58.27 Aligned_cols=56 Identities=9% Similarity=0.153 Sum_probs=43.2
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEE
Q 029204 111 LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFD 179 (197)
Q Consensus 111 vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~ 179 (197)
.|..||++||++|+...+.|+++.++++.+ +.++-|+.++ ..+. . +++|+. .|.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~vd~~~-------~~~~----~-~~~~v~~vPt~~ 58 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA-VEVEYINVME-------NPQK----A-MEYGIMAVPAIV 58 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc-eEEEEEeCcc-------CHHH----H-HHcCCccCCEEE
Confidence 578899999999999999999999999765 8888888752 2222 2 456665 77665
No 125
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.24 E-value=2.4e-06 Score=68.65 Aligned_cols=41 Identities=12% Similarity=0.069 Sum_probs=37.0
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 108 gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
+++|||+||++||++|+...+.|.++..+|.+ +.|+-|..+
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~--vkFvkI~ad 142 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD--TKFVKIIST 142 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC--CEEEEEEhH
Confidence 45999999999999999999999999999964 899999764
No 126
>PTZ00102 disulphide isomerase; Provisional
Probab=98.17 E-value=2.6e-06 Score=76.52 Aligned_cols=61 Identities=16% Similarity=0.305 Sum_probs=46.7
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCC--cEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEE
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFD 179 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~g--v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~ 179 (197)
+++.++|+||++||++|+...|.+.++.+++++.+ +.+..|+++. . .+.+ +++++. +|.+.
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~-------~----~~l~-~~~~i~~~Pt~~ 111 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE-------E----MELA-QEFGVRGYPTIK 111 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC-------C----HHHH-HhcCCCcccEEE
Confidence 56799999999999999999999999999887553 7777777652 1 2233 677775 77553
No 127
>PTZ00062 glutaredoxin; Provisional
Probab=98.14 E-value=6e-06 Score=66.97 Aligned_cols=38 Identities=13% Similarity=0.091 Sum_probs=34.5
Q ss_pred cEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEe
Q 029204 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (197)
Q Consensus 109 k~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is 148 (197)
..+|++||++||++|+.+.+.|.+|.++|.+ +.++-|+
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~--~~F~~V~ 55 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS--LEFYVVN 55 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC--cEEEEEc
Confidence 4789999999999999999999999999965 8888885
No 128
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.12 E-value=7.8e-06 Score=55.78 Aligned_cols=36 Identities=11% Similarity=0.064 Sum_probs=31.1
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEe
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is 148 (197)
.|.||++|||+|+...+.++++.+++..+ ++++-|.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~-~~~~~v~ 37 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID-AEFEKVT 37 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC-eEEEEeC
Confidence 47899999999999999999999999754 7776663
No 129
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.11 E-value=9.4e-06 Score=72.14 Aligned_cols=44 Identities=25% Similarity=0.285 Sum_probs=39.9
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHcc-C-CcEEEEEeCC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT-Q-GFEILAFPCN 150 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~-~-gv~vv~Is~d 150 (197)
.++.+||+||++||++|+...|.++++.+++++ . ++.++.|+++
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~ 408 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDAT 408 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECC
Confidence 478999999999999999999999999999987 2 5899999876
No 130
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.00 E-value=2e-05 Score=54.25 Aligned_cols=44 Identities=18% Similarity=0.223 Sum_probs=33.6
Q ss_pred cCCcEEEEEEecCCCCCcHHHHHHH---HHHHHHHccCCcEEEEEeCC
Q 029204 106 FKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 106 ~~gk~vlv~F~a~wC~~C~~~~~~L---~~l~~~~~~~gv~vv~Is~d 150 (197)
-+||+++|+|+++||+.|+..-..+ .++.+.+.+ ++..+-|..+
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~-~fv~v~vd~~ 61 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK-NFVLVKVDVD 61 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH-CSEEEEEETT
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC-CEEEEEEEcC
Confidence 3689999999999999999887766 344444553 4888888765
No 131
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=1.1e-05 Score=72.86 Aligned_cols=59 Identities=17% Similarity=0.391 Sum_probs=45.9
Q ss_pred cEEEEEEecCCCCCcHHHHHHHHHHHHHHccCC--cEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEE
Q 029204 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFD 179 (197)
Q Consensus 109 k~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~g--v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~ 179 (197)
..++|.|||+||+.|+...|++.+..+..++.| +.+.-|.+. ++ ...+ .+|++. ||.+.
T Consensus 43 ~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat----------~~-~~~~-~~y~v~gyPTlk 104 (493)
T KOG0190|consen 43 EFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDAT----------EE-SDLA-SKYEVRGYPTLK 104 (493)
T ss_pred ceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecc----------hh-hhhH-hhhcCCCCCeEE
Confidence 478999999999999999999999999999884 666666543 22 4454 677775 77654
No 132
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.95 E-value=3.5e-05 Score=62.64 Aligned_cols=42 Identities=14% Similarity=0.029 Sum_probs=32.5
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
++.++|+.||++||++|+...+.++++..++. .+.+.-|+.+
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~ 173 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEAN 173 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCC
Confidence 44467777999999999998888888887753 3777777654
No 133
>PHA02125 thioredoxin-like protein
Probab=97.93 E-value=2.9e-05 Score=52.64 Aligned_cols=50 Identities=10% Similarity=0.194 Sum_probs=34.8
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEEe
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFDK 180 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~d 180 (197)
|++|+++||++|+...+.|+++. .+++-|+.| .. .+.. ++|++. +|.+.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~~--------~~---~~l~-~~~~v~~~PT~~~ 52 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-------YTYVDVDTD--------EG---VELT-AKHHIRSLPTLVN 52 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-------heEEeeeCC--------CC---HHHH-HHcCCceeCeEEC
Confidence 78999999999999989887542 345556543 12 2333 667775 888873
No 134
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.92 E-value=5.6e-05 Score=46.84 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=33.4
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCC
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQ 151 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~ 151 (197)
|+.||..||+.|....+.++++ ++.+.++.++.++++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~ 38 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDE 38 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCC
Confidence 5789999999999999999999 5666679999999873
No 135
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.87 E-value=3.8e-05 Score=62.47 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=33.3
Q ss_pred cCCcEEEEEEec---CCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 106 FKGKVLLIVNVA---SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 106 ~~gk~vlv~F~a---~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
.++...|+.|.+ +||++|+...|.++++.++|.+ +++..+..|
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~--~~i~~v~vd 62 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK--LKLEIYDFD 62 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEEecC
Confidence 445456666877 9999999999999999999953 666566555
No 136
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=2.6e-05 Score=70.56 Aligned_cols=43 Identities=28% Similarity=0.345 Sum_probs=37.2
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccC-CcEEEEEeC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-GFEILAFPC 149 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~-gv~vv~Is~ 149 (197)
.+|=|||.|+|+||+.|++..|.+++|.+.|++. ++.|.-+..
T Consensus 383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDa 426 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDA 426 (493)
T ss_pred cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecc
Confidence 5788999999999999999999999999999986 466666643
No 137
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.80 E-value=7.9e-05 Score=48.94 Aligned_cols=38 Identities=11% Similarity=0.116 Sum_probs=31.7
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 111 LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 111 vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
-|+.|+++|||+|+...+.|+++.+++. ++++.-|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~ 39 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDAA 39 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcc
Confidence 4788999999999999999999977653 4888888765
No 138
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=7.7e-05 Score=65.76 Aligned_cols=64 Identities=22% Similarity=0.401 Sum_probs=50.0
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEEecCC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFDKVSQ 183 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~d~d~ 183 (197)
.+++.+|.||++||++|....|+..++...++++ +.+..|.++ +..+. +++|++. ||.+.....
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~-~~~~~vd~~-----------~~~~~-~~~y~i~gfPtl~~f~~ 110 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK-VKIGAVDCD-----------EHKDL-CEKYGIQGFPTLKVFRP 110 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc-eEEEEeCch-----------hhHHH-HHhcCCccCcEEEEEcC
Confidence 3569999999999999999999999999999884 777777665 12333 3777887 787765443
No 139
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.76 E-value=0.00019 Score=47.15 Aligned_cols=55 Identities=11% Similarity=0.131 Sum_probs=39.0
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEEec
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFDKV 181 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~d~ 181 (197)
|..|+++||++|+...+.|.+ .|+++..++.+ +..+..+++. +.++.. .|++...
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~-------~~~~~~~~~~-~~~~~~~vP~~~~~ 57 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KGIAFEEIDVE-------KDSAAREEVL-KVLGQRGVPVIVIG 57 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CCCeEEEEecc-------CCHHHHHHHH-HHhCCCcccEEEEC
Confidence 567999999999987766654 46888888776 3444455555 666654 8887754
No 140
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=8.3e-05 Score=57.07 Aligned_cols=95 Identities=24% Similarity=0.299 Sum_probs=69.4
Q ss_pred hccccccceEEEcC------CC-CeEecCc-cCCc-EEEEEEecCCCCCcHH-HHHHHHHHHHHHccCCc-EEEEEeCCC
Q 029204 83 ATEKSLYDFTVKDI------DG-KDVPLSK-FKGK-VLLIVNVASRCGLTPS-NYSELSHLYEKYKTQGF-EILAFPCNQ 151 (197)
Q Consensus 83 ~~g~~apdf~l~d~------~G-~~v~l~~-~~gk-~vlv~F~a~wC~~C~~-~~~~L~~l~~~~~~~gv-~vv~Is~d~ 151 (197)
.+|+++|+.+++.. +| ++++.++ ++|| ++|.--.+...|.|.. ++|...+++++++++|+ +|+.|++|
T Consensus 4 ~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN- 82 (165)
T COG0678 4 MVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN- 82 (165)
T ss_pred ccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC-
Confidence 57888888887765 22 2355555 5886 5666667999999996 89999999999999997 67777876
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCc--cceEEecCCcce
Q 029204 152 FGGQEPGSNPEIKEFACTRFKAE--FPIFDKVSQTYF 186 (197)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~--fpi~~d~d~~g~ 186 (197)
+.-.++.|. +..+.. --++.|.+....
T Consensus 83 -------D~FVm~AWa-k~~g~~~~I~fi~Dg~geFT 111 (165)
T COG0678 83 -------DAFVMNAWA-KSQGGEGNIKFIPDGNGEFT 111 (165)
T ss_pred -------cHHHHHHHH-HhcCCCccEEEecCCCchhh
Confidence 577888888 554554 555666555443
No 141
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=97.72 E-value=0.00021 Score=58.68 Aligned_cols=100 Identities=19% Similarity=0.265 Sum_probs=69.3
Q ss_pred ccccceEEEcCCCCeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCC---cEEEEEeCCCCCCCCCCCHHH
Q 029204 86 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG---FEILAFPCNQFGGQEPGSNPE 162 (197)
Q Consensus 86 ~~apdf~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~g---v~vv~Is~d~~~~~~~~~~~~ 162 (197)
+..|.+++.+. -.+.+.+|+++||.+.-.+|.+|...+..|+.|..+++++| +.++.|+-- +....
T Consensus 8 ~~~p~W~i~~~----~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~-------~~~s~ 76 (238)
T PF04592_consen 8 KPPPPWKIGGQ----DPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ-------GEHSR 76 (238)
T ss_pred CCCCCceECCc----hHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC-------Ccchh
Confidence 44566655443 25567899999999999999999999999999999998887 466666532 23333
Q ss_pred HH-HHHHHhcCCccceEE-e-cC--------CcceeEEEEcCCCC
Q 029204 163 IK-EFACTRFKAEFPIFD-K-VS--------QTYFLMLIIHVEGR 196 (197)
Q Consensus 163 ~~-~~~~~~~~~~fpi~~-d-~d--------~~g~~~~ii~~~G~ 196 (197)
.+ ..++.+....+||+. | .+ .+...++|+|.=||
T Consensus 77 ~~~~~l~~r~~~~ipVyqq~~~q~dvW~~L~G~kdD~~iyDRCGr 121 (238)
T PF04592_consen 77 LKYWELKRRVSEHIPVYQQDENQPDVWELLNGSKDDFLIYDRCGR 121 (238)
T ss_pred HHHHHHHHhCCCCCceecCCccccCHHHHhCCCcCcEEEEeccCc
Confidence 33 345344444599985 3 22 23336778888886
No 142
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.68 E-value=0.00012 Score=51.54 Aligned_cols=62 Identities=11% Similarity=0.080 Sum_probs=47.2
Q ss_pred CccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEE
Q 029204 104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFD 179 (197)
Q Consensus 104 ~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~ 179 (197)
.++++++-|..|++.||++|....+.++++.+++. ++.+..+..++ ..+.+ ++||+. .|.+.
T Consensus 8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~-----------~~e~a-~~~~V~~vPt~v 70 (89)
T cd03026 8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGAL-----------FQDEV-EERGIMSVPAIF 70 (89)
T ss_pred HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHh-----------CHHHH-HHcCCccCCEEE
Confidence 45778889999999999999999999999998875 37888887652 23344 667775 66554
No 143
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.65 E-value=0.0002 Score=48.79 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=41.5
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCC-ccceEE
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA-EFPIFD 179 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~-~fpi~~ 179 (197)
|+.|+++|||+|....+.|.++. +.. .++++-|+.+ ...+++++++.+.++. .+|.+.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~-~~~~~~v~~~-------~~~~~~~~~l~~~~g~~~vP~v~ 59 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP-AYEVVELDQL-------SNGSEIQDYLEEITGQRTVPNIF 59 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC-CCEEEEeeCC-------CChHHHHHHHHHHhCCCCCCeEE
Confidence 57899999999999998888876 222 2777877654 3456667766566665 588664
No 144
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.63 E-value=0.00025 Score=58.01 Aligned_cols=46 Identities=22% Similarity=0.369 Sum_probs=41.0
Q ss_pred cCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCC
Q 029204 103 LSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQ 151 (197)
Q Consensus 103 l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~ 151 (197)
+.+..++.=||+|+.+.|++|....|.|+.+.++| |+.|+.|++|.
T Consensus 115 l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG 160 (215)
T PF13728_consen 115 LKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDG 160 (215)
T ss_pred HHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCC
Confidence 34556778899999999999999999999999999 69999999983
No 145
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.53 E-value=0.00033 Score=58.72 Aligned_cols=45 Identities=7% Similarity=0.197 Sum_probs=40.3
Q ss_pred CccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCC
Q 029204 104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQ 151 (197)
Q Consensus 104 ~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~ 151 (197)
.++.++.-||+|+...|++|....|.|+.+.++| |++|+.||+|.
T Consensus 146 ~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG 190 (256)
T TIGR02739 146 QQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY---GISVIPISVDG 190 (256)
T ss_pred HHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCC
Confidence 3445678899999999999999999999999999 59999999984
No 146
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=97.43 E-value=0.0013 Score=53.39 Aligned_cols=86 Identities=15% Similarity=0.266 Sum_probs=69.5
Q ss_pred ccceEEEcCCCCeEecCc-cCCc--EEEEEEe-----cCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCC
Q 029204 88 LYDFTVKDIDGKDVPLSK-FKGK--VLLIVNV-----ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (197)
Q Consensus 88 apdf~l~d~~G~~v~l~~-~~gk--~vlv~F~-----a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~ 159 (197)
-.++.+...+|+ ++|.| |.|| .+|-.|+ ..-|+.|...+..++.......++++.++.|+- ..
T Consensus 46 ~~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSr--------aP 116 (211)
T PF05988_consen 46 DKDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSR--------AP 116 (211)
T ss_pred CCCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeC--------CC
Confidence 345778788888 88887 6887 3444444 358999999999998888999999999999994 57
Q ss_pred HHHHHHHHHHhcCCccceEEecCC
Q 029204 160 NPEIKEFACTRFKAEFPIFDKVSQ 183 (197)
Q Consensus 160 ~~~~~~~~~~~~~~~fpi~~d~d~ 183 (197)
.+++..|. ++-|.+||.++..+.
T Consensus 117 ~~~i~afk-~rmGW~~pw~Ss~gs 139 (211)
T PF05988_consen 117 LEKIEAFK-RRMGWTFPWYSSYGS 139 (211)
T ss_pred HHHHHHHH-HhcCCCceEEEcCCC
Confidence 88999998 888999999977654
No 147
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.42 E-value=0.0011 Score=48.22 Aligned_cols=72 Identities=17% Similarity=0.134 Sum_probs=42.2
Q ss_pred ccCCcEEEEEEecCCCCCcHHHHHH-H--HHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEEe
Q 029204 105 KFKGKVLLIVNVASRCGLTPSNYSE-L--SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFDK 180 (197)
Q Consensus 105 ~~~gk~vlv~F~a~wC~~C~~~~~~-L--~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~d 180 (197)
.-++|+++|+|+++||++|...... + .++.+.+++ ...++.++.+ + .+..+++ ..+++. +|.+.-
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~--------~-~e~~~~~-~~~~~~~~P~~~~ 82 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDID--------S-SEGQRFL-QSYKVDKYPHIAI 82 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCC--------C-ccHHHHH-HHhCccCCCeEEE
Confidence 3468999999999999999976542 2 233344433 3556666543 1 2344555 555554 665544
Q ss_pred cCC-ccee
Q 029204 181 VSQ-TYFL 187 (197)
Q Consensus 181 ~d~-~g~~ 187 (197)
.+. +|..
T Consensus 83 i~~~~g~~ 90 (114)
T cd02958 83 IDPRTGEV 90 (114)
T ss_pred EeCccCcE
Confidence 444 3443
No 148
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.40 E-value=0.00031 Score=53.06 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=21.7
Q ss_pred cCCcEEEEEEecCCCCCcHHHHHHH
Q 029204 106 FKGKVLLIVNVASRCGLTPSNYSEL 130 (197)
Q Consensus 106 ~~gk~vlv~F~a~wC~~C~~~~~~L 130 (197)
-+||+|+|+|+++||++|+.+-...
T Consensus 21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 21 KSNKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred HCCCeEEEEEeCCcCHhHHHHHHHh
Confidence 4689999999999999999877653
No 149
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.38 E-value=0.00024 Score=65.13 Aligned_cols=60 Identities=18% Similarity=0.184 Sum_probs=43.7
Q ss_pred cCCcEEEEEEecCCCCCcHHHHHH-HHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCC
Q 029204 106 FKGKVLLIVNVASRCGLTPSNYSE-LSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (197)
Q Consensus 106 ~~gk~vlv~F~a~wC~~C~~~~~~-L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~ 173 (197)
-++|||+|+|+|+||--|+...+. +.+...+.+-+|+..+-++.. .++.++.+.+ +++++
T Consensus 472 ~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT-------~~~p~~~~lL-k~~~~ 532 (569)
T COG4232 472 AKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVT-------ANDPAITALL-KRLGV 532 (569)
T ss_pred CCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeec-------CCCHHHHHHH-HHcCC
Confidence 355699999999999999976653 446777777777777777654 4556667777 66554
No 150
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.37 E-value=0.00054 Score=50.73 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=41.3
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccC--CcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc---cceEE
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE---FPIFD 179 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~--gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~---fpi~~ 179 (197)
+.+.+||.|+|+| |.|.. .|+.++|..+|.+. .+.|.-|.+++. +..++ .+ ++++|+++ ||.+.
T Consensus 17 ~~~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~-----~~~~~-~~-L~~~y~I~~~gyPTl~ 85 (116)
T cd03007 17 KFKYSLVKFDTAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKDY-----GEKLN-ME-LGERYKLDKESYPVIY 85 (116)
T ss_pred cCCcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEecccc-----cchhh-HH-HHHHhCCCcCCCCEEE
Confidence 4568999999944 44443 47788888887543 277777877632 11222 33 44899995 99664
No 151
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.33 E-value=0.00071 Score=56.45 Aligned_cols=45 Identities=9% Similarity=0.188 Sum_probs=40.1
Q ss_pred CccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCC
Q 029204 104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQ 151 (197)
Q Consensus 104 ~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~ 151 (197)
.++.++.=|++|+.+.||+|....|.|+.+.++| |+.|++||+|.
T Consensus 139 ~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG 183 (248)
T PRK13703 139 AKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY---GLSVIPVSVDG 183 (248)
T ss_pred HHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCC
Confidence 3445668899999999999999999999999998 69999999984
No 152
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.22 E-value=0.0019 Score=43.00 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=23.5
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
|+.||++||++|+...+.|.++ |+++-.|+++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~~~~~~idi~ 33 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------GAAYEWVDIE 33 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCceEEEeCc
Confidence 6789999999999877776544 4455556655
No 153
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.002 Score=49.80 Aligned_cols=101 Identities=22% Similarity=0.271 Sum_probs=72.7
Q ss_pred ccchhccccccc--eE-EEcCC----CCeEecCc-cCCc-EEEEEEecCCCCC-cHHHHHHHHHHHHHHccCCc-EEEEE
Q 029204 79 HATAATEKSLYD--FT-VKDID----GKDVPLSK-FKGK-VLLIVNVASRCGL-TPSNYSELSHLYEKYKTQGF-EILAF 147 (197)
Q Consensus 79 ~~~~~~g~~apd--f~-l~d~~----G~~v~l~~-~~gk-~vlv~F~a~wC~~-C~~~~~~L~~l~~~~~~~gv-~vv~I 147 (197)
.+..++|+..|+ .+ +.|.. +.++.+++ ++|| ++|.--.+.+.|. |..++|-+.+-.++++.+|+ +|+-|
T Consensus 6 ~a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicv 85 (171)
T KOG0541|consen 6 MAPIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICV 85 (171)
T ss_pred cccccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEE
Confidence 355678999999 44 33332 22788877 5885 6666677889998 56889999999999999997 67777
Q ss_pred eCCCCCCCCCCCHHHHHHHHHHhcCCc--cceEEecCCcceeE
Q 029204 148 PCNQFGGQEPGSNPEIKEFACTRFKAE--FPIFDKVSQTYFLM 188 (197)
Q Consensus 148 s~d~~~~~~~~~~~~~~~~~~~~~~~~--fpi~~d~d~~g~~~ 188 (197)
+.| ++-.++.|. +.++.+ --++.|.+....+.
T Consensus 86 SVn--------DpFv~~aW~-k~~g~~~~V~f~aD~~g~ftk~ 119 (171)
T KOG0541|consen 86 SVN--------DPFVMKAWA-KSLGANDHVKFVADPAGEFTKS 119 (171)
T ss_pred ecC--------cHHHHHHHH-hhcCccceEEEEecCCCceeee
Confidence 776 577888887 777663 55666666554433
No 154
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.13 E-value=0.00017 Score=54.40 Aligned_cols=72 Identities=14% Similarity=0.168 Sum_probs=41.2
Q ss_pred ccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEecCCc
Q 029204 105 KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVSQT 184 (197)
Q Consensus 105 ~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d~d~~ 184 (197)
.+..+..++.|..+|||-|...+|.|.++.+.... +++=-|.-| +..+.+.+|+ ..-+..-|++--.|-+
T Consensus 38 ~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~--i~~~~i~rd-------~~~el~~~~l-t~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 38 SIQKPYNILVITETWCGDCARNVPVLAKIAEANPN--IEVRIILRD-------ENKELMDQYL-TNGGRSIPTFIFLDKD 107 (129)
T ss_dssp T--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT--EEEEEE-HH-------HHHHHTTTTT-T-SS--SSEEEEE-TT
T ss_pred hcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC--CeEEEEEec-------CChhHHHHHH-hCCCeecCEEEEEcCC
Confidence 44556899999999999999999999999998753 555444444 3555666676 4444556755544433
Q ss_pred ce
Q 029204 185 YF 186 (197)
Q Consensus 185 g~ 186 (197)
|.
T Consensus 108 ~~ 109 (129)
T PF14595_consen 108 GK 109 (129)
T ss_dssp --
T ss_pred CC
Confidence 33
No 155
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.10 E-value=0.00017 Score=65.74 Aligned_cols=63 Identities=17% Similarity=0.298 Sum_probs=50.0
Q ss_pred cEEEEEEecCCCCCcHHHHHHHHHHHHHHccCC--cEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEEec
Q 029204 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFDKV 181 (197)
Q Consensus 109 k~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~g--v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~d~ 181 (197)
|.-+|.|+++|||.|+...|.++++.++..+-. |.|.+|+|- ++...-++++|++. ||.+...
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA----------~~~N~~lCRef~V~~~Ptlryf 123 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCA----------DEENVKLCREFSVSGYPTLRYF 123 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeecc----------chhhhhhHhhcCCCCCceeeec
Confidence 478999999999999999999999998876553 788888775 23344556889997 9988653
No 156
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.09 E-value=0.001 Score=56.76 Aligned_cols=60 Identities=12% Similarity=0.312 Sum_probs=41.7
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHccC---C-cEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEE
Q 029204 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ---G-FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFD 179 (197)
Q Consensus 108 gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~---g-v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~ 179 (197)
...|+|.|+|+||++.+...|.+.+..+.|+++ | +.+--|.|| .. .+++.+|.++ ||.+.
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd--------~e----~~ia~ky~I~KyPTlK 77 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCD--------KE----DDIADKYHINKYPTLK 77 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccc--------hh----hHHhhhhccccCceee
Confidence 468999999999999999999999888776644 2 333334444 22 2333566665 88765
No 157
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.84 E-value=0.0062 Score=41.95 Aligned_cols=38 Identities=11% Similarity=0.127 Sum_probs=31.6
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 111 LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 111 vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
-|+.|..+|||+|.+....|+++..++. |+.+.-|+++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~--~i~~~~idi~ 39 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD--DFDYRYVDIH 39 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc--CCcEEEEECC
Confidence 3778899999999999999999998763 5777777765
No 158
>smart00594 UAS UAS domain.
Probab=96.74 E-value=0.0059 Score=45.20 Aligned_cols=69 Identities=10% Similarity=0.121 Sum_probs=42.8
Q ss_pred cCCcEEEEEEecCCCCCcHHHHHHH---HHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEEec
Q 029204 106 FKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFDKV 181 (197)
Q Consensus 106 ~~gk~vlv~F~a~wC~~C~~~~~~L---~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~d~ 181 (197)
-++|.++|+|++.||+.|......+ .++.+.. ++.+.++.++.+. . +..+.. +.+++. ||.+.-.
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i-~~~fv~~~~dv~~--------~-eg~~l~-~~~~~~~~P~~~~l 93 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLI-RENFIFWQVDVDT--------S-EGQRVS-QFYKLDSFPYVAIV 93 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHH-HcCEEEEEecCCC--------h-hHHHHH-HhcCcCCCCEEEEE
Confidence 4689999999999999999776542 1233333 3346666665441 2 224454 666664 7766555
Q ss_pred CCcc
Q 029204 182 SQTY 185 (197)
Q Consensus 182 d~~g 185 (197)
+.++
T Consensus 94 ~~~~ 97 (122)
T smart00594 94 DPRT 97 (122)
T ss_pred ecCC
Confidence 5454
No 159
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.68 E-value=0.013 Score=38.07 Aligned_cols=56 Identities=11% Similarity=0.162 Sum_probs=34.8
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcC-CccceEEecC
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK-AEFPIFDKVS 182 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~-~~fpi~~d~d 182 (197)
++.|...||+.|......|.+ .|+++..+.+|. ..+...++. +.++ ..+|++.+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~-------~~~~~~~~~-~~~~~~~vP~i~~~~ 58 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RGIPFEEVDVDE-------DPEALEELK-KLNGYRSVPVVVIGD 58 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CCCCeEEEeCCC-------CHHHHHHHH-HHcCCcccCEEEECC
Confidence 567889999999976555544 457777777652 233333333 3333 4688887644
No 160
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0046 Score=54.52 Aligned_cols=43 Identities=19% Similarity=0.181 Sum_probs=36.9
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHcc-CCcEEEEEeCC
Q 029204 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKT-QGFEILAFPCN 150 (197)
Q Consensus 108 gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~-~gv~vv~Is~d 150 (197)
.+..+|.|++.||++|+...++..++...++. .++.+..+.++
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~ 205 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT 205 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccc
Confidence 34899999999999999999999999999974 56888888653
No 161
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.52 E-value=0.011 Score=39.90 Aligned_cols=57 Identities=18% Similarity=0.137 Sum_probs=37.8
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCC-ccceEEe
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA-EFPIFDK 180 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~-~fpi~~d 180 (197)
|+.|..+|||+|......|+++..+ .+++-|..+ +..+++++++.+.+|. .+|.+..
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~-----~~~~~v~~~-------~~~~~~~~~~~~~~g~~~~P~v~~ 59 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK-----PAVVELDQH-------EDGSEIQDYLQELTGQRTVPNVFI 59 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC-----cEEEEEeCC-------CChHHHHHHHHHHhCCCCCCeEEE
Confidence 5778899999999877777776542 556666654 2345566666455555 5887643
No 162
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.41 E-value=0.018 Score=47.00 Aligned_cols=90 Identities=13% Similarity=0.235 Sum_probs=66.8
Q ss_pred ceEEEcCCCCeEecCc-cCCcEE-EE-EE-ec----CCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHH
Q 029204 90 DFTVKDIDGKDVPLSK-FKGKVL-LI-VN-VA----SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP 161 (197)
Q Consensus 90 df~l~d~~G~~v~l~~-~~gk~v-lv-~F-~a----~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~ 161 (197)
++.+...+|+ .+|.| |.||-. || .| ++ .-|+.|......+.-.....+..++.+++|+- .-.+
T Consensus 54 ~Y~Fe~~~G~-~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsR--------APl~ 124 (247)
T COG4312 54 DYVFETENGK-KSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSR--------APLE 124 (247)
T ss_pred eeEeecCCcc-hhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEec--------CcHH
Confidence 4555556674 77777 688733 33 23 23 37999999999998888888888999999984 4678
Q ss_pred HHHHHHHHhcCCccceEEecCCcceeEE
Q 029204 162 EIKEFACTRFKAEFPIFDKVSQTYFLML 189 (197)
Q Consensus 162 ~~~~~~~~~~~~~fpi~~d~d~~g~~~~ 189 (197)
++..|- ++.|.+||.+...+...-+-|
T Consensus 125 ~l~~~k-~rmGW~f~w~Ss~~s~Fn~Df 151 (247)
T COG4312 125 ELVAYK-RRMGWQFPWVSSTDSDFNRDF 151 (247)
T ss_pred HHHHHH-HhcCCcceeEeccCccccccc
Confidence 888887 888999999988776443333
No 163
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.32 E-value=0.0075 Score=45.18 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=32.8
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEe
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is 148 (197)
.++++|+.|+-.+||+|....+.|.++..++.+ +.++-+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~ 43 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD--VRVVFKE 43 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC--ceEEEEe
Confidence 467999999999999999999999999988764 4444443
No 164
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.08 E-value=0.02 Score=43.44 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=40.7
Q ss_pred CeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccC-CcEEEEEeCC
Q 029204 99 KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-GFEILAFPCN 150 (197)
Q Consensus 99 ~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~-gv~vv~Is~d 150 (197)
..+.+.+-.++++|+.|+--.||+|....+.+.++.++|-+. .+.++.....
T Consensus 3 ~~~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 55 (162)
T PF13462_consen 3 YDPTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVP 55 (162)
T ss_dssp TSEEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESS
T ss_pred CCCeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcc
Confidence 345566667889999999999999999999999999999333 3888888763
No 165
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.03 E-value=0.021 Score=42.49 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=32.5
Q ss_pred CCcEEEEEEecC-------CCCCcHHHHHHHHHHHHHHccCCcEEEEEeC
Q 029204 107 KGKVLLIVNVAS-------RCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (197)
Q Consensus 107 ~gk~vlv~F~a~-------wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~ 149 (197)
+|++++|.|.++ |||.|..-.|.+++..++..+ +..+|-|.+
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~V 66 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEV 66 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE-
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEc
Confidence 567899999876 999999999999999988544 577777765
No 166
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=95.87 E-value=0.019 Score=41.77 Aligned_cols=49 Identities=18% Similarity=0.391 Sum_probs=40.6
Q ss_pred HHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEecCCccee
Q 029204 130 LSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVSQTYFL 187 (197)
Q Consensus 130 L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~ 187 (197)
|.+..+++++.|+++|.|.+. +.+.+++|+ +..+.+||++.|++....+
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g--------~~~~~~~f~-~~~~~p~~ly~D~~~~lY~ 50 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCG--------SPEGIEKFC-ELTGFPFPLYVDPERKLYK 50 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcC--------CHHHHHHHH-hccCCCCcEEEeCcHHHHH
Confidence 567788888899999999964 666699999 7889999999999866543
No 167
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=95.54 E-value=0.017 Score=49.54 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=34.3
Q ss_pred cEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 109 k~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
...+|+|||+||+.|++..|..+++-.+.++-|+.|-.-.+|
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlD 85 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLD 85 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccc
Confidence 388999999999999999999999988888887654433333
No 168
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.51 E-value=0.086 Score=33.80 Aligned_cols=54 Identities=19% Similarity=0.100 Sum_probs=34.0
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCC-ccceEEe
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA-EFPIFDK 180 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~-~fpi~~d 180 (197)
|+.|..+|||.|+.....|++. ++.+.-++++ .. ++..+.+.+..+. .+|++..
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~-------~i~~~~~di~-------~~-~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL-------GIEFEEIDIL-------ED-GELREELKELSGWPTVPQIFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCcEEEEECC-------CC-HHHHHHHHHHhCCCCcCEEEE
Confidence 5678899999999776666644 3566666654 12 2244444344454 6887764
No 169
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.037 Score=41.09 Aligned_cols=42 Identities=10% Similarity=0.174 Sum_probs=34.9
Q ss_pred CCcEEEEEEecC--------CCCCcHHHHHHHHHHHHHHccCCcEEEEEeC
Q 029204 107 KGKVLLIVNVAS--------RCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (197)
Q Consensus 107 ~gk~vlv~F~a~--------wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~ 149 (197)
+|+-+.|.|.++ |||.|..-.|.+.+..+...+ ++.+|-+.+
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~-~~~~v~v~V 73 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE-DVHFVHVYV 73 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC-ceEEEEEEe
Confidence 667788888876 999999999999999997665 488888865
No 170
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=95.45 E-value=0.3 Score=38.07 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=67.2
Q ss_pred ccccccceEEEc----------CCCCeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHH-HccCCcEEEEE-eCCC
Q 029204 84 TEKSLYDFTVKD----------IDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEK-YKTQGFEILAF-PCNQ 151 (197)
Q Consensus 84 ~g~~apdf~l~d----------~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~-~~~~gv~vv~I-s~d~ 151 (197)
.|+.+|...+.| ++.+.+...++.||+-||...|-.--.=....|-+..+.+. |.....+..+| +.|+
T Consensus 3 ~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~dD 82 (160)
T PF09695_consen 3 LGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLDD 82 (160)
T ss_pred CCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEeccc
Confidence 455566665554 34456777788999999998876665555556666666665 55555666665 3332
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCccc---eEEecCCcceeEE----------EEcCCCC
Q 029204 152 FGGQEPGSNPEIKEFACTRFKAEFP---IFDKVSQTYFLML----------IIHVEGR 196 (197)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~fp---i~~d~d~~g~~~~----------ii~~~G~ 196 (197)
--..+.--++..+ ++.+-.|| ++.|.+..+.+.. ++|++|+
T Consensus 83 ---Ai~gt~~fVrss~-e~~kk~~p~s~~vlD~~G~~~~aW~L~~~~SaiiVlDK~G~ 136 (160)
T PF09695_consen 83 ---AIWGTGGFVRSSA-EDSKKEFPWSQFVLDSNGVVRKAWQLQEESSAIIVLDKQGK 136 (160)
T ss_pred ---ccccchHHHHHHH-HHhhhhCCCcEEEEcCCCceeccccCCCCCceEEEEcCCcc
Confidence 1234555566666 44344443 5677766555333 8888886
No 171
>PHA03050 glutaredoxin; Provisional
Probab=95.40 E-value=0.044 Score=39.91 Aligned_cols=59 Identities=14% Similarity=0.163 Sum_probs=33.7
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCC-ccceEE
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA-EFPIFD 179 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~-~fpi~~ 179 (197)
|+.|..+|||+|.+....|+++--+++ .++++-|.-+ +...++++.+.+..|. +.|.+.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~--~~~~i~i~~~-------~~~~~~~~~l~~~tG~~tVP~If 74 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRG--AYEIVDIKEF-------KPENELRDYFEQITGGRTVPRIF 74 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcC--CcEEEECCCC-------CCCHHHHHHHHHHcCCCCcCEEE
Confidence 677889999999866665555432221 2455555321 2334556666454444 577664
No 172
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=95.37 E-value=0.085 Score=36.49 Aligned_cols=37 Identities=11% Similarity=0.076 Sum_probs=27.0
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
|+.|..+|||+|......|+++..++. ++.+.-++.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIH 38 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECC
Confidence 677889999999988888877765543 3566666654
No 173
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=95.30 E-value=0.095 Score=33.37 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=34.9
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcC-CccceEEe
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK-AEFPIFDK 180 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~-~~fpi~~d 180 (197)
|+.|...|||.|......| ++.|+.+-.+.++ ... +.++.+.+..| .++|.+.-
T Consensus 1 V~vy~~~~C~~C~~~~~~L-------~~~~i~y~~~dv~-------~~~-~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL-------DEKGIPYEEVDVD-------EDE-EAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH-------HHTTBEEEEEEGG-------GSH-HHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHH-------HHcCCeeeEcccc-------cch-hHHHHHHHHcCCCccCEEEE
Confidence 5788899999998665555 3456777777775 222 44555535434 56887653
No 174
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.11 Score=35.58 Aligned_cols=58 Identities=10% Similarity=0.121 Sum_probs=38.7
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhc-CCccceEEecC
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRF-KAEFPIFDKVS 182 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~-~~~fpi~~d~d 182 (197)
++.|--++||+|.+-...|. .+|++..-|.++. +..++.++++.+.. ..+.|.+...+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~------~~~~~~~~~~~~~~g~~tvP~I~i~~ 61 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDD------DEPEEAREMVKRGKGQRTVPQIFIGG 61 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEecC------CcHHHHHHHHHHhCCCCCcCEEEECC
Confidence 56777889999997666665 5677777776652 34456677773332 35699776555
No 175
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.26 E-value=0.16 Score=33.54 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=34.0
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCC--ccceEE
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA--EFPIFD 179 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~--~fpi~~ 179 (197)
|+.|..+|||.|......|++ .|+.+-.+.++ .+.+..+++. +..+. .+|.+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~-------~~~~~~~~~~-~~~~~~~~vP~v~ 56 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KGVDYEEIDVD-------GDPALREEMI-NRSGGRRTVPQIF 56 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CCCcEEEEECC-------CCHHHHHHHH-HHhCCCCccCEEE
Confidence 567889999999876666654 46777777765 2344444444 44443 688765
No 176
>PRK10329 glutaredoxin-like protein; Provisional
Probab=95.03 E-value=0.17 Score=34.75 Aligned_cols=56 Identities=13% Similarity=0.221 Sum_probs=35.8
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEecC
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVS 182 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d~d 182 (197)
|+.|..+|||+|......|. ++|+.+-.|.++ ++ ++..+.+........|++...|
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~-------~~gI~~~~idi~-------~~-~~~~~~~~~~g~~~vPvv~i~~ 58 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAME-------SRGFDFEMINVD-------RV-PEAAETLRAQGFRQLPVVIAGD 58 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHH-------HCCCceEEEECC-------CC-HHHHHHHHHcCCCCcCEEEECC
Confidence 56788899999987655553 367888888776 22 3334444233224688886554
No 177
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=94.71 E-value=0.17 Score=33.98 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=31.8
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhc-CCccceEE
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRF-KAEFPIFD 179 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~-~~~fpi~~ 179 (197)
|+.|+.+|||.|......|++ .|+++--++++ .+.+..+++. +.. ...+|.+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~-------~~i~~~~~di~-------~~~~~~~~~~-~~~g~~~vP~i~ 54 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSS-------KGVTFTEIRVD-------GDPALRDEMM-QRSGRRTVPQIF 54 (79)
T ss_pred CEEEecCCChhHHHHHHHHHH-------cCCCcEEEEec-------CCHHHHHHHH-HHhCCCCcCEEE
Confidence 467889999999976666653 34555555554 2334444444 333 34588764
No 178
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=94.71 E-value=0.066 Score=41.29 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=35.7
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~ 149 (197)
.+++.|+.|+--.||+|....+.+.++.+++.+ ++.+.-+..
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK-DVKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC-CceEEEcCC
Confidence 578999999999999999999999999999855 376665543
No 179
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.60 E-value=0.17 Score=34.23 Aligned_cols=57 Identities=11% Similarity=0.186 Sum_probs=35.3
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcC-CccceEEe
Q 029204 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK-AEFPIFDK 180 (197)
Q Consensus 108 gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~-~~fpi~~d 180 (197)
.+.-|+.|..+|||+|......|++ .|+.+..++++. + ++..++. +.+| ..+|++..
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~-------~gi~y~~idi~~------~--~~~~~~~-~~~g~~~vP~i~i 63 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKE-------KGYDFEEIPLGN------D--ARGRSLR-AVTGATTVPQVFI 63 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHH-------cCCCcEEEECCC------C--hHHHHHH-HHHCCCCcCeEEE
Confidence 3445778889999999977666642 467666777652 1 1122333 3344 56887754
No 180
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=94.51 E-value=0.35 Score=31.96 Aligned_cols=32 Identities=9% Similarity=0.124 Sum_probs=23.3
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
|+.|..+|||.|+.....|++ .|+.+-.+.++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~gi~~~~~di~ 34 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KGLPYVEINID 34 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CCCceEEEECC
Confidence 456778999999976666664 56777777665
No 181
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=94.40 E-value=0.19 Score=33.28 Aligned_cols=54 Identities=11% Similarity=0.171 Sum_probs=34.9
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCC-ccceEEec
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA-EFPIFDKV 181 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~-~fpi~~d~ 181 (197)
|..|..++||.|......|++ +|+.+-.++++ ++. +..+.+ ++.|. ..|++...
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~-------~~~-~~~~~~-~~~g~~~vP~v~~~ 55 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEE-------HGIAFEEINID-------EQP-EAIDYV-KAQGFRQVPVIVAD 55 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHH-------CCCceEEEECC-------CCH-HHHHHH-HHcCCcccCEEEEC
Confidence 356778999999977777753 46777777765 222 344444 33464 68887653
No 182
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=94.32 E-value=0.27 Score=34.89 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=34.5
Q ss_pred CCcEEEEEEec----CCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCC-ccceEEe
Q 029204 107 KGKVLLIVNVA----SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA-EFPIFDK 180 (197)
Q Consensus 107 ~gk~vlv~F~a----~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~-~fpi~~d 180 (197)
+.+.|+|+=.+ +|||+|......|++ .|+.+..+.++ +. .++++++.+..|. ++|.+..
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~i~~~~~di~-------~~-~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKA-------CGVPFAYVNVL-------ED-PEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHH-------cCCCEEEEECC-------CC-HHHHHHHHHHhCCCCCCEEEE
Confidence 34566666543 799999866555544 34566666654 12 4556566444444 6886653
No 183
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=94.28 E-value=0.22 Score=35.48 Aligned_cols=56 Identities=11% Similarity=0.077 Sum_probs=31.5
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCC-ccceEE
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA-EFPIFD 179 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~-~fpi~~ 179 (197)
|+.|..+|||+|.+....|++ + |+.+-.+.+|. .....++++.+.+..|. ++|.+.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~----~---~i~~~~vdid~-----~~~~~~~~~~l~~~tg~~tvP~Vf 66 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLT----L---GVNPAVHEIDK-----EPAGKDIENALSRLGCSPAVPAVF 66 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHH----c---CCCCEEEEcCC-----CccHHHHHHHHHHhcCCCCcCeEE
Confidence 566778999999865554443 3 34444455542 12334455555344444 688764
No 184
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=94.07 E-value=0.16 Score=39.82 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=18.2
Q ss_pred EecCccCCcEEEEEEecCCCCCcHHHHH
Q 029204 101 VPLSKFKGKVLLIVNVASRCGLTPSNYS 128 (197)
Q Consensus 101 v~l~~~~gk~vlv~F~a~wC~~C~~~~~ 128 (197)
+....-++|+++|.+..+||..|..+..
T Consensus 30 ~~~Ak~e~KpIfl~ig~~~C~wChvM~~ 57 (163)
T PF03190_consen 30 LEKAKKENKPIFLSIGYSWCHWCHVMER 57 (163)
T ss_dssp HHHHHHHT--EEEEEE-TT-HHHHHHHH
T ss_pred HHHHHhcCCcEEEEEEecCCcchhhhcc
Confidence 3344457899999999999999996653
No 185
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=93.41 E-value=0.44 Score=37.89 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=26.7
Q ss_pred eEecCccCCcEEEEEEecCCCCCcHHHHHHHHH
Q 029204 100 DVPLSKFKGKVLLIVNVASRCGLTPSNYSELSH 132 (197)
Q Consensus 100 ~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~ 132 (197)
.+.+..-.+++.|+.|.-..||+|++..+.|.+
T Consensus 69 ~i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 69 AIVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CeEEcCCCCCEEEEEEECCCCccHHHHHHHHhh
Confidence 344444457899999999999999999998877
No 186
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.33 E-value=0.2 Score=40.09 Aligned_cols=80 Identities=18% Similarity=0.277 Sum_probs=55.2
Q ss_pred EcCCCCeEecCcc-CCc-EEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhc
Q 029204 94 KDIDGKDVPLSKF-KGK-VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRF 171 (197)
Q Consensus 94 ~d~~G~~v~l~~~-~gk-~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~ 171 (197)
.|..|+.|...++ +.+ .+|....-.-|-.|+.+...|.++..-.++.|+..++|-. .+......|. ++.
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~--------g~~~~~~~f~-~q~ 105 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGP--------GSHVQFEDFW-DQT 105 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEec--------cceeecchhh-ccc
Confidence 6778999999885 444 5555556889999999999999997667778999999963 2333344454 222
Q ss_pred CCccceEEecC
Q 029204 172 KAEFPIFDKVS 182 (197)
Q Consensus 172 ~~~fpi~~d~d 182 (197)
...=-|+.|++
T Consensus 106 ~f~gevylD~~ 116 (197)
T KOG4498|consen 106 YFSGEVYLDPH 116 (197)
T ss_pred CcceeEEEcCc
Confidence 22235566554
No 187
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=93.31 E-value=0.43 Score=33.20 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=33.9
Q ss_pred CCcEEEEEEec----CCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCC-ccceEE
Q 029204 107 KGKVLLIVNVA----SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA-EFPIFD 179 (197)
Q Consensus 107 ~gk~vlv~F~a----~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~-~fpi~~ 179 (197)
++++|+|+=-. +|||+|......|++. |+.+-.+.++ .+ .++++.+.+..|. ++|.+.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-------~i~y~~idv~-------~~-~~~~~~l~~~~g~~tvP~vf 68 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL-------GVDFGTFDIL-------ED-EEVRQGLKEYSNWPTFPQLY 68 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-------CCCeEEEEcC-------CC-HHHHHHHHHHhCCCCCCEEE
Confidence 45566665433 6999998665555543 3555555554 12 4566666455454 588764
No 188
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=93.16 E-value=0.67 Score=34.15 Aligned_cols=85 Identities=15% Similarity=0.240 Sum_probs=51.9
Q ss_pred cCccCCc--EEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCC-CCCCHHHHHHHHHHhcCCccceEE
Q 029204 103 LSKFKGK--VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQ-EPGSNPEIKEFACTRFKAEFPIFD 179 (197)
Q Consensus 103 l~~~~gk--~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~-~~~~~~~~~~~~~~~~~~~fpi~~ 179 (197)
|+++++| ++||+=...--+.-..++..|++-...+.++.+.++.|.-+..... +.-+.+.+.... ++++++
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr-~~l~~~----- 76 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALR-KRLRIP----- 76 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHH-HHhCCC-----
Confidence 4566664 4444333345555677788888888889999998888854432111 122333344433 554443
Q ss_pred ecCCcceeEEEEcCCCC
Q 029204 180 KVSQTYFLMLIIHVEGR 196 (197)
Q Consensus 180 d~d~~g~~~~ii~~~G~ 196 (197)
.+++.+++|+++|.
T Consensus 77 ---~~~f~~vLiGKDG~ 90 (118)
T PF13778_consen 77 ---PGGFTVVLIGKDGG 90 (118)
T ss_pred ---CCceEEEEEeCCCc
Confidence 45688889999985
No 189
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=92.68 E-value=0.23 Score=40.98 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=32.3
Q ss_pred EecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEe
Q 029204 101 VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (197)
Q Consensus 101 v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is 148 (197)
+....-+||.+|+.|.-..||+|++..++|.++.+ .|+.|.-+.
T Consensus 100 i~~g~~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~v~v~~~~ 143 (232)
T PRK10877 100 IVYKAPQEKHVITVFTDITCGYCHKLHEQMKDYNA----LGITVRYLA 143 (232)
T ss_pred EEecCCCCCEEEEEEECCCChHHHHHHHHHHHHhc----CCeEEEEEe
Confidence 33333357899999999999999999988876643 466665553
No 190
>PRK10638 glutaredoxin 3; Provisional
Probab=92.58 E-value=0.83 Score=31.01 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=32.1
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCC-ccceEEe
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA-EFPIFDK 180 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~-~fpi~~d 180 (197)
|+.|...|||+|......|++ +|+...-+.++. ..+...++. +..+. .+|.+..
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~~-------~~~~~~~l~-~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-------KGVSFQEIPIDG-------DAAKREEMI-KRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-------cCCCcEEEECCC-------CHHHHHHHH-HHhCCCCcCEEEE
Confidence 556778999999976666654 355555566651 222333343 44444 4887743
No 191
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=92.50 E-value=0.38 Score=35.37 Aligned_cols=63 Identities=13% Similarity=0.199 Sum_probs=39.8
Q ss_pred ccCCcEEEEEEecC----CCCCcHHHH--HHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCC-ccce
Q 029204 105 KFKGKVLLIVNVAS----RCGLTPSNY--SELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA-EFPI 177 (197)
Q Consensus 105 ~~~gk~vlv~F~a~----wC~~C~~~~--~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~-~fpi 177 (197)
+-++|.++|+++.+ ||.+|+..+ +++.++.+ .+..+++.+.+. .+..+.. ..+++ .||.
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln----~~fv~w~~dv~~---------~eg~~la-~~l~~~~~P~ 79 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN----TRMLFWACSVAK---------PEGYRVS-QALRERTYPF 79 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH----cCEEEEEEecCC---------hHHHHHH-HHhCCCCCCE
Confidence 34689999999999 889998665 45555443 347777776642 2223333 44455 4776
Q ss_pred EEec
Q 029204 178 FDKV 181 (197)
Q Consensus 178 ~~d~ 181 (197)
+.-.
T Consensus 80 ~~~l 83 (116)
T cd02991 80 LAMI 83 (116)
T ss_pred EEEE
Confidence 6544
No 192
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=92.27 E-value=0.28 Score=39.44 Aligned_cols=43 Identities=9% Similarity=0.102 Sum_probs=33.2
Q ss_pred cCCcEEEEEEecCCCCCcHHHHHHH---HHHHHHHccCCcEEEEEeC
Q 029204 106 FKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPC 149 (197)
Q Consensus 106 ~~gk~vlv~F~a~wC~~C~~~~~~L---~~l~~~~~~~gv~vv~Is~ 149 (197)
..|++.||.|+.-.||+|....+.+ ..+.+.+.+ ++.++-+..
T Consensus 35 ~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~~~ 80 (207)
T PRK10954 35 VAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKYHV 80 (207)
T ss_pred CCCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC-CCeEEEecc
Confidence 3578889999999999999988765 777777765 466666554
No 193
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=92.22 E-value=0.8 Score=33.17 Aligned_cols=56 Identities=11% Similarity=0.113 Sum_probs=32.6
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcC-CccceEE
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK-AEFPIFD 179 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~-~~fpi~~ 179 (197)
+|.|--+||++|.. ++++..++.- ...|+-+.-+ ....++++++.+-.+ -++|.+.
T Consensus 16 VVifSKs~C~~c~~----~k~ll~~~~v-~~~vvELD~~-------~~g~eiq~~l~~~tg~~tvP~vF 72 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHR----AKELLSDLGV-NPKVVELDED-------EDGSEIQKALKKLTGQRTVPNVF 72 (104)
T ss_pred EEEEECCcCchHHH----HHHHHHhCCC-CCEEEEccCC-------CCcHHHHHHHHHhcCCCCCCEEE
Confidence 44566799999986 4555555332 2555555433 344588888843332 3577543
No 194
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.08 E-value=0.17 Score=41.53 Aligned_cols=45 Identities=16% Similarity=0.025 Sum_probs=39.8
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQ 151 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~ 151 (197)
+.+.-||.|++.|.+-|++..|.+.+|..+|...++.+=.|.+..
T Consensus 143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGr 187 (265)
T KOG0914|consen 143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGR 187 (265)
T ss_pred CceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeecc
Confidence 345889999999999999999999999999998888888887653
No 195
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=91.83 E-value=0.68 Score=31.12 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=30.0
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
|+.|+...||.|....+.+.++.+.+.+ ++++.-+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFP 38 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccc
Confidence 4678899999999999999999855544 4777766654
No 196
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=91.63 E-value=0.93 Score=29.73 Aligned_cols=32 Identities=13% Similarity=0.262 Sum_probs=23.0
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
|+.|..+|||+|......|++ .|+.+..++++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~i~~~~~~v~ 34 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NGISYEEIPLG 34 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cCCCcEEEECC
Confidence 567788999999977666653 35666666665
No 197
>PRK10824 glutaredoxin-4; Provisional
Probab=91.15 E-value=0.73 Score=33.97 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=32.4
Q ss_pred CCcEEEEEEec----CCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCC-ccceE
Q 029204 107 KGKVLLIVNVA----SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA-EFPIF 178 (197)
Q Consensus 107 ~gk~vlv~F~a----~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~-~fpi~ 178 (197)
+.++|+|+--+ +|||+|.+-...|+++ |++.-.|.++ + ..++++++.+..|. ++|-+
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-------~i~~~~idi~-------~-d~~~~~~l~~~sg~~TVPQI 74 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSAC-------GERFAYVDIL-------Q-NPDIRAELPKYANWPTFPQL 74 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHc-------CCCceEEEec-------C-CHHHHHHHHHHhCCCCCCeE
Confidence 34566666444 4999999766666554 2333334444 1 24567776455454 47743
No 198
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.00 E-value=0.21 Score=41.01 Aligned_cols=42 Identities=21% Similarity=0.258 Sum_probs=35.5
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
+++.+++.||+.||.+|......+.++.+.. +.++++.+..+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~ 57 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAE 57 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhh
Confidence 7789999999999999998888888888777 44888888765
No 199
>PHA03075 glutaredoxin-like protein; Provisional
Probab=90.26 E-value=1.2 Score=32.96 Aligned_cols=68 Identities=19% Similarity=0.213 Sum_probs=47.3
Q ss_pred cEEEEEEecCCCCCcHHHHHHHHHHHHHHccCC------------cEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccc
Q 029204 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG------------FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFP 176 (197)
Q Consensus 109 k~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~g------------v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fp 176 (197)
|.+||-|--+.|+.|...-..|+++..+|.=.- ++++++. ..-.-+.++. +..+-+|-
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlSfFsK~g~v~~lg~d---------~~y~lInn~~-~~lgne~v 71 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYDILRVNILSFFSKDGQVKVLGMD---------KGYTLINNFF-KHLGNEYV 71 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeeeeeccCCceEEEecc---------cceehHHHHH-HhhcccEE
Confidence 568899999999999988888888888874222 3444431 2334455666 77788888
Q ss_pred eEEecCCcce
Q 029204 177 IFDKVSQTYF 186 (197)
Q Consensus 177 i~~d~d~~g~ 186 (197)
.+.++|-...
T Consensus 72 ~lfKydp~t~ 81 (123)
T PHA03075 72 SLFKYDPETK 81 (123)
T ss_pred EEEEEcCCCC
Confidence 8887774433
No 200
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=89.61 E-value=0.73 Score=30.88 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=23.8
Q ss_pred ecCCCCCcHHHHHHHHHHHHHHccCCcEEEEE
Q 029204 116 VASRCGLTPSNYSELSHLYEKYKTQGFEILAF 147 (197)
Q Consensus 116 ~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~I 147 (197)
++.+|+.|......++++.++++ ..++++-+
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~ 36 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELG-IEVEIIDI 36 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTT-EEEEEEET
T ss_pred eCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEc
Confidence 67889999999999999999984 22444444
No 201
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=89.34 E-value=1.4 Score=36.78 Aligned_cols=40 Identities=5% Similarity=0.080 Sum_probs=30.2
Q ss_pred cCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEe
Q 029204 106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (197)
Q Consensus 106 ~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is 148 (197)
-.+|.+|+.|.-..||+|++...++.++.+. . +++|.-+.
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g--~V~v~~ip 154 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDS-G--KVQLRHIL 154 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHhhc-C--ceEEEEEe
Confidence 3567899999999999999999998876654 1 25555443
No 202
>PTZ00062 glutaredoxin; Provisional
Probab=88.30 E-value=1.6 Score=35.40 Aligned_cols=58 Identities=12% Similarity=0.241 Sum_probs=33.8
Q ss_pred CCcEEEEEEec----CCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCC-ccceEE
Q 029204 107 KGKVLLIVNVA----SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA-EFPIFD 179 (197)
Q Consensus 107 ~gk~vlv~F~a----~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~-~fpi~~ 179 (197)
+.++|+|+=-+ +|||+|++....|++ .|+.+..+.++ ..+++++.+.+..|. ++|.+.
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~-------~~i~y~~~DI~--------~d~~~~~~l~~~sg~~TvPqVf 173 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNS-------SGVKYETYNIF--------EDPDLREELKVYSNWPTYPQLY 173 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHHH-------cCCCEEEEEcC--------CCHHHHHHHHHHhCCCCCCeEE
Confidence 34566665543 689999866555553 35666666654 224566666444444 578654
No 203
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=87.94 E-value=1.3 Score=32.23 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=36.0
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCcc
Q 029204 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 175 (197)
Q Consensus 113 v~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~f 175 (197)
..|+.++|+.|+.-..-|++ +|+++..|+.. +++.+.+++.+++ +..|..+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~el~~l~-~~~~~~~ 52 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-------NGIEYQFIDIG----EDGPTREELLDIL-SLLEDGI 52 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCceEEEecC----CChhhHHHHHHHH-HHcCCCH
Confidence 45778999999976665555 46677777654 3467888899888 6666543
No 204
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=87.85 E-value=1.6 Score=31.65 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=33.4
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCC
Q 029204 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (197)
Q Consensus 113 v~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~ 173 (197)
..|..++|+.|+....-|++ +|+.+-.+++. .++.+.+++.+++ .+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~el~~~~-~~~~~ 50 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIV----EEPPSKEELKKWL-EKSGL 50 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCceEEeccc----CCcccHHHHHHHH-HHcCC
Confidence 45778999999866655544 45666666654 2356788888888 55554
No 205
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.84 E-value=1.7 Score=35.43 Aligned_cols=54 Identities=22% Similarity=0.263 Sum_probs=41.0
Q ss_pred EcCCCCeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEE
Q 029204 94 KDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAF 147 (197)
Q Consensus 94 ~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~I 147 (197)
...+++.+...+..++++++.|.--.||+|+..++.|.+.+..+.+..+.+.-+
T Consensus 70 ~~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~~~ 123 (244)
T COG1651 70 LTPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLREF 123 (244)
T ss_pred ecCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEEEEe
Confidence 344666666666666899999999999999999999999888887654433333
No 206
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=87.26 E-value=1.9 Score=30.65 Aligned_cols=49 Identities=18% Similarity=0.327 Sum_probs=31.8
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcC
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK 172 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~ 172 (197)
|..|..++|+.|+....-|++ +|+++-.|++. +++.+.++++++. .+.+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~~l~~~~-~~~~ 49 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEE-------HGIEYEFIDYL----KEPPTKEELKELL-AKLG 49 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHH-------cCCCcEEEeec----cCCCCHHHHHHHH-HhcC
Confidence 356778999999866554444 35555555543 2356788888887 5545
No 207
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=86.51 E-value=2 Score=31.19 Aligned_cols=74 Identities=19% Similarity=0.313 Sum_probs=49.1
Q ss_pred CeEecCccCC-cEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCC---CCCCHHHHHHHHHHhcCCc
Q 029204 99 KDVPLSKFKG-KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQ---EPGSNPEIKEFACTRFKAE 174 (197)
Q Consensus 99 ~~v~l~~~~g-k~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~---~~~~~~~~~~~~~~~~~~~ 174 (197)
+.-.+++|++ .+-||-|+ .|+.|. -..+....+++.+.|+++|-++.=-.... .-...+++++.+++++|+
T Consensus 26 r~g~F~~y~~~~~elvgf~--~CgGCp--g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~gi- 100 (107)
T PF08821_consen 26 RKGAFARYDDEDVELVGFF--TCGGCP--GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFGI- 100 (107)
T ss_pred ccCccccCCCCCeEEEEEe--eCCCCC--hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhCC-
Confidence 3445667775 57777776 455555 66777777788888999999976322211 234588899999666655
Q ss_pred cceE
Q 029204 175 FPIF 178 (197)
Q Consensus 175 fpi~ 178 (197)
+|+
T Consensus 101 -~VV 103 (107)
T PF08821_consen 101 -EVV 103 (107)
T ss_pred -CEe
Confidence 554
No 208
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=85.29 E-value=3.4 Score=30.02 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=34.4
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE 174 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~ 174 (197)
+..|...+|+.|+.....|++ +|+++-.+.+. +++.+.+++++++ +..+..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~-------~gi~~~~idi~----~~~~~~~el~~~~-~~~~~~ 52 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEE-------HQIPFEERNLF----KQPLTKEELKEIL-SLTENG 52 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCceEEEecC----CCcchHHHHHHHH-HHhcCC
Confidence 345678999999866555544 46666666654 3457788999988 555443
No 209
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=85.23 E-value=8.9 Score=28.91 Aligned_cols=58 Identities=14% Similarity=0.059 Sum_probs=44.1
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccce
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPI 177 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi 177 (197)
..|+|||-|--.|-|.|..+-..|.++.++..+- .+|.-+..| ++..|. +-|++..|.
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf-a~Iylvdid-----------eV~~~~-~~~~l~~p~ 79 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF-AVIYLVDID-----------EVPDFV-KMYELYDPP 79 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc-eEEEEEecc-----------hhhhhh-hhhcccCCc
Confidence 4579999999999999999988999999998763 455555443 456666 666777653
No 210
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=85.01 E-value=3.3 Score=30.05 Aligned_cols=59 Identities=15% Similarity=0.309 Sum_probs=40.3
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE 174 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~ 174 (197)
+.++++|+=-.+.||....-+.++++.+++..++ +.+.-|.+- ...++-+.+++++|+.
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~--------~~R~vSn~IAe~~~V~ 76 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE-IPVYYLDVI--------EYRPVSNAIAEDFGVK 76 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGG--------GGHHHHHHHHHHHT--
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEE--------eCchhHHHHHHHhCCC
Confidence 3678888889999999999999999999999876 888888763 4455666666888874
No 211
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=84.22 E-value=2.9 Score=38.72 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=31.3
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 108 gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
++..|-.|...+||+|......++++..+.. ++..-.|...
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~~ 516 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMIDVS 516 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEECc
Confidence 3345667789999999998899999988865 4666666544
No 212
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=83.23 E-value=2.8 Score=28.41 Aligned_cols=57 Identities=16% Similarity=0.333 Sum_probs=39.8
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEecCC
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVSQ 183 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d~d~ 183 (197)
|+.|....|+.|..-...|.++..+. ++++-.|+++ ++++ +. ++|+..-|++.-.+.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~---~~~l~~vDI~--------~d~~---l~-~~Y~~~IPVl~~~~~ 58 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF---PFELEEVDID--------EDPE---LF-EKYGYRIPVLHIDGI 58 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS---TCEEEEEETT--------TTHH---HH-HHSCTSTSEEEETT-
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc---CceEEEEECC--------CCHH---HH-HHhcCCCCEEEEcCc
Confidence 67788899999987766666654443 4788888776 2222 44 789999999987663
No 213
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=82.62 E-value=4 Score=34.44 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=34.5
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 108 gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
+..|||.||-+.++.|...-..|..|+.+|.. +.|+-|...
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~ 186 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRAS 186 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEEC
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEehh
Confidence 34899999999999999999999999999987 899988754
No 214
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=82.52 E-value=3.2 Score=31.04 Aligned_cols=50 Identities=12% Similarity=0.073 Sum_probs=32.5
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCC
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~ 173 (197)
|..|..++|+.|+....-|+ ++|+.+-.+.+. +++.+.+++.+++ ...+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~-------~~gi~~~~idi~----~~~~~~~eL~~~l-~~~~~ 51 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLE-------EHDIPFTERNIF----SSPLTIDEIKQIL-RMTED 51 (131)
T ss_pred EEEEeCCCChHHHHHHHHHH-------HcCCCcEEeecc----CChhhHHHHHHHH-HHhcC
Confidence 45677899999987554443 345666666543 2356778888888 55433
No 215
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=82.33 E-value=7.9 Score=29.22 Aligned_cols=41 Identities=7% Similarity=0.076 Sum_probs=32.9
Q ss_pred EEEEEEecC--CCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 110 VLLIVNVAS--RCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 110 ~vlv~F~a~--wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
..+|+|.++ .+|-+....-.|.++.++|.+..+.++-|+.|
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD 78 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLE 78 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECC
Confidence 566666654 78888888999999999997544899999887
No 216
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=82.29 E-value=4.8 Score=32.52 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=42.0
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceE
Q 029204 110 VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (197)
Q Consensus 110 ~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~ 178 (197)
-.|..|.-..|+.|...+..+.. .+..++|+.|..+ .+++.++.|+ .+++++--.+
T Consensus 110 ~rlalFvkd~C~~C~~~~~~l~a-----~~~~~Diylvgs~-------~dD~~Ir~WA-~~~~Idp~~V 165 (200)
T TIGR03759 110 GRLALFVKDDCVACDARVQRLLA-----DNAPLDLYLVGSQ-------GDDERIRQWA-NRHQIDPAKV 165 (200)
T ss_pred CeEEEEeCCCChHHHHHHHHHhc-----CCCceeEEEecCC-------CCHHHHHHHH-HHcCCCHHHe
Confidence 45666777999999877777643 3456999999754 6889999999 7878765444
No 217
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=82.08 E-value=3.8 Score=29.44 Aligned_cols=49 Identities=6% Similarity=0.114 Sum_probs=32.4
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcC
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK 172 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~ 172 (197)
|..|..++|+.|+....-|++ +|+++--+... +++-+.+++++++ ++.|
T Consensus 1 i~iy~~~~C~~crka~~~L~~-------~~i~~~~~di~----~~p~s~~eL~~~l-~~~g 49 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEA-------RGVAYTFHDYR----KDGLDAATLERWL-AKVG 49 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHH-------cCCCeEEEecc----cCCCCHHHHHHHH-HHhC
Confidence 356778999999975554443 35555555443 3467889999988 5555
No 218
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=80.47 E-value=0.44 Score=39.43 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=31.0
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEE
Q 029204 110 VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAF 147 (197)
Q Consensus 110 ~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~I 147 (197)
--+|.|+++|||-|....+++..+..--.+.|+.+--|
T Consensus 41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~V 78 (248)
T KOG0913|consen 41 EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKV 78 (248)
T ss_pred HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEE
Confidence 56889999999999999999999887766666655444
No 219
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=78.02 E-value=8.9 Score=30.29 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=43.4
Q ss_pred cEEEEEEecCCCCC-cHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccc
Q 029204 109 KVLLIVNVASRCGL-TPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFP 176 (197)
Q Consensus 109 k~vlv~F~a~wC~~-C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fp 176 (197)
|-+|+++=.|--+. -....|++.+..++.+++|+.++-+|-+ +...++.++ ++.|++|-
T Consensus 29 kgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn--------~e~RV~~~~-~~l~v~fi 88 (175)
T COG2179 29 KGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNN--------KESRVARAA-EKLGVPFI 88 (175)
T ss_pred cEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEEeCC--------CHHHHHhhh-hhcCCcee
Confidence 46777776553332 1234799999999999999999999854 677788777 77777764
No 220
>PRK12559 transcriptional regulator Spx; Provisional
Probab=76.89 E-value=8.3 Score=28.86 Aligned_cols=48 Identities=8% Similarity=0.068 Sum_probs=32.4
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhc
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRF 171 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~ 171 (197)
|..|..++|+.|+....-|+ ++|+.+-.+.+. +++-+.+++++++ +..
T Consensus 2 i~iY~~~~C~~crkA~~~L~-------~~gi~~~~~di~----~~~~s~~el~~~l-~~~ 49 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLE-------ENQIDYTEKNIV----SNSMTVDELKSIL-RLT 49 (131)
T ss_pred EEEEeCCCChHHHHHHHHHH-------HcCCCeEEEEee----CCcCCHHHHHHHH-HHc
Confidence 45677899999997554333 345655555543 3467899999998 553
No 221
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.59 E-value=14 Score=28.92 Aligned_cols=79 Identities=23% Similarity=0.254 Sum_probs=46.8
Q ss_pred cCCcEEEEEEecCCCCCcHHHHHHH---HHHHHHHccCCcEEEEEeCCCC-------CCC-CCCCHHHHHHHHHHhcCCc
Q 029204 106 FKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQF-------GGQ-EPGSNPEIKEFACTRFKAE 174 (197)
Q Consensus 106 ~~gk~vlv~F~a~wC~~C~~~~~~L---~~l~~~~~~~gv~vv~Is~d~~-------~~~-~~~~~~~~~~~~~~~~~~~ 174 (197)
-+||.+++.|-...|++|.+.-.++ .++++.+.+. +.++-+..... +.. +..+.++ +.+++++.
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h-f~~~~l~i~~skpv~f~~g~kee~~s~~E----La~kf~vr 114 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH-FSAYYLNISYSKPVLFKVGDKEEKMSTEE----LAQKFAVR 114 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC-eEEEEEEeccCcceEeecCceeeeecHHH----HHHHhccc
Confidence 4689999999999999998765544 3445555443 66665544211 111 1112222 33666776
Q ss_pred -cceEEecCCcceeEE
Q 029204 175 -FPIFDKVSQTYFLML 189 (197)
Q Consensus 175 -fpi~~d~d~~g~~~~ 189 (197)
+|.+.-.|-+|...+
T Consensus 115 stPtfvFfdk~Gk~Il 130 (182)
T COG2143 115 STPTFVFFDKTGKTIL 130 (182)
T ss_pred cCceEEEEcCCCCEEE
Confidence 787766666665544
No 222
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=75.51 E-value=7.6 Score=35.58 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=32.0
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~ 149 (197)
.++.-|..|...+||+|+.....++++..+.. .+..-.|..
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~id~ 155 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMIDG 155 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEEEc
Confidence 34456889999999999998899988888755 377666643
No 223
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=75.05 E-value=9.4 Score=28.60 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=33.3
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE 174 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~ 174 (197)
+..|..++|+.|+.-..-| +++|+++-.+.+. +++-+.+++++++ +..+..
T Consensus 2 i~iY~~~~C~~crkA~~~L-------~~~~i~~~~~d~~----~~~~s~~eL~~~l-~~~~~~ 52 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWL-------NAHQLSYKEQNLG----KEPLTKEEILAIL-TKTENG 52 (132)
T ss_pred EEEEeCCCCHHHHHHHHHH-------HHcCCCeEEEECC----CCCCCHHHHHHHH-HHhCCC
Confidence 3456689999998644333 3346666666554 3467888999988 555543
No 224
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=72.87 E-value=27 Score=26.41 Aligned_cols=43 Identities=16% Similarity=0.010 Sum_probs=35.4
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
+.|+|+|-|-..|-+.|..+=..|.++.++.+.- ..|..+..+
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~-a~IY~vDi~ 61 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF-AVIYLVDID 61 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETT
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc-eEEEEEEcc
Confidence 4689999999999999998888999999988764 667777665
No 225
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=72.86 E-value=7.3 Score=26.67 Aligned_cols=56 Identities=20% Similarity=0.282 Sum_probs=35.9
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEecCCc
Q 029204 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVSQT 184 (197)
Q Consensus 113 v~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d~d~~ 184 (197)
+-|++..||-|..-...|.++.-+| +.|-|. ++...+++|+.- .-..|-+.+...+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~y-----d~VeIt---------~Sm~NlKrFl~l--RDs~~~Fd~vk~~ 60 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDY-----DFVEIT---------ESMANLKRFLHL--RDSRPEFDEVKSN 60 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCc-----eeeehh---------hhhhhHHHHHhh--hccchhHHhhhhc
Confidence 5688999999987666666654444 445553 577889999832 2344555544433
No 226
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=72.08 E-value=7.6 Score=32.54 Aligned_cols=69 Identities=14% Similarity=0.218 Sum_probs=44.2
Q ss_pred cchhccccccceEEEcCCCCeEecCc-cCCcEEEEEEe-cCCCCCcHHHHHHHHHHHHHHccC---CcEEEEEeCC
Q 029204 80 ATAATEKSLYDFTVKDIDGKDVPLSK-FKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQ---GFEILAFPCN 150 (197)
Q Consensus 80 ~~~~~g~~apdf~l~d~~G~~v~l~~-~~gk~vlv~F~-a~wC~~C~~~~~~L~~l~~~~~~~---gv~vv~Is~d 150 (197)
-++.....+|++..++.+|+.+++.+ ++||+.||..+ .-|-..|....-. ...++|.+. .+++|-|++.
T Consensus 93 ~~~~kAlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~--p~~~~~~~~~~~~~q~v~In~~ 166 (252)
T PF05176_consen 93 FKADKALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTS--PFLEDFLQEPYGRVQIVEINLI 166 (252)
T ss_pred CcHHhCCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhh--HHHHHHhhCCCCceEEEEEecc
Confidence 34455667899999999999888866 79997555554 4454444433322 233333322 5899999864
No 227
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=70.79 E-value=7 Score=32.74 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=29.0
Q ss_pred cCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccC
Q 029204 106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ 140 (197)
Q Consensus 106 ~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~ 140 (197)
..||+.|++.-+-|||+|-.+-=.|-....+|..-
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~ 90 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNF 90 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCCe
Confidence 46899999999999999998877777777777653
No 228
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=70.27 E-value=14 Score=30.57 Aligned_cols=64 Identities=16% Similarity=0.156 Sum_probs=40.2
Q ss_pred cEEEEEEecC-CCCCcHHHHHHHHHHHHHHccC-CcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCC
Q 029204 109 KVLLIVNVAS-RCGLTPSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (197)
Q Consensus 109 k~vlv~F~a~-wC~~C~~~~~~L~~l~~~~~~~-gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~ 173 (197)
+.+-|++|.+ -||.|-.--.+|.++..+|.+. .++|..-+........+. -.+.++++.++||.
T Consensus 4 ~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~~v~i~w~pf~l~p~~~~~-g~~~~~~l~~k~g~ 69 (225)
T COG2761 4 MKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEVRVEIRWRPFELDPDLPPE-GLDRKEYLAQKYGI 69 (225)
T ss_pred ceEEEEEEeCCcCchhhcCHHHHHHHHHhcCcceeEEEEecccccCCCCCcc-cccHHHHHHHHhCc
Confidence 4566666644 8999999999999999999854 355554443222222222 34556666666664
No 229
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=69.85 E-value=8.1 Score=29.83 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=30.5
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeC
Q 029204 111 LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (197)
Q Consensus 111 vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~ 149 (197)
.|.+|+-.-||+|....+.|.++.+++.+-.++..-+.+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l 39 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPL 39 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccc
Confidence 467888899999999999999999999443345555544
No 230
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=68.38 E-value=19 Score=32.29 Aligned_cols=32 Identities=6% Similarity=0.118 Sum_probs=22.9
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
|+.|..+|||+|.+...-|++ +|+..-.|.+|
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~-------~gi~~~~idi~ 35 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA-------NDIPFTQISLD 35 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCeEEEECC
Confidence 678889999999865555444 46666667665
No 231
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=67.06 E-value=15 Score=33.65 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=31.8
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~ 149 (197)
.++.-|..|....||+|+.....++++..+.. ++..-.|..
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~id~ 156 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNP--NISHTMIDG 156 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--CceEEEEEc
Confidence 44566889999999999988888888888866 366555643
No 232
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=65.81 E-value=43 Score=26.29 Aligned_cols=84 Identities=14% Similarity=0.203 Sum_probs=48.3
Q ss_pred cceEEEcCCCCeEecCccCC-cEEEEEEecCCC-------CCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCH
Q 029204 89 YDFTVKDIDGKDVPLSKFKG-KVLLIVNVASRC-------GLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 160 (197)
Q Consensus 89 pdf~l~d~~G~~v~l~~~~g-k~vlv~F~a~wC-------~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~ 160 (197)
|..++++...=++...+++| |.||++ -+.| ..-..+++.++++...|.++++.++.=+. +..+.|..
T Consensus 23 Ph~~vptf~~ip~~I~~~~~ikavVlD--KDNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsa---G~~~~D~d 97 (190)
T KOG2961|consen 23 PHVSVPTFRYIPWEILKRKGIKAVVLD--KDNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSA---GLTEYDHD 97 (190)
T ss_pred cccccCccccCCcchhhccCceEEEEc--CCCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCc---CccccCCc
Confidence 44444444444445555555 445443 3333 13467889999999999988766665443 33344555
Q ss_pred HHHHHHHHHhcCCccceEE
Q 029204 161 PEIKEFACTRFKAEFPIFD 179 (197)
Q Consensus 161 ~~~~~~~~~~~~~~fpi~~ 179 (197)
.+..+.++. ++..|++.
T Consensus 98 ~s~Ak~le~--k~gIpVlR 114 (190)
T KOG2961|consen 98 DSKAKALEA--KIGIPVLR 114 (190)
T ss_pred hHHHHHHHH--hhCCceEe
Confidence 555655534 45566664
No 233
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=64.37 E-value=8.8 Score=29.71 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=26.0
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEE
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEIL 145 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv 145 (197)
|.+|+-..||.|..-.+.|.++.++|. .+++|.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~-~~~~v~ 35 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG-GGIEVE 35 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC-CCceEE
Confidence 556777899999999999999999994 234444
No 234
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=63.56 E-value=42 Score=25.41 Aligned_cols=74 Identities=12% Similarity=0.093 Sum_probs=45.0
Q ss_pred CcE-EEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEecCCcce
Q 029204 108 GKV-LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVSQTYF 186 (197)
Q Consensus 108 gk~-vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~ 186 (197)
+++ +++.|..............|+++.++++++ +.++.+..+ ...+ +.+++ .-.+..+|.+.-.+.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~-~~f~~~d~~-------~~~~-~~~~~-~i~~~~~P~~vi~~~~~~ 163 (184)
T PF13848_consen 94 PKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK-INFVYVDAD-------DFPR-LLKYF-GIDEDDLPALVIFDSNKG 163 (184)
T ss_dssp SSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT-SEEEEEETT-------TTHH-HHHHT-TTTTSSSSEEEEEETTTS
T ss_pred CCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe-EEEEEeehH-------HhHH-HHHHc-CCCCccCCEEEEEECCCC
Confidence 445 666666555556677788899999999876 888888765 2233 33333 222235887765554443
Q ss_pred eEEEE
Q 029204 187 LMLII 191 (197)
Q Consensus 187 ~~~ii 191 (197)
..+..
T Consensus 164 ~~~~~ 168 (184)
T PF13848_consen 164 KYYYL 168 (184)
T ss_dssp EEEE-
T ss_pred cEEcC
Confidence 34333
No 235
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=59.97 E-value=11 Score=28.65 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=31.2
Q ss_pred EEEEEecCCCCCcH-------HHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 111 LLIVNVASRCGLTP-------SNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 111 vlv~F~a~wC~~C~-------~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
-=|.|-++.|.+|. ....+++++.++|...++.||-=+.|
T Consensus 31 aevvfs~TeCFVctaagaMDLEnQ~rvk~~aEk~g~enlvVvlG~ae 77 (150)
T PF04723_consen 31 AEVVFSSTECFVCTAAGAMDLENQQRVKDLAEKYGAENLVVVLGAAE 77 (150)
T ss_pred ceEEEEeeeEEEecccccccHHHHHHHHHHHHhcCCccEEEEecCCC
Confidence 34678899999995 46789999999999888766655544
No 236
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=58.30 E-value=56 Score=29.14 Aligned_cols=81 Identities=12% Similarity=0.313 Sum_probs=47.9
Q ss_pred cEEEEEEecCCCCCcHHHHHHHHHHHHHHc----cCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEec---
Q 029204 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYK----TQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV--- 181 (197)
Q Consensus 109 k~vlv~F~a~wC~~C~~~~~~L~~l~~~~~----~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d~--- 181 (197)
++.+|.|.+.. |..+.. .+.++...|. .+|..|.-|++|.+ .....+.++.|. +..++++.+..+.
T Consensus 173 ~~~vi~lvGpt-GvGKTT--T~aKLA~~~~~~~~~~g~~V~lit~Dt~---R~aa~eQL~~~a-~~lgvpv~~~~~~~~l 245 (388)
T PRK12723 173 KKRVFILVGPT-GVGKTT--TIAKLAAIYGINSDDKSLNIKIITIDNY---RIGAKKQIQTYG-DIMGIPVKAIESFKDL 245 (388)
T ss_pred CCeEEEEECCC-CCCHHH--HHHHHHHHHHhhhccCCCeEEEEeccCc---cHHHHHHHHHHh-hcCCcceEeeCcHHHH
Confidence 45566666665 666633 3344444433 34667777777742 345666777777 6667766554442
Q ss_pred -----CCcceeEEEEcCCCC
Q 029204 182 -----SQTYFLMLIIHVEGR 196 (197)
Q Consensus 182 -----d~~g~~~~ii~~~G~ 196 (197)
...+....|||.-|+
T Consensus 246 ~~~L~~~~~~DlVLIDTaGr 265 (388)
T PRK12723 246 KEEITQSKDFDLVLVDTIGK 265 (388)
T ss_pred HHHHHHhCCCCEEEEcCCCC
Confidence 234556669998886
No 237
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=57.69 E-value=31 Score=27.07 Aligned_cols=88 Identities=16% Similarity=0.094 Sum_probs=48.9
Q ss_pred cccccceEEEcCCCCeEec--CccCC-cEEEEEEecCCCCCcH-HHHHHHHHHHHHHccCCc--EEEEEeCCCCCCCCCC
Q 029204 85 EKSLYDFTVKDIDGKDVPL--SKFKG-KVLLIVNVASRCGLTP-SNYSELSHLYEKYKTQGF--EILAFPCNQFGGQEPG 158 (197)
Q Consensus 85 g~~apdf~l~d~~G~~v~l--~~~~g-k~vlv~F~a~wC~~C~-~~~~~L~~l~~~~~~~gv--~vv~Is~d~~~~~~~~ 158 (197)
.-..|++.++++..=++.. -.-.| |.+|+++=.+-+++=. ...+++.+..++.++.+. .|+-||-+. +..+..
T Consensus 15 ~l~~P~l~V~si~~I~~~~~~Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsa-Gs~~d~ 93 (168)
T PF09419_consen 15 SLLLPHLYVPSIRDIDFEANHLKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSA-GSSDDP 93 (168)
T ss_pred cccCCCEEcCChhhCCcchhhhhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCC-CcccCc
Confidence 3456777777776554443 22344 6888888877775433 334667776766665543 366666431 222211
Q ss_pred CHHHHHHHHHHhcCCc
Q 029204 159 SNPEIKEFACTRFKAE 174 (197)
Q Consensus 159 ~~~~~~~~~~~~~~~~ 174 (197)
+.++++.+. +..|++
T Consensus 94 ~~~~a~~~~-~~lgIp 108 (168)
T PF09419_consen 94 DGERAEALE-KALGIP 108 (168)
T ss_pred cHHHHHHHH-HhhCCc
Confidence 334444443 665654
No 238
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=57.63 E-value=28 Score=32.25 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=28.2
Q ss_pred ccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEe
Q 029204 105 KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (197)
Q Consensus 105 ~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is 148 (197)
++++++.|+.|+...|..|.....-|+++. +..++ +.+..+.
T Consensus 363 ~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~-i~~~~~~ 404 (555)
T TIGR03143 363 RLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEK-LNSEAVN 404 (555)
T ss_pred hcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCc-EEEEEec
Confidence 456667888999888999986666666655 44444 5554443
No 239
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=55.33 E-value=60 Score=25.13 Aligned_cols=32 Identities=13% Similarity=0.085 Sum_probs=24.2
Q ss_pred EEecCCCCCcHHHHHHHHHHHHHHccC-CcEEE
Q 029204 114 VNVASRCGLTPSNYSELSHLYEKYKTQ-GFEIL 145 (197)
Q Consensus 114 ~F~a~wC~~C~~~~~~L~~l~~~~~~~-gv~vv 145 (197)
+|+-.-||+|..-.+.|.++.++|+.+ +++|.
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~ 35 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELGDEVDVEIE 35 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCCCCCceEEE
Confidence 344568999999999999999999632 35444
No 240
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=54.10 E-value=69 Score=24.59 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=24.0
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 111 LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 111 vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
-+++|..+.|+=|..-+..| +.+|++|=.+..|
T Consensus 27 ~~~vyksPnCGCC~~w~~~m-------k~~Gf~Vk~~~~~ 59 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHM-------KANGFEVKVVETD 59 (149)
T ss_pred eEEEEeCCCCccHHHHHHHH-------HhCCcEEEEeecC
Confidence 46778899999998555444 4567888777655
No 241
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.39 E-value=61 Score=29.33 Aligned_cols=87 Identities=23% Similarity=0.319 Sum_probs=55.0
Q ss_pred cCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceE-Eec
Q 029204 103 LSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF-DKV 181 (197)
Q Consensus 103 l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~-~d~ 181 (197)
+.--++|+-||.|.+-.-..= .....++.-.|+.+|..+..|..|.|. .+--+++++.+ .+.+++|-.- .+.
T Consensus 94 ~~~~K~kpsVimfVGLqG~GK---TTtc~KlA~y~kkkG~K~~LvcaDTFR---agAfDQLkqnA-~k~~iP~ygsyte~ 166 (483)
T KOG0780|consen 94 LQPKKGKPSVIMFVGLQGSGK---TTTCTKLAYYYKKKGYKVALVCADTFR---AGAFDQLKQNA-TKARVPFYGSYTEA 166 (483)
T ss_pred cccccCCCcEEEEEeccCCCc---ceeHHHHHHHHHhcCCceeEEeecccc---cchHHHHHHHh-HhhCCeeEeccccc
Confidence 334478899999986543221 122345666778889999999988763 35667777777 6656654221 111
Q ss_pred C-------------CcceeEEEEcCCCC
Q 029204 182 S-------------QTYFLMLIIHVEGR 196 (197)
Q Consensus 182 d-------------~~g~~~~ii~~~G~ 196 (197)
| -+++...|+|.+||
T Consensus 167 dpv~ia~egv~~fKke~fdvIIvDTSGR 194 (483)
T KOG0780|consen 167 DPVKIASEGVDRFKKENFDVIIVDTSGR 194 (483)
T ss_pred chHHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 1 23446669999997
No 242
>PF14062 DUF4253: Domain of unknown function (DUF4253)
Probab=52.29 E-value=29 Score=25.24 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=36.0
Q ss_pred CCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCC---CCCCCCCHHHHHHHHHHhcC
Q 029204 118 SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQF---GGQEPGSNPEIKEFACTRFK 172 (197)
Q Consensus 118 ~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~---~~~~~~~~~~~~~~~~~~~~ 172 (197)
..|+--...+..|+..+++| |+++++|+.|.+ ....+.+.+++.+++.+.|.
T Consensus 24 N~~~~~~~~~a~lr~W~er~---ga~i~~i~~d~le~~v~~pP~~~~ea~~lA~E~y~ 78 (111)
T PF14062_consen 24 NYCPDTADIIAVLRYWEERY---GAEIVGIGFDTLELSVARPPQTPEEAEALAAEHYA 78 (111)
T ss_pred CCCCCHHHHHHHHHHHHHHh---CEEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35777777888888888888 578888876544 22334566888888855443
No 243
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=52.28 E-value=62 Score=24.75 Aligned_cols=32 Identities=6% Similarity=-0.082 Sum_probs=19.0
Q ss_pred EEEEecC------CCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 112 LIVNVAS------RCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 112 lv~F~a~------wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
||.|..+ +|+.|......|++ .++.+--++++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~-------~~V~~~e~DVs 39 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILES-------FRVKFDERDVS 39 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHH-------CCCcEEEEECC
Confidence 3445556 99999755544443 24556556554
No 244
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=50.69 E-value=1.1e+02 Score=27.74 Aligned_cols=83 Identities=24% Similarity=0.305 Sum_probs=45.8
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEe-cCC--
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDK-VSQ-- 183 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d-~d~-- 183 (197)
++++.+|.|.+. -|..+ .....++...+..+|..|+-|++|.+ .+...+.++.+. ++.+++|-...+ .|.
T Consensus 97 ~~~~~vi~lvG~-~GvGK--TTtaaKLA~~l~~~G~kV~lV~~D~~---R~aA~eQLk~~a-~~~~vp~~~~~~~~dp~~ 169 (429)
T TIGR01425 97 KGKQNVIMFVGL-QGSGK--TTTCTKLAYYYQRKGFKPCLVCADTF---RAGAFDQLKQNA-TKARIPFYGSYTESDPVK 169 (429)
T ss_pred CCCCeEEEEECC-CCCCH--HHHHHHHHHHHHHCCCCEEEEcCccc---chhHHHHHHHHh-hccCCeEEeecCCCCHHH
Confidence 355777777753 23333 22334444455566778888888742 234455556566 555544322111 121
Q ss_pred -----------cceeEEEEcCCCC
Q 029204 184 -----------TYFLMLIIHVEGR 196 (197)
Q Consensus 184 -----------~g~~~~ii~~~G~ 196 (197)
+++...|||..|+
T Consensus 170 i~~~~l~~~~~~~~DvViIDTaGr 193 (429)
T TIGR01425 170 IASEGVEKFKKENFDIIIVDTSGR 193 (429)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCC
Confidence 2567779999887
No 245
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=50.45 E-value=33 Score=32.80 Aligned_cols=70 Identities=10% Similarity=0.125 Sum_probs=41.4
Q ss_pred cCCcEEEEEEecCCCCCcHHHHH------HHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-------HhcC
Q 029204 106 FKGKVLLIVNVASRCGLTPSNYS------ELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFAC-------TRFK 172 (197)
Q Consensus 106 ~~gk~vlv~F~a~wC~~C~~~~~------~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~-------~~~~ 172 (197)
-++|||+|..-++||-.|.-+.. ++.++.++ .+|.|-+|. +...++.+... -.-|
T Consensus 41 ~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~------~FV~IKVDR------EERPDvD~~Ym~~~q~~tG~GG 108 (667)
T COG1331 41 EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE------NFVPVKVDR------EERPDVDSLYMNASQAITGQGG 108 (667)
T ss_pred HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh------CceeeeECh------hhccCHHHHHHHHHHHhccCCC
Confidence 36899999999999999986543 34444333 356666662 23333333321 1336
Q ss_pred CccceEEecCCcceeEE
Q 029204 173 AEFPIFDKVSQTYFLML 189 (197)
Q Consensus 173 ~~fpi~~d~d~~g~~~~ 189 (197)
++..|+--+| +.++|
T Consensus 109 WPLtVfLTPd--~kPFf 123 (667)
T COG1331 109 WPLTVFLTPD--GKPFF 123 (667)
T ss_pred CceeEEECCC--Cceee
Confidence 6677777675 44444
No 246
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=50.27 E-value=69 Score=20.87 Aligned_cols=20 Identities=5% Similarity=-0.165 Sum_probs=12.9
Q ss_pred EEEecCCCCCcHHHHHHHHH
Q 029204 113 IVNVASRCGLTPSNYSELSH 132 (197)
Q Consensus 113 v~F~a~wC~~C~~~~~~L~~ 132 (197)
.-|...+||.|.+..-.|.+
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~ 22 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTE 22 (77)
T ss_pred eEecCCCCchHHHHHHHHHH
Confidence 34556799999865544443
No 247
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=49.66 E-value=22 Score=27.14 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=29.5
Q ss_pred EEEEEecCCCCCcH-------HHHHHHHHHHHHHccCCcEEEEEe
Q 029204 111 LLIVNVASRCGLTP-------SNYSELSHLYEKYKTQGFEILAFP 148 (197)
Q Consensus 111 vlv~F~a~wC~~C~-------~~~~~L~~l~~~~~~~gv~vv~Is 148 (197)
.=|.|-++-|.+|. ....+++++.++|...++.||-=.
T Consensus 32 aevvfs~TECfVctaAGAMDLEnQ~Rvk~~aEk~g~eNvvVllGa 76 (154)
T PRK13265 32 AEVVFSSTECFVUTAAGAMDLENQKRVKDLAEKFGAENVVVILGA 76 (154)
T ss_pred ceEEEEeeeEEEeecccccchHHHHHHHHHHHhcCCccEEEEecc
Confidence 34678899999995 457899999999998886665444
No 248
>COG1697 DNA topoisomerase VI, subunit A [DNA replication, recombination, and repair]
Probab=48.85 E-value=1e+02 Score=27.24 Aligned_cols=110 Identities=11% Similarity=0.034 Sum_probs=69.3
Q ss_pred hccccccceEEEcCCCCeEecCccCCcE-------EEEEEe-cCCCC-CcHHHHHHHHHHHHHHccCCcEEEEEeCCCCC
Q 029204 83 ATEKSLYDFTVKDIDGKDVPLSKFKGKV-------LLIVNV-ASRCG-LTPSNYSELSHLYEKYKTQGFEILAFPCNQFG 153 (197)
Q Consensus 83 ~~g~~apdf~l~d~~G~~v~l~~~~gk~-------vlv~F~-a~wC~-~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~ 153 (197)
..|...-++.+..-.|.++..+++.+.+ -.|.|. .+-|- .|.+-...+++|.++.-.+....+-|+.-
T Consensus 139 ekG~V~G~l~I~~~g~~~i~~sk~G~~~y~Ip~~~d~I~f~~~da~~VlvVEk~avf~rLv~e~~~~k~nailVt~K--- 215 (356)
T COG1697 139 EKGLVYGPLRIREEGEDEIDASKLGGGGYLIPPDVDVIEFVDTDAKFVLVVEKDAVFQRLVEEGFWEKENAILVTLK--- 215 (356)
T ss_pred cCceEEcceEEEecCCcEEEeeecCCCCCcCCCChhheeeccccceEEEEEechHHHHHHHHhhhhhhcCeEEEecC---
Confidence 4555555777777566677777754432 345555 34454 46666778888888766555667777654
Q ss_pred CCCCCCHHHHHHHHHHhcCCccceEEecCCcceeEEEEcCCC
Q 029204 154 GQEPGSNPEIKEFACTRFKAEFPIFDKVSQTYFLMLIIHVEG 195 (197)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~~~ii~~~G 195 (197)
++.........+-+.++.+++.-++.|.|-.|+..|.+-+.|
T Consensus 216 GqP~raTRrflkrL~eel~lpv~vftDgDPyG~~Iy~~~k~G 257 (356)
T COG1697 216 GQPDRATRRFLKRLNEELDLPVYVFTDGDPYGWYIYSVYKYG 257 (356)
T ss_pred CCccHHHHHHHHHHHHHhCCCEEEEecCCCCEEEEEEEEEec
Confidence 222222222333334667888889999999999999766655
No 249
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=48.72 E-value=45 Score=26.94 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=31.8
Q ss_pred HHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEecCCcce
Q 029204 130 LSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVSQTYF 186 (197)
Q Consensus 130 L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~ 186 (197)
|.+|..+ +.++.+|-|.- .+..+..+.+ ++||+.|-++.|.+....
T Consensus 24 lk~L~k~--g~~l~~i~i~~--------~~lk~F~k~A-kKyGV~yav~kdk~~~~~ 69 (204)
T PF12687_consen 24 LKKLLKQ--GKGLKNIEITD--------EDLKEFKKEA-KKYGVDYAVKKDKSTGPG 69 (204)
T ss_pred HHHHHhc--CCCceEEecCH--------hhHHHHHHHH-HHcCCceEEeeccCCCCC
Confidence 3444443 34578888852 4667777777 899999999998765543
No 250
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=48.66 E-value=24 Score=26.45 Aligned_cols=42 Identities=19% Similarity=0.381 Sum_probs=31.2
Q ss_pred HHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEecC
Q 029204 132 HLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVS 182 (197)
Q Consensus 132 ~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d~d 182 (197)
++.++++++ ++|++++.+ .+.+.+.+-+ ++|++.|-++.|.+
T Consensus 16 dVi~~~~d~-f~v~~Lsa~-------~n~~~L~~q~-~~f~p~~v~i~~~~ 57 (129)
T PF02670_consen 16 DVIRKHPDK-FEVVALSAG-------SNIEKLAEQA-REFKPKYVVIADEE 57 (129)
T ss_dssp HHHHHCTTT-EEEEEEEES-------STHHHHHHHH-HHHT-SEEEESSHH
T ss_pred HHHHhCCCc-eEEEEEEcC-------CCHHHHHHHH-HHhCCCEEEEcCHH
Confidence 455666765 999999986 5788888887 88888888776653
No 251
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=48.42 E-value=67 Score=20.13 Aligned_cols=31 Identities=3% Similarity=-0.135 Sum_probs=18.6
Q ss_pred EEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeC
Q 029204 114 VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (197)
Q Consensus 114 ~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~ 149 (197)
.|...+|+.|.+..-.|.+. +...+++-|+.
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~-----~l~~~~~~v~~ 33 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEK-----GIDVPLVTVDL 33 (74)
T ss_pred EEeCCCCcchHHHHHHHHHc-----CCCceEEEeec
Confidence 45678999998665555443 22345555543
No 252
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=46.68 E-value=1.2e+02 Score=22.40 Aligned_cols=57 Identities=9% Similarity=0.091 Sum_probs=44.8
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHHHHHccC-CcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc
Q 029204 110 VLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE 174 (197)
Q Consensus 110 ~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~-gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~ 174 (197)
..|+.|--.--+--...+..|+++++++.+. ++.||-|.-|+| .-+..|..+-|++.
T Consensus 22 ~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~F--------Pllv~yWektF~ID 79 (120)
T cd03074 22 IHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDF--------PLLVPYWEKTFGID 79 (120)
T ss_pred ceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccC--------chhhHHHHhhcCcc
Confidence 6777887778888889999999999999875 599999987654 44677775666654
No 253
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=45.97 E-value=28 Score=27.19 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=25.9
Q ss_pred EEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEe
Q 029204 114 VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (197)
Q Consensus 114 ~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is 148 (197)
.|.-+.|+.|-..-|.|.++..+|+++ +.+--|.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~-i~~~~i~ 35 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK-IEFRFIP 35 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT-EEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc-EEEEEEE
Confidence 477899999999999999999999987 6555554
No 254
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=44.66 E-value=40 Score=28.24 Aligned_cols=59 Identities=22% Similarity=0.379 Sum_probs=42.1
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEe
Q 029204 111 LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDK 180 (197)
Q Consensus 111 vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d 180 (197)
+|+ +-+..||-. .-++.+..+|.++|+.+|-|.-+++ .+..++.+.+ ......|-++.|
T Consensus 55 vLL-~G~rGtGKS----SlVkall~~y~~~GLRlIev~k~~L-----~~l~~l~~~l-~~~~~kFIlf~D 113 (249)
T PF05673_consen 55 VLL-WGARGTGKS----SLVKALLNEYADQGLRLIEVSKEDL-----GDLPELLDLL-RDRPYKFILFCD 113 (249)
T ss_pred eEE-ecCCCCCHH----HHHHHHHHHHhhcCceEEEECHHHh-----ccHHHHHHHH-hcCCCCEEEEec
Confidence 444 345567653 2456678889999999999987653 6777778787 555778888876
No 255
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=43.72 E-value=71 Score=19.12 Aligned_cols=53 Identities=11% Similarity=0.137 Sum_probs=27.6
Q ss_pred EEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhc-CCccceEEec
Q 029204 114 VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRF-KAEFPIFDKV 181 (197)
Q Consensus 114 ~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~-~~~fpi~~d~ 181 (197)
.|...+||.|.+..-.|+.. +...+++-+..+. +..+ ++. +.. ....|++.+.
T Consensus 3 ly~~~~~~~~~~~~~~l~~~-----~i~~~~~~~~~~~------~~~~---~~~-~~~~~~~~P~l~~~ 56 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEK-----GLPYELVPVDLGE------GEQE---EFL-ALNPLGKVPVLEDG 56 (71)
T ss_pred EEeCCCCccHHHHHHHHHHc-----CCCcEEEEeCCCC------CCCH---HHH-hcCCCCCCCEEEEC
Confidence 35567899998555444433 2235555554331 1111 333 222 3368888765
No 256
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=43.30 E-value=51 Score=25.61 Aligned_cols=77 Identities=22% Similarity=0.342 Sum_probs=48.8
Q ss_pred EEEcCCCCeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhc
Q 029204 92 TVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRF 171 (197)
Q Consensus 92 ~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~ 171 (197)
.+-|+||. ++.+|..|..+-+ .-.+|+ .+-..+++.++.++|..|+-++.-. .......++|+ ++.
T Consensus 2 VvsDIDGT-iT~SD~~G~i~~~-~G~d~~------h~g~~~l~~~i~~~GY~ilYlTaRp-----~~qa~~Tr~~L-~~~ 67 (157)
T PF08235_consen 2 VVSDIDGT-ITKSDVLGHILPI-LGKDWT------HPGAAELYRKIADNGYKILYLTARP-----IGQANRTRSWL-AQH 67 (157)
T ss_pred EEEeccCC-cCccchhhhhhhc-cCchhh------hhcHHHHHHHHHHCCeEEEEECcCc-----HHHHHHHHHHH-HHH
Confidence 46688887 6667777764322 223454 5667789999999999999998642 13344556677 443
Q ss_pred -----CCc-cceEEecC
Q 029204 172 -----KAE-FPIFDKVS 182 (197)
Q Consensus 172 -----~~~-fpi~~d~d 182 (197)
+++ -|++.-++
T Consensus 68 ~q~~~~lP~Gpv~~sP~ 84 (157)
T PF08235_consen 68 QQQGHNLPDGPVLLSPD 84 (157)
T ss_pred HhCCccCCCCCEEECCc
Confidence 333 45665543
No 257
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=42.58 E-value=96 Score=20.31 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=27.7
Q ss_pred CCCeEecCccCCcEEEEEEecC--CCCCcHHHH-HHHHHHHHHHccCCcEEEE
Q 029204 97 DGKDVPLSKFKGKVLLIVNVAS--RCGLTPSNY-SELSHLYEKYKTQGFEILA 146 (197)
Q Consensus 97 ~G~~v~l~~~~gk~vlv~F~a~--wC~~C~~~~-~~L~~l~~~~~~~gv~vv~ 146 (197)
+|..+.+-++++..+.|.|-+. .|+.....+ ..+++...++-..-.+|+.
T Consensus 15 dGGdv~lv~v~~~~V~V~l~GaC~gC~~s~~Tl~~~Ie~~L~~~~~~v~~V~~ 67 (68)
T PF01106_consen 15 DGGDVELVDVDDGVVYVRLTGACSGCPSSDMTLKQGIEQALREAVPEVKRVVP 67 (68)
T ss_dssp TTEEEEEEEEETTEEEEEEESSCCSSCCHHHHHHHHHHHHHHHHSTT-SEEEE
T ss_pred cCCcEEEEEecCCEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCCceEEE
Confidence 6778888888887777777633 455444444 3444433333222245543
No 258
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=41.05 E-value=85 Score=22.58 Aligned_cols=50 Identities=14% Similarity=0.284 Sum_probs=33.0
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc
Q 029204 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE 174 (197)
Q Consensus 113 v~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~ 174 (197)
..|....|.-|++...-|++ .|+++..++.- +++-+.+++++++ +..|..
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~-------~~i~~~~~di~----~~p~t~~el~~~l-~~~g~~ 51 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLED-------KGIEPEVVKYL----KNPPTKSELEAIF-AKLGLT 51 (114)
T ss_pred EEEECCCCHHHHHHHHHHHH-------CCCCeEEEecc----CCCcCHHHHHHHH-HHcCCc
Confidence 45667899999876655544 34555555543 3467889999988 565643
No 259
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=40.78 E-value=30 Score=25.79 Aligned_cols=54 Identities=24% Similarity=0.243 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEE
Q 029204 124 PSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFD 179 (197)
Q Consensus 124 ~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~ 179 (197)
-.++-++....+.++++|++|.-.++.+-. +.-..++.+++++ ++.|.. .|+..
T Consensus 23 d~eL~~~a~~~~~Lk~~gv~v~RyNL~~~P-~aF~~n~~V~~~L-~~~G~e~LPitl 77 (123)
T PF06953_consen 23 DPELVRFAADLDWLKEQGVEVERYNLAQNP-QAFVENPEVNQLL-QTEGAEALPITL 77 (123)
T ss_dssp -HHHHHHHHHHHHHHHTT-EEEEEETTT-T-THHHHSHHHHHHH-HHH-GGG-SEEE
T ss_pred CHHHHHHHHHHHHHHhCCceEEEEccccCH-HHHHhCHHHHHHH-HHcCcccCCEEE
Confidence 467889999999999999999999886311 1112356678888 555775 88653
No 260
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=40.30 E-value=26 Score=28.61 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=35.7
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~ 149 (197)
+|-+|||..|...-|.|......|+.+.-+|.+ +.+|-|..
T Consensus 110 ~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--iKFVki~a 150 (240)
T KOG3170|consen 110 EGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--IKFVKIPA 150 (240)
T ss_pred CccEEEEEeeccccHHHHHHHHHHHHHhhcCCc--ceEEeccc
Confidence 455899999999999999999999999999987 77777754
No 261
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=39.76 E-value=1.5e+02 Score=25.83 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=29.2
Q ss_pred CccCCcEEEEEEecC----CCCCcHHHHHHHHHHHHHHccC
Q 029204 104 SKFKGKVLLIVNVAS----RCGLTPSNYSELSHLYEKYKTQ 140 (197)
Q Consensus 104 ~~~~gk~vlv~F~a~----wC~~C~~~~~~L~~l~~~~~~~ 140 (197)
...++..+||.|.|. .|..|+.+..+.+-+.+-+...
T Consensus 56 ~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~ 96 (331)
T KOG2603|consen 56 PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYN 96 (331)
T ss_pred CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhcc
Confidence 455666788888876 8999999999999888877543
No 262
>PRK10178 D-alanyl-D-alanine dipeptidase; Provisional
Probab=39.35 E-value=1.8e+02 Score=23.28 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=34.9
Q ss_pred CccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 104 ~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
+.+-|++| +-+..|-..+.....|.+.+++.+.+|+.++-..+-
T Consensus 27 ~NF~g~~i---Y~~~~c~l~~~aA~aL~~a~~~l~~~G~~L~I~D~y 70 (184)
T PRK10178 27 DNLTGKPI---YREARCLLHKDAEAALRKAVSIAQLAGLTLRIYDAY 70 (184)
T ss_pred CCcCCCcc---ccCCeEEECHHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 34678777 336677777888889999999999999999988764
No 263
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=38.82 E-value=1.2e+02 Score=27.31 Aligned_cols=53 Identities=8% Similarity=0.086 Sum_probs=37.9
Q ss_pred CcEEEEEeCCC---CC--CCCCCCHHHHHHHHHHhcCCccceEEecCCcceeEEEEcCCCC
Q 029204 141 GFEILAFPCNQ---FG--GQEPGSNPEIKEFACTRFKAEFPIFDKVSQTYFLMLIIHVEGR 196 (197)
Q Consensus 141 gv~vv~Is~d~---~~--~~~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~~~ii~~~G~ 196 (197)
|++++.++.+. +. ..++...+++++.+ ++.+.++-+..|.| +-++.++|.+|+
T Consensus 199 G~~v~~i~~~~dg~~~~~~~~~~~~e~l~~~v-~~~~adlGia~DgD--gDR~~vvd~~G~ 256 (446)
T PRK14324 199 GADVIVINDEPNGFNINENCGALHPENLAQEV-KRYRADIGFAFDGD--ADRLVVVDEKGE 256 (446)
T ss_pred CCeEEEECCCCCCCCCCCCCCCCCHHHHHHHH-HhCCCCEEEEECCC--CceEEEECCCCC
Confidence 67888887542 11 11234788899888 77889988888776 667788888885
No 264
>PRK12359 flavodoxin FldB; Provisional
Probab=37.18 E-value=1e+02 Score=24.10 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=11.1
Q ss_pred EEEEeCCCCCCCCCCCHHHHHHHH
Q 029204 144 ILAFPCNQFGGQEPGSNPEIKEFA 167 (197)
Q Consensus 144 vv~Is~d~~~~~~~~~~~~~~~~~ 167 (197)
+||+.+|. .+|+..+.+++.+|+
T Consensus 139 f~gl~lD~-~nq~~~t~~ri~~W~ 161 (172)
T PRK12359 139 FVGLALDE-VNQYDLSDERIQQWC 161 (172)
T ss_pred EEEEEEcC-CCchhhhHHHHHHHH
Confidence 44444443 233344555555555
No 265
>COG5418 Predicted secreted protein [Function unknown]
Probab=36.90 E-value=86 Score=24.24 Aligned_cols=74 Identities=14% Similarity=0.195 Sum_probs=45.1
Q ss_pred cccceEEEcCCCCeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEe------CCCCCCCCCCCH
Q 029204 87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP------CNQFGGQEPGSN 160 (197)
Q Consensus 87 ~apdf~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is------~d~~~~~~~~~~ 160 (197)
..|+|.+...+-...+-+.|.. -..=.+|+..+.-|.+..++++..|+.++.|- |+-+.+...|.+
T Consensus 51 PCPE~~yLg~~R~~~tke~~d~--------~~yRr~c~ki~~pi~~~l~e~k~d~~kii~IGV~~SpTCgVy~tt~~~~~ 122 (164)
T COG5418 51 PCPEFEYLGWPRPPMTKEVFDH--------PGYRRVCRKIADPIGRVLEEEKPDGIKIIFIGVKGSPTCGVYTTTSSDPD 122 (164)
T ss_pred cCchHHhhCCCCCCcCHHHhcc--------hhHHHHHHHHHHHHHHHHHHhCcCCceEEEEecCCCCccceEeccCCCCc
Confidence 3566666666555555444432 12334799999999999999999986655553 222222223344
Q ss_pred HHHHHHHH
Q 029204 161 PEIKEFAC 168 (197)
Q Consensus 161 ~~~~~~~~ 168 (197)
..+++|..
T Consensus 123 ~k~~EFf~ 130 (164)
T COG5418 123 GKSKEFFY 130 (164)
T ss_pred hhHHHHHH
Confidence 67788874
No 266
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=36.80 E-value=2.3e+02 Score=25.88 Aligned_cols=83 Identities=17% Similarity=0.265 Sum_probs=47.4
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEEecC---
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFDKVS--- 182 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~d~d--- 182 (197)
..+|.+|.+.+-.-..=....-.|..++.+ +|..++-|++|. ..+.--++++... ++.+++ |+.-...+
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk---~~~kvllVaaD~---~RpAA~eQL~~La-~q~~v~~f~~~~~~~Pv~ 169 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKK---KGKKVLLVAADT---YRPAAIEQLKQLA-EQVGVPFFGSGTEKDPVE 169 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHH---cCCceEEEeccc---CChHHHHHHHHHH-HHcCCceecCCCCCCHHH
Confidence 556778877766544333334445554444 566778888774 3456666666666 666665 33311111
Q ss_pred ----------CcceeEEEEcCCCC
Q 029204 183 ----------QTYFLMLIIHVEGR 196 (197)
Q Consensus 183 ----------~~g~~~~ii~~~G~ 196 (197)
.+++...|||..||
T Consensus 170 Iak~al~~ak~~~~DvvIvDTAGR 193 (451)
T COG0541 170 IAKAALEKAKEEGYDVVIVDTAGR 193 (451)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCc
Confidence 12235558998887
No 267
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=36.20 E-value=1.2e+02 Score=19.59 Aligned_cols=58 Identities=21% Similarity=0.298 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEecCCcceeEE
Q 029204 123 TPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVSQTYFLML 189 (197)
Q Consensus 123 C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~~~ 189 (197)
|..-+-.+++..++.+. | +++-|-.|+ +.+.+++.+|+ ++.|.++-...+ +.+.+.++
T Consensus 9 CP~P~i~~k~~l~~l~~-G-~~l~V~~dd-----~~s~~di~~~~-~~~g~~~~~~~~-~~~~~~~~ 66 (69)
T cd03423 9 CPEPVMMLHKKVRKMKP-G-DTLLVLATD-----PSTTRDIPKFC-TFLGHELLAQET-EDEPYRYL 66 (69)
T ss_pred CCHHHHHHHHHHHcCCC-C-CEEEEEeCC-----CchHHHHHHHH-HHcCCEEEEEEE-cCCEEEEE
Confidence 44334444555555543 2 233333332 57899999999 776777655444 33334443
No 268
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=36.06 E-value=1.1e+02 Score=22.16 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=30.3
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcC
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK 172 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~ 172 (197)
|..|..+.|.-|+.-..-|++ +|+++-.+..- +++-+.+++++++ ++.|
T Consensus 2 i~iy~~p~C~~crkA~~~L~~-------~gi~~~~~d~~----~~p~s~~eL~~~l-~~~g 50 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEA-------AGHEVEVRDLL----TEPWTAETLRPFF-GDLP 50 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cCCCcEEeehh----cCCCCHHHHHHHH-HHcC
Confidence 345678899999965544333 34444444332 2356888999988 5544
No 269
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=35.75 E-value=33 Score=24.31 Aligned_cols=31 Identities=10% Similarity=0.079 Sum_probs=22.6
Q ss_pred EecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEe
Q 029204 115 NVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (197)
Q Consensus 115 F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is 148 (197)
||-.+||.|..+...+.+. .- ...++++.+.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~--d~-~~~l~~~~~~ 32 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR--DR-GGRLRFVDIQ 32 (114)
T ss_pred EECCCCHhHHHHHHHHHhc--CC-CCCEEEEECC
Confidence 5678999999988888777 11 1238888873
No 270
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=35.24 E-value=2.3e+02 Score=25.20 Aligned_cols=53 Identities=9% Similarity=0.022 Sum_probs=37.6
Q ss_pred CcEEEEEeCCC---CCCC--CCCCHHHHHHHHHHhcCCccceEEecCCcceeEEEEcCCCC
Q 029204 141 GFEILAFPCNQ---FGGQ--EPGSNPEIKEFACTRFKAEFPIFDKVSQTYFLMLIIHVEGR 196 (197)
Q Consensus 141 gv~vv~Is~d~---~~~~--~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~~~ii~~~G~ 196 (197)
|++++.++.+. +..+ .++..+++.+.+ ++.+..+-+..|.| +-++.++|.+|+
T Consensus 193 g~~v~~in~~~dg~~~~~~~~~~~~~~l~~~v-~~~~adlGia~DgD--gDR~~~vd~~G~ 250 (434)
T cd05802 193 GAEVIVINNAPDGLNINVNCGSTHPESLQKAV-LENGADLGIAFDGD--ADRVIAVDEKGN 250 (434)
T ss_pred CCeEEEecCCCCCCCCCCCCCccCHHHHHHHH-HhcCCCEEEEEcCC--CceEEEECCCCC
Confidence 78888887641 1111 136788888888 77788888888776 666678888885
No 271
>PRK10853 putative reductase; Provisional
Probab=35.06 E-value=87 Score=22.85 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=32.8
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE 174 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~ 174 (197)
+..|....|.-|+.-+.-|++ +|+++-.+..- +++-+.+++++++ ++.|++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~-------~~i~~~~~d~~----k~p~s~~eL~~~l-~~~g~~ 52 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEA-------QGIDYRFHDYR----VDGLDSELLQGFI-DELGWE 52 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHH-------cCCCcEEeehc----cCCcCHHHHHHHH-HHcCHH
Confidence 345667899999876655543 25555555432 3356888999998 565643
No 272
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=34.60 E-value=41 Score=26.81 Aligned_cols=64 Identities=16% Similarity=0.349 Sum_probs=36.9
Q ss_pred HHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEec--------------CCcceeEEEEcCC
Q 029204 129 ELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV--------------SQTYFLMLIIHVE 194 (197)
Q Consensus 129 ~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d~--------------d~~g~~~~ii~~~ 194 (197)
.+.++...|..+|-.|..|+.|.+ ..+..++++.|+ +..++++-..... +.++....+||..
T Consensus 17 t~aKLAa~~~~~~~~v~lis~D~~---R~ga~eQL~~~a-~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 17 TIAKLAARLKLKGKKVALISADTY---RIGAVEQLKTYA-EILGVPFYVARTESDPAEIAREALEKFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHHHHHHHHTT--EEEEEESTS---STHHHHHHHHHH-HHHTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE-
T ss_pred HHHHHHHHHhhccccceeecCCCC---CccHHHHHHHHH-HHhccccchhhcchhhHHHHHHHHHHHhhcCCCEEEEecC
Confidence 344555555555667777777743 456788889898 7767664322211 1123567799988
Q ss_pred CC
Q 029204 195 GR 196 (197)
Q Consensus 195 G~ 196 (197)
|+
T Consensus 93 Gr 94 (196)
T PF00448_consen 93 GR 94 (196)
T ss_dssp SS
T ss_pred Cc
Confidence 86
No 273
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=34.58 E-value=44 Score=21.34 Aligned_cols=54 Identities=13% Similarity=0.093 Sum_probs=29.0
Q ss_pred EEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEecC
Q 029204 114 VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVS 182 (197)
Q Consensus 114 ~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d~d 182 (197)
.|...|||.|.+..-.|.+ ++...+++-|+.. +..+ ++.+..-.-..|++.+.|
T Consensus 3 ly~~~~~p~~~rv~~~L~~-----~gl~~e~~~v~~~-------~~~~---~~~~~np~~~vP~L~~~~ 56 (71)
T cd03060 3 LYSFRRCPYAMRARMALLL-----AGITVELREVELK-------NKPA---EMLAASPKGTVPVLVLGN 56 (71)
T ss_pred EEecCCCcHHHHHHHHHHH-----cCCCcEEEEeCCC-------CCCH---HHHHHCCCCCCCEEEECC
Confidence 4567899999865444433 2333566666542 1222 343122233689987653
No 274
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=34.50 E-value=1.4e+02 Score=22.03 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=29.3
Q ss_pred EEEEEEecC--CCC-CcH-HHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 110 VLLIVNVAS--RCG-LTP-SNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 110 ~vlv~F~a~--wC~-~C~-~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
.-||.|.-. -|. -+. .....|.++.++|+++++.++.++.+
T Consensus 22 ~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~ 66 (130)
T cd02983 22 LCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAG 66 (130)
T ss_pred eEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCc
Confidence 555555432 343 244 34689999999999988899999876
No 275
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=34.45 E-value=2.1e+02 Score=25.83 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=46.5
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHH-HHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEecC--------
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYE-KYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVS-------- 182 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~-~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d~d-------- 182 (197)
+|.+.++.--.=...+-.|...|. .++.+.|.+|...+-. -+-.|+++.|+ +..|+++-++.++.
T Consensus 205 vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYR-----IGA~EQLk~Ya-~im~vp~~vv~~~~el~~ai~~ 278 (407)
T COG1419 205 VIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYR-----IGAVEQLKTYA-DIMGVPLEVVYSPKELAEAIEA 278 (407)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccch-----hhHHHHHHHHH-HHhCCceEEecCHHHHHHHHHH
Confidence 334444433222223444444444 3334446666654432 36778899998 88899988887642
Q ss_pred CcceeEEEEcCCCC
Q 029204 183 QTYFLMLIIHVEGR 196 (197)
Q Consensus 183 ~~g~~~~ii~~~G~ 196 (197)
..-.++.+||..|+
T Consensus 279 l~~~d~ILVDTaGr 292 (407)
T COG1419 279 LRDCDVILVDTAGR 292 (407)
T ss_pred hhcCCEEEEeCCCC
Confidence 33446679998887
No 276
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=34.23 E-value=1.5e+02 Score=26.53 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=37.6
Q ss_pred CcEEEEEeCCCCC---CC--CCCCHHHHHHHHHHhcCCccceEEecCCcceeEEEEcCCCC
Q 029204 141 GFEILAFPCNQFG---GQ--EPGSNPEIKEFACTRFKAEFPIFDKVSQTYFLMLIIHVEGR 196 (197)
Q Consensus 141 gv~vv~Is~d~~~---~~--~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~~~ii~~~G~ 196 (197)
|++++.++.+.-+ .+ .+...+++.+.+ ++.+.++-+..|.| |-+..++|.+|+
T Consensus 195 G~~v~~~n~~~dg~~~~~~~~~~~l~~l~~~v-~~~~adlGia~D~D--gDRl~~vd~~G~ 252 (443)
T PRK10887 195 GAEVIAIGCEPNGLNINDECGATDPEALQAAV-LAEKADLGIAFDGD--GDRVIMVDHLGN 252 (443)
T ss_pred CCeEEEEeccCCCCCCCCCCCCCCHHHHHHHH-HhcCCCeeeEECCC--CceEEEECCCCc
Confidence 6788888654211 11 125778888888 77788988888776 667788898885
No 277
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=34.19 E-value=1.1e+02 Score=22.28 Aligned_cols=51 Identities=16% Similarity=0.262 Sum_probs=31.5
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE 174 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~ 174 (197)
|..|+.+.|.-|+.-..-|+ +.|++.-.|+.- +++-+.+++++++ +..|..
T Consensus 3 itiy~~p~C~t~rka~~~L~-------~~gi~~~~~~y~----~~~~s~~eL~~~l-~~~g~~ 53 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLE-------EHGIEYTFIDYL----KTPPSREELKKIL-SKLGDG 53 (117)
T ss_pred EEEEeCCCChHHHHHHHHHH-------HcCCCcEEEEee----cCCCCHHHHHHHH-HHcCcc
Confidence 45667889999986554443 345444444332 2357888999988 665643
No 278
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=33.61 E-value=2.7e+02 Score=22.89 Aligned_cols=62 Identities=11% Similarity=0.119 Sum_probs=36.4
Q ss_pred cCCcEEEEEEecCCCCC-cHHHHHHHHHHHHHHccC---CcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCcc
Q 029204 106 FKGKVLLIVNVASRCGL-TPSNYSELSHLYEKYKTQ---GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 175 (197)
Q Consensus 106 ~~gk~vlv~F~a~wC~~-C~~~~~~L~~l~~~~~~~---gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~f 175 (197)
+++.+.|..|+..-=+. -......+.++.++|+.. .+.+--|..+ ..++..++.+ +++|+.-
T Consensus 23 L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~-------~~~~~~~~~~-~~~Gi~~ 88 (271)
T PF09822_consen 23 LDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPD-------ENPSEAEEKA-KEYGIQP 88 (271)
T ss_pred CCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCC-------CChHHHHHHH-HhcCCCc
Confidence 34445555555443333 345566777777777533 3777777543 4566666666 7888874
No 279
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=33.57 E-value=1.3e+02 Score=21.57 Aligned_cols=26 Identities=0% Similarity=-0.018 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHc-cCCcEEEEEeCC
Q 029204 124 PSNYSELSHLYEKYK-TQGFEILAFPCN 150 (197)
Q Consensus 124 ~~~~~~L~~l~~~~~-~~gv~vv~Is~d 150 (197)
......+.++.++|+ ++ +.++.++.+
T Consensus 34 ~~~~~~~~~vAk~fk~gk-i~Fv~~D~~ 60 (111)
T cd03073 34 NYWRNRVLKVAKDFPDRK-LNFAVADKE 60 (111)
T ss_pred HHHHHHHHHHHHHCcCCe-EEEEEEcHH
Confidence 445788999999999 56 777777654
No 280
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=33.40 E-value=97 Score=26.90 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=34.5
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeC
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~ 149 (197)
.||||++.|-..-=+-++..+..+.+...+-.-.|+-+|++..
T Consensus 157 dGKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~~ 199 (345)
T PF14307_consen 157 DGKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQG 199 (345)
T ss_pred CCEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEec
Confidence 5899988887755567778888888888887777788888864
No 281
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=33.26 E-value=2.6e+02 Score=22.57 Aligned_cols=47 Identities=15% Similarity=0.056 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccc--eEE
Q 029204 124 PSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFP--IFD 179 (197)
Q Consensus 124 ~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fp--i~~ 179 (197)
....+++.++.++..++|+.++-.+- .....++++. ++++..-| ++.
T Consensus 20 ~~~~~~~~~~i~~~~~~gi~fv~aTG--------R~~~~~~~~~-~~~~~~~p~~~I~ 68 (249)
T TIGR01485 20 NQALLRLNALLEDHRGEDSLLVYSTG--------RSPHSYKELQ-KQKPLLTPDIWVT 68 (249)
T ss_pred hHHHHHHHHHHHHhhccCceEEEEcC--------CCHHHHHHHH-hcCCCCCCCEEEE
Confidence 55679999999999999997777764 5777888887 67777766 554
No 282
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=32.15 E-value=1.8e+02 Score=26.12 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=37.7
Q ss_pred CcEEEEEeCCCC---CCC--CCCCHHHHHHHHHHhcCCccceEEecCCcceeEEEEcCCCC
Q 029204 141 GFEILAFPCNQF---GGQ--EPGSNPEIKEFACTRFKAEFPIFDKVSQTYFLMLIIHVEGR 196 (197)
Q Consensus 141 gv~vv~Is~d~~---~~~--~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~~~ii~~~G~ 196 (197)
|++++.++.+.- ..+ .+...+++.+.+ ++.+.++-+..|.| +-++.++|.+|+
T Consensus 200 G~~v~~i~~~~dg~~~~~~~~~~~l~~l~~~v-~~~~adlGia~DgD--gDR~~ivd~~G~ 257 (448)
T PRK14315 200 GAEVITIGVEPNGFNINEECGSTHPEALAKKV-REVRADIGIALDGD--ADRVIIVDEKGH 257 (448)
T ss_pred CCeEEEeccCCCCCCCCCCCCCCCHHHHHHHH-HHcCCCEEEEEcCC--CceEEEEcCCCc
Confidence 678888865411 111 125678888888 77899988888776 777888998885
No 283
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=31.62 E-value=1.9e+02 Score=24.55 Aligned_cols=62 Identities=16% Similarity=0.129 Sum_probs=38.0
Q ss_pred hccccccceEEEcCCCCeEecCccCC-cEEEEEEecCCCCCcHHH--HHHHHHHHHHHc--cCCcEEEEEeCCC
Q 029204 83 ATEKSLYDFTVKDIDGKDVPLSKFKG-KVLLIVNVASRCGLTPSN--YSELSHLYEKYK--TQGFEILAFPCNQ 151 (197)
Q Consensus 83 ~~g~~apdf~l~d~~G~~v~l~~~~g-k~vlv~F~a~wC~~C~~~--~~~L~~l~~~~~--~~gv~vv~Is~d~ 151 (197)
..=+.+|-|++.|.+|+.+-...-.| +.+-+++. +.+ ...|+++.++-. +.+++|+.|+++.
T Consensus 77 ekL~~VPVFtItn~~G~pvl~s~~~~~~~~gvf~s-------~qedA~afL~~lk~~~p~l~~~~kV~pvsL~~ 143 (270)
T TIGR00995 77 KILAGTSVFTVSNAQNEFVLASDNDGEKSIGLLCF-------RQEDAEAFLAQLRKRKPEVGSQAKVVPITLDQ 143 (270)
T ss_pred HHhcCCceEEEEcCCCCeEEEECCCCCceEEEEEC-------CHHHHHHHHHHHHhhCccccCCceEEEEEHHH
Confidence 34456899999999999887665444 55554333 222 233444443333 2358999998763
No 284
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=31.37 E-value=1.2e+02 Score=27.16 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=35.6
Q ss_pred CcEEEEEeCCC---CC--CCCC---CCHHHHHHHHHHhcCCccceEEecCCcceeEEEEcCCCC
Q 029204 141 GFEILAFPCNQ---FG--GQEP---GSNPEIKEFACTRFKAEFPIFDKVSQTYFLMLIIHVEGR 196 (197)
Q Consensus 141 gv~vv~Is~d~---~~--~~~~---~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~~~ii~~~G~ 196 (197)
|++++.++.+. |. .+++ ...+++.+.+ ++.+.++-+..|.| +-++.++|.+|+
T Consensus 187 G~~v~~i~~~~d~~F~~~~p~p~~~~~l~~l~~~v-~~~~adlgia~D~D--aDR~~ivd~~G~ 247 (443)
T cd03089 187 GCEVIPLFCEPDGTFPNHHPDPTDPENLEDLIAAV-KENGADLGIAFDGD--GDRLGVVDEKGE 247 (443)
T ss_pred CCEEEEecCCCCCCCCCCCcCCCCHHHHHHHHHHH-HHcCCCEEEEecCC--cceeEEECCCCc
Confidence 67888887542 11 1222 3345666677 77788888888776 667778888885
No 285
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=30.96 E-value=1.5e+02 Score=21.23 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=30.3
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCC
Q 029204 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (197)
Q Consensus 113 v~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~ 173 (197)
..|....|.-|+.-+.-|++ .|+.+..++.- +++-+.+++.+++ +..|.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~-------~~i~~~~~di~----~~~~t~~el~~~l-~~~~~ 50 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEE-------AGIEPEIVEYL----KTPPTAAELRELL-AKLGI 50 (112)
T ss_pred EEEECCCCHHHHHHHHHHHH-------CCCCeEEEecc----cCCcCHHHHHHHH-HHcCC
Confidence 45667899999865544433 34555555432 3456888888887 55553
No 286
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=30.82 E-value=1.1e+02 Score=25.37 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=50.2
Q ss_pred cceEEEcCCCCeEecCccCCcEEEEEEe-cCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeC
Q 029204 89 YDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (197)
Q Consensus 89 pdf~l~d~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~ 149 (197)
|-+.+.-+|++.+.-+.+..+..++.|. +..=|+|+...+........|-++|-.+++|..
T Consensus 29 p~y~v~~V~~~~Li~EpW~~~T~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG~fLGiCA 90 (253)
T COG4285 29 PYYAVDRVDAQFLIKEPWEETTLLLVFPGGADLPYVQVLQGLGTARIKNYVKEGGNFLGICA 90 (253)
T ss_pred chheEEEeeeheeecCcchhceEEEEecCCCCchHHHHhcchhhhhHHHHHhcCCeEEEEec
Confidence 4467778888877766688888888887 556788998889999999999999999999975
No 287
>PF15092 UPF0728: Uncharacterised protein family UPF0728
Probab=30.70 E-value=1.6e+02 Score=20.56 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=32.9
Q ss_pred EEEEEEe--cCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCC
Q 029204 110 VLLIVNV--ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQF 152 (197)
Q Consensus 110 ~vlv~F~--a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~ 152 (197)
.+|...| ..-|+.-..-..+|+-|+..+.+.|-+|+-..++++
T Consensus 5 a~V~iryGPY~a~glv~hrt~RL~GLqa~L~~dGh~v~L~~~~d~ 49 (88)
T PF15092_consen 5 AYVTIRYGPYSACGLVEHRTFRLEGLQAVLAKDGHEVILEKIEDW 49 (88)
T ss_pred cEEEEEecCchhhCeeeehHHHHHHHHHHHHhCCcEEEEEEeccc
Confidence 4444455 447887666788999999999999999988887754
No 288
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=30.56 E-value=2.3e+02 Score=21.92 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=42.8
Q ss_pred cchhccccccceEEE-cCCCCeEecCc---cCCcEEEEEEecCCC-CCcHHHHHHHHHHH-------HHHccCC------
Q 029204 80 ATAATEKSLYDFTVK-DIDGKDVPLSK---FKGKVLLIVNVASRC-GLTPSNYSELSHLY-------EKYKTQG------ 141 (197)
Q Consensus 80 ~~~~~g~~apdf~l~-d~~G~~v~l~~---~~gk~vlv~F~a~wC-~~C~~~~~~L~~l~-------~~~~~~g------ 141 (197)
....+|..+|+..+. -.||+.+.|.+ ..|+.-|+.|-++.- +.+..-+..|.+.. ..|..++
T Consensus 28 ~~l~~G~Rlp~~~v~r~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s~ 107 (169)
T PF07976_consen 28 GGLRPGRRLPSAKVVRHADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDSV 107 (169)
T ss_dssp TTS-TTCB----EEEETTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTSS
T ss_pred cCcCCccccCCceEEEEcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCCe
Confidence 445799999999875 56999999987 378888888876644 34433444444433 3554432
Q ss_pred cEEEEEeCC
Q 029204 142 FEILAFPCN 150 (197)
Q Consensus 142 v~vv~Is~d 150 (197)
++++.|...
T Consensus 108 ~~~~~I~~~ 116 (169)
T PF07976_consen 108 FDVLLIHSS 116 (169)
T ss_dssp EEEEEEESS
T ss_pred eEEEEEecC
Confidence 889999764
No 289
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=30.30 E-value=90 Score=21.89 Aligned_cols=43 Identities=9% Similarity=0.119 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCcc
Q 029204 127 YSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 175 (197)
Q Consensus 127 ~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~f 175 (197)
+|.-.+..+..+++|..++.++-+. ..+.++..+.+ ++.|++.
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns-----~~s~~~~~~~L-~~~Gi~~ 58 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNS-----SRSREEYAKKL-KKLGIPV 58 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-S-----SS-HHHHHHHH-HHTTTT-
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCC-----CCCHHHHHHHH-HhcCcCC
Confidence 5556667777777788999998663 35667777777 6677663
No 290
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=30.26 E-value=1.4e+02 Score=26.81 Aligned_cols=54 Identities=11% Similarity=0.172 Sum_probs=35.8
Q ss_pred CCcEEEEEeCCC---CCC--CC---CCCHHHHHHHHHHhcCCccceEEecCCcceeEEEEcCCCC
Q 029204 140 QGFEILAFPCNQ---FGG--QE---PGSNPEIKEFACTRFKAEFPIFDKVSQTYFLMLIIHVEGR 196 (197)
Q Consensus 140 ~gv~vv~Is~d~---~~~--~~---~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~~~ii~~~G~ 196 (197)
.|++++.++.+. |.+ ++ +...+++.+.+ ++.+.++-+..|.| +-++.++|.+|+
T Consensus 187 lg~~vv~~~~~~d~~Fp~~~p~P~~~~~l~~l~~~v-~~~~adlGia~DgD--~DR~~ivd~~G~ 248 (445)
T PRK09542 187 LPITLLPLYFELDGTFPNHEANPLDPANLVDLQAFV-RETGADIGLAFDGD--ADRCFVVDERGQ 248 (445)
T ss_pred CCCEEEEEecCcCCCCCCCCcCCCCHHHHHHHHHHH-HHcCCCEEEEECCC--CceEEEECCCCC
Confidence 368898887531 111 11 23344566666 77788888888776 667788999986
No 291
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=30.10 E-value=2e+02 Score=25.80 Aligned_cols=61 Identities=11% Similarity=0.179 Sum_probs=39.7
Q ss_pred HHHHHHHHccCCcEEEEEeCCCCC-----CCCCCCHHHHHHHHHHhcCCccceEEecCCcceeEEEEcCCCC
Q 029204 130 LSHLYEKYKTQGFEILAFPCNQFG-----GQEPGSNPEIKEFACTRFKAEFPIFDKVSQTYFLMLIIHVEGR 196 (197)
Q Consensus 130 L~~l~~~~~~~gv~vv~Is~d~~~-----~~~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~~~ii~~~G~ 196 (197)
+.++.+++ |++++.|+.+.-+ ...+...+++++.+ ++.+.++-+..|.| +-+..++|.+|+
T Consensus 189 ~~~ll~~l---g~~v~~in~~~dg~~~~~~~~~~~~~~l~~~v-~~~~adlGia~DgD--aDR~~~vd~~G~ 254 (448)
T PRK14316 189 APRLFADL---GADVTVIGTSPDGLNINDGVGSTHPEALQELV-VEKGADLGLAFDGD--ADRLIAVDENGN 254 (448)
T ss_pred HHHHHHHc---CCeEEEEccCCCCCCCCCCCCCCCHHHHHHHH-hhcCCCEEEEEcCC--CceEEEECCCCC
Confidence 33444443 5788888654111 11235678888888 77788888888776 556677888875
No 292
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=29.96 E-value=1.5e+02 Score=18.68 Aligned_cols=31 Identities=3% Similarity=-0.116 Sum_probs=17.7
Q ss_pred EEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeC
Q 029204 114 VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (197)
Q Consensus 114 ~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~ 149 (197)
-|+..+|+.|++..-.|.+. +..++++-|..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~-----gi~~e~~~i~~ 33 (74)
T cd03045 3 LYYLPGSPPCRAVLLTAKAL-----GLELNLKEVNL 33 (74)
T ss_pred EEeCCCCCcHHHHHHHHHHc-----CCCCEEEEecC
Confidence 46678999998544444332 22355665543
No 293
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=29.90 E-value=2.3e+02 Score=21.63 Aligned_cols=7 Identities=43% Similarity=0.833 Sum_probs=3.2
Q ss_pred cCCcEEE
Q 029204 106 FKGKVLL 112 (197)
Q Consensus 106 ~~gk~vl 112 (197)
++||.+.
T Consensus 76 l~gk~v~ 82 (167)
T TIGR01752 76 FTGKTVA 82 (167)
T ss_pred CCCCEEE
Confidence 3455443
No 294
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=29.78 E-value=1.6e+02 Score=19.05 Aligned_cols=54 Identities=17% Similarity=0.023 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEecCCcceeEE
Q 029204 127 YSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVSQTYFLML 189 (197)
Q Consensus 127 ~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~~~ 189 (197)
+-..++..++.+. -+++.|-.|+ +.+.+++.+|+ ++.|..+-...+.+ +.+..+
T Consensus 13 vi~~kkal~~l~~--G~~l~V~~d~-----~~s~~ni~~~~-~~~g~~v~~~~~~~-~~~~~~ 66 (69)
T cd03422 13 AIATLEALPSLKP--GEILEVISDC-----PQSINNIPIDA-RNHGYKVLAIEQSG-PTIRYL 66 (69)
T ss_pred HHHHHHHHHcCCC--CCEEEEEecC-----chHHHHHHHHH-HHcCCEEEEEEecC-CEEEEE
Confidence 3344444444432 2344444443 57899999999 77787775544432 344443
No 295
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=29.71 E-value=1.1e+02 Score=25.83 Aligned_cols=62 Identities=16% Similarity=0.202 Sum_probs=31.3
Q ss_pred hccccccceEEEcCCCCeEecCccC--CcEEEEEEecCCCCCcHHHHH-HHHHHHHHHc--cCCcEEEEEeCC
Q 029204 83 ATEKSLYDFTVKDIDGKDVPLSKFK--GKVLLIVNVASRCGLTPSNYS-ELSHLYEKYK--TQGFEILAFPCN 150 (197)
Q Consensus 83 ~~g~~apdf~l~d~~G~~v~l~~~~--gk~vlv~F~a~wC~~C~~~~~-~L~~l~~~~~--~~gv~vv~Is~d 150 (197)
+.=..+|-|.+.|.+|+.+-...-. ++.+..+|+ ++.+.. .|+++..+.. ..+++|+.|+++
T Consensus 70 ~kL~~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~------s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~ 136 (274)
T PF04278_consen 70 EKLAGVPVFTITNSQGEPVLVSGPDQGGKSVGLFFF------SQQDAEAFLAQLKKSNPELASGAKVVPVSLG 136 (274)
T ss_dssp HHHTTSEEEEEE-TT--B-----TTS--SEEEEEES-------HHHHHHHHHHHHH-SSHHHTT-EEEEEEHH
T ss_pred HHhcCceEEEEECCCCCEEEeccCCCCCceEEEEEe------cHHHHHHHHHHHhhhCccccCceEEEEecHH
Confidence 3445689999999999987665544 566665555 444443 3444444332 345889888765
No 296
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=29.60 E-value=56 Score=18.73 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHhcCCccc
Q 029204 159 SNPEIKEFACTRFKAEFP 176 (197)
Q Consensus 159 ~~~~~~~~~~~~~~~~fp 176 (197)
+.+++++|+ +.+|+.+|
T Consensus 5 s~~~L~~wL-~~~gi~~~ 21 (38)
T PF10281_consen 5 SDSDLKSWL-KSHGIPVP 21 (38)
T ss_pred CHHHHHHHH-HHcCCCCC
Confidence 568899999 88898876
No 297
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=29.47 E-value=1.7e+02 Score=24.29 Aligned_cols=70 Identities=11% Similarity=0.104 Sum_probs=44.5
Q ss_pred EEEEEEecC-CCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEecCCcce
Q 029204 110 VLLIVNVAS-RCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVSQTYF 186 (197)
Q Consensus 110 ~vlv~F~a~-wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~ 186 (197)
|++|.|-++ .|+-......--.++.++|.+. -.+..+++|+|.- +.++..+.. ++ ..+-+++.-....|.
T Consensus 31 Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E-~s~~~~SvDDFYL----The~Q~eL~-k~-npnN~Llq~RGlaGt 101 (282)
T KOG2878|consen 31 PLVIGFSGPQGSGKSTLVFALDYKLTKKYIQE-YSSATISVDDFYL----THEGQAELR-KK-NPNNALLQYRGLAGT 101 (282)
T ss_pred cEEEEecCCCCCCceeehhhhHHHHHHHhccc-cceEEEEecceee----echhHHHHH-hh-CCCChhhccCCCCCc
Confidence 888888877 6776655555556888888765 5888999998854 333333332 22 444555555544444
No 298
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=29.47 E-value=1.6e+02 Score=18.82 Aligned_cols=57 Identities=12% Similarity=0.222 Sum_probs=32.5
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEe
Q 029204 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDK 180 (197)
Q Consensus 113 v~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d 180 (197)
|+..+--||.. +-.+.+..++... | +.+-|-+|+ +...+++.+|+ ++.|..+--+.+
T Consensus 3 lD~rg~~CP~P---ll~~~~~l~~l~~-G-~~l~v~~d~-----~~~~~di~~~~-~~~g~~~~~~~~ 59 (70)
T PF01206_consen 3 LDLRGLSCPMP---LLKAKKALKELPP-G-EVLEVLVDD-----PAAVEDIPRWC-EENGYEVVEVEE 59 (70)
T ss_dssp EECSS-STTHH---HHHHHHHHHTSGT-T--EEEEEESS-----TTHHHHHHHHH-HHHTEEEEEEEE
T ss_pred EeCCCCCCCHH---HHHHHHHHHhcCC-C-CEEEEEECC-----ccHHHHHHHHH-HHCCCEEEEEEE
Confidence 34445556644 3444455555433 3 344444443 57889999999 777887666655
No 299
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=29.39 E-value=1.1e+02 Score=27.55 Aligned_cols=53 Identities=11% Similarity=0.081 Sum_probs=33.6
Q ss_pred CcEEEEEeCCC---C----CCCCCCCHHHHHHHHHHhcCCccceEEecCCcceeEEEEcCCCC
Q 029204 141 GFEILAFPCNQ---F----GGQEPGSNPEIKEFACTRFKAEFPIFDKVSQTYFLMLIIHVEGR 196 (197)
Q Consensus 141 gv~vv~Is~d~---~----~~~~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~~~ii~~~G~ 196 (197)
|++++.++.+. | ..+++...+++++.+ ++.+.++-+..|.| |-++.++|.+|+
T Consensus 197 g~~v~~~~~~~dg~F~~~~p~p~~~~l~~l~~~v-~~~~ad~Gia~D~D--gDR~~vvd~~G~ 256 (461)
T cd05800 197 GVDVEEIRAERDPLFGGIPPEPIEKNLGELAEAV-KEGGADLGLATDGD--ADRIGAVDEKGN 256 (461)
T ss_pred CCCEEEeeCCcCCCCCCCCCCCCHHHHHHHHHHH-HhcCCCEEEEECCC--CCeEEEEeCCCc
Confidence 56777776431 1 112223445566666 66688888888766 777788888875
No 300
>PRK10026 arsenate reductase; Provisional
Probab=29.30 E-value=1.8e+02 Score=22.11 Aligned_cols=50 Identities=12% Similarity=0.239 Sum_probs=32.8
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCC
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~ 173 (197)
+..|+.+.|.-|+.-+.-|++- |+++-.+..- +++-+.+++++++ ++.|.
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~-------gi~~~~~d~~----~~ppt~~eL~~~l-~~~g~ 53 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS-------GTEPTIIHYL----ETPPTRDELVKLI-ADMGI 53 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------CCCcEEEeee----CCCcCHHHHHHHH-HhCCC
Confidence 4567788999999766555443 4444444432 2356889999998 56564
No 301
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=29.30 E-value=1.2e+02 Score=24.54 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEe
Q 029204 124 PSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDK 180 (197)
Q Consensus 124 ~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d 180 (197)
....|...++.+..++.|.+++-|| ++...+.+.+++++|+++-+-..
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiS---------gg~~~lv~~ia~~lg~d~~~an~ 123 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIIS---------GGFTFLVEPIAERLGIDYVVANE 123 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEc---------CChHHHHHHHHHHhCCchheeeE
Confidence 4557778888889999999999998 56777777777899998765544
No 302
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=29.27 E-value=1.3e+02 Score=25.52 Aligned_cols=24 Identities=13% Similarity=0.382 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHccC-C--cEEEEEeC
Q 029204 126 NYSELSHLYEKYKTQ-G--FEILAFPC 149 (197)
Q Consensus 126 ~~~~L~~l~~~~~~~-g--v~vv~Is~ 149 (197)
+-..|.+-.+++.++ + +.||.|..
T Consensus 47 e~~~Leq~l~~L~~kt~~QiaVv~vpS 73 (271)
T COG1512 47 ERGALEQQLADLEQKTGAQIAVVTVPS 73 (271)
T ss_pred hHHHHHHHHHHHHhccCCeEEEEEecC
Confidence 444555555555443 2 55555544
No 303
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=29.14 E-value=1.8e+02 Score=26.72 Aligned_cols=60 Identities=25% Similarity=0.343 Sum_probs=37.0
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceE
Q 029204 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (197)
Q Consensus 108 gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~ 178 (197)
|||.||..= +.-|.......--.+|.++| ++.|+.++|++ -..+++.+.+ ++-=+.||+-
T Consensus 180 gKPFvillN-s~~P~s~et~~L~~eL~ekY---~vpVlpvnc~~------l~~~DI~~Il-~~vLyEFPV~ 239 (492)
T PF09547_consen 180 GKPFVILLN-STKPYSEETQELAEELEEKY---DVPVLPVNCEQ------LREEDITRIL-EEVLYEFPVS 239 (492)
T ss_pred CCCEEEEEe-CCCCCCHHHHHHHHHHHHHh---CCcEEEeehHH------cCHHHHHHHH-HHHHhcCCce
Confidence 776433321 22333333333334455666 58999999985 5778888887 6667788874
No 304
>PRK04011 peptide chain release factor 1; Provisional
Probab=29.00 E-value=1e+02 Score=27.65 Aligned_cols=24 Identities=13% Similarity=0.147 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHccCCcEEEEEeCC
Q 029204 127 YSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 127 ~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
-+.+..+.+.+++.|.+|..|+.+
T Consensus 366 ~~~v~~l~e~a~~~g~~v~iis~~ 389 (411)
T PRK04011 366 EDIIEELSELAEQSGTKVEVISTD 389 (411)
T ss_pred hhHHHHHHHHHHHcCCEEEEECCC
Confidence 356778888888889999999854
No 305
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=28.91 E-value=2.1e+02 Score=25.67 Aligned_cols=53 Identities=13% Similarity=0.095 Sum_probs=37.4
Q ss_pred CcEEEEEeCCCCCC-----CCCCCHHHHHHHHHHhcCCccceEEecCCcceeEEEEcCCCC
Q 029204 141 GFEILAFPCNQFGG-----QEPGSNPEIKEFACTRFKAEFPIFDKVSQTYFLMLIIHVEGR 196 (197)
Q Consensus 141 gv~vv~Is~d~~~~-----~~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~~~ii~~~G~ 196 (197)
|++++.++.+.-+. ..+...+++.+.+ ++.+.++-+..|.| +-+..++|.+|+
T Consensus 201 g~~v~~~~~~~dg~~~~~~~~~~~~~~l~~~v-~~~~adlGia~DgD--gDR~~~vd~~G~ 258 (450)
T PRK14314 201 GAEVICIGVEPNGLNINAGCGSLHPEVIAKAV-IEHGADLGIALDGD--ADRLIVVDEKGH 258 (450)
T ss_pred CCeEEEeccCCCCCCCCCCCCCCCHHHHHHHH-HhcCCCeEEEEcCC--CceEEEECCCCc
Confidence 68888886542111 1236777888888 77788888888776 667778898885
No 306
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=28.86 E-value=1.6e+02 Score=25.46 Aligned_cols=61 Identities=18% Similarity=0.292 Sum_probs=38.2
Q ss_pred HHHHHHHHccCCcEEEEEeCCCCC-----CCC---CCCHHHHHHHHHHhcCCccceEEecCCcceeEEEEcCCCC
Q 029204 130 LSHLYEKYKTQGFEILAFPCNQFG-----GQE---PGSNPEIKEFACTRFKAEFPIFDKVSQTYFLMLIIHVEGR 196 (197)
Q Consensus 130 L~~l~~~~~~~gv~vv~Is~d~~~-----~~~---~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~~~ii~~~G~ 196 (197)
+.++.+++ |++++.++.+.-+ .++ +...+++.+.+ ++.+.++-+..|.| |-++.++|.+|+
T Consensus 128 ~~~ll~~l---g~~v~~~n~~~d~~F~~~~p~p~~~~~l~~l~~~v-~~~~adlG~a~DgD--gDRl~~vd~~G~ 196 (355)
T cd03084 128 APQLLEKL---GAEVIPLNCEPDGNFGNINPDPGSETNLKQLLAVV-KAEKADFGVAFDGD--ADRLIVVDENGG 196 (355)
T ss_pred HHHHHHHc---CCcEEEEcCcCCCCCCCCCCCCCchhhHHHHHHHH-HhcCCCEEEEEcCC--CceeEEECCCCc
Confidence 34444443 5778888754111 111 24555666677 66788888877665 778888998886
No 307
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=28.67 E-value=48 Score=21.95 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=21.0
Q ss_pred chhccccccceEEEcCCCCeEecCc
Q 029204 81 TAATEKSLYDFTVKDIDGKDVPLSK 105 (197)
Q Consensus 81 ~~~~g~~apdf~l~d~~G~~v~l~~ 105 (197)
...+|+.+.+++++|..|+.++++.
T Consensus 29 sgNvgQP~ENWElkDe~G~vlD~~k 53 (76)
T PF10790_consen 29 SGNVGQPPENWELKDESGQVLDVNK 53 (76)
T ss_pred ccccCCCcccceeeccCCcEeeccc
Confidence 3457888999999999999988765
No 308
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=28.64 E-value=1.8e+02 Score=26.18 Aligned_cols=53 Identities=11% Similarity=0.085 Sum_probs=35.9
Q ss_pred CcEEEEEeCCCC------CCCCCCCHHHHHHHHHHhcCCccceEEecCCcceeEEEEcCCCC
Q 029204 141 GFEILAFPCNQF------GGQEPGSNPEIKEFACTRFKAEFPIFDKVSQTYFLMLIIHVEGR 196 (197)
Q Consensus 141 gv~vv~Is~d~~------~~~~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~~~ii~~~G~ 196 (197)
|++++.++.+.- ..+.++..+++.+.+ ++.+.++-+..|.| +-+..++|.+|+
T Consensus 189 g~~v~~i~~~~d~~f~~~p~p~~~~l~~l~~~v-~~~~adlGia~DgD--~DR~~vvd~~G~ 247 (449)
T PRK14321 189 GNKVISLNSHPSGFFVRELEPNAKSLSMLAKTV-KVLKADVGIAHDGD--ADRIGVVDDQGN 247 (449)
T ss_pred CCEEEEeCccCCCCCCCCCCCchhhHHHHHHHH-HHCCCCEEEEecCC--CceEEEECCCCC
Confidence 678888765411 112235666777777 67788888888776 677778888885
No 309
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=28.48 E-value=2.2e+02 Score=25.51 Aligned_cols=53 Identities=11% Similarity=0.172 Sum_probs=36.3
Q ss_pred CcEEEEEeCCCCC---CC--CCCCHHHHHHHHHHhcCCccceEEecCCcceeEEEEcCCCC
Q 029204 141 GFEILAFPCNQFG---GQ--EPGSNPEIKEFACTRFKAEFPIFDKVSQTYFLMLIIHVEGR 196 (197)
Q Consensus 141 gv~vv~Is~d~~~---~~--~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~~~ii~~~G~ 196 (197)
|++++.++.+.-+ .+ .+...+++.+.+ ++.+.++-+..|.| +-++.++|.+|+
T Consensus 199 G~~v~~in~~~dg~~~~~~~~~~~l~~l~~~v-~~~~adlGia~DgD--~DR~~~vd~~G~ 256 (448)
T PRK14318 199 GADVIAINADPDGLNINDGCGSTHLEQLQAAV-VAHGADLGLAHDGD--ADRCLAVDANGN 256 (448)
T ss_pred CCEEEEeccCCCCCCCCCCCCCCCHHHHHHHH-HhcCCCEEEEecCC--CceEEEECCCCc
Confidence 6788877654111 11 125677888888 77788888888776 566678898885
No 310
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=28.09 E-value=1.6e+02 Score=21.88 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=28.4
Q ss_pred HHHHHHHHHHccCCcEEEEEeCCCCCCCC-------CCCHHHHHHHHHHhcCCccc
Q 029204 128 SELSHLYEKYKTQGFEILAFPCNQFGGQE-------PGSNPEIKEFACTRFKAEFP 176 (197)
Q Consensus 128 ~~L~~l~~~~~~~gv~vv~Is~d~~~~~~-------~~~~~~~~~~~~~~~~~~fp 176 (197)
+...+..+++.++|..|+-++.-.....+ ....+...+|+ ++++++|-
T Consensus 27 ~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL-~k~~ipYd 81 (126)
T TIGR01689 27 LAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWL-NQHNVPYD 81 (126)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHH-HHcCCCCc
Confidence 34444455555578999998854211000 01224778899 88899984
No 311
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=27.93 E-value=1.6e+02 Score=26.39 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=33.8
Q ss_pred CcEEEEEeCCCC------CCCCCCCHHHHHHHHHHhcCCccceEEecCCcceeEEEEcCCCC
Q 029204 141 GFEILAFPCNQF------GGQEPGSNPEIKEFACTRFKAEFPIFDKVSQTYFLMLIIHVEGR 196 (197)
Q Consensus 141 gv~vv~Is~d~~------~~~~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~~~ii~~~G~ 196 (197)
|++++.++.+.- ..+.+++.+++.+.+ +..+.++-+..|.| |-++.++|.+|+
T Consensus 197 g~~v~~~~~~~d~~F~~~p~p~~~~l~~l~~~v-~~~~adlgi~~D~D--gDR~~ivd~~G~ 255 (445)
T cd05803 197 GCEVIVLNCEPTGLFPHTPEPLPENLTQLCAAV-KESGADVGFAVDPD--ADRLALVDEDGR 255 (445)
T ss_pred CCEEEEeCCcCCCCCCCCCCCChHHHHHHHHHH-HhcCCCEEEeeCCC--CceEEEECCCCC
Confidence 677777764311 111223455666666 66688888887766 667778998886
No 312
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=27.61 E-value=1.3e+02 Score=27.55 Aligned_cols=71 Identities=7% Similarity=0.114 Sum_probs=52.4
Q ss_pred ccchhccccccceEEEcCCCCeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 79 HATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 79 ~~~~~~g~~apdf~l~d~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
.++..-+..+-.+.+.-.+|+.|++.+++|..-+|..-++- ..+..-+...+...+++.++||-||-|..+
T Consensus 267 ~~ri~Ree~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~-e~v~~al~~ae~~r~~L~~r~VlvVPv~~~ 337 (453)
T PLN03098 267 MSQITRDETLSRLPVRLSTNRIVELVQLRDITRPVILAGTK-ESVTLAMQKAERYRTELLKRGVLLIPVVWG 337 (453)
T ss_pred HHHHHhhhhhccceEeccCCCEEeHHHhcCcceEEEEECCH-HHHHHHHHHhHHHHHHHHHcCcEEEEEecC
Confidence 34455666666777766678899999999964333333333 566778888889999999999999999875
No 313
>KOG2990 consensus C2C2-type Zn-finger protein [Function unknown]
Probab=27.56 E-value=41 Score=28.75 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=15.2
Q ss_pred EEEEEE---ecCCCCCcHHHHH
Q 029204 110 VLLIVN---VASRCGLTPSNYS 128 (197)
Q Consensus 110 ~vlv~F---~a~wC~~C~~~~~ 128 (197)
.+||-| |..||..|..++.
T Consensus 42 ilvIRFEMPynIWC~gC~nhIg 63 (317)
T KOG2990|consen 42 ILVIRFEMPYNIWCDGCKNHIG 63 (317)
T ss_pred eEEEEEecccchhhccHHHhhh
Confidence 678888 5779999997764
No 314
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=27.45 E-value=1.4e+02 Score=26.18 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=55.9
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceE---Eec--
Q 029204 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF---DKV-- 181 (197)
Q Consensus 107 ~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~---~d~-- 181 (197)
.+||.++-|.+-.-- -+ ...|.+|...|+++|..|+-...|.|.. .-.++++.|. ++.|+++--- .|+
T Consensus 136 ~~~p~Vil~vGVNG~-GK--TTTIaKLA~~l~~~g~~VllaA~DTFRA---aAiEQL~~w~-er~gv~vI~~~~G~DpAa 208 (340)
T COG0552 136 EKKPFVILFVGVNGV-GK--TTTIAKLAKYLKQQGKSVLLAAGDTFRA---AAIEQLEVWG-ERLGVPVISGKEGADPAA 208 (340)
T ss_pred CCCcEEEEEEecCCC-ch--HhHHHHHHHHHHHCCCeEEEEecchHHH---HHHHHHHHHH-HHhCCeEEccCCCCCcHH
Confidence 467888888766432 22 4567888888888999999999997743 5677788888 7766653221 111
Q ss_pred ---------CCcceeEEEEcCCCCC
Q 029204 182 ---------SQTYFLMLIIHVEGRK 197 (197)
Q Consensus 182 ---------d~~g~~~~ii~~~G~~ 197 (197)
..++....|||..||.
T Consensus 209 VafDAi~~Akar~~DvvliDTAGRL 233 (340)
T COG0552 209 VAFDAIQAAKARGIDVVLIDTAGRL 233 (340)
T ss_pred HHHHHHHHHHHcCCCEEEEeCcccc
Confidence 1223355699998873
No 315
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=27.32 E-value=2.8e+02 Score=21.75 Aligned_cols=44 Identities=9% Similarity=0.014 Sum_probs=26.6
Q ss_pred HHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEe
Q 029204 128 SELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDK 180 (197)
Q Consensus 128 ~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d 180 (197)
+...+...+.+++|+.|+-.+- .....+.+++ ++.+++-|++..
T Consensus 23 ~~~~~al~~l~~~G~~~~iaTG--------R~~~~~~~~~-~~l~~~~~~i~~ 66 (230)
T PRK01158 23 LKAVEAIRKAEKLGIPVILATG--------NVLCFARAAA-KLIGTSGPVIAE 66 (230)
T ss_pred HHHHHHHHHHHHCCCEEEEEcC--------CchHHHHHHH-HHhCCCCcEEEe
Confidence 3444445556667888777763 3555666666 666776666553
No 316
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=27.30 E-value=2.1e+02 Score=25.89 Aligned_cols=53 Identities=11% Similarity=0.017 Sum_probs=34.9
Q ss_pred CcEEEEEeCCC---CCCCCC--CCHHHHHHHHHHhcCCccceEEecCCcceeEEEEcCCCC
Q 029204 141 GFEILAFPCNQ---FGGQEP--GSNPEIKEFACTRFKAEFPIFDKVSQTYFLMLIIHVEGR 196 (197)
Q Consensus 141 gv~vv~Is~d~---~~~~~~--~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~~~ii~~~G~ 196 (197)
|++++.++.+. +..+++ ...+++++.+ ++.+.++-+..|.| +-++.++|.+|+
T Consensus 212 G~~v~~l~~~~dg~~~~~~~~~~~l~~l~~~v-~~~~adlGia~DgD--gDR~~~vd~~G~ 269 (465)
T PRK14317 212 GAEVICLHDQPDGDRINVNCGSTHLEPLQAAV-LEHGADMGFAFDGD--ADRVLAVDGQGR 269 (465)
T ss_pred CCeEEEEecccCCCCCCCCCchHhHHHHHHHH-HhcCCCEEEEECCC--CcEEEEECCCCC
Confidence 67888876541 111111 3456667777 67788888888776 666777898885
No 317
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=27.24 E-value=2.4e+02 Score=25.29 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=36.9
Q ss_pred CcEEEEEeCCCCCC---C--CCCCHHHHHHHHHHhcCCccceEEecCCcceeEEEEcCCCC
Q 029204 141 GFEILAFPCNQFGG---Q--EPGSNPEIKEFACTRFKAEFPIFDKVSQTYFLMLIIHVEGR 196 (197)
Q Consensus 141 gv~vv~Is~d~~~~---~--~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~~~ii~~~G~ 196 (197)
|++++.++.+.-+. + .+...+++.+.+ ++.+.++-+..|.| +-+..++|.+|+
T Consensus 196 g~~v~~in~~~d~~~~~~~~~~~~l~~l~~~v-~~~~adlGia~DgD--~DR~~~vd~~G~ 253 (443)
T TIGR01455 196 GAEVIAIGVEPDGLNINDGCGSTHLDALQKAV-REHGADLGIAFDGD--ADRVLAVDANGR 253 (443)
T ss_pred CCEEEEEccCCCCCCCCCCCCCCCHHHHHHHH-hhcCCCEEEEEcCC--CceEEEECCCCc
Confidence 67888887642111 1 135677888888 77788888888776 556677888885
No 318
>PRK10200 putative racemase; Provisional
Probab=27.17 E-value=1.2e+02 Score=24.69 Aligned_cols=44 Identities=14% Similarity=0.159 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEE
Q 029204 126 NYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFD 179 (197)
Q Consensus 126 ~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~ 179 (197)
..+.|.+..+.+.+.|++++.|.|| +.-...+.++++ .+.|++.
T Consensus 60 ~~~~l~~~~~~L~~~g~~~iviaCN--------Tah~~~~~l~~~--~~iPii~ 103 (230)
T PRK10200 60 TGDILAEAALGLQRAGAEGIVLCTN--------TMHKVADAIESR--CSLPFLH 103 (230)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCc--------hHHHHHHHHHHh--CCCCEee
Confidence 5678888888999999999999998 444445556344 4567775
No 319
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=27.14 E-value=2.1e+02 Score=25.58 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=37.1
Q ss_pred CcEEEEEeCCCCC---CC--CCCCHHHHHHHHHHhcCCccceEEecCCcceeEEEEcCCCC
Q 029204 141 GFEILAFPCNQFG---GQ--EPGSNPEIKEFACTRFKAEFPIFDKVSQTYFLMLIIHVEGR 196 (197)
Q Consensus 141 gv~vv~Is~d~~~---~~--~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~~~ii~~~G~ 196 (197)
|++++.+..+.-+ .+ .+...+++++.+ ++.+.++-+..|.| +-+..++|.+|+
T Consensus 197 G~~v~~l~~~~dg~~~~~~~~~~~l~~l~~~v-~~~~adlGia~DgD--~DR~~~vD~~G~ 254 (440)
T PRK14323 197 GADVFALFNTPDGRNINRGCGSTHPEALQRFV-VEGGLDLGVAFDGD--ADRALFVDRRGR 254 (440)
T ss_pred CCcEEEEeccCCCCcCCCCCCCCCHHHHHHHH-hccCCCEEEEeCCC--cceeEEECCCCc
Confidence 6778887654211 11 135778888888 77788888888776 667778888885
No 320
>PF11303 DUF3105: Protein of unknown function (DUF3105); InterPro: IPR021454 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=26.81 E-value=2.7e+02 Score=20.80 Aligned_cols=52 Identities=19% Similarity=0.333 Sum_probs=29.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHccC---------CcEEEEEeCCCCCCCCCCCHHHHHHHHHHhc
Q 029204 118 SRCGLTPSNYSELSHLYEKYKTQ---------GFEILAFPCNQFGGQEPGSNPEIKEFACTRF 171 (197)
Q Consensus 118 ~wC~~C~~~~~~L~~l~~~~~~~---------gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~ 171 (197)
.-| .|..++..|+++.+.+..+ +-.|+...=..-..-+.-+.+.+++|+ ++|
T Consensus 57 ~p~-~~~~~v~~L~~l~~~~~~~~visP~~~~~~pialtaWg~~l~~~~~d~~~i~~Fi-~~~ 117 (130)
T PF11303_consen 57 DPC-LPPDQVAKLKALAKSCLPYVVISPYPGLDRPIALTAWGRQLKLDSADDPRIKQFI-RKY 117 (130)
T ss_pred CCC-CCHHHHHHHHHHHhccCCcEEEecCCCCCCCEEEeecCCEeecCcCCHHHHHHHH-HHH
Confidence 344 8899999999999884332 222222210000011235778899999 554
No 321
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.80 E-value=1e+02 Score=24.80 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=30.3
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEe
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is 148 (197)
.|.||...|+.-...+..|.+|-...++.|+.|+.-.
T Consensus 42 Fv~~~~~~~~~~~~li~Ni~~Lr~~~~~~giPVvyTa 78 (218)
T COG1535 42 FVSPWGENCPLMEQLIANIAKLRIWCKQAGIPVVYTA 78 (218)
T ss_pred hcCCCCCCCccHHHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3457788888877888899999999999999888764
No 322
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=26.74 E-value=11 Score=22.94 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=16.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHcc
Q 029204 118 SRCGLTPSNYSELSHLYEKYKT 139 (197)
Q Consensus 118 ~wC~~C~~~~~~L~~l~~~~~~ 139 (197)
-+|.||+.-.+.|.++.++..+
T Consensus 17 GkC~PCR~Gt~~l~~~l~~i~~ 38 (46)
T PF10589_consen 17 GKCTPCREGTRQLAEILEKIVR 38 (46)
T ss_dssp S--HHHHCCCCHHHHHHHHHTB
T ss_pred CCCCCcHhHHHHHHHHHHHHHc
Confidence 3788999999999999988754
No 323
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=25.78 E-value=2.2e+02 Score=22.45 Aligned_cols=37 Identities=3% Similarity=-0.010 Sum_probs=24.9
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeC
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~ 149 (197)
|-+|+-.-||+|..-...|.++.+++.- .++..-+.+
T Consensus 3 Id~~~D~vcPwcylg~~~l~~~~~~~~v-~i~~~P~~L 39 (209)
T cd03021 3 IELYYDVVSPYSYLAFEVLCRYQTAWNV-DITYVPVFL 39 (209)
T ss_pred eEEEEeCCChHHHHHHHHHHHHHHHhCC-eEEEEeeeh
Confidence 3345566899999999999998876532 244445444
No 324
>PRK14974 cell division protein FtsY; Provisional
Probab=25.31 E-value=2e+02 Score=25.07 Aligned_cols=81 Identities=23% Similarity=0.367 Sum_probs=43.7
Q ss_pred CcEEEEEEecC-CCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEE-------
Q 029204 108 GKVLLIVNVAS-RCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFD------- 179 (197)
Q Consensus 108 gk~vlv~F~a~-wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~------- 179 (197)
+++.+|.|.+. .+|-. ..+.++...+.++|..|+-+..|.+ .....++++.+. ++.++++--..
T Consensus 138 ~~~~vi~~~G~~GvGKT----TtiakLA~~l~~~g~~V~li~~Dt~---R~~a~eqL~~~a-~~lgv~v~~~~~g~dp~~ 209 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKT----TTIAKLAYYLKKNGFSVVIAAGDTF---RAGAIEQLEEHA-ERLGVKVIKHKYGADPAA 209 (336)
T ss_pred CCCeEEEEEcCCCCCHH----HHHHHHHHHHHHcCCeEEEecCCcC---cHHHHHHHHHHH-HHcCCceecccCCCCHHH
Confidence 45666767653 44433 2344444555556777777877632 223456666676 66565431100
Q ss_pred ---e----cCCcceeEEEEcCCCC
Q 029204 180 ---K----VSQTYFLMLIIHVEGR 196 (197)
Q Consensus 180 ---d----~d~~g~~~~ii~~~G~ 196 (197)
+ ....+....|||..|+
T Consensus 210 v~~~ai~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 210 VAYDAIEHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCc
Confidence 0 0123456668888876
No 325
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=25.24 E-value=1.9e+02 Score=25.80 Aligned_cols=53 Identities=11% Similarity=0.200 Sum_probs=35.1
Q ss_pred CcEEEEEeCCCCC------CCCCCCHHHHHHHHHHhcCCccceEEecCCcceeEEEEcCCCC
Q 029204 141 GFEILAFPCNQFG------GQEPGSNPEIKEFACTRFKAEFPIFDKVSQTYFLMLIIHVEGR 196 (197)
Q Consensus 141 gv~vv~Is~d~~~------~~~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~~~ii~~~G~ 196 (197)
|++++.|+.+.-+ .+++...+++.+.+ ++.+.++-+..|.| +-++.++|.+|+
T Consensus 192 G~~v~~i~~~~d~~~~~~~~~~~~~l~~l~~~v-~~~~adlgia~DgD--aDR~~vvd~~G~ 250 (441)
T cd05805 192 GCDVVILNARLDEDAPRTDTERQRSLDRLGRIV-KALGADFGVIIDPN--GERLILVDEAGR 250 (441)
T ss_pred CCEEEEEecccCCccCCCCccchhHHHHHHHHH-HhCCCCEEEEEcCC--CCEEEEECCCCC
Confidence 6778777643211 01134556677777 77788888888776 667777888875
No 326
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=24.99 E-value=1.9e+02 Score=25.74 Aligned_cols=53 Identities=19% Similarity=0.299 Sum_probs=32.9
Q ss_pred CcEEEEEeCCC---CC----CCCCCCHHHHHHHHHHhcCCccceEEecCCcceeEEEEcCCCC
Q 029204 141 GFEILAFPCNQ---FG----GQEPGSNPEIKEFACTRFKAEFPIFDKVSQTYFLMLIIHVEGR 196 (197)
Q Consensus 141 gv~vv~Is~d~---~~----~~~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~~~ii~~~G~ 196 (197)
|++++.++.+. |. .+.+...+++.+.+ ++.+.++-+..|.| |-++.++|.+|+
T Consensus 188 g~~v~~~~~~~d~~f~~~~p~p~~~~l~~l~~~v-~~~~adlgia~D~D--gDR~~~vd~~G~ 247 (439)
T cd03087 188 GCKVITLNANPDGFFPGRPPEPTPENLSELMELV-RATGADLGIAHDGD--ADRAVFVDEKGR 247 (439)
T ss_pred CCEEEEECCcCCCCCCCCCCCCCHHHHHHHHHHH-HhcCCCEEEEEcCC--CceEEEECCCCC
Confidence 57777776431 11 11223444556676 67788888888776 556667888875
No 327
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=24.68 E-value=2.8e+02 Score=22.44 Aligned_cols=63 Identities=8% Similarity=0.093 Sum_probs=41.8
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEec
Q 029204 110 VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV 181 (197)
Q Consensus 110 ~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d~ 181 (197)
.++++.=+|....=....++..+..++.+++|+.|+-.+- .....+.+++ ++.+..-|++...
T Consensus 5 li~~DlDGTLl~~~~~i~~~~~~al~~~~~~g~~v~iaTG--------R~~~~~~~~~-~~l~~~~~~I~~N 67 (264)
T COG0561 5 LLAFDLDGTLLDSNKTISPETKEALARLREKGVKVVLATG--------RPLPDVLSIL-EELGLDGPLITFN 67 (264)
T ss_pred EEEEcCCCCccCCCCccCHHHHHHHHHHHHCCCEEEEECC--------CChHHHHHHH-HHcCCCccEEEeC
Confidence 3444444555544344556677777788888999988874 3557777777 7778887776644
No 328
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=24.30 E-value=2.3e+02 Score=23.39 Aligned_cols=42 Identities=24% Similarity=0.499 Sum_probs=29.9
Q ss_pred HHHHHHHHHHccC--CcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEE
Q 029204 128 SELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFD 179 (197)
Q Consensus 128 ~~L~~l~~~~~~~--gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~ 179 (197)
|.+.++.++|-++ |+.++++. ++.++.+..+ ++++...-+++
T Consensus 10 ~mVaeih~~yv~~~~gF~~vg~A---------~~~~ea~~~i-~~~~pDLILLD 53 (224)
T COG4565 10 PMVAEIHRRYVKQIPGFSVVGTA---------GTLEEAKMII-EEFKPDLILLD 53 (224)
T ss_pred hHHHHHHHHHHHhCCCceEEEee---------ccHHHHHHHH-HhhCCCEEEEe
Confidence 4556666666443 79999997 5788888888 77777665543
No 329
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=23.89 E-value=1.8e+02 Score=26.16 Aligned_cols=65 Identities=20% Similarity=0.246 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHccCCc--EEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEecCCcceeEEEE
Q 029204 126 NYSELSHLYEKYKTQGF--EILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVSQTYFLMLII 191 (197)
Q Consensus 126 ~~~~L~~l~~~~~~~gv--~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~~~ii 191 (197)
.+..|+++.++-...++ .++.|++|.-++| +.+.+.+++-.+--.+...|++-|...-..+.|.|
T Consensus 170 D~~kLe~lidevG~~nvp~I~~tiT~NsagGQ-pVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFI 236 (471)
T COG3033 170 DLEKLERLIDEVGADNVPYIVLTITNNSAGGQ-PVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFI 236 (471)
T ss_pred CHHHHHHHHHHhCcccCcEEEEEEeccccCCC-cchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhh
Confidence 46678888888776654 5667777766666 57777776633222244556666655444455543
No 330
>PF06616 BsuBI_PstI_RE: BsuBI/PstI restriction endonuclease C-terminus; InterPro: IPR009528 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the C terminus of bacterial enzymes similar to type II restriction endonucleases BsuBI and PstI (3.1.21.4 from EC). The enzymes of the BsuBI restriction/modification (R/M) system recognise the target sequence 5'CTGCAG and are functionally identical with those of the PstI R/M system [].; GO: 0000287 magnesium ion binding, 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 2IXS_B.
Probab=23.78 E-value=1.5e+02 Score=25.75 Aligned_cols=73 Identities=18% Similarity=0.194 Sum_probs=34.6
Q ss_pred cEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEEecCCccee
Q 029204 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFDKVSQTYFL 187 (197)
Q Consensus 109 k~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~d~d~~g~~ 187 (197)
..++|.-.++.-|+-.+-..+|.++.+.- ...++.|+.= .+...+++|+ .+.-+. +-.+. ..+
T Consensus 227 wl~liEaVtS~GPv~~kR~~eL~~l~~~~---~~g~vfVTAF-------~dr~~f~k~~-~~iAWeTevWiA-----d~P 290 (306)
T PF06616_consen 227 WLFLIEAVTSHGPVDPKRKRELEELFEGS---KAGLVFVTAF-------PDRKTFRKYL-SEIAWETEVWIA-----DEP 290 (306)
T ss_dssp EEEEEEE--TT----HHHHHHHHHHT-BT---TCEEEEEEEE-------SSHHHHGGGG-GGS-SSEEEEET-----TST
T ss_pred cEEEEEEEcCcCCCCHHHHHHHHHHHhcC---CCCeEEEEeC-------CCHHHHHHHH-HHhhccceEEEe-----cCC
Confidence 35888889999998877777777777765 2445555532 2445577776 332222 22221 123
Q ss_pred EEEEcCCCCC
Q 029204 188 MLIIHVEGRK 197 (197)
Q Consensus 188 ~~ii~~~G~~ 197 (197)
..+|+.||.|
T Consensus 291 dHmIhfNG~r 300 (306)
T PF06616_consen 291 DHMIHFNGDR 300 (306)
T ss_dssp T--EEE--GG
T ss_pred ceeEEecCcc
Confidence 3678878864
No 331
>KOG3363 consensus Uncharacterized conserved nuclear protein [Function unknown]
Probab=23.70 E-value=1.2e+02 Score=24.03 Aligned_cols=76 Identities=17% Similarity=0.311 Sum_probs=42.9
Q ss_pred cCCCCCcHHHH-HHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEecCCcceeEEEEcCCC
Q 029204 117 ASRCGLTPSNY-SELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVSQTYFLMLIIHVEG 195 (197)
Q Consensus 117 a~wC~~C~~~~-~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~~~ii~~~G 195 (197)
-+|-+..-..+ ++=-.+++..+-+ ++++-|.+.+-. +.+.-..++.+|+ +++|+...++...+. ....-+++.+|
T Consensus 87 lSW~v~~fedIt~dSLslF~tlePk-idlLIvG~Gd~~-~p~~v~~~V~~F~-k~~ki~lEi~dte~A-~aTfNfLNaEg 162 (196)
T KOG3363|consen 87 LSWSVRTFEDITTDSLSLFQTLEPK-IDLLIVGCGDKK-HPDKVRPSVRQFV-KSHKIKLEIVDTENA-AATFNFLNAEG 162 (196)
T ss_pred eeccCCChhhcCcchHhHhhhcCCC-ccEEEEecCCcC-CchhcCHHHHHHH-HHhCcceEEecchhh-hhHhhhccccc
Confidence 46887665443 3333455666554 555555554321 2223456789999 999999988764431 11222455555
Q ss_pred C
Q 029204 196 R 196 (197)
Q Consensus 196 ~ 196 (197)
|
T Consensus 163 R 163 (196)
T KOG3363|consen 163 R 163 (196)
T ss_pred c
Confidence 4
No 332
>PF09499 RE_ApaLI: ApaLI-like restriction endonuclease; InterPro: IPR019036 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes R.ApaLI and R.XbaI restriction endonucleases. ApaLI recognises and cleaves the sequence GTGCAC.
Probab=23.58 E-value=1.2e+02 Score=24.15 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=37.5
Q ss_pred chhccccccceEEEcC--CCCeEecC-------ccCC-cEEEEEEecCCCCCcHHHHHHHHHHHHHHcc
Q 029204 81 TAATEKSLYDFTVKDI--DGKDVPLS-------KFKG-KVLLIVNVASRCGLTPSNYSELSHLYEKYKT 139 (197)
Q Consensus 81 ~~~~g~~apdf~l~d~--~G~~v~l~-------~~~g-k~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~ 139 (197)
...++..+.++.++|. ||.-++-+ .-.| +|+.|+|+.+.-.--.+....|+.+|....+
T Consensus 106 Dclv~n~AyEiKwRdAtTdgdhi~kEhtrikvi~~aGy~PIrimf~~P~r~~~~~iq~~L~tlY~gvgG 174 (191)
T PF09499_consen 106 DCLVNNRAYEIKWRDATTDGDHITKEHTRIKVIKSAGYKPIRIMFYYPNREQAIRIQTTLKTLYNGVGG 174 (191)
T ss_pred EEeecCceEEEEEEecccCCChhhhHHHHHHHHHHCCCcceEEEEeCCCHHHHHHHHHHHHHHHHhcCc
Confidence 3456888999999986 44333211 1134 6999999876655555555677777766543
No 333
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=23.50 E-value=2.8e+02 Score=25.76 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=38.9
Q ss_pred cEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCC
Q 029204 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (197)
Q Consensus 109 k~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~ 173 (197)
|.++++|- ........-+..|.+++++++++|+++.-...+ +++++.+ ++.|+
T Consensus 495 ~~vIlD~~-~V~~iDsSg~~~L~~l~~~l~~~g~~l~l~~~~----------~~v~~~l-~~~gl 547 (563)
T TIGR00815 495 QVVILDMS-AVPHLDTSGIHALEELRKELKARGIQLLLANPN----------KAVRSTL-KRGGL 547 (563)
T ss_pred eEEEEECC-CCCcchHHHHHHHHHHHHHHHHcCCEEEEecCC----------hHHHHHH-HHCCc
Confidence 57888873 344566777899999999999999999988754 4566665 45443
No 334
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=23.47 E-value=2.4e+02 Score=20.61 Aligned_cols=45 Identities=7% Similarity=0.314 Sum_probs=26.4
Q ss_pred cEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEecCCcceeEEEEcCCCC
Q 029204 142 FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVSQTYFLMLIIHVEGR 196 (197)
Q Consensus 142 v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~~~ii~~~G~ 196 (197)
..-|-|+++ .+..++.+-+-++|.++..++..+ -+-.|+++.+|.
T Consensus 37 tK~VrVsS~-------~tt~eVI~~LLeKFk~d~~~~s~p---~FALYevh~nGe 81 (112)
T cd01782 37 TKCIRVSST-------ATTRDVIDTLSEKFRPDMRMLSNP---TYSLYEVHENGE 81 (112)
T ss_pred EEEEEEecC-------CCHHHHHHHHHHHhcccccccCCc---ceEEEEEecCCc
Confidence 345666655 344444444447888777665543 556677776663
No 335
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=23.12 E-value=2.4e+02 Score=18.78 Aligned_cols=36 Identities=8% Similarity=0.176 Sum_probs=26.1
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEE
Q 029204 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAF 147 (197)
Q Consensus 108 gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~I 147 (197)
.+++||-|+..+|. .+...+.++.+.+++. +.+..+
T Consensus 17 ~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~-~~F~~~ 52 (97)
T cd02981 17 DDVVVVGFFKDEES---EEYKTFEKVAESLRDD-YGFGHT 52 (97)
T ss_pred CCeEEEEEECCCCc---HHHHHHHHHHHhcccC-CeEEEE
Confidence 46889999999987 4677778888887654 555443
No 336
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=23.12 E-value=1.7e+02 Score=27.02 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHccCCcEEEEEeCC
Q 029204 126 NYSELSHLYEKYKTQGFEILAFPCN 150 (197)
Q Consensus 126 ~~~~L~~l~~~~~~~gv~vv~Is~d 150 (197)
...-|.+..++|+++|+.|.+|+.-
T Consensus 206 yA~Y~vkfi~aY~~~GI~i~aiT~Q 230 (496)
T PF02055_consen 206 YADYFVKFIQAYKKEGIPIWAITPQ 230 (496)
T ss_dssp HHHHHHHHHHHHHCTT--ESEEESS
T ss_pred HHHHHHHHHHHHHHCCCCeEEEecc
Confidence 3556777788999999999999973
No 337
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=23.00 E-value=4.3e+02 Score=23.88 Aligned_cols=73 Identities=16% Similarity=0.215 Sum_probs=41.5
Q ss_pred ecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEecC-----------Cc
Q 029204 116 VASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVS-----------QT 184 (197)
Q Consensus 116 ~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d~d-----------~~ 184 (197)
--++||-.. -+.++...+..+|..|..|++|.+ .....+.++.|. +..++++-+..|++ .+
T Consensus 213 GptGvGKTT----t~akLA~~l~~~g~~V~lItaDty---R~gAveQLk~ya-e~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 213 GQTGVGKTT----TLVKLGWQLLKQNRTVGFITTDTF---RSGAVEQFQGYA-DKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCCCCCHHH----HHHHHHHHHHHcCCeEEEEeCCcc---CccHHHHHHHHh-hcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 345666443 223333334445677777888742 334577888888 66666543333321 12
Q ss_pred ceeEEEEcCCCC
Q 029204 185 YFLMLIIHVEGR 196 (197)
Q Consensus 185 g~~~~ii~~~G~ 196 (197)
+....|||.-|+
T Consensus 285 ~~D~VLIDTAGr 296 (407)
T PRK12726 285 CVDHILIDTVGR 296 (407)
T ss_pred CCCEEEEECCCC
Confidence 356679998886
No 338
>PF08171 Mad3_BUB1_II: Mad3/BUB1 homology region 2; InterPro: IPR012572 This domain is required for cell cycle arrest induced by spindle assembly checkpoint (SPC) activation. It is also involved in the nuclear accumulation and kinetochore targeting of proteins Bub1p, Bub3p and Mad3p [].; GO: 0000075 cell cycle checkpoint, 0005634 nucleus; PDB: 2I3T_D 2I3S_F.
Probab=22.92 E-value=28 Score=23.23 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=0.0
Q ss_pred cceEEecCCcceeEE-EEcCCCCC
Q 029204 175 FPIFDKVSQTYFLML-IIHVEGRK 197 (197)
Q Consensus 175 fpi~~d~d~~g~~~~-ii~~~G~~ 197 (197)
+||+.|......+.| ||+..|+|
T Consensus 2 i~IF~D~~~~~~~vy~li~~~gkK 25 (68)
T PF08171_consen 2 IPIFKDESGRSGPVYKLIENPGKK 25 (68)
T ss_dssp ------------------------
T ss_pred cceEeCCCCCCCccEEEeeCCCCC
Confidence 567777765556666 77777765
No 339
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=22.91 E-value=1.6e+02 Score=24.16 Aligned_cols=40 Identities=10% Similarity=0.186 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCcc
Q 029204 127 YSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 175 (197)
Q Consensus 127 ~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~f 175 (197)
.|-+.+|....+++|.+++-|| +.-..+.++++.+.|+++
T Consensus 90 T~Gi~eLv~~L~~~~~~v~liS---------GGF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 90 TPGIRELVSRLHARGTQVYLIS---------GGFRQLIEPVAEQLGIPK 129 (227)
T ss_pred CCCHHHHHHHHHHcCCeEEEEc---------CChHHHHHHHHHHhCCcH
Confidence 4567788888888999999998 455677888877778877
No 340
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=22.83 E-value=2.9e+02 Score=20.35 Aligned_cols=49 Identities=12% Similarity=0.193 Sum_probs=31.5
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcC
Q 029204 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK 172 (197)
Q Consensus 112 lv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~ 172 (197)
+..|....|.-|+.-..-|++ +|+++-.+..- +++-+.+++++++ ++.+
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~-------~gi~~~~~d~~----~~p~t~~eL~~~l-~~~g 51 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKA-------SGHDVEVQDIL----KEPWHADTLRPYF-GNKP 51 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCcEEEecc----CCCcCHHHHHHHH-HHcC
Confidence 455667899999876555443 35555555432 3467888999988 4443
No 341
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=22.69 E-value=3.4e+02 Score=22.50 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHccCCcEEEEEeCCC
Q 029204 127 YSELSHLYEKYKTQGFEILAFPCNQ 151 (197)
Q Consensus 127 ~~~L~~l~~~~~~~gv~vv~Is~d~ 151 (197)
...|.++..+..+.|+.|++|.+|.
T Consensus 195 ~~~l~~iI~~l~~~g~~VvAivsD~ 219 (236)
T PF12017_consen 195 ADILKNIIEKLHEIGYNVVAIVSDM 219 (236)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4566777888889999999999984
No 342
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=22.64 E-value=3.1e+02 Score=22.91 Aligned_cols=60 Identities=17% Similarity=0.259 Sum_probs=38.6
Q ss_pred CCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEecCCcce
Q 029204 121 GLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVSQTYF 186 (197)
Q Consensus 121 ~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~ 186 (197)
+-=..++..|.+|.+...++|+.+=-|. |.| -.+.|+++.|+ ......+--+.-+|..|.
T Consensus 116 g~r~~QI~~l~~Lr~~L~~~g~~v~iVA-DEW----CNT~eDI~~F~-da~A~dmVQIKtPDLGgi 175 (248)
T PF07476_consen 116 GSREAQIEALAELREELDRRGINVEIVA-DEW----CNTLEDIREFA-DAKAADMVQIKTPDLGGI 175 (248)
T ss_dssp SSHHHHHHHHHHHHHHHHHCT--EEEEE--TT------SHHHHHHHH-HTT-SSEEEE-GGGGSST
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCeEEe-ehh----cCCHHHHHHHH-hcCCcCEEEecCCCccch
Confidence 3445678889999999998886665554 333 46899999998 555666666666776654
No 343
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=22.27 E-value=2.1e+02 Score=21.86 Aligned_cols=54 Identities=7% Similarity=0.092 Sum_probs=34.5
Q ss_pred HHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCc-cceEEe---cCCcceeEE
Q 029204 128 SELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFDK---VSQTYFLML 189 (197)
Q Consensus 128 ~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~-fpi~~d---~d~~g~~~~ 189 (197)
..+.++..+++. +.+||+|-+ + ....-.+.+|+ .+.|+. +|+--. .++-|.+.|
T Consensus 7 ~~i~~iL~~~K~--IAvVG~S~~----P-~r~sy~V~kyL-~~~GY~ViPVNP~~~~~eiLG~k~y 64 (140)
T COG1832 7 EDIAEILKSAKT--IAVVGASDK----P-DRPSYRVAKYL-QQKGYRVIPVNPKLAGEEILGEKVY 64 (140)
T ss_pred HHHHHHHHhCce--EEEEecCCC----C-CccHHHHHHHH-HHCCCEEEeeCcccchHHhcCchhh
Confidence 455666666654 999999865 2 35556677888 777876 666442 234455555
No 344
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=22.09 E-value=78 Score=27.18 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=13.4
Q ss_pred cCCCCCcHHHHHHHHHHHHHHcc
Q 029204 117 ASRCGLTPSNYSELSHLYEKYKT 139 (197)
Q Consensus 117 a~wC~~C~~~~~~L~~l~~~~~~ 139 (197)
.+|||.|- +...++.+.+...+
T Consensus 18 ~~~CpGCg-~~~i~~~i~~al~~ 39 (301)
T PRK05778 18 TTWCPGCG-NFGILNAIIQALAE 39 (301)
T ss_pred CCCCCCCC-ChHHHHHHHHHHHH
Confidence 46999997 44455555555443
No 345
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=21.82 E-value=3.2e+02 Score=24.63 Aligned_cols=82 Identities=9% Similarity=0.076 Sum_probs=45.6
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCC---C--CCCC---CCHHHHHHHHHHhcCCccceEE
Q 029204 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQF---G--GQEP---GSNPEIKEFACTRFKAEFPIFD 179 (197)
Q Consensus 108 gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~---~--~~~~---~~~~~~~~~~~~~~~~~fpi~~ 179 (197)
+--|+++.....- ....+.|-++.+++.- ++.++.+..+.- . .++| ...+++.+.+ ++.+.++-+..
T Consensus 170 ~lkVvvD~~~G~~---~~~~~~l~~~l~~lG~-~v~v~~~~~~pdg~F~~~~p~P~~~~~l~~l~~~v-~~~~adlGia~ 244 (456)
T PRK15414 170 PLKLVINSGNGAA---GPVVDAIEARFKALGA-PVELIKVHNTPDGNFPNGIPNPLLPECRDDTRNAV-IKHGADMGIAF 244 (456)
T ss_pred CCEEEEECCCCcc---hhhHHHHHHHHHhcCC-CeEEEEeecCCCCCCCCCCCCCCCHHHHHHHHHHH-HHcCCCEEEEE
Confidence 4345555432222 2234444444455432 357777764321 1 1122 2445567777 67788888888
Q ss_pred ecCCcceeEEEEcCCCC
Q 029204 180 KVSQTYFLMLIIHVEGR 196 (197)
Q Consensus 180 d~d~~g~~~~ii~~~G~ 196 (197)
|.| +-++.++|.+|+
T Consensus 245 DgD--aDR~~~vde~G~ 259 (456)
T PRK15414 245 DGD--FDRCFLFDEKGQ 259 (456)
T ss_pred CCC--cceEEEECCCCC
Confidence 776 667778898885
No 346
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=21.71 E-value=3.8e+02 Score=24.45 Aligned_cols=80 Identities=11% Similarity=0.204 Sum_probs=44.5
Q ss_pred cEEEEEEecC-CCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEecCC----
Q 029204 109 KVLLIVNVAS-RCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVSQ---- 183 (197)
Q Consensus 109 k~vlv~F~a~-wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d~d~---- 183 (197)
++-+|.|.+. .||-. ..+.+|...+..+|..|..|++|. +.....++++.|. +..++++-+..+.+.
T Consensus 240 ~~~vI~LVGptGvGKT----TTiaKLA~~L~~~GkkVglI~aDt---~RiaAvEQLk~ya-e~lgipv~v~~d~~~L~~a 311 (436)
T PRK11889 240 EVQTIALIGPTGVGKT----TTLAKMAWQFHGKKKTVGFITTDH---SRIGTVQQLQDYV-KTIGFEVIAVRDEAAMTRA 311 (436)
T ss_pred CCcEEEEECCCCCcHH----HHHHHHHHHHHHcCCcEEEEecCC---cchHHHHHHHHHh-hhcCCcEEecCCHHHHHHH
Confidence 3444555544 44432 234444455556677788888773 2234667777777 555554433333210
Q ss_pred -------cceeEEEEcCCCC
Q 029204 184 -------TYFLMLIIHVEGR 196 (197)
Q Consensus 184 -------~g~~~~ii~~~G~ 196 (197)
.+....|||..|+
T Consensus 312 L~~lk~~~~~DvVLIDTaGR 331 (436)
T PRK11889 312 LTYFKEEARVDYILIDTAGK 331 (436)
T ss_pred HHHHHhccCCCEEEEeCccc
Confidence 1346679998887
No 347
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=21.70 E-value=94 Score=28.87 Aligned_cols=26 Identities=15% Similarity=0.409 Sum_probs=22.5
Q ss_pred CeEecCccCCcEEEEEEecCCCCCcH
Q 029204 99 KDVPLSKFKGKVLLIVNVASRCGLTP 124 (197)
Q Consensus 99 ~~v~l~~~~gk~vlv~F~a~wC~~C~ 124 (197)
+.+.+++-.||++|=.--+..|+.|.
T Consensus 34 ~~I~i~~~~gkpvIsE~lCiGCGICv 59 (591)
T COG1245 34 ETIEIDEDTGKPVISEELCIGCGICV 59 (591)
T ss_pred eeEEecCCCCCceeEhhhhccchhhh
Confidence 56888888899988888899999997
No 348
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=21.57 E-value=2.4e+02 Score=19.44 Aligned_cols=60 Identities=18% Similarity=0.296 Sum_probs=37.6
Q ss_pred HHHHHHHHccCCcEEEEEeCCC---CCC-----CCCCCHHHHHHHHHHhcCCccceEEecCCcceeEEEEcCCC
Q 029204 130 LSHLYEKYKTQGFEILAFPCNQ---FGG-----QEPGSNPEIKEFACTRFKAEFPIFDKVSQTYFLMLIIHVEG 195 (197)
Q Consensus 130 L~~l~~~~~~~gv~vv~Is~d~---~~~-----~~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~~~ii~~~G 195 (197)
+.++.+++ |++++.++.+. |.. ++....+.+.+.+ ++.+..+-+..|.| +-++.++|.+|
T Consensus 37 ~~~ll~~l---g~~~~~~n~~~d~~f~~~~~p~p~~~~l~~~~~~v-~~~~ad~g~~~DgD--aDRl~~vd~~G 104 (104)
T PF02879_consen 37 LPRLLERL---GCDVIELNCDPDPDFPNQHAPNPEEESLQRLIKIV-RESGADLGIAFDGD--ADRLGVVDENG 104 (104)
T ss_dssp HHHHHHHT---TCEEEEESSS-STTGTTTSTSSTSTTTTHHHHHHH-HHSTTSEEEEE-TT--SSBEEEEETTS
T ss_pred HHHHHHHc---CCcEEEEecccccccccccccccccchhHHHHHHh-hccCceEEEEECCc--CceeEEECCCC
Confidence 44444553 56788886521 221 2224567777788 77788888888776 66777788776
No 349
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=21.50 E-value=2.6e+02 Score=19.68 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=26.9
Q ss_pred ecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCcc
Q 029204 116 VASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 175 (197)
Q Consensus 116 ~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~f 175 (197)
.-..|.-|+..+.-|+ ++|+++..++.- +++-+.+++.+++ +..|..+
T Consensus 2 ~~~~C~t~rka~~~L~-------~~gi~~~~~d~~----k~p~s~~el~~~l-~~~~~~~ 49 (110)
T PF03960_consen 2 GNPNCSTCRKALKWLE-------ENGIEYEFIDYK----KEPLSREELRELL-SKLGNGP 49 (110)
T ss_dssp E-TT-HHHHHHHHHHH-------HTT--EEEEETT----TS---HHHHHHHH-HHHTSSG
T ss_pred cCCCCHHHHHHHHHHH-------HcCCCeEeehhh----hCCCCHHHHHHHH-HHhcccH
Confidence 4567888875554443 357777777764 4467889999988 6666543
No 350
>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU. Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.
Probab=21.46 E-value=2.7e+02 Score=23.75 Aligned_cols=41 Identities=22% Similarity=0.467 Sum_probs=26.3
Q ss_pred CCCCeEecCccCCcEEEEEEecC--CCCCcHHHHHHHHHHHHH
Q 029204 96 IDGKDVPLSKFKGKVLLIVNVAS--RCGLTPSNYSELSHLYEK 136 (197)
Q Consensus 96 ~~G~~v~l~~~~gk~vlv~F~a~--wC~~C~~~~~~L~~l~~~ 136 (197)
.+|..+.+-++++..|.|-|-+. .||.-...+..+++...+
T Consensus 237 ~dGGdv~lv~v~~~~v~v~l~GaC~gC~~s~~Tl~~Ie~~l~~ 279 (290)
T TIGR02000 237 ADGGDVELYDVDGKIVYVVLTGACSGCSMSTMTLKGIQQRLRE 279 (290)
T ss_pred hcCCcEEEEEEeCCEEEEEEeeCCCCCcchHHHHHHHHHHHHH
Confidence 47888999888887777777643 555544444445444433
No 351
>KOG3323 consensus D-Tyr-tRNA (Tyr) deacylase [Translation, ribosomal structure and biogenesis]
Probab=21.45 E-value=1.4e+02 Score=22.90 Aligned_cols=46 Identities=9% Similarity=0.270 Sum_probs=27.7
Q ss_pred cEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEecCCcceeEEEEcCCCC
Q 029204 142 FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVSQTYFLMLIIHVEGR 196 (197)
Q Consensus 142 v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~~~ii~~~G~ 196 (197)
+..|+|..| |+.+++.... +.=++.-++.|...++++--|.|.+|.
T Consensus 28 ~vlvgi~~~-------dt~ed~~kmv--rkiLnlrlfe~es~k~w~ksv~dl~~e 73 (149)
T KOG3323|consen 28 CVLVGISKD-------DTEEDLEKMV--RKILNLRLFEDESGKGWKKSVMDLNGE 73 (149)
T ss_pred EEEEEEccC-------CCHHHHHHHH--HHHhheeeccccccCcccchhhhCCCC
Confidence 566788766 5666666554 224556666655566766666665553
No 352
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=21.32 E-value=4e+02 Score=21.20 Aligned_cols=75 Identities=11% Similarity=0.185 Sum_probs=46.7
Q ss_pred CCCCeEecCccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCcc
Q 029204 96 IDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 175 (197)
Q Consensus 96 ~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~f 175 (197)
..+..|.++++.-- .++---++.|-.--..-.+++.|..+++=+..++|.|+-+. +.-.+-+++|+++...-..
T Consensus 23 l~~i~v~~e~we~~-~~~~~~~~~~~i~~a~~~eid~l~~e~Gyk~~Dvvsv~~~~-----pk~del~akF~~EH~H~d~ 96 (181)
T COG1791 23 LSKIEVSFERWEAT-ALIKHGAEKEHIIDAYETEIDRLIRERGYKNRDVVSVSPSN-----PKLDELRAKFLQEHLHTDD 96 (181)
T ss_pred cccceeEhhhhhhc-cccccCcchhhhHhhHHHHHHHHHHhhCCceeeEEEeCCCC-----ccHHHHHHHHHHHhccCCc
Confidence 34455666665521 11111166776655677899999999888889999998652 4555666778844443333
Q ss_pred c
Q 029204 176 P 176 (197)
Q Consensus 176 p 176 (197)
-
T Consensus 97 E 97 (181)
T COG1791 97 E 97 (181)
T ss_pred e
Confidence 3
No 353
>COG0224 AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion]
Probab=21.24 E-value=4.6e+02 Score=22.47 Aligned_cols=39 Identities=23% Similarity=0.544 Sum_probs=29.9
Q ss_pred cEEEEEEecC--CCC-CcHHHHHHHHHHHHHHccCCc--EEEEE
Q 029204 109 KVLLIVNVAS--RCG-LTPSNYSELSHLYEKYKTQGF--EILAF 147 (197)
Q Consensus 109 k~vlv~F~a~--wC~-~C~~~~~~L~~l~~~~~~~gv--~vv~I 147 (197)
|+.+|++.++ -|| +|...+..+.+..++++++|. .++.|
T Consensus 72 r~~~IviTSDrGLcG~~Nsni~k~~~~~i~~~~~~~~~~~li~i 115 (287)
T COG0224 72 RVLYIVITSDRGLCGGFNSNIFKKVENLIKELKNKGKEVKLILI 115 (287)
T ss_pred ceEEEEEecCcchhhhhhHHHHHHHHHHHHhhhccCCceEEEEE
Confidence 4677777766 677 788888999999999999884 55555
No 354
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=21.23 E-value=2.8e+02 Score=19.69 Aligned_cols=23 Identities=17% Similarity=0.475 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHccCCcEEEEEeC
Q 029204 127 YSELSHLYEKYKTQGFEILAFPC 149 (197)
Q Consensus 127 ~~~L~~l~~~~~~~gv~vv~Is~ 149 (197)
.+.+.++.++++++|+.++.++-
T Consensus 27 ~~~v~~~l~~L~~~g~~l~i~Sn 49 (132)
T TIGR01662 27 YPEVPDALAELKEAGYKVVIVTN 49 (132)
T ss_pred CCCHHHHHHHHHHCCCEEEEEEC
Confidence 45556666666666777777764
No 355
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=21.13 E-value=2e+02 Score=19.95 Aligned_cols=11 Identities=9% Similarity=-0.149 Sum_probs=6.2
Q ss_pred ceeEEEEcCCC
Q 029204 185 YFLMLIIHVEG 195 (197)
Q Consensus 185 g~~~~ii~~~G 195 (197)
+...|+.|.+|
T Consensus 100 ~~~~~~~DPdG 110 (121)
T cd09013 100 GKAYRFRSPDG 110 (121)
T ss_pred cceEEEECCCC
Confidence 33455666665
No 356
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=20.84 E-value=1.7e+02 Score=22.86 Aligned_cols=44 Identities=18% Similarity=0.276 Sum_probs=30.5
Q ss_pred cHHHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHH
Q 029204 123 TPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (197)
Q Consensus 123 C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~ 167 (197)
......++.+..++++++|++-|+|+.-. ..-.++....+++.+
T Consensus 129 ~~ld~~~v~~~~~~l~~~gv~avAV~~~f-S~~np~hE~~v~eii 172 (176)
T PF05378_consen 129 EPLDEDEVREALRELKDKGVEAVAVSLLF-SYRNPEHEQRVAEII 172 (176)
T ss_pred cCCCHHHHHHHHHHHHhCCCCEEEEECcc-CCCCHHHHHHHHHHH
Confidence 34446789999999999999999998632 222345556666666
No 357
>PF02941 FeThRed_A: Ferredoxin thioredoxin reductase variable alpha chain; InterPro: IPR004207 Ferredoxin thioredoxin reductase is a [4FE-4S] protein which plays an important role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin), regulating enzymes by reduction of specific disulphide groups. It catalyses the light-dependent activation of several photosynthetis enzymes. Ferredoxin thioredoxin reductase is a heterodimer of subunit a and subunit b. Subunit a is the variable subunit, and b is the catalytic chain. This family is the alpha chain.; GO: 0008937 ferredoxin-NAD(P) reductase activity, 0015979 photosynthesis, 0009536 plastid; PDB: 2PUK_B 2PVO_B 2PVG_B 1DJ7_B 2PVD_B 2PU9_B 2PUO_B.
Probab=20.65 E-value=63 Score=21.46 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=19.3
Q ss_pred cccccceEEEcCCCCeEec-CccCCc------EEEEEEe
Q 029204 85 EKSLYDFTVKDIDGKDVPL-SKFKGK------VLLIVNV 116 (197)
Q Consensus 85 g~~apdf~l~d~~G~~v~l-~~~~gk------~vlv~F~ 116 (197)
....+.|.++..+|+.... .+++|| |++|.|-
T Consensus 18 ~hr~~~fDl~G~EGev~~~v~~wkGr~iSanlP~~V~F~ 56 (67)
T PF02941_consen 18 EHRNPPFDLKGMEGEVKQIVTDWKGRPISANLPVKVQFD 56 (67)
T ss_dssp TSTTS-EE-TT-EEEEEEE-SEETTEE---SS-EEEEET
T ss_pred cccCCCccccCCEEEEEEEEeecCCcEecCCCcEEEEEe
Confidence 3456778888888876543 678888 5677764
No 358
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=20.64 E-value=3.2e+02 Score=23.21 Aligned_cols=59 Identities=17% Similarity=0.297 Sum_probs=36.4
Q ss_pred EEEEe-cCCCCCcHHHHHHH----HHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEE
Q 029204 112 LIVNV-ASRCGLTPSNYSEL----SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFD 179 (197)
Q Consensus 112 lv~F~-a~wC~~C~~~~~~L----~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~ 179 (197)
+||+. .-.||+-.+.-..| .++.+.+.++++.++-|.||. -.....+.+.++| ++|++.
T Consensus 33 ~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~ik~lVIACNT-------ASa~al~~LR~~~--~iPVvG 96 (269)
T COG0796 33 IIYVGDTARFPYGEKSEEEIRERTLEIVDFLLERGIKALVIACNT-------ASAVALEDLREKF--DIPVVG 96 (269)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEecch-------HHHHHHHHHHHhC--CCCEEE
Confidence 44444 34677654444333 445677788889999999982 3344455664555 777764
No 359
>PRK06740 histidinol-phosphatase; Validated
Probab=20.60 E-value=3.7e+02 Score=23.28 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHccCCcE-EEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEE
Q 029204 126 NYSELSHLYEKYKTQGFE-ILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFD 179 (197)
Q Consensus 126 ~~~~L~~l~~~~~~~gv~-vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~ 179 (197)
...+++++.++|++.+++ .+||-+|.+ ++..+.+++++ ..+.++|-|..
T Consensus 124 Y~~ei~~LkekY~~~~I~Il~GlE~dy~----~~~~~~~~~~l-~~~~~DyvIgS 173 (331)
T PRK06740 124 FTKAIEEAKERWSKRGVTLKLGIEADYF----IGGEQELQSLL-ALGDFDYVIGS 173 (331)
T ss_pred HHHHHHHHHHHhccCCCeEEEEEEeccC----CCcHHHHHHHH-hcCCCCEEEEe
Confidence 345777888888754464 578877753 35567778777 66777777664
No 360
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=20.40 E-value=1.6e+02 Score=25.55 Aligned_cols=12 Identities=8% Similarity=0.158 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHc
Q 029204 127 YSELSHLYEKYK 138 (197)
Q Consensus 127 ~~~L~~l~~~~~ 138 (197)
...|+++.+|..
T Consensus 83 ~~KL~~v~kEI~ 94 (312)
T KOG1014|consen 83 QEKLEAVAKEIE 94 (312)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 361
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=20.36 E-value=2.7e+02 Score=21.19 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCCccceEEecCCcceeE
Q 029204 127 YSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVSQTYFLM 188 (197)
Q Consensus 127 ~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~~ 188 (197)
++.+..+..+.+++||..+-++-. -.++-+++++ +.+++...-...+-.++++.
T Consensus 46 Y~Di~rIL~dLk~~GVtl~~ASRt-------~ap~iA~q~L-~~fkvk~~Gvlkps~e~ft~ 99 (144)
T KOG4549|consen 46 YDDIRRILVDLKKLGVTLIHASRT-------MAPQIASQGL-ETFKVKQTGVLKPSLEEFTF 99 (144)
T ss_pred ccchhHHHHHHHhcCcEEEEecCC-------CCHHHHHHHH-HHhccCcccccchhhhcCce
Confidence 578888899999999999988754 3566677777 77777655554554444433
No 362
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=20.35 E-value=2.6e+02 Score=21.19 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=24.5
Q ss_pred HHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHH
Q 029204 129 ELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (197)
Q Consensus 129 ~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~ 167 (197)
-+-++...|+++|++|++.-.-+ -+.+.+.++.
T Consensus 18 LIG~IisrfE~~Glkiva~K~~~------~~~e~Ae~~Y 50 (135)
T COG0105 18 LIGEIISRFEKKGLKIVALKMVQ------LSRELAENHY 50 (135)
T ss_pred hHHHHHHHHHHCCCEEEeeeeec------cCHHHHHHHH
Confidence 45678888999999999998753 4566666654
No 363
>PRK14320 glmM phosphoglucosamine mutase; Provisional
Probab=20.24 E-value=2.8e+02 Score=24.83 Aligned_cols=53 Identities=19% Similarity=0.209 Sum_probs=34.1
Q ss_pred CcEEEEEeCCCCC---CCC--CCCHHHHHHHHHHhcCCccceEEecCCcceeEEEEcCCCC
Q 029204 141 GFEILAFPCNQFG---GQE--PGSNPEIKEFACTRFKAEFPIFDKVSQTYFLMLIIHVEGR 196 (197)
Q Consensus 141 gv~vv~Is~d~~~---~~~--~~~~~~~~~~~~~~~~~~fpi~~d~d~~g~~~~ii~~~G~ 196 (197)
|++++.|+.+.-+ .++ +...+++++.+ ++.+.++-+..|.| +-++.++|.+|+
T Consensus 196 g~~v~~i~~~~dg~~~~~~~~~~~l~~l~~~v-~~~~adlGia~DgD--aDR~~~vd~~G~ 253 (443)
T PRK14320 196 GINYVSIASNPDGLNINVGCGATCVSNIKKAV-KEQKADLGISLDGD--ADRIIIVDENGQ 253 (443)
T ss_pred CCcEEEECCcCCCCCCCCCCchHhHHHHHHHH-HHcCCCEEEEECCC--CceEEEECCCCc
Confidence 5777777654111 111 14556667777 67788888887766 667778888875
No 364
>PHA03357 Alkaline exonuclease; Provisional
Probab=20.19 E-value=43 Score=22.72 Aligned_cols=28 Identities=32% Similarity=0.481 Sum_probs=17.4
Q ss_pred cCCCCCcHHHHHHHHHHHHHHccCCcEEEEEeCCCC
Q 029204 117 ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQF 152 (197)
Q Consensus 117 a~wC~~C~~~~~~L~~l~~~~~~~gv~vv~Is~d~~ 152 (197)
..||+.|.+ +.+.--..-++|+++.|.|
T Consensus 10 gg~C~~CkR--------~N~LvT~sGetvaLdad~F 37 (81)
T PHA03357 10 GGICGLCKR--------YNELVTCDGETLALNADCF 37 (81)
T ss_pred Cceechhcc--------cCeEEecCCcEEEeChhhh
Confidence 579999963 2222233467888877644
No 365
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=20.01 E-value=2.8e+02 Score=18.81 Aligned_cols=40 Identities=15% Similarity=0.246 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHccCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHhcCC
Q 029204 125 SNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (197)
Q Consensus 125 ~~~~~L~~l~~~~~~~gv~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~ 173 (197)
...+.+.++.++++++|+.++.++.. ..+.+..++ ++.++
T Consensus 24 ~~~~~~~~~l~~l~~~g~~i~ivS~~--------~~~~~~~~~-~~~~~ 63 (139)
T cd01427 24 ELYPGVKEALKELKEKGIKLALATNK--------SRREVLELL-EELGL 63 (139)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCc--------hHHHHHHHH-HHcCC
Confidence 45667777788888888999888843 466666676 66666
Done!