BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029206
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 36/50 (72%)
Query: 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLL 160
+CA+CL + DGE+ R LP+C HGFH C+D WL SHS+CP CR +++
Sbjct: 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 113 DCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQPTSSD 167
+C +C D+ GE VR LP CNH FH CI WL H SCP CR+SL Q T+++
Sbjct: 17 ECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 96 QIPVAVYGAAGVKIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTC 155
Q+P + + + T C +C+ DF + +RVLP CNH FH +C+D WL ++ +CP C
Sbjct: 8 QLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPIC 66
Query: 156 R 156
R
Sbjct: 67 R 67
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 114 CAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCR 156
C ICL +GE VR LP C H FH C+D WL+++ CP CR
Sbjct: 17 CTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICR 58
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 102 YGAAGVKIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCR 156
+GA G + C IC +++ G+ LP C+H FH C+ WL +CP CR
Sbjct: 34 HGAVG---QEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCR 84
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 114 CAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161
CA+CL DF +++ + P C H FH +C+ WL CP C +L
Sbjct: 18 CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 103 GAAGVKIKATD---CAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSL 159
G++G + TD C IC MDG +LP C H F +CID W H +CP CR +
Sbjct: 4 GSSGRVKQLTDEEECCIC----MDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQM 58
Query: 160 LDQPTSS 166
SS
Sbjct: 59 TGANESS 65
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Query: 109 IKATDCAICLVDFMDG-----------EKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRR 157
++ CAIC V MD + V V +CNH FH C+ W+ ++ CP C++
Sbjct: 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQ 72
Query: 158 SLLDQ 162
+ Q
Sbjct: 73 DWVVQ 77
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 113 DCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQPTSSDAAEMD 172
C IC F++ V C H F CI+ W+ CP CR+ D + + + +D
Sbjct: 55 QCIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRK---DIKSKTYSLVLD 107
Query: 173 SEIRHPGNPPGGE 185
+ I N E
Sbjct: 108 NXINKMVNNLSSE 120
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 113 DCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQPTS 165
C IC F++ V C H F CI+ W+ CP CR+ + + S
Sbjct: 55 QCIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYS 103
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 113 DCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQPTS 165
C IC F++ V C H F CI+ W+ CP CR+ + + S
Sbjct: 66 QCIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYS 114
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 16/80 (20%)
Query: 88 GLKKSALRQIPVAVYGAAGVKIKATDCAICLVDFMD--------------GEKVRVLPKC 133
G K+ +++ A + + +CAIC MD E C
Sbjct: 18 GKKRFEVKKWNAVALWAWDIVVD--NCAICRNHIMDLCIECQANQASATSEECTVAWGVC 75
Query: 134 NHGFHVRCIDTWLMSHSSCP 153
NH FH CI WL + CP
Sbjct: 76 NHAFHFHCISRWLKTRQVCP 95
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 14/59 (23%)
Query: 109 IKATDCAICLVDFMD-------------GEKVRV-LPKCNHGFHVRCIDTWLMSHSSCP 153
I +CAIC MD E+ V CNH FH CI WL + CP
Sbjct: 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 104
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 14/59 (23%)
Query: 109 IKATDCAICLVDFMD-------------GEKVRV-LPKCNHGFHVRCIDTWLMSHSSCP 153
I +CAIC MD E+ V CNH FH CI WL + CP
Sbjct: 29 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 87
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 16/80 (20%)
Query: 88 GLKKSALRQIPVAVYGAAGVKIKATDCAICLVDFMD--------------GEKVRVLPKC 133
G K+ +++ A + + +CAIC MD E C
Sbjct: 16 GKKRFEVKKWNAVALWAWDIVVD--NCAICRNHIMDLCIECQANQASATSEECTVAWGVC 73
Query: 134 NHGFHVRCIDTWLMSHSSCP 153
NH FH CI WL + CP
Sbjct: 74 NHAFHFHCISRWLKTRQVCP 93
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 14/59 (23%)
Query: 109 IKATDCAICLVDFMD-------------GEKVRV-LPKCNHGFHVRCIDTWLMSHSSCP 153
I +CAIC MD E+ V CNH FH CI WL + CP
Sbjct: 27 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 85
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 133 CNHGFHVRCIDTWLMSHSSCP 153
CNH FH CI WL + CP
Sbjct: 73 CNHAFHFHCISRWLKTRQVCP 93
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 133 CNHGFHVRCIDTWLMSHSSCP 153
CNH FH CI WL + CP
Sbjct: 57 CNHAFHFHCISRWLKTRQVCP 77
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 114 CAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTC 155
C IC F ++P+C+H + CI +L + CPTC
Sbjct: 25 CGICFEYF---NIAMIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 30.8 bits (68), Expect = 0.50, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 114 CAICL---VDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSL 159
C IC+ + + ++ V +C H F +C+ L + ++CPTCR+ +
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 103 GAAGVKIKAT-DCAICL---VDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRS 158
G G++ T C IC+ + + ++ V +C H F +C+ L + ++CPTCR+
Sbjct: 1 GTTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKK 60
Query: 159 L 159
+
Sbjct: 61 I 61
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 114 CAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS-HSSCPTCRRSLLDQ 162
C ICL D + + +C H F CI T L S + CPTCR+ L+ +
Sbjct: 57 CPICL-DML--KNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 103
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCR 156
A C ICL D LP C H F CI W+ + +CP C+
Sbjct: 5 AERCPICLED--PSNYSMALP-CLHAFCYVCITRWIRQNPTCPLCK 47
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 114 CAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS-HSSCPTCRRSLLDQ 162
C ICL D + + +C H F CI T L S + CPTCR+ L+ +
Sbjct: 56 CPICL-DML--KNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 102
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 114 CAICL---VDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSL 159
C IC+ + + ++ V +C H F +C+ L + ++CPTCR+ +
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 19/50 (38%)
Query: 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRS 158
+ +C ICL D V + C H H C + L CP C S
Sbjct: 3 VSQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMHS 52
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 113 DCAICL---VDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSL 159
C IC+ + + ++ V +C H F +C+ L + ++CPTCR+ +
Sbjct: 9 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 113 DCAICL---VDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSL 159
C IC+ + + ++ V +C H F +C+ L + ++CPTCR+ +
Sbjct: 74 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123
>pdb|1ZT2|A Chain A, Heterodimeric Structure Of The Core Primase.
pdb|1ZT2|C Chain C, Heterodimeric Structure Of The Core Primase
Length = 330
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 10/64 (15%)
Query: 124 GEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQPTSSDAAEMDSEIRHPGNPPG 183
G K +V N GFHV+ +D + +C +LLD + AE I PG P G
Sbjct: 165 GLKPKVYFSGNRGFHVQ-VDCY----GNC-----ALLDSDERKEIAEYVMGIGVPGYPGG 214
Query: 184 GEQA 187
E A
Sbjct: 215 SENA 218
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 114 CAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS-HSSCPTCRRSLLDQ 162
C ICL D + + +C H F CI T L S + CPTCR+ L+ +
Sbjct: 37 CPICL-DML--KNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 83
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTC 155
++ C ICL D V + C H H C + L CP C
Sbjct: 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,498,439
Number of Sequences: 62578
Number of extensions: 181971
Number of successful extensions: 518
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 485
Number of HSP's gapped (non-prelim): 45
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)