Query 029206
Match_columns 197
No_of_seqs 175 out of 1826
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 09:12:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029206.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029206hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.9 1.2E-22 2.6E-27 171.8 8.2 83 85-168 203-286 (348)
2 PF13639 zf-RING_2: Ring finge 99.7 3.3E-17 7.2E-22 100.0 2.1 44 112-156 1-44 (44)
3 COG5243 HRD1 HRD ubiquitin lig 99.5 5.9E-14 1.3E-18 118.6 6.9 52 108-160 284-345 (491)
4 PHA02929 N1R/p28-like protein; 99.5 4.3E-14 9.3E-19 115.1 5.5 75 86-160 147-227 (238)
5 PF12678 zf-rbx1: RING-H2 zinc 99.5 6.2E-14 1.4E-18 94.6 4.0 45 111-156 19-73 (73)
6 COG5540 RING-finger-containing 99.4 1E-13 2.2E-18 114.3 3.1 52 109-161 321-373 (374)
7 cd00162 RING RING-finger (Real 99.2 2.8E-11 6.1E-16 72.8 3.7 44 113-159 1-45 (45)
8 KOG0317 Predicted E3 ubiquitin 99.2 3.6E-11 7.9E-16 98.9 5.4 51 108-162 236-286 (293)
9 PF13920 zf-C3HC4_3: Zinc fing 99.1 3.1E-11 6.8E-16 75.4 3.2 46 111-160 2-48 (50)
10 PF13923 zf-C3HC4_2: Zinc fing 99.1 4.4E-11 9.6E-16 70.9 3.1 39 114-155 1-39 (39)
11 PLN03208 E3 ubiquitin-protein 99.1 9.6E-11 2.1E-15 92.1 5.8 49 109-161 16-80 (193)
12 KOG0802 E3 ubiquitin ligase [P 99.1 4.6E-11 9.9E-16 108.7 3.0 54 109-163 289-344 (543)
13 PF12861 zf-Apc11: Anaphase-pr 99.1 7.7E-11 1.7E-15 80.8 3.2 51 111-161 21-83 (85)
14 PHA02926 zinc finger-like prot 99.0 9.4E-11 2E-15 93.4 2.4 53 108-160 167-230 (242)
15 PF14634 zf-RING_5: zinc-RING 99.0 2.6E-10 5.6E-15 69.3 3.3 44 113-157 1-44 (44)
16 KOG0320 Predicted E3 ubiquitin 99.0 1.7E-10 3.8E-15 88.8 2.6 53 108-162 128-180 (187)
17 PF00097 zf-C3HC4: Zinc finger 98.9 5.8E-10 1.3E-14 66.6 2.5 39 114-155 1-41 (41)
18 KOG0823 Predicted E3 ubiquitin 98.9 7.1E-10 1.5E-14 88.8 3.4 51 108-162 44-97 (230)
19 COG5194 APC11 Component of SCF 98.9 6.7E-10 1.4E-14 74.4 2.3 52 112-164 21-85 (88)
20 smart00184 RING Ring finger. E 98.9 1.8E-09 3.9E-14 62.6 3.2 38 114-155 1-39 (39)
21 PF15227 zf-C3HC4_4: zinc fing 98.8 1.8E-09 4E-14 64.9 2.6 38 114-155 1-42 (42)
22 smart00504 Ubox Modified RING 98.8 4.9E-09 1.1E-13 68.2 4.2 46 112-161 2-47 (63)
23 KOG1493 Anaphase-promoting com 98.8 7.6E-10 1.7E-14 73.5 -0.4 50 111-160 20-81 (84)
24 KOG1734 Predicted RING-contain 98.7 3.2E-09 7E-14 86.7 0.6 52 108-160 221-281 (328)
25 TIGR00599 rad18 DNA repair pro 98.7 1.8E-08 4E-13 87.7 4.0 50 108-161 23-72 (397)
26 KOG0828 Predicted E3 ubiquitin 98.7 2.9E-08 6.3E-13 87.0 5.2 51 110-161 570-635 (636)
27 smart00744 RINGv The RING-vari 98.7 2.1E-08 4.5E-13 62.3 3.0 42 113-156 1-49 (49)
28 COG5574 PEX10 RING-finger-cont 98.6 1.8E-08 4E-13 82.2 2.4 50 109-162 213-264 (271)
29 PF13445 zf-RING_UBOX: RING-ty 98.5 4.8E-08 1E-12 58.9 2.4 34 114-149 1-35 (43)
30 KOG2930 SCF ubiquitin ligase, 98.5 6.2E-08 1.4E-12 68.1 1.5 52 110-162 45-110 (114)
31 KOG2164 Predicted E3 ubiquitin 98.4 1.2E-07 2.7E-12 83.6 3.1 47 111-161 186-237 (513)
32 PF11793 FANCL_C: FANCL C-term 98.4 4.8E-08 1E-12 65.3 -0.1 51 111-161 2-67 (70)
33 KOG0804 Cytoplasmic Zn-finger 98.4 9.8E-08 2.1E-12 83.0 1.7 50 108-160 172-222 (493)
34 COG5219 Uncharacterized conser 98.3 1.7E-07 3.8E-12 87.6 0.6 58 103-160 1461-1523(1525)
35 TIGR00570 cdk7 CDK-activating 98.3 7.2E-07 1.6E-11 75.1 3.8 52 111-163 3-57 (309)
36 KOG0287 Postreplication repair 98.2 3.9E-07 8.4E-12 76.9 1.4 49 112-164 24-72 (442)
37 KOG0827 Predicted E3 ubiquitin 98.2 5.9E-07 1.3E-11 76.9 1.9 46 112-157 5-53 (465)
38 KOG2177 Predicted E3 ubiquitin 98.2 7.6E-07 1.6E-11 73.4 1.7 44 109-156 11-54 (386)
39 KOG4265 Predicted E3 ubiquitin 98.1 1.8E-06 3.9E-11 73.4 2.9 49 109-161 288-337 (349)
40 PF04564 U-box: U-box domain; 98.1 1.7E-06 3.6E-11 58.2 2.1 48 111-162 4-52 (73)
41 COG5432 RAD18 RING-finger-cont 98.0 2.4E-06 5.1E-11 70.9 2.1 48 111-162 25-72 (391)
42 KOG1039 Predicted E3 ubiquitin 98.0 3.1E-06 6.7E-11 72.6 2.2 51 109-159 159-220 (344)
43 KOG0825 PHD Zn-finger protein 98.0 1.3E-06 2.8E-11 80.5 -0.4 50 111-161 123-172 (1134)
44 PF14835 zf-RING_6: zf-RING of 97.9 2.4E-06 5.2E-11 55.4 0.2 47 112-163 8-54 (65)
45 KOG1645 RING-finger-containing 97.9 1E-05 2.2E-10 69.8 3.3 47 111-157 4-53 (463)
46 KOG4445 Uncharacterized conser 97.8 4.1E-06 8.9E-11 69.7 0.4 56 109-165 113-191 (368)
47 KOG0824 Predicted E3 ubiquitin 97.7 2.5E-05 5.4E-10 65.1 2.8 51 111-165 7-58 (324)
48 KOG0978 E3 ubiquitin ligase in 97.6 1.5E-05 3.3E-10 73.6 1.0 47 111-161 643-690 (698)
49 KOG1571 Predicted E3 ubiquitin 97.6 5.9E-06 1.3E-10 70.4 -1.7 44 110-160 304-347 (355)
50 KOG4172 Predicted E3 ubiquitin 97.6 1.3E-05 2.8E-10 50.1 0.3 46 111-160 7-54 (62)
51 KOG0311 Predicted E3 ubiquitin 97.6 8E-06 1.7E-10 69.4 -1.2 56 108-166 40-96 (381)
52 PF05883 Baculo_RING: Baculovi 97.4 4.9E-05 1.1E-09 56.5 0.9 44 111-155 26-75 (134)
53 PF12906 RINGv: RING-variant d 97.4 0.00011 2.4E-09 45.1 2.2 40 114-155 1-47 (47)
54 KOG0801 Predicted E3 ubiquitin 97.4 5E-05 1.1E-09 58.0 0.6 42 98-140 164-205 (205)
55 KOG1941 Acetylcholine receptor 97.3 8.2E-05 1.8E-09 64.2 1.5 46 111-157 365-413 (518)
56 PHA02862 5L protein; Provision 97.3 0.00016 3.4E-09 54.3 2.2 47 111-162 2-55 (156)
57 KOG1785 Tyrosine kinase negati 97.3 9.1E-05 2E-09 64.1 1.0 43 113-159 371-415 (563)
58 KOG3970 Predicted E3 ubiquitin 97.2 0.00033 7.1E-09 56.4 3.5 56 111-168 50-113 (299)
59 KOG4159 Predicted E3 ubiquitin 97.2 0.00025 5.4E-09 62.2 3.0 49 109-161 82-130 (398)
60 PHA02825 LAP/PHD finger-like p 97.2 0.00031 6.8E-09 53.6 3.2 50 108-161 5-60 (162)
61 PF11789 zf-Nse: Zinc-finger o 97.2 0.0004 8.6E-09 44.4 3.1 42 110-154 10-53 (57)
62 KOG0297 TNF receptor-associate 97.1 0.00025 5.5E-09 62.3 2.2 54 109-165 19-72 (391)
63 KOG1814 Predicted E3 ubiquitin 97.0 0.0011 2.4E-08 57.6 4.6 47 110-157 183-237 (445)
64 KOG3039 Uncharacterized conser 96.9 0.001 2.2E-08 54.2 3.5 52 111-162 221-272 (303)
65 KOG1428 Inhibitor of type V ad 96.8 0.0007 1.5E-08 66.7 2.7 51 108-159 3483-3543(3738)
66 PF14570 zf-RING_4: RING/Ubox 96.7 0.0013 2.8E-08 40.4 2.5 45 114-159 1-47 (48)
67 KOG2660 Locus-specific chromos 96.7 0.00032 6.9E-09 59.3 -0.5 48 111-161 15-62 (331)
68 KOG1002 Nucleotide excision re 96.7 0.00065 1.4E-08 60.8 1.4 53 107-163 532-589 (791)
69 PHA03096 p28-like protein; Pro 96.6 0.001 2.2E-08 55.9 1.7 48 112-159 179-236 (284)
70 PF10367 Vps39_2: Vacuolar sor 96.4 0.0012 2.7E-08 46.9 1.1 33 109-143 76-108 (109)
71 PF04641 Rtf2: Rtf2 RING-finge 96.1 0.0078 1.7E-07 50.1 4.4 53 108-161 110-162 (260)
72 KOG0826 Predicted E3 ubiquitin 96.1 0.022 4.7E-07 48.4 6.9 48 109-159 298-345 (357)
73 KOG1952 Transcription factor N 96.1 0.0027 5.9E-08 59.7 1.7 52 108-159 188-246 (950)
74 KOG0827 Predicted E3 ubiquitin 96.1 0.00035 7.7E-09 60.2 -4.0 49 111-160 196-245 (465)
75 COG5152 Uncharacterized conser 96.0 0.0038 8.3E-08 49.4 1.8 44 111-158 196-239 (259)
76 KOG2879 Predicted E3 ubiquitin 95.9 0.055 1.2E-06 45.0 8.4 51 107-160 235-287 (298)
77 KOG4739 Uncharacterized protei 95.9 0.0025 5.5E-08 51.8 0.6 44 113-160 5-48 (233)
78 PF14446 Prok-RING_1: Prokaryo 95.9 0.011 2.4E-07 37.1 3.4 41 110-154 4-44 (54)
79 KOG1813 Predicted E3 ubiquitin 95.7 0.0036 7.8E-08 52.3 0.7 44 112-159 242-285 (313)
80 KOG4275 Predicted E3 ubiquitin 95.5 0.0029 6.2E-08 52.9 -0.6 42 111-160 300-342 (350)
81 KOG4692 Predicted E3 ubiquitin 95.5 0.011 2.5E-07 50.6 2.8 50 108-161 419-468 (489)
82 COG5222 Uncharacterized conser 95.2 0.023 4.9E-07 47.8 3.7 45 112-159 275-321 (427)
83 KOG3268 Predicted E3 ubiquitin 95.2 0.015 3.4E-07 45.3 2.6 31 132-162 189-230 (234)
84 PF08746 zf-RING-like: RING-li 95.2 0.011 2.3E-07 35.5 1.3 41 114-155 1-43 (43)
85 PF14447 Prok-RING_4: Prokaryo 95.0 0.013 2.9E-07 36.8 1.4 44 112-161 8-51 (55)
86 KOG2114 Vacuolar assembly/sort 95.0 0.0095 2.1E-07 56.2 1.0 41 111-157 840-880 (933)
87 COG5236 Uncharacterized conser 94.5 0.028 6.1E-07 48.2 2.7 64 92-159 41-107 (493)
88 COG5175 MOT2 Transcriptional r 94.3 0.03 6.5E-07 47.9 2.4 53 110-163 13-67 (480)
89 KOG1940 Zn-finger protein [Gen 94.2 0.022 4.7E-07 47.7 1.3 47 113-161 160-207 (276)
90 KOG4185 Predicted E3 ubiquitin 94.2 0.033 7.2E-07 46.9 2.4 47 112-159 4-54 (296)
91 KOG2932 E3 ubiquitin ligase in 93.7 0.024 5.3E-07 47.8 0.7 43 112-159 91-133 (389)
92 KOG0298 DEAD box-containing he 93.4 0.025 5.4E-07 55.7 0.3 47 112-161 1154-1200(1394)
93 KOG1001 Helicase-like transcri 93.3 0.034 7.3E-07 52.2 1.0 47 112-163 455-503 (674)
94 KOG2034 Vacuolar sorting prote 93.1 0.042 9.2E-07 52.2 1.4 37 108-146 814-850 (911)
95 KOG1609 Protein involved in mR 93.1 0.054 1.2E-06 45.7 1.9 50 111-161 78-135 (323)
96 KOG0309 Conserved WD40 repeat- 93.0 0.055 1.2E-06 50.7 1.9 26 128-154 1044-1069(1081)
97 COG5183 SSM4 Protein involved 93.0 0.076 1.6E-06 50.2 2.8 54 107-162 8-68 (1175)
98 PF03854 zf-P11: P-11 zinc fin 92.7 0.061 1.3E-06 32.8 1.2 29 133-161 18-47 (50)
99 PF07800 DUF1644: Protein of u 92.7 0.15 3.3E-06 39.1 3.6 35 111-146 2-46 (162)
100 KOG3053 Uncharacterized conser 92.6 0.055 1.2E-06 44.5 1.2 53 108-161 17-83 (293)
101 KOG3161 Predicted E3 ubiquitin 92.4 0.038 8.3E-07 50.9 0.0 42 113-157 13-54 (861)
102 PF10272 Tmpp129: Putative tra 92.3 0.1 2.2E-06 45.4 2.4 28 133-160 311-351 (358)
103 PF12273 RCR: Chitin synthesis 91.5 0.18 3.9E-06 37.4 2.8 8 43-50 3-10 (130)
104 KOG1100 Predicted E3 ubiquitin 91.1 0.11 2.3E-06 41.9 1.3 38 114-159 161-199 (207)
105 KOG2817 Predicted E3 ubiquitin 91.0 0.89 1.9E-05 39.8 6.9 45 110-155 333-380 (394)
106 PF07975 C1_4: TFIIH C1-like d 89.7 0.31 6.8E-06 30.3 2.3 42 114-156 2-50 (51)
107 PF02439 Adeno_E3_CR2: Adenovi 89.0 1.1 2.4E-05 26.0 4.0 26 42-68 7-32 (38)
108 KOG3002 Zn finger protein [Gen 88.9 0.33 7.2E-06 41.2 2.6 46 110-161 47-92 (299)
109 KOG3800 Predicted E3 ubiquitin 88.3 0.47 1E-05 39.8 3.0 49 113-161 2-52 (300)
110 KOG0802 E3 ubiquitin ligase [P 88.0 0.27 5.8E-06 45.2 1.6 50 108-165 476-525 (543)
111 KOG4362 Transcriptional regula 87.7 0.14 3.1E-06 47.7 -0.4 46 111-160 21-69 (684)
112 PF01102 Glycophorin_A: Glycop 87.6 1.6 3.4E-05 32.2 5.1 18 39-56 65-82 (122)
113 KOG3899 Uncharacterized conser 87.0 0.34 7.3E-06 40.8 1.5 28 133-160 325-365 (381)
114 PF05290 Baculo_IE-1: Baculovi 86.9 0.45 9.6E-06 35.5 1.9 52 110-161 79-133 (140)
115 PF01102 Glycophorin_A: Glycop 86.6 1.1 2.4E-05 33.0 3.9 29 41-69 63-91 (122)
116 KOG1829 Uncharacterized conser 86.3 0.24 5.2E-06 45.6 0.3 42 110-155 510-556 (580)
117 KOG1812 Predicted E3 ubiquitin 86.1 0.29 6.2E-06 43.1 0.6 39 110-149 145-184 (384)
118 PF13901 DUF4206: Domain of un 85.5 0.62 1.3E-05 37.3 2.3 41 110-156 151-196 (202)
119 COG5220 TFB3 Cdk activating ki 85.5 0.37 8.1E-06 39.5 1.0 49 111-159 10-63 (314)
120 PF11023 DUF2614: Protein of u 83.8 6.9 0.00015 28.4 6.7 33 130-168 72-104 (114)
121 KOG0269 WD40 repeat-containing 82.9 1.2 2.6E-05 42.1 3.1 41 112-154 780-820 (839)
122 PF10571 UPF0547: Uncharacteri 82.1 0.83 1.8E-05 24.3 1.1 23 113-137 2-24 (26)
123 KOG3113 Uncharacterized conser 82.1 1.4 2.9E-05 36.5 2.9 49 112-162 112-160 (293)
124 PRK01844 hypothetical protein; 81.8 9.4 0.0002 25.4 6.2 30 39-68 3-32 (72)
125 PF15050 SCIMP: SCIMP protein 80.6 4.7 0.0001 29.6 4.9 18 40-57 7-24 (133)
126 PF14979 TMEM52: Transmembrane 79.0 4.3 9.3E-05 30.8 4.4 31 40-70 21-51 (154)
127 PF03229 Alpha_GJ: Alphavirus 78.8 10 0.00022 27.6 6.2 31 39-69 84-115 (126)
128 KOG0825 PHD Zn-finger protein 78.4 1.1 2.5E-05 42.5 1.5 50 110-159 95-153 (1134)
129 TIGR00622 ssl1 transcription f 78.3 3.4 7.3E-05 30.0 3.6 46 111-156 55-110 (112)
130 smart00249 PHD PHD zinc finger 78.1 1.5 3.2E-05 25.4 1.5 31 113-144 1-31 (47)
131 KOG2066 Vacuolar assembly/sort 78.1 0.84 1.8E-05 43.3 0.5 43 111-155 784-830 (846)
132 COG3763 Uncharacterized protei 77.5 18 0.00039 24.0 6.7 29 39-67 3-31 (71)
133 KOG4367 Predicted Zn-finger pr 76.8 1.2 2.6E-05 39.6 1.1 35 109-147 2-36 (699)
134 KOG3005 GIY-YIG type nuclease 76.1 1.5 3.3E-05 36.5 1.5 49 112-160 183-243 (276)
135 KOG1815 Predicted E3 ubiquitin 76.0 1.6 3.5E-05 39.1 1.7 37 109-148 68-104 (444)
136 PF13719 zinc_ribbon_5: zinc-r 75.8 1.9 4.2E-05 24.7 1.5 26 113-138 4-36 (37)
137 PF02009 Rifin_STEVOR: Rifin/s 75.5 4.6 0.0001 34.4 4.2 14 52-65 269-282 (299)
138 PRK00523 hypothetical protein; 75.4 18 0.00038 24.1 6.1 31 38-68 3-33 (72)
139 PF02891 zf-MIZ: MIZ/SP-RING z 74.0 4.4 9.5E-05 24.9 2.8 42 113-158 4-50 (50)
140 PF14569 zf-UDP: Zinc-binding 74.0 5.5 0.00012 26.9 3.5 57 110-166 8-68 (80)
141 KOG3842 Adaptor protein Pellin 73.3 4.6 0.0001 34.6 3.7 51 110-161 340-415 (429)
142 PF05568 ASFV_J13L: African sw 73.2 6 0.00013 30.0 3.9 32 35-68 25-56 (189)
143 PF00628 PHD: PHD-finger; Int 72.8 1.6 3.4E-05 26.5 0.6 42 114-156 2-49 (51)
144 PRK05978 hypothetical protein; 72.6 2.7 5.8E-05 32.1 2.0 31 135-170 43-73 (148)
145 TIGR01478 STEVOR variant surfa 72.1 5.9 0.00013 33.4 4.0 28 45-72 263-290 (295)
146 PF01363 FYVE: FYVE zinc finge 71.2 2.2 4.7E-05 27.6 1.1 37 110-146 8-44 (69)
147 KOG2807 RNA polymerase II tran 70.9 4.7 0.0001 34.6 3.2 46 110-157 329-375 (378)
148 PF15176 LRR19-TM: Leucine-ric 69.9 8.6 0.00019 27.3 3.8 25 44-68 20-44 (102)
149 PF15102 TMEM154: TMEM154 prot 68.5 1.7 3.6E-05 33.0 0.1 8 141-148 129-136 (146)
150 COG5109 Uncharacterized conser 68.1 4.1 9E-05 34.8 2.3 43 112-155 337-382 (396)
151 PF07204 Orthoreo_P10: Orthore 67.9 5.5 0.00012 27.9 2.5 30 39-68 39-68 (98)
152 PF10717 ODV-E18: Occlusion-de 67.6 18 0.00039 24.7 4.9 17 29-45 16-32 (85)
153 PTZ00370 STEVOR; Provisional 67.0 6.4 0.00014 33.2 3.2 24 46-69 260-283 (296)
154 KOG1812 Predicted E3 ubiquitin 66.8 3.4 7.3E-05 36.4 1.6 44 111-155 306-351 (384)
155 PLN02189 cellulose synthase 65.8 9.6 0.00021 37.7 4.5 51 110-160 33-87 (1040)
156 KOG4718 Non-SMC (structural ma 65.5 3.5 7.6E-05 33.3 1.3 43 111-156 181-223 (235)
157 PF05393 Hum_adeno_E3A: Human 64.9 6.8 0.00015 27.1 2.4 6 62-67 52-57 (94)
158 PF06844 DUF1244: Protein of u 64.5 4.2 9E-05 26.6 1.3 11 137-147 12-22 (68)
159 PF06024 DUF912: Nucleopolyhed 64.4 4.6 0.0001 28.6 1.7 13 3-15 13-25 (101)
160 PF13717 zinc_ribbon_4: zinc-r 62.9 4.4 9.5E-05 23.1 1.1 26 113-138 4-36 (36)
161 PF04710 Pellino: Pellino; In 62.8 2.4 5.3E-05 37.2 0.0 27 128-158 305-337 (416)
162 cd00065 FYVE FYVE domain; Zinc 62.3 6.7 0.00014 24.2 2.0 36 112-147 3-38 (57)
163 PF07649 C1_3: C1-like domain; 61.6 7.9 0.00017 20.8 1.9 29 113-142 2-30 (30)
164 PF15330 SIT: SHP2-interacting 60.7 13 0.00029 26.6 3.5 17 44-60 3-19 (107)
165 PF06024 DUF912: Nucleopolyhed 59.5 11 0.00023 26.7 2.8 9 41-49 64-72 (101)
166 PF12877 DUF3827: Domain of un 59.2 5.9 0.00013 37.0 1.8 27 38-64 266-292 (684)
167 PLN02436 cellulose synthase A 57.9 15 0.00033 36.5 4.4 51 110-160 35-89 (1094)
168 PF04710 Pellino: Pellino; In 57.7 3.4 7.3E-05 36.4 0.0 49 111-160 328-401 (416)
169 TIGR01477 RIFIN variant surfac 57.1 15 0.00033 31.9 3.8 9 56-64 327-335 (353)
170 KOG2041 WD40 repeat protein [G 56.4 31 0.00066 33.2 5.9 46 111-160 1131-1185(1189)
171 smart00064 FYVE Protein presen 56.0 11 0.00023 24.2 2.2 36 111-146 10-45 (68)
172 PF14311 DUF4379: Domain of un 55.9 9.1 0.0002 23.7 1.8 23 132-155 33-55 (55)
173 PF10577 UPF0560: Uncharacteri 55.7 26 0.00055 33.8 5.3 7 20-26 254-260 (807)
174 smart00132 LIM Zinc-binding do 55.6 13 0.00029 20.3 2.4 36 114-159 2-37 (39)
175 PHA03240 envelope glycoprotein 55.6 17 0.00036 29.5 3.6 20 39-58 212-231 (258)
176 KOG1729 FYVE finger containing 55.2 2.2 4.7E-05 36.2 -1.6 38 112-150 215-252 (288)
177 PRK14762 membrane protein; Pro 54.6 31 0.00066 18.1 3.6 19 40-58 4-22 (27)
178 PTZ00046 rifin; Provisional 54.1 17 0.00037 31.7 3.7 9 56-64 332-340 (358)
179 PHA02657 hypothetical protein; 54.1 32 0.00068 23.7 4.2 36 29-64 16-51 (95)
180 KOG2068 MOT2 transcription fac 53.5 30 0.00065 29.8 5.0 49 112-161 250-299 (327)
181 PF06906 DUF1272: Protein of u 53.4 26 0.00057 22.1 3.5 45 113-162 7-54 (57)
182 PLN02195 cellulose synthase A 52.9 22 0.00047 35.1 4.5 52 110-161 5-60 (977)
183 PF07438 DUF1514: Protein of u 52.8 13 0.00028 24.2 2.0 16 41-56 1-16 (66)
184 PF11770 GAPT: GRB2-binding ad 52.1 16 0.00034 27.9 2.8 18 42-59 11-28 (158)
185 KOG1538 Uncharacterized conser 52.0 6.4 0.00014 37.2 0.8 37 124-160 1041-1077(1081)
186 PF10497 zf-4CXXC_R1: Zinc-fin 51.3 22 0.00047 25.4 3.3 47 110-157 6-69 (105)
187 PF08374 Protocadherin: Protoc 50.9 14 0.00031 29.8 2.6 31 35-65 34-64 (221)
188 PF00412 LIM: LIM domain; Int 50.8 14 0.0003 22.6 2.0 39 114-162 1-39 (58)
189 cd00350 rubredoxin_like Rubred 50.2 9 0.00019 21.2 1.0 19 133-157 7-25 (33)
190 PRK02935 hypothetical protein; 50.0 94 0.002 22.3 7.3 23 146-168 83-105 (110)
191 PLN02638 cellulose synthase A 49.9 23 0.0005 35.3 4.2 51 110-160 16-70 (1079)
192 PF15176 LRR19-TM: Leucine-ric 49.7 83 0.0018 22.4 5.9 34 34-67 14-47 (102)
193 PF02009 Rifin_STEVOR: Rifin/s 47.9 31 0.00066 29.4 4.2 29 41-70 255-283 (299)
194 KOG3039 Uncharacterized conser 47.5 11 0.00023 31.3 1.4 33 111-147 43-75 (303)
195 PF11770 GAPT: GRB2-binding ad 47.1 6.4 0.00014 30.0 0.0 30 45-74 10-39 (158)
196 PHA02849 putative transmembran 46.8 57 0.0012 22.0 4.5 20 32-51 7-26 (82)
197 KOG2979 Protein involved in DN 46.6 12 0.00026 31.0 1.6 44 111-157 176-221 (262)
198 PF06170 DUF983: Protein of un 46.6 7.5 0.00016 26.8 0.3 28 143-170 2-29 (86)
199 PF02318 FYVE_2: FYVE-type zin 46.5 12 0.00026 27.2 1.3 48 109-157 52-102 (118)
200 PF06365 CD34_antigen: CD34/Po 46.2 18 0.0004 29.0 2.5 18 52-69 112-129 (202)
201 PF11446 DUF2897: Protein of u 46.0 50 0.0011 20.7 4.0 13 40-52 4-16 (55)
202 smart00647 IBR In Between Ring 45.8 6.5 0.00014 24.6 -0.1 21 125-145 38-58 (64)
203 PF04689 S1FA: DNA binding pro 45.8 17 0.00037 23.6 1.8 33 35-67 8-40 (69)
204 PF04971 Lysis_S: Lysis protei 45.7 27 0.00059 22.9 2.8 30 38-67 29-58 (68)
205 PF04423 Rad50_zn_hook: Rad50 45.4 6.6 0.00014 24.3 -0.1 11 151-161 22-32 (54)
206 PHA02650 hypothetical protein; 45.3 61 0.0013 21.9 4.5 6 53-58 61-66 (81)
207 PF15050 SCIMP: SCIMP protein 45.3 31 0.00067 25.4 3.3 22 36-57 7-28 (133)
208 PF15065 NCU-G1: Lysosomal tra 45.3 16 0.00034 31.9 2.1 36 35-70 313-348 (350)
209 PF07191 zinc-ribbons_6: zinc- 45.1 2.1 4.5E-05 28.4 -2.5 39 112-159 2-40 (70)
210 PF05510 Sarcoglycan_2: Sarcog 44.9 39 0.00085 29.9 4.5 32 36-67 280-311 (386)
211 PF02060 ISK_Channel: Slow vol 44.3 82 0.0018 23.4 5.4 12 29-40 34-45 (129)
212 KOG0824 Predicted E3 ubiquitin 43.1 8.2 0.00018 32.8 0.1 49 108-159 102-150 (324)
213 PF07282 OrfB_Zn_ribbon: Putat 42.6 29 0.00063 22.2 2.7 35 110-144 27-63 (69)
214 smart00531 TFIIE Transcription 42.4 24 0.00051 26.6 2.5 16 150-165 124-139 (147)
215 PLN02400 cellulose synthase 42.3 27 0.00058 34.9 3.4 51 110-160 35-89 (1085)
216 PF06750 DiS_P_DiS: Bacterial 42.2 30 0.00066 24.0 2.8 38 111-161 33-70 (92)
217 PF06143 Baculo_11_kDa: Baculo 41.6 15 0.00033 25.2 1.2 43 19-61 14-56 (84)
218 PF01299 Lamp: Lysosome-associ 41.5 27 0.00058 29.6 3.0 6 13-18 243-248 (306)
219 PF13832 zf-HC5HC2H_2: PHD-zin 41.4 25 0.00054 24.8 2.4 32 110-144 54-87 (110)
220 PF14169 YdjO: Cold-inducible 40.9 15 0.00032 23.5 1.0 14 149-162 39-52 (59)
221 PF07010 Endomucin: Endomucin; 40.7 1E+02 0.0022 25.4 5.8 14 53-66 203-216 (259)
222 COG5627 MMS21 DNA repair prote 40.6 13 0.00029 30.5 0.9 41 111-154 189-231 (275)
223 KOG3637 Vitronectin receptor, 40.4 17 0.00036 36.3 1.7 29 38-66 976-1004(1030)
224 PRK13454 F0F1 ATP synthase sub 40.2 60 0.0013 25.3 4.6 18 24-41 14-31 (181)
225 PF15183 MRAP: Melanocortin-2 40.1 45 0.00099 22.9 3.3 14 41-54 42-55 (90)
226 PF04834 Adeno_E3_14_5: Early 39.6 65 0.0014 22.7 4.1 35 29-63 12-46 (97)
227 PF06305 DUF1049: Protein of u 39.2 57 0.0012 20.7 3.7 20 34-53 15-34 (68)
228 COG3357 Predicted transcriptio 39.1 15 0.00032 25.7 0.8 28 132-163 63-90 (97)
229 PF15179 Myc_target_1: Myc tar 38.8 94 0.002 24.6 5.3 17 29-45 10-26 (197)
230 COG3492 Uncharacterized protei 38.7 15 0.00033 25.6 0.8 13 136-148 42-54 (104)
231 PF15298 AJAP1_PANP_C: AJAP1/P 38.4 16 0.00034 29.2 1.0 32 36-67 95-127 (205)
232 KOG1512 PHD Zn-finger protein 38.1 14 0.00031 31.2 0.8 32 111-143 314-345 (381)
233 PF09723 Zn-ribbon_8: Zinc rib 37.9 6.8 0.00015 23.0 -0.9 25 132-157 10-34 (42)
234 TIGR01477 RIFIN variant surfac 37.8 59 0.0013 28.4 4.4 17 55-71 322-338 (353)
235 PTZ00046 rifin; Provisional 37.6 61 0.0013 28.4 4.5 17 55-71 327-343 (358)
236 KOG0860 Synaptobrevin/VAMP-lik 37.4 52 0.0011 24.0 3.5 14 41-54 94-107 (116)
237 PLN02915 cellulose synthase A 37.2 57 0.0012 32.6 4.7 51 110-160 14-68 (1044)
238 PF04639 Baculo_E56: Baculovir 36.6 20 0.00044 30.3 1.4 7 40-46 277-283 (305)
239 PF14991 MLANA: Protein melan- 36.5 5.7 0.00012 28.8 -1.6 11 56-66 36-46 (118)
240 KOG2071 mRNA cleavage and poly 36.4 18 0.00039 33.5 1.2 36 109-146 511-557 (579)
241 PF05398 PufQ: PufQ cytochrome 36.3 1.2E+02 0.0027 20.2 4.8 23 31-53 15-37 (73)
242 PLN02248 cellulose synthase-li 36.1 47 0.001 33.4 4.0 32 133-164 150-181 (1135)
243 KOG1815 Predicted E3 ubiquitin 36.0 11 0.00024 33.8 -0.2 37 112-149 227-268 (444)
244 PRK11827 hypothetical protein; 35.7 15 0.00032 23.6 0.4 19 143-161 2-20 (60)
245 PF05715 zf-piccolo: Piccolo Z 34.6 28 0.00061 22.3 1.5 11 149-159 2-12 (61)
246 PF04478 Mid2: Mid2 like cell 34.2 4.8 0.00011 30.8 -2.4 8 60-67 69-76 (154)
247 PF03119 DNA_ligase_ZBD: NAD-d 34.2 15 0.00034 19.6 0.2 14 151-164 1-14 (28)
248 KOG4482 Sarcoglycan complex, a 33.3 63 0.0014 28.6 3.9 34 35-68 291-324 (449)
249 KOG4323 Polycomb-like PHD Zn-f 33.2 33 0.00072 31.0 2.3 49 111-159 168-225 (464)
250 TIGR02976 phageshock_pspB phag 33.0 1E+02 0.0023 20.6 4.2 8 58-65 20-27 (75)
251 PF09943 DUF2175: Uncharacteri 33.0 36 0.00077 24.2 2.0 32 113-146 4-35 (101)
252 COG3813 Uncharacterized protei 32.7 52 0.0011 22.0 2.6 30 134-165 28-57 (84)
253 PF10661 EssA: WXG100 protein 32.7 88 0.0019 23.7 4.2 11 52-62 130-140 (145)
254 KOG1245 Chromatin remodeling c 32.4 15 0.00033 37.7 0.1 51 108-159 1105-1159(1404)
255 PF03107 C1_2: C1 domain; Int 32.3 37 0.00079 18.2 1.6 28 113-141 2-29 (30)
256 PRK06266 transcription initiat 31.5 70 0.0015 25.0 3.6 20 146-165 133-152 (178)
257 PF07406 NICE-3: NICE-3 protei 31.3 81 0.0017 25.0 4.0 18 137-154 124-143 (186)
258 PF05605 zf-Di19: Drought indu 31.1 21 0.00045 21.9 0.5 38 112-158 3-40 (54)
259 PF15345 TMEM51: Transmembrane 30.9 45 0.00097 27.3 2.5 12 1-12 23-34 (233)
260 PRK09174 F0F1 ATP synthase sub 30.6 1.1E+02 0.0025 24.4 4.8 10 32-41 44-53 (204)
261 PF11057 Cortexin: Cortexin of 30.4 1E+02 0.0022 20.7 3.7 7 60-66 44-50 (81)
262 PF15353 HECA: Headcase protei 30.3 30 0.00066 24.8 1.3 14 133-146 40-53 (107)
263 PF06677 Auto_anti-p27: Sjogre 29.6 36 0.00077 20.0 1.3 20 143-162 11-30 (41)
264 KOG2231 Predicted E3 ubiquitin 29.6 39 0.00085 32.0 2.2 45 113-161 2-53 (669)
265 TIGR00686 phnA alkylphosphonat 29.5 33 0.00071 24.7 1.3 26 112-137 3-29 (109)
266 smart00734 ZnF_Rad18 Rad18-lik 29.5 25 0.00055 18.4 0.6 9 151-159 3-11 (26)
267 PF15145 DUF4577: Domain of un 29.3 1.2E+02 0.0025 22.1 4.1 17 79-95 94-110 (128)
268 PF13771 zf-HC5HC2H: PHD-like 29.1 38 0.00081 22.8 1.6 33 111-144 36-68 (90)
269 PRK11088 rrmA 23S rRNA methylt 29.0 39 0.00084 27.9 1.9 25 112-137 3-27 (272)
270 PRK11901 hypothetical protein; 28.8 1.1E+02 0.0024 26.4 4.6 15 48-62 44-58 (327)
271 COG4357 Zinc finger domain con 28.5 53 0.0012 23.2 2.2 30 133-163 65-94 (105)
272 COG3088 CcmH Uncharacterized p 28.4 2.5E+02 0.0053 21.5 5.9 27 42-68 104-130 (153)
273 PF14316 DUF4381: Domain of un 28.3 82 0.0018 23.5 3.5 7 41-47 23-29 (146)
274 PF10083 DUF2321: Uncharacteri 28.0 46 0.001 25.6 2.0 45 115-162 8-52 (158)
275 PF07213 DAP10: DAP10 membrane 28.0 2E+02 0.0043 19.5 5.2 29 40-68 32-60 (79)
276 PF04216 FdhE: Protein involve 27.9 8.5 0.00018 32.4 -2.2 48 109-157 170-219 (290)
277 PF15106 TMEM156: TMEM156 prot 27.8 93 0.002 25.2 3.7 18 41-58 177-194 (226)
278 PF02038 ATP1G1_PLM_MAT8: ATP1 27.8 69 0.0015 19.7 2.4 25 37-61 9-33 (50)
279 PF13980 UPF0370: Uncharacteri 27.7 85 0.0018 20.0 2.8 14 40-53 7-20 (63)
280 PRK00418 DNA gyrase inhibitor; 27.7 40 0.00087 21.8 1.4 34 150-183 7-53 (62)
281 TIGR00373 conserved hypothetic 27.7 75 0.0016 24.2 3.2 20 146-165 125-144 (158)
282 PHA02935 Hypothetical protein; 27.3 2E+02 0.0042 23.4 5.5 26 29-54 302-327 (349)
283 PF08374 Protocadherin: Protoc 26.8 21 0.00045 29.0 -0.1 33 36-68 32-64 (221)
284 PF09753 Use1: Membrane fusion 26.5 76 0.0016 26.0 3.2 10 39-48 228-237 (251)
285 PF05399 EVI2A: Ectropic viral 26.4 93 0.002 25.2 3.5 6 19-24 99-104 (227)
286 COG1545 Predicted nucleic-acid 26.3 45 0.00097 25.0 1.7 23 129-159 31-53 (140)
287 KOG4185 Predicted E3 ubiquitin 26.2 11 0.00023 31.6 -1.9 49 111-159 207-266 (296)
288 COG4847 Uncharacterized protei 26.1 72 0.0016 22.5 2.5 34 111-146 6-39 (103)
289 PRK03564 formate dehydrogenase 26.1 31 0.00066 29.6 0.8 42 110-157 186-234 (309)
290 PF03672 UPF0154: Uncharacteri 26.1 1.9E+02 0.0042 18.8 4.6 15 53-67 10-24 (64)
291 TIGR01195 oadG_fam sodium pump 26.0 1.7E+02 0.0037 19.8 4.4 18 50-67 17-34 (82)
292 KOG0803 Predicted E3 ubiquitin 25.6 6.7 0.00015 39.8 -3.6 49 110-160 1060-1115(1312)
293 KOG3579 Predicted E3 ubiquitin 25.5 44 0.00095 28.4 1.6 38 111-149 268-306 (352)
294 PF05502 Dynactin_p62: Dynacti 25.4 50 0.0011 30.1 2.1 16 110-125 25-40 (483)
295 COG1592 Rubrerythrin [Energy p 25.3 52 0.0011 25.6 1.9 24 127-157 134-157 (166)
296 PF00130 C1_1: Phorbol esters/ 25.1 61 0.0013 19.4 1.9 33 111-144 11-45 (53)
297 PF12072 DUF3552: Domain of un 24.8 1.1E+02 0.0023 24.3 3.7 18 43-60 3-20 (201)
298 PF05191 ADK_lid: Adenylate ki 24.6 31 0.00067 19.6 0.4 30 129-160 3-32 (36)
299 PF08274 PhnA_Zn_Ribbon: PhnA 24.3 36 0.00079 18.6 0.6 24 113-136 4-28 (30)
300 PRK01343 zinc-binding protein; 24.0 52 0.0011 20.9 1.4 35 149-183 9-52 (57)
301 PRK10220 hypothetical protein; 23.9 60 0.0013 23.4 1.8 25 112-136 4-29 (111)
302 COG4068 Uncharacterized protei 23.9 49 0.0011 21.2 1.2 17 149-165 8-24 (64)
303 PF09237 GAGA: GAGA factor; I 23.8 22 0.00047 22.2 -0.4 10 151-160 26-35 (54)
304 KOG1356 Putative transcription 23.6 30 0.00065 33.5 0.3 45 111-157 229-279 (889)
305 PRK14475 F0F1 ATP synthase sub 23.5 2.1E+02 0.0045 21.8 5.0 9 38-46 9-17 (167)
306 KOG3653 Transforming growth fa 23.5 2.3E+02 0.0049 26.1 5.7 14 137-150 289-303 (534)
307 COG0675 Transposase and inacti 22.7 75 0.0016 26.3 2.6 30 108-140 306-335 (364)
308 PF01708 Gemini_mov: Geminivir 22.3 1.3E+02 0.0028 21.0 3.1 32 32-63 29-60 (91)
309 KOG4430 Topoisomerase I-bindin 22.3 28 0.00061 32.1 -0.1 53 108-160 257-309 (553)
310 TIGR01478 STEVOR variant surfa 22.3 1E+02 0.0022 26.1 3.2 16 55-70 270-285 (295)
311 PTZ00370 STEVOR; Provisional 21.7 1.1E+02 0.0023 26.0 3.2 19 53-71 264-282 (296)
312 KOG4021 Mitochondrial ribosoma 21.6 44 0.00096 26.7 0.9 22 138-159 96-118 (239)
313 PF14584 DUF4446: Protein of u 21.6 1.5E+02 0.0033 22.5 3.8 35 95-130 81-115 (151)
314 KOG2169 Zn-finger transcriptio 21.3 54 0.0012 31.0 1.6 45 112-164 307-360 (636)
315 PF01528 Herpes_glycop: Herpes 20.9 2E+02 0.0043 25.4 4.8 32 36-67 300-331 (374)
316 PF08496 Peptidase_S49_N: Pept 20.9 1.9E+02 0.0042 22.1 4.3 23 36-58 2-24 (155)
317 PF05279 Asp-B-Hydro_N: Aspart 20.8 1.1E+02 0.0023 25.4 3.0 23 31-53 6-28 (243)
318 PF03884 DUF329: Domain of unk 20.7 39 0.00085 21.4 0.3 33 150-182 3-48 (57)
319 PF03554 Herpes_UL73: UL73 vir 20.3 2.5E+02 0.0055 19.1 4.3 15 53-67 61-75 (82)
320 PF09538 FYDLN_acid: Protein o 20.1 61 0.0013 23.3 1.3 13 150-162 27-39 (108)
321 PRK09173 F0F1 ATP synthase sub 20.0 1.4E+02 0.0029 22.5 3.3 15 37-51 1-15 (159)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.2e-22 Score=171.82 Aligned_cols=83 Identities=37% Similarity=0.842 Sum_probs=70.1
Q ss_pred HhcCCCHHHHhcCCcccccCCCCCCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCC-CcccccCCcCCC
Q 029206 85 AARGLKKSALRQIPVAVYGAAGVKIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSS-CPTCRRSLLDQP 163 (197)
Q Consensus 85 ~~~~~~~~~~~~lp~~~~~~~~~~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~-CP~CR~~v~~~~ 163 (197)
+..++.+..++++|...|...........|+||||+|+.+|++|.|| |+|.||..|||+||.++++ ||+||+++....
T Consensus 203 ~~~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 203 RRNRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS 281 (348)
T ss_pred hhhhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence 44557889999999999998765554478999999999999999999 9999999999999988755 999999887655
Q ss_pred CCCcc
Q 029206 164 TSSDA 168 (197)
Q Consensus 164 ~~~~~ 168 (197)
+....
T Consensus 282 ~~~~~ 286 (348)
T KOG4628|consen 282 GSEPV 286 (348)
T ss_pred CCCCc
Confidence 54333
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.66 E-value=3.3e-17 Score=99.96 Aligned_cols=44 Identities=57% Similarity=1.261 Sum_probs=40.4
Q ss_pred CcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccc
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCR 156 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR 156 (197)
++|+||+++|..++.+..++ |+|+||.+||..|++++.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 36999999999999999998 999999999999999999999997
No 3
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=5.9e-14 Score=118.55 Aligned_cols=52 Identities=33% Similarity=0.917 Sum_probs=43.5
Q ss_pred CCCCCcccccccc-cccC---------CceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCc
Q 029206 108 KIKATDCAICLVD-FMDG---------EKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 108 ~~~~~~C~ICl~~-~~~~---------~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
..++..|.||+++ |+.+ ..-..|| |||+||-+|+..|+.++++||+||.++.
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCccc
Confidence 4557789999999 4433 2346788 9999999999999999999999999954
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.48 E-value=4.3e-14 Score=115.05 Aligned_cols=75 Identities=32% Similarity=0.690 Sum_probs=58.0
Q ss_pred hcCCCHHHHhcCCcccccCCC--CCCCCCcccccccccccCC----ceEEcCCCCCcccHhHHHHHHhCCCCCcccccCC
Q 029206 86 ARGLKKSALRQIPVAVYGAAG--VKIKATDCAICLVDFMDGE----KVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSL 159 (197)
Q Consensus 86 ~~~~~~~~~~~lp~~~~~~~~--~~~~~~~C~ICl~~~~~~~----~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v 159 (197)
..+..+..+..+|........ ....+.+|+||++++.++. .+.+++.|+|.||.+||..|+..+.+||+||..+
T Consensus 147 k~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 147 KGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred hcchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 345678888999988765432 2344678999999987643 2335555999999999999999999999999977
Q ss_pred c
Q 029206 160 L 160 (197)
Q Consensus 160 ~ 160 (197)
.
T Consensus 227 ~ 227 (238)
T PHA02929 227 I 227 (238)
T ss_pred e
Confidence 4
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.45 E-value=6.2e-14 Score=94.60 Aligned_cols=45 Identities=40% Similarity=0.928 Sum_probs=35.7
Q ss_pred CCcccccccccccC----------CceEEcCCCCCcccHhHHHHHHhCCCCCcccc
Q 029206 111 ATDCAICLVDFMDG----------EKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCR 156 (197)
Q Consensus 111 ~~~C~ICl~~~~~~----------~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR 156 (197)
++.|+||+++|.+. -.+...+ |+|.||..||.+||+.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 45599999999322 2344455 999999999999999999999998
No 6
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1e-13 Score=114.34 Aligned_cols=52 Identities=44% Similarity=1.170 Sum_probs=47.0
Q ss_pred CCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHh-CCCCCcccccCCcC
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLM-SHSSCPTCRRSLLD 161 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~v~~ 161 (197)
..+.+|+|||+.|-..|.+++|| |+|.||..|+++|+. -+..||+||..+++
T Consensus 321 ~~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 34578999999999999999999 999999999999998 56679999999865
No 7
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.17 E-value=2.8e-11 Score=72.79 Aligned_cols=44 Identities=50% Similarity=1.180 Sum_probs=36.7
Q ss_pred cccccccccccCCceEEcCCCCCcccHhHHHHHHhC-CCCCcccccCC
Q 029206 113 DCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS-HSSCPTCRRSL 159 (197)
Q Consensus 113 ~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~v 159 (197)
+|+||++.+ .+.+...+ |+|.||..|++.|+.. +..||+||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 34455565 9999999999999987 77899999764
No 8
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=3.6e-11 Score=98.91 Aligned_cols=51 Identities=27% Similarity=0.694 Sum_probs=42.9
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQ 162 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~ 162 (197)
......|.+||+..+++ ..+| |||+||..||..|...+..||+||....+.
T Consensus 236 ~~a~~kC~LCLe~~~~p---SaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNP---SATP-CGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCCCceEEEecCCCCC---CcCc-CcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 34457899999887665 3677 999999999999999999999999987554
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.14 E-value=3.1e-11 Score=75.38 Aligned_cols=46 Identities=33% Similarity=0.809 Sum_probs=38.2
Q ss_pred CCcccccccccccCCceEEcCCCCCc-ccHhHHHHHHhCCCCCcccccCCc
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHG-FHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
+..|.||++... .+..+| |||. |+..|+..|++.+..||+||+++.
T Consensus 2 ~~~C~iC~~~~~---~~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPR---DVVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBS---SEEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCC---ceEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 467999998753 466777 9999 999999999999999999999874
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.12 E-value=4.4e-11 Score=70.86 Aligned_cols=39 Identities=44% Similarity=1.077 Sum_probs=32.5
Q ss_pred ccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCccc
Q 029206 114 CAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTC 155 (197)
Q Consensus 114 C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~C 155 (197)
|+||++.+.+ .+..++ |||.|+.+|+.+|++.+.+||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999998865 445676 99999999999999998999998
No 11
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.12 E-value=9.6e-11 Score=92.10 Aligned_cols=49 Identities=33% Similarity=0.718 Sum_probs=39.2
Q ss_pred CCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhC----------------CCCCcccccCCcC
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS----------------HSSCPTCRRSLLD 161 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~----------------~~~CP~CR~~v~~ 161 (197)
.++.+|+||++.+++. .+++ |||.||..||..|+.. +..||+||..+..
T Consensus 16 ~~~~~CpICld~~~dP---VvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 16 GGDFDCNICLDQVRDP---VVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCccCCccCCCcCCCc---EEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 3467899999998654 4566 9999999999999852 2469999998854
No 12
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=4.6e-11 Score=108.67 Aligned_cols=54 Identities=37% Similarity=0.904 Sum_probs=45.8
Q ss_pred CCCCcccccccccccCCc--eEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCCC
Q 029206 109 IKATDCAICLVDFMDGEK--VRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQP 163 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~--i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~~ 163 (197)
..+..|+||++++..... ...++ |+|+||..|+..|++++++||+||..+....
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~ 344 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYDYV 344 (543)
T ss_pred hcCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhccc
Confidence 346789999999987654 67888 9999999999999999999999999554443
No 13
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.08 E-value=7.7e-11 Score=80.76 Aligned_cols=51 Identities=37% Similarity=0.855 Sum_probs=38.4
Q ss_pred CCcccccccccc--------cCCc-eEEcCCCCCcccHhHHHHHHhC---CCCCcccccCCcC
Q 029206 111 ATDCAICLVDFM--------DGEK-VRVLPKCNHGFHVRCIDTWLMS---HSSCPTCRRSLLD 161 (197)
Q Consensus 111 ~~~C~ICl~~~~--------~~~~-i~~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~v~~ 161 (197)
++.|.||...|+ .++. -.+...|+|.||..||.+|+.. +..||+||+....
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 677999999986 1221 1233359999999999999975 4679999997643
No 14
>PHA02926 zinc finger-like protein; Provisional
Probab=99.04 E-value=9.4e-11 Score=93.39 Aligned_cols=53 Identities=30% Similarity=0.741 Sum_probs=40.1
Q ss_pred CCCCCcccccccccccC-----CceEEcCCCCCcccHhHHHHHHhCC------CCCcccccCCc
Q 029206 108 KIKATDCAICLVDFMDG-----EKVRVLPKCNHGFHVRCIDTWLMSH------SSCPTCRRSLL 160 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~-----~~i~~lp~C~H~FH~~Ci~~Wl~~~------~~CP~CR~~v~ 160 (197)
...+.+|+|||+..-++ .....|+.|+|.||..||+.|...+ .+||+||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 44567899999886332 2334666799999999999999753 45999998763
No 15
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=99.02 E-value=2.6e-10 Score=69.34 Aligned_cols=44 Identities=27% Similarity=0.796 Sum_probs=38.0
Q ss_pred cccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCccccc
Q 029206 113 DCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRR 157 (197)
Q Consensus 113 ~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 157 (197)
+|+||++.|.+....++++ |||+|+..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999996666777787 9999999999998866778999985
No 16
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.7e-10 Score=88.77 Aligned_cols=53 Identities=34% Similarity=0.700 Sum_probs=43.0
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQ 162 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~ 162 (197)
..+-..|+|||+.+.+... ...+|||+||..||..-++....||+||+.|..+
T Consensus 128 ~~~~~~CPiCl~~~sek~~--vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVP--VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred cccccCCCceecchhhccc--cccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 3445679999999976543 4346999999999999999999999999877543
No 17
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.93 E-value=5.8e-10 Score=66.56 Aligned_cols=39 Identities=44% Similarity=1.080 Sum_probs=32.9
Q ss_pred ccccccccccCCceEEcCCCCCcccHhHHHHHHh--CCCCCccc
Q 029206 114 CAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLM--SHSSCPTC 155 (197)
Q Consensus 114 C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~--~~~~CP~C 155 (197)
|+||++.+.+.. ..++ |+|.|+..||.+|+. ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999986553 5676 999999999999998 45669998
No 18
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=7.1e-10 Score=88.84 Aligned_cols=51 Identities=31% Similarity=0.606 Sum_probs=39.1
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC---CCCcccccCCcCC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH---SSCPTCRRSLLDQ 162 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~v~~~ 162 (197)
.....+|.|||+.-+++ .++. |||.||..||.+||..+ +.||+||..|..+
T Consensus 44 ~~~~FdCNICLd~akdP---VvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP---VVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCCceeeeeeccccCCC---EEee-cccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 34557899999885443 3444 99999999999999764 4599999988543
No 19
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.90 E-value=6.7e-10 Score=74.43 Aligned_cols=52 Identities=37% Similarity=0.701 Sum_probs=38.9
Q ss_pred Ccccccccccc-----------cCCc--eEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCCCC
Q 029206 112 TDCAICLVDFM-----------DGEK--VRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQPT 164 (197)
Q Consensus 112 ~~C~ICl~~~~-----------~~~~--i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~~~ 164 (197)
+.|+||...|. .+++ +..= .|+|.||..||.+||..+..||++|+...-++.
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG-~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~~~ 85 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWG-VCNHAFHDHCIYRWLDTKGVCPLDRQTWVLADG 85 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEE-ecchHHHHHHHHHHHhhCCCCCCCCceeEEecc
Confidence 56777777663 2332 2233 399999999999999999999999998765443
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.87 E-value=1.8e-09 Score=62.57 Aligned_cols=38 Identities=45% Similarity=1.113 Sum_probs=32.1
Q ss_pred ccccccccccCCceEEcCCCCCcccHhHHHHHHh-CCCCCccc
Q 029206 114 CAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLM-SHSSCPTC 155 (197)
Q Consensus 114 C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~C 155 (197)
|+||++. ......++ |+|.||..|++.|+. .+..||+|
T Consensus 1 C~iC~~~---~~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE---LKDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC---CCCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899987 34566777 999999999999998 56679987
No 21
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.85 E-value=1.8e-09 Score=64.92 Aligned_cols=38 Identities=42% Similarity=0.934 Sum_probs=28.5
Q ss_pred ccccccccccCCceEEcCCCCCcccHhHHHHHHhCC----CCCccc
Q 029206 114 CAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH----SSCPTC 155 (197)
Q Consensus 114 C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~C 155 (197)
|+||++-|+++ ..|+ |||.|+..||..|++.. ..||.|
T Consensus 1 CpiC~~~~~~P---v~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999776 4566 99999999999999654 359987
No 22
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.82 E-value=4.9e-09 Score=68.18 Aligned_cols=46 Identities=30% Similarity=0.580 Sum_probs=39.8
Q ss_pred CcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
..|+||++.++++ ..++ |||+|++.||..|++.+.+||+|+..+..
T Consensus 2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 3599999999775 4566 99999999999999988999999988743
No 23
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=7.6e-10 Score=73.55 Aligned_cols=50 Identities=36% Similarity=0.827 Sum_probs=37.0
Q ss_pred CCccccccccccc--------CC-ceEEcCCCCCcccHhHHHHHHhCC---CCCcccccCCc
Q 029206 111 ATDCAICLVDFMD--------GE-KVRVLPKCNHGFHVRCIDTWLMSH---SSCPTCRRSLL 160 (197)
Q Consensus 111 ~~~C~ICl~~~~~--------~~-~i~~lp~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~v~ 160 (197)
+..|-||.-+|+. +| --.++..|.|.||..||.+|+..+ ..||+||+...
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 4579999988862 22 222344599999999999999654 45999998764
No 24
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=3.2e-09 Score=86.67 Aligned_cols=52 Identities=29% Similarity=0.653 Sum_probs=43.2
Q ss_pred CCCCCcccccccccccCC-------ceEEcCCCCCcccHhHHHHHH--hCCCCCcccccCCc
Q 029206 108 KIKATDCAICLVDFMDGE-------KVRVLPKCNHGFHVRCIDTWL--MSHSSCPTCRRSLL 160 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~-------~i~~lp~C~H~FH~~Ci~~Wl--~~~~~CP~CR~~v~ 160 (197)
..++..|+||-..+.... ++..|. |+|+||+.||+-|- .++++||.|+..+-
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 455778999998886554 678887 99999999999998 46789999988763
No 25
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.66 E-value=1.8e-08 Score=87.74 Aligned_cols=50 Identities=28% Similarity=0.524 Sum_probs=42.0
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
......|+||++.|... .+++ |+|.||..||..|+..+..||+||..+..
T Consensus 23 Le~~l~C~IC~d~~~~P---vitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVP---VLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccCCCcCchhhhCc---cCCC-CCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 34467899999998665 2566 99999999999999888889999998754
No 26
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.9e-08 Score=87.04 Aligned_cols=51 Identities=31% Similarity=0.768 Sum_probs=38.9
Q ss_pred CCCcccccccccccC--------------CceEEcCCCCCcccHhHHHHHHh-CCCCCcccccCCcC
Q 029206 110 KATDCAICLVDFMDG--------------EKVRVLPKCNHGFHVRCIDTWLM-SHSSCPTCRRSLLD 161 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~--------------~~i~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~v~~ 161 (197)
...+|+||+.+.+-. ..-..+| |+|+||..|+.+|+. .+..||+||.+++.
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 346799999987411 1123445 999999999999998 56689999998854
No 27
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.65 E-value=2.1e-08 Score=62.34 Aligned_cols=42 Identities=29% Similarity=0.767 Sum_probs=32.7
Q ss_pred cccccccccccCCceEEcCCCC-----CcccHhHHHHHHhCC--CCCcccc
Q 029206 113 DCAICLVDFMDGEKVRVLPKCN-----HGFHVRCIDTWLMSH--SSCPTCR 156 (197)
Q Consensus 113 ~C~ICl~~~~~~~~i~~lp~C~-----H~FH~~Ci~~Wl~~~--~~CP~CR 156 (197)
.|.||++. .+++.....| |. |.+|..|++.|+..+ .+||+|+
T Consensus 1 ~CrIC~~~-~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDE-GDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCC-CCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 48999983 4444555777 86 899999999999554 4799995
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.8e-08 Score=82.15 Aligned_cols=50 Identities=26% Similarity=0.679 Sum_probs=40.8
Q ss_pred CCCCcccccccccccCCceEEcCCCCCcccHhHHHH-HHhCCCC-CcccccCCcCC
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDT-WLMSHSS-CPTCRRSLLDQ 162 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~-Wl~~~~~-CP~CR~~v~~~ 162 (197)
..+.+|+||+++.+.. ..++ |||+||..||.. |-+++.. ||+||+.+..+
T Consensus 213 ~~d~kC~lC~e~~~~p---s~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEPEVP---SCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeecccCCc---cccc-ccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 4477899999886444 5676 999999999999 9877766 99999987654
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.54 E-value=4.8e-08 Score=58.91 Aligned_cols=34 Identities=35% Similarity=0.705 Sum_probs=21.3
Q ss_pred ccccccccccCC-ceEEcCCCCCcccHhHHHHHHhCC
Q 029206 114 CAICLVDFMDGE-KVRVLPKCNHGFHVRCIDTWLMSH 149 (197)
Q Consensus 114 C~ICl~~~~~~~-~i~~lp~C~H~FH~~Ci~~Wl~~~ 149 (197)
|+||.+ |.+.+ .-.+|+ |||+|+++||+.|+..+
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcC
Confidence 899999 76544 447788 99999999999999754
No 30
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=6.2e-08 Score=68.14 Aligned_cols=52 Identities=37% Similarity=0.745 Sum_probs=38.1
Q ss_pred CCCcccccccccc-------c-----CC--ceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCC
Q 029206 110 KATDCAICLVDFM-------D-----GE--KVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQ 162 (197)
Q Consensus 110 ~~~~C~ICl~~~~-------~-----~~--~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~ 162 (197)
.-+.|+||...+- . .+ .+..-- |+|.||..||.+||+++..||+|.+...-+
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~-CNHaFH~hCisrWlktr~vCPLdn~eW~~q 110 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGV-CNHAFHFHCISRWLKTRNVCPLDNKEWVFQ 110 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeee-cchHHHHHHHHHHHhhcCcCCCcCcceeEe
Confidence 3467999976641 1 11 233333 999999999999999999999998766443
No 31
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.2e-07 Score=83.63 Aligned_cols=47 Identities=30% Similarity=0.526 Sum_probs=36.9
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC-----CCCcccccCCcC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH-----SSCPTCRRSLLD 161 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~-----~~CP~CR~~v~~ 161 (197)
+..|+|||++.... ..+. |||+||..||-+++... ..||+||..|..
T Consensus 186 ~~~CPICL~~~~~p---~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcc---cccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 67899999885443 2343 99999999999988543 569999998855
No 32
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.41 E-value=4.8e-08 Score=65.25 Aligned_cols=51 Identities=29% Similarity=0.823 Sum_probs=24.0
Q ss_pred CCcccccccccccCCce--EEc--CCCCCcccHhHHHHHHhC----C-------CCCcccccCCcC
Q 029206 111 ATDCAICLVDFMDGEKV--RVL--PKCNHGFHVRCIDTWLMS----H-------SSCPTCRRSLLD 161 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i--~~l--p~C~H~FH~~Ci~~Wl~~----~-------~~CP~CR~~v~~ 161 (197)
+.+|.||+..+.+++.+ .+. +.|++.||..||.+||.. + .+||.|+.+|..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 45799999987633322 233 258999999999999942 1 249999988743
No 33
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.41 E-value=9.8e-08 Score=82.97 Aligned_cols=50 Identities=32% Similarity=0.804 Sum_probs=39.6
Q ss_pred CCCCCcccccccccccCCc-eEEcCCCCCcccHhHHHHHHhCCCCCcccccCCc
Q 029206 108 KIKATDCAICLVDFMDGEK-VRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~-i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
..+-.+|+|||+.++.... ++... |.|.||..|+..|. ..+||+||....
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeee-cccccchHHHhhcc--cCcChhhhhhcC
Confidence 4456789999999977653 44444 99999999999994 678999997654
No 34
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.29 E-value=1.7e-07 Score=87.63 Aligned_cols=58 Identities=28% Similarity=0.636 Sum_probs=41.4
Q ss_pred cCCCCCCCCCcccccccccccCC-c--eEEcCCCCCcccHhHHHHHHhC--CCCCcccccCCc
Q 029206 103 GAAGVKIKATDCAICLVDFMDGE-K--VRVLPKCNHGFHVRCIDTWLMS--HSSCPTCRRSLL 160 (197)
Q Consensus 103 ~~~~~~~~~~~C~ICl~~~~~~~-~--i~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~v~ 160 (197)
+......+-.+|+||..-+..-+ . -..++.|.|.||..|+-+|++. +.+||+||..+.
T Consensus 1461 Ni~~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1461 NIDEKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hhhhhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 33334566788999998775211 1 1234459999999999999976 467999998764
No 35
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.27 E-value=7.2e-07 Score=75.14 Aligned_cols=52 Identities=25% Similarity=0.614 Sum_probs=38.0
Q ss_pred CCcccccccc-cccCC-ceEEcCCCCCcccHhHHHHHHhC-CCCCcccccCCcCCC
Q 029206 111 ATDCAICLVD-FMDGE-KVRVLPKCNHGFHVRCIDTWLMS-HSSCPTCRRSLLDQP 163 (197)
Q Consensus 111 ~~~C~ICl~~-~~~~~-~i~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~v~~~~ 163 (197)
+..|++|... |-.++ .+.+.+ |||.||..|++..+.. ...||.|+..+....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 4579999985 33333 333444 9999999999996644 457999998886544
No 36
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.23 E-value=3.9e-07 Score=76.86 Aligned_cols=49 Identities=31% Similarity=0.699 Sum_probs=42.1
Q ss_pred CcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCCCC
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQPT 164 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~~~ 164 (197)
..|.||.+.|..+ .++| |+|.||.-||+.+|..+..||.|+..+.+.+-
T Consensus 24 LRC~IC~eyf~ip---~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~L 72 (442)
T KOG0287|consen 24 LRCGICFEYFNIP---MITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTESDL 72 (442)
T ss_pred HHHhHHHHHhcCc---eecc-ccchHHHHHHHHHhccCCCCCceecccchhhh
Confidence 4699999998665 3566 99999999999999999999999998876543
No 37
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=5.9e-07 Score=76.92 Aligned_cols=46 Identities=26% Similarity=0.824 Sum_probs=34.8
Q ss_pred CcccccccccccCCceEEcCCCCCcccHhHHHHHHhC---CCCCccccc
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS---HSSCPTCRR 157 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~ 157 (197)
..|.||.+-+.....+.-...|||+||..|+.+|+.. +++||+|+-
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~i 53 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQI 53 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceee
Confidence 4699995555444455444459999999999999964 367999993
No 38
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=7.6e-07 Score=73.43 Aligned_cols=44 Identities=36% Similarity=0.807 Sum_probs=38.3
Q ss_pred CCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccc
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCR 156 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR 156 (197)
.+...|+||++.|... ..++ |+|.||..|+..++.....||.||
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence 3456799999999888 6787 999999999999988556799999
No 39
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.8e-06 Score=73.45 Aligned_cols=49 Identities=29% Similarity=0.752 Sum_probs=40.7
Q ss_pred CCCCcccccccccccCCceEEcCCCCCc-ccHhHHHHHHhCCCCCcccccCCcC
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHG-FHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
....+|.|||.+ .....+|| |-|. .|..|-+.-.-++..||+||+++.+
T Consensus 288 ~~gkeCVIClse---~rdt~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSE---SRDTVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecC---CcceEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 447889999977 34456899 9997 9999999976778889999999854
No 40
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.10 E-value=1.7e-06 Score=58.21 Aligned_cols=48 Identities=25% Similarity=0.419 Sum_probs=35.9
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhC-CCCCcccccCCcCC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS-HSSCPTCRRSLLDQ 162 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~v~~~ 162 (197)
...|+|+.+-|.++ ..++ +||.|.+.||..|+.. +.+||+|+.++...
T Consensus 4 ~f~CpIt~~lM~dP---Vi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 4 EFLCPITGELMRDP---VILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGB-TTTSSB-SSE---EEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred ccCCcCcCcHhhCc---eeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 35699999998665 3567 9999999999999988 88999999887653
No 41
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.03 E-value=2.4e-06 Score=70.85 Aligned_cols=48 Identities=27% Similarity=0.563 Sum_probs=39.3
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQ 162 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~ 162 (197)
-..|.||-+.|..+ .++.|||.||.-||...|..+..||+||.+..+.
T Consensus 25 ~lrC~IC~~~i~ip----~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~es 72 (391)
T COG5432 25 MLRCRICDCRISIP----CETTCGHTFCSLCIRRHLGTQPFCPVCREDPCES 72 (391)
T ss_pred HHHhhhhhheeecc----eecccccchhHHHHHHHhcCCCCCccccccHHhh
Confidence 35699998777544 3334999999999999999999999999876543
No 42
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=3.1e-06 Score=72.64 Aligned_cols=51 Identities=33% Similarity=0.883 Sum_probs=39.4
Q ss_pred CCCCcccccccccccCC----ceEEcCCCCCcccHhHHHHHH--hC-----CCCCcccccCC
Q 029206 109 IKATDCAICLVDFMDGE----KVRVLPKCNHGFHVRCIDTWL--MS-----HSSCPTCRRSL 159 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~----~i~~lp~C~H~FH~~Ci~~Wl--~~-----~~~CP~CR~~v 159 (197)
..+.+|.||++...+.. ....||.|.|.||..||+.|- ++ .+.||.||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 34678999999875443 134567799999999999999 33 46799999855
No 43
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.97 E-value=1.3e-06 Score=80.49 Aligned_cols=50 Identities=22% Similarity=0.466 Sum_probs=42.2
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
...|++||..+.++......+ |+|.||..||+.|-+.-.+||+||..+..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 456999998887766665565 99999999999999999999999987643
No 44
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.92 E-value=2.4e-06 Score=55.40 Aligned_cols=47 Identities=32% Similarity=0.640 Sum_probs=23.1
Q ss_pred CcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCCC
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQP 163 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~~ 163 (197)
-.|++|.+-++++ + .+..|.|+|+..||..-+. ..||+|+.+.-.++
T Consensus 8 LrCs~C~~~l~~p--v-~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD 54 (65)
T PF14835_consen 8 LRCSICFDILKEP--V-CLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQD 54 (65)
T ss_dssp TS-SSS-S--SS---B----SSS--B-TTTGGGGTT--TB-SSS--B-S-SS
T ss_pred cCCcHHHHHhcCC--c-eeccCccHHHHHHhHHhcC--CCCCCcCChHHHHH
Confidence 4699999888655 2 3345999999999988543 45999998875543
No 45
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=1e-05 Score=69.85 Aligned_cols=47 Identities=34% Similarity=0.813 Sum_probs=36.5
Q ss_pred CCcccccccccccC-CceEEcCCCCCcccHhHHHHHHhC--CCCCccccc
Q 029206 111 ATDCAICLVDFMDG-EKVRVLPKCNHGFHVRCIDTWLMS--HSSCPTCRR 157 (197)
Q Consensus 111 ~~~C~ICl~~~~~~-~~i~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~ 157 (197)
+..|+|||+++... +.....+.|+|.|-.+||+.||.+ ...||.|..
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ 53 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSG 53 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCC
Confidence 56799999999753 444444559999999999999953 245999965
No 46
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.84 E-value=4.1e-06 Score=69.68 Aligned_cols=56 Identities=29% Similarity=0.694 Sum_probs=44.9
Q ss_pred CCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhC-----------------------CCCCcccccCCcCCCCC
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS-----------------------HSSCPTCRRSLLDQPTS 165 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~-----------------------~~~CP~CR~~v~~~~~~ 165 (197)
....+|.|||--|..++.+.+++ |.|.||..|+..+|.. +..||+||..|..+.+.
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~s 191 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEENS 191 (368)
T ss_pred CCCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccccc
Confidence 33567999999999999999998 9999999999887710 12499999999765444
No 47
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=2.5e-05 Score=65.14 Aligned_cols=51 Identities=24% Similarity=0.383 Sum_probs=39.2
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhC-CCCCcccccCCcCCCCC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS-HSSCPTCRRSLLDQPTS 165 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~v~~~~~~ 165 (197)
..+|+||+....-+ ..|+ |+|.||.-||.--... ..+|++||.++...-..
T Consensus 7 ~~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~ 58 (324)
T KOG0824|consen 7 KKECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDF 58 (324)
T ss_pred CCcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCcchhc
Confidence 46899999876554 4565 9999999999876655 45699999998654333
No 48
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=1.5e-05 Score=73.56 Aligned_cols=47 Identities=28% Similarity=0.731 Sum_probs=36.5
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHH-hCCCCCcccccCCcC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWL-MSHSSCPTCRRSLLD 161 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~v~~ 161 (197)
-..|+.|-..+++. ++++|+|+||..|+..-+ .+++.||.|...+..
T Consensus 643 ~LkCs~Cn~R~Kd~----vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDA----VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred ceeCCCccCchhhH----HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 35799998665432 334599999999999988 567889999988754
No 49
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=5.9e-06 Score=70.39 Aligned_cols=44 Identities=25% Similarity=0.611 Sum_probs=31.3
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCc
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
...-|.||+++..+ ...+| |||+-+ |..-- +...+||+||+.+.
T Consensus 304 ~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCccc---eeeec-CCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 34569999988655 55677 999966 55553 33445999998774
No 50
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=1.3e-05 Score=50.09 Aligned_cols=46 Identities=30% Similarity=0.624 Sum_probs=32.7
Q ss_pred CCcccccccccccCCceEEcCCCCCc-ccHhHHHH-HHhCCCCCcccccCCc
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHG-FHVRCIDT-WLMSHSSCPTCRRSLL 160 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~-FH~~Ci~~-Wl~~~~~CP~CR~~v~ 160 (197)
..+|.||++.-.+ . +|-.|||+ .+.+|-.+ |-..+..||+||+++.
T Consensus 7 ~dECTICye~pvd--s--VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVD--S--VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcch--H--HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 3789999976322 2 22249997 78888555 4447889999999874
No 51
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=8e-06 Score=69.38 Aligned_cols=56 Identities=30% Similarity=0.536 Sum_probs=43.1
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhC-CCCCcccccCCcCCCCCC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS-HSSCPTCRRSLLDQPTSS 166 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~v~~~~~~~ 166 (197)
...+..|+|||+-++.. +..+.|.|-||.+||..-++. +.+||.||+.+.......
T Consensus 40 ~~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr 96 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLR 96 (381)
T ss_pred hhhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCC
Confidence 34467799999887543 445579999999999998865 577999999987654443
No 52
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=97.41 E-value=4.9e-05 Score=56.51 Aligned_cols=44 Identities=18% Similarity=0.405 Sum_probs=33.6
Q ss_pred CCcccccccccccCCceEEcCCCC------CcccHhHHHHHHhCCCCCccc
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCN------HGFHVRCIDTWLMSHSSCPTC 155 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~------H~FH~~Ci~~Wl~~~~~CP~C 155 (197)
..+|.||++.+.+.+.+...+ |+ |+||.+|+.+|-+.++.=|.=
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~~~rDPfn 75 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRERNRDPFN 75 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhhccCCCcc
Confidence 568999999998866677776 77 999999999995433333443
No 53
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=97.40 E-value=0.00011 Score=45.08 Aligned_cols=40 Identities=30% Similarity=0.889 Sum_probs=27.1
Q ss_pred ccccccccccCCceEEcCCCC-----CcccHhHHHHHHh--CCCCCccc
Q 029206 114 CAICLVDFMDGEKVRVLPKCN-----HGFHVRCIDTWLM--SHSSCPTC 155 (197)
Q Consensus 114 C~ICl~~~~~~~~i~~lp~C~-----H~FH~~Ci~~Wl~--~~~~CP~C 155 (197)
|-||+++-.+.+.+ +.| |+ ...|.+|+..|+. .+.+|++|
T Consensus 1 CrIC~~~~~~~~~l-i~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPL-ISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-E-E-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCce-ecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 77999986665533 455 66 4799999999996 44669987
No 54
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=5e-05 Score=58.03 Aligned_cols=42 Identities=31% Similarity=0.630 Sum_probs=34.5
Q ss_pred CcccccCCCCCCCCCcccccccccccCCceEEcCCCCCcccHh
Q 029206 98 PVAVYGAAGVKIKATDCAICLVDFMDGEKVRVLPKCNHGFHVR 140 (197)
Q Consensus 98 p~~~~~~~~~~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~ 140 (197)
|...|++........||.|||++++.++.|..|| |-.+||+.
T Consensus 164 PrlsYNdDVL~ddkGECvICLEdL~~GdtIARLP-CLCIYHK~ 205 (205)
T KOG0801|consen 164 PRLSYNDDVLKDDKGECVICLEDLEAGDTIARLP-CLCIYHKQ 205 (205)
T ss_pred cccccccchhcccCCcEEEEhhhccCCCceeccc-eEEEeecC
Confidence 4445555555667789999999999999999999 99999973
No 55
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.34 E-value=8.2e-05 Score=64.16 Aligned_cols=46 Identities=37% Similarity=0.890 Sum_probs=37.6
Q ss_pred CCccccccccccc-CCceEEcCCCCCcccHhHHHHHHhCC--CCCccccc
Q 029206 111 ATDCAICLVDFMD-GEKVRVLPKCNHGFHVRCIDTWLMSH--SSCPTCRR 157 (197)
Q Consensus 111 ~~~C~ICl~~~~~-~~~i~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~ 157 (197)
+..|..|-+.+-. ++.+.-|| |.|+||..|+...|.++ ++||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 4569999888754 45678898 99999999999999664 67999993
No 56
>PHA02862 5L protein; Provisional
Probab=97.28 E-value=0.00016 Score=54.32 Aligned_cols=47 Identities=19% Similarity=0.479 Sum_probs=34.8
Q ss_pred CCcccccccccccCCceEEcCCCC-----CcccHhHHHHHHhC--CCCCcccccCCcCC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCN-----HGFHVRCIDTWLMS--HSSCPTCRRSLLDQ 162 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~-----H~FH~~Ci~~Wl~~--~~~CP~CR~~v~~~ 162 (197)
+..|-||+++-+++ . .| |. ...|.+|+.+|++. +..|++|+.++.-+
T Consensus 2 ~diCWIC~~~~~e~--~--~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 2 SDICWICNDVCDER--N--NF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CCEEEEecCcCCCC--c--cc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 35699999985333 2 34 54 67999999999965 45699999988543
No 57
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.27 E-value=9.1e-05 Score=64.07 Aligned_cols=43 Identities=33% Similarity=0.869 Sum_probs=35.9
Q ss_pred cccccccccccCCceEEcCCCCCcccHhHHHHHHhC--CCCCcccccCC
Q 029206 113 DCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS--HSSCPTCRRSL 159 (197)
Q Consensus 113 ~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~v 159 (197)
-|-||-+. +..+++-| |||..|..|+..|-.. .++||.||..|
T Consensus 371 LCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEI 415 (563)
T KOG1785|consen 371 LCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEI 415 (563)
T ss_pred HHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEe
Confidence 49999744 56678888 9999999999999844 57899999876
No 58
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00033 Score=56.38 Aligned_cols=56 Identities=21% Similarity=0.653 Sum_probs=44.9
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhC--------CCCCcccccCCcCCCCCCcc
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS--------HSSCPTCRRSLLDQPTSSDA 168 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~CR~~v~~~~~~~~~ 168 (197)
..-|..|-..+..+|.+|.. |-|.||.+|++.|-.. ...||.|...|++..+.-..
T Consensus 50 ~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~NlvsP 113 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLVSP 113 (299)
T ss_pred CCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccccch
Confidence 45699999999999988764 9999999999999832 24599999999876554333
No 59
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00025 Score=62.20 Aligned_cols=49 Identities=31% Similarity=0.782 Sum_probs=41.0
Q ss_pred CCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
..+.+|.||+.-+... ..+| |||.|+..||+.-+-....||.||..+.+
T Consensus 82 ~sef~c~vc~~~l~~p---v~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCC---cccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 4567899998887665 3557 99999999999977777789999999876
No 60
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=97.20 E-value=0.00031 Score=53.63 Aligned_cols=50 Identities=20% Similarity=0.509 Sum_probs=35.8
Q ss_pred CCCCCcccccccccccCCceEEcC-CCCC---cccHhHHHHHHhCC--CCCcccccCCcC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLP-KCNH---GFHVRCIDTWLMSH--SSCPTCRRSLLD 161 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp-~C~H---~FH~~Ci~~Wl~~~--~~CP~CR~~v~~ 161 (197)
...+..|-||.++.. +.. .| .|.. ..|.+|+..|+..+ .+|++|+.++.-
T Consensus 5 s~~~~~CRIC~~~~~--~~~--~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 5 SLMDKCCWICKDEYD--VVT--NYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCCeeEecCCCCC--Ccc--CCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 445678999998843 222 34 1444 67999999999654 569999998754
No 61
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.18 E-value=0.0004 Score=44.39 Aligned_cols=42 Identities=31% Similarity=0.627 Sum_probs=27.2
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC--CCCcc
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH--SSCPT 154 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~ 154 (197)
....|+|.+..|+++ ++-. .|+|+|-++.|.+|++++ ..||+
T Consensus 10 ~~~~CPiT~~~~~~P--V~s~-~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDP--VKSK-KCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSE--EEES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCC--cCcC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence 346799999998654 4444 499999999999999443 45998
No 62
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.12 E-value=0.00025 Score=62.31 Aligned_cols=54 Identities=28% Similarity=0.592 Sum_probs=43.2
Q ss_pred CCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCCCCC
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQPTS 165 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~~~~ 165 (197)
..+..|++|...+.++-.. . .|||.||..|+..|+..+..||.|+..+......
T Consensus 19 ~~~l~C~~C~~vl~~p~~~--~-~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQT--T-TCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred cccccCccccccccCCCCC--C-CCCCcccccccchhhccCcCCcccccccchhhcc
Confidence 4457799999998776432 3 4999999999999999999999999887554433
No 63
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0011 Score=57.65 Aligned_cols=47 Identities=28% Similarity=0.693 Sum_probs=36.9
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC--------CCCccccc
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH--------SSCPTCRR 157 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~--------~~CP~CR~ 157 (197)
.-..|.||+++..-..-+..+| |+|+||+.|+..++... -.||-+.-
T Consensus 183 slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 3467999999966557788888 99999999999999432 24877654
No 64
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.001 Score=54.25 Aligned_cols=52 Identities=15% Similarity=0.274 Sum_probs=46.3
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQ 162 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~ 162 (197)
...|++|.+.+.+...+..|..|||+|..+|.+..+.....||+|-.++-+.
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence 3569999999999998888888999999999999888899999998877554
No 65
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.84 E-value=0.0007 Score=66.68 Aligned_cols=51 Identities=27% Similarity=0.671 Sum_probs=39.6
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC----------CCCcccccCC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH----------SSCPTCRRSL 159 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~----------~~CP~CR~~v 159 (197)
...++.|-||+.+--.....+.|. |+|+||..|.+.-|.++ -+||+|+.++
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence 344667999998866666677886 99999999998766443 2599999876
No 66
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.75 E-value=0.0013 Score=40.39 Aligned_cols=45 Identities=20% Similarity=0.533 Sum_probs=22.6
Q ss_pred ccccccccccCC-ceEEcCCCCCcccHhHHHHHHh-CCCCCcccccCC
Q 029206 114 CAICLVDFMDGE-KVRVLPKCNHGFHVRCIDTWLM-SHSSCPTCRRSL 159 (197)
Q Consensus 114 C~ICl~~~~~~~-~i~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~v 159 (197)
|++|.+++...+ .+.-.+ |++.++..|...-+. .+..||-||+++
T Consensus 1 cp~C~e~~d~~d~~~~PC~-Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCE-CGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SST-TS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCc-CCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999985443 444454 889999999988665 467899999875
No 67
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.72 E-value=0.00032 Score=59.34 Aligned_cols=48 Identities=27% Similarity=0.640 Sum_probs=40.7
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
...|.+|-+-|-+...+. .|-|.||+.||-..|.....||.|...+-.
T Consensus 15 ~itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~~CP~C~i~ih~ 62 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESKYCPTCDIVIHK 62 (331)
T ss_pred ceehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhccCCccceeccC
Confidence 457999999887776543 599999999999999999999999887744
No 68
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.71 E-value=0.00065 Score=60.82 Aligned_cols=53 Identities=23% Similarity=0.503 Sum_probs=39.5
Q ss_pred CCCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHh-----CCCCCcccccCCcCCC
Q 029206 107 VKIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLM-----SHSSCPTCRRSLLDQP 163 (197)
Q Consensus 107 ~~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~v~~~~ 163 (197)
...+..+|-+|-++-++ ..... |.|.||+.||..++. .+-+||+|...+.-+.
T Consensus 532 enk~~~~C~lc~d~aed---~i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAED---YIESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred cccCceeecccCChhhh---hHhhh-hhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 35566789999877433 23454 999999999988883 3568999988876553
No 69
>PHA03096 p28-like protein; Provisional
Probab=96.59 E-value=0.001 Score=55.93 Aligned_cols=48 Identities=21% Similarity=0.529 Sum_probs=34.6
Q ss_pred CcccccccccccC----CceEEcCCCCCcccHhHHHHHHhCC---CC---CcccccCC
Q 029206 112 TDCAICLVDFMDG----EKVRVLPKCNHGFHVRCIDTWLMSH---SS---CPTCRRSL 159 (197)
Q Consensus 112 ~~C~ICl~~~~~~----~~i~~lp~C~H~FH~~Ci~~Wl~~~---~~---CP~CR~~v 159 (197)
..|.||++...+. ..-..|+.|.|.|+..|+..|.... .+ ||.|+..+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~ 236 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVI 236 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHH
Confidence 6799999987543 2345677899999999999999543 33 55555443
No 70
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.44 E-value=0.0012 Score=46.90 Aligned_cols=33 Identities=30% Similarity=0.715 Sum_probs=26.8
Q ss_pred CCCCcccccccccccCCceEEcCCCCCcccHhHHH
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCID 143 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~ 143 (197)
..+..|++|-..+.. ....+.| |||+||..|++
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 345679999999877 5566777 99999999975
No 71
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.12 E-value=0.0078 Score=50.07 Aligned_cols=53 Identities=17% Similarity=0.381 Sum_probs=41.2
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
......|+|...+|........+-.|||+|-..+|..- .....||+|-.++..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCcccc
Confidence 34456799999999766666566559999999999994 445679999988753
No 72
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.022 Score=48.44 Aligned_cols=48 Identities=19% Similarity=0.392 Sum_probs=37.0
Q ss_pred CCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCC
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSL 159 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v 159 (197)
.....|++|+..-.++..+.+ -|-+||..|+-+++.+++.||+=..+.
T Consensus 298 ~~~~~CpvClk~r~Nptvl~v---SGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEV---SGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCCceEEe---cceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 344569999988766644322 689999999999999999999854443
No 73
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=96.10 E-value=0.0027 Score=59.66 Aligned_cols=52 Identities=29% Similarity=0.659 Sum_probs=39.1
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC-------CCCcccccCC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH-------SSCPTCRRSL 159 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~-------~~CP~CR~~v 159 (197)
.....+|.||.+.+...+.+--...|=|+||..||..|-+.. -.||.|....
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred hcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 445678999999998776654333488999999999999542 1399998433
No 74
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.00035 Score=60.23 Aligned_cols=49 Identities=27% Similarity=0.674 Sum_probs=43.5
Q ss_pred CCcccccccccccC-CceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCc
Q 029206 111 ATDCAICLVDFMDG-EKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 111 ~~~C~ICl~~~~~~-~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
...|+||...|+.. +.+..+. |+|.+|..||.+||.....||.||+.+.
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~ 245 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELP 245 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence 45699999999877 7787887 9999999999999999889999999773
No 75
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.98 E-value=0.0038 Score=49.40 Aligned_cols=44 Identities=25% Similarity=0.536 Sum_probs=36.5
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRS 158 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 158 (197)
...|.||-.+|+.+ .++. |||.||..|...-++....|-+|.+.
T Consensus 196 PF~C~iCKkdy~sp---vvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 196 PFLCGICKKDYESP---VVTE-CGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred ceeehhchhhccch---hhhh-cchhHHHHHHHHHhccCCcceecchh
Confidence 34699999999766 2444 99999999999988889999999653
No 76
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.055 Score=44.97 Aligned_cols=51 Identities=22% Similarity=0.398 Sum_probs=37.1
Q ss_pred CCCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC--CCCcccccCCc
Q 029206 107 VKIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH--SSCPTCRRSLL 160 (197)
Q Consensus 107 ~~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~v~ 160 (197)
....+.+|++|-+.-..+ ....+ |+|+||.-||..-+... -+||.|-.++.
T Consensus 235 ~~t~~~~C~~Cg~~PtiP--~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIP--HVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccCCceeeccCCCCCCC--eeecc-ccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 345678899997653222 23344 99999999999877654 57999988775
No 77
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.92 E-value=0.0025 Score=51.83 Aligned_cols=44 Identities=23% Similarity=0.581 Sum_probs=32.7
Q ss_pred cccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCc
Q 029206 113 DCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 113 ~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
.|.-|..- ..++....+. |.|+||..|...-. ...||+||+++-
T Consensus 5 hCn~C~~~-~~~~~f~LTa-C~HvfC~~C~k~~~--~~~C~lCkk~ir 48 (233)
T KOG4739|consen 5 HCNKCFRF-PSQDPFFLTA-CRHVFCEPCLKASS--PDVCPLCKKSIR 48 (233)
T ss_pred Eecccccc-CCCCceeeee-chhhhhhhhcccCC--ccccccccceee
Confidence 47777655 3477888886 99999999966522 238999999863
No 78
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=95.92 E-value=0.011 Score=37.10 Aligned_cols=41 Identities=27% Similarity=0.769 Sum_probs=33.5
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcc
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPT 154 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~ 154 (197)
....|.+|-+.|.+++.+.+.|.|+-.+|++|.+. ...|-.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~ 44 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCIN 44 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEe
Confidence 45679999999998888889999999999999654 445544
No 79
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.0036 Score=52.34 Aligned_cols=44 Identities=27% Similarity=0.456 Sum_probs=37.0
Q ss_pred CcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCC
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSL 159 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v 159 (197)
..|-||...|..+ .++ +|+|.||..|-..=+++...|.+|.+..
T Consensus 242 f~c~icr~~f~~p---Vvt-~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 242 FKCFICRKYFYRP---VVT-KCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred ccccccccccccc---hhh-cCCceeehhhhccccccCCcceeccccc
Confidence 4599999999776 244 4999999999998888889999997755
No 80
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.0029 Score=52.88 Aligned_cols=42 Identities=29% Similarity=0.672 Sum_probs=31.5
Q ss_pred CCcccccccccccCCceEEcCCCCCc-ccHhHHHHHHhCCCCCcccccCCc
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHG-FHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
..-|+||++. +.....|+ |||. -|.+|-.. -..||+||+.+.
T Consensus 300 ~~LC~ICmDa---P~DCvfLe-CGHmVtCt~CGkr----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDA---PRDCVFLE-CGHMVTCTKCGKR----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcC---CcceEEee-cCcEEeehhhccc----cccCchHHHHHH
Confidence 4559999966 56678888 9996 67788433 347999998664
No 81
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.011 Score=50.63 Aligned_cols=50 Identities=26% Similarity=0.592 Sum_probs=41.8
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
..++..|+||... +......| |+|.-|..||.+-+.+.+.|=.|+..+.+
T Consensus 419 ~sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 419 DSEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred CcccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 3567789999754 44455677 99999999999999999999999998875
No 82
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.20 E-value=0.023 Score=47.81 Aligned_cols=45 Identities=31% Similarity=0.722 Sum_probs=33.9
Q ss_pred CcccccccccccCCceEEcCCCCCcccHhHHHHHHhC-CCCCccccc-CC
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS-HSSCPTCRR-SL 159 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~-~v 159 (197)
..|+.|-.-+.+.- .++.|+|.||.+||..-|.. ...||.|.+ .+
T Consensus 275 LkCplc~~Llrnp~---kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdv 321 (427)
T COG5222 275 LKCPLCHCLLRNPM---KTPCCGHTFCDECIGTALLDSDFKCPNCSRKDV 321 (427)
T ss_pred ccCcchhhhhhCcc---cCccccchHHHHHHhhhhhhccccCCCcccccc
Confidence 67999987765543 33569999999999987754 567999944 44
No 83
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.015 Score=45.28 Aligned_cols=31 Identities=29% Similarity=0.877 Sum_probs=24.5
Q ss_pred CCCCcccHhHHHHHHhC----C-------CCCcccccCCcCC
Q 029206 132 KCNHGFHVRCIDTWLMS----H-------SSCPTCRRSLLDQ 162 (197)
Q Consensus 132 ~C~H~FH~~Ci~~Wl~~----~-------~~CP~CR~~v~~~ 162 (197)
.||.-||.-|+..||+. + ..||.|..++.-+
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 49999999999999942 1 2499998887543
No 84
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=95.18 E-value=0.011 Score=35.51 Aligned_cols=41 Identities=27% Similarity=0.733 Sum_probs=21.3
Q ss_pred ccccccccccCCceEEcCCCCCcccHhHHHHHHhCCC--CCccc
Q 029206 114 CAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHS--SCPTC 155 (197)
Q Consensus 114 C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~--~CP~C 155 (197)
|.+|-+-.-.+...... .|+=.+|..|++.+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 55665554444333222 3888899999999997765 69987
No 85
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.02 E-value=0.013 Score=36.84 Aligned_cols=44 Identities=30% Similarity=0.573 Sum_probs=31.7
Q ss_pred CcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
..|..|... +..-..+| |+|+.+..|++-+ +-.-||+|.+++..
T Consensus 8 ~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 8 QPCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred eeEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccC
Confidence 346666533 44456787 9999999998875 44569999988754
No 86
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.97 E-value=0.0095 Score=56.18 Aligned_cols=41 Identities=24% Similarity=0.667 Sum_probs=31.0
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCccccc
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRR 157 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 157 (197)
...|..|-..++-+. +-- .|+|.||.+|+. .....||-|+.
T Consensus 840 ~skCs~C~~~LdlP~-VhF--~CgHsyHqhC~e---~~~~~CP~C~~ 880 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPF-VHF--LCGHSYHQHCLE---DKEDKCPKCLP 880 (933)
T ss_pred eeeecccCCccccce-eee--ecccHHHHHhhc---cCcccCCccch
Confidence 367999988875553 222 399999999988 34567999987
No 87
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.53 E-value=0.028 Score=48.19 Aligned_cols=64 Identities=23% Similarity=0.428 Sum_probs=40.3
Q ss_pred HHHhcCCcccccCCCCC-CCCCcccccccccccCCceEEcCCCCCcccHhHHHH--HHhCCCCCcccccCC
Q 029206 92 SALRQIPVAVYGAAGVK-IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDT--WLMSHSSCPTCRRSL 159 (197)
Q Consensus 92 ~~~~~lp~~~~~~~~~~-~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~--Wl~~~~~CP~CR~~v 159 (197)
..+..-|...-.+.+.. ++..-|.||-+.. ....++| |+|..|.-|--. -|-.++.||+||...
T Consensus 41 NnlsaEPnlttsSaddtDEen~~C~ICA~~~---TYs~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 41 NNLSAEPNLTTSSADDTDEENMNCQICAGST---TYSARYP-CGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccccCCccccccccccccccceeEEecCCc---eEEEecc-CCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 33333444433333333 3334499998664 4556788 999988888644 235678899999854
No 88
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.33 E-value=0.03 Score=47.90 Aligned_cols=53 Identities=23% Similarity=0.499 Sum_probs=38.1
Q ss_pred CCCcccccccccccCCc-eEEcCCCCCcccHhHHHHHHh-CCCCCcccccCCcCCC
Q 029206 110 KATDCAICLVDFMDGEK-VRVLPKCNHGFHVRCIDTWLM-SHSSCPTCRRSLLDQP 163 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~-i~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~v~~~~ 163 (197)
+++-|+.|+++++-.|+ ..-.+ ||...|.-|...--+ -+..||-||+.+.+..
T Consensus 13 eed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 34459999999986554 34555 998888888766321 2567999999876553
No 89
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=94.19 E-value=0.022 Score=47.66 Aligned_cols=47 Identities=30% Similarity=0.676 Sum_probs=38.0
Q ss_pred cccccccccccCC-ceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 113 DCAICLVDFMDGE-KVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 113 ~C~ICl~~~~~~~-~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
-|+||.+.+-... .+..++ |||.-|..|+......+-+||+|.+ +.+
T Consensus 160 ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~-~~d 207 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK-PGD 207 (276)
T ss_pred CCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc-hHH
Confidence 3999998875544 445666 9999999999999888899999988 533
No 90
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=0.033 Score=46.89 Aligned_cols=47 Identities=32% Similarity=0.730 Sum_probs=37.0
Q ss_pred CcccccccccccCC--c-eEEcCCCCCcccHhHHHHHHhCC-CCCcccccCC
Q 029206 112 TDCAICLVDFMDGE--K-VRVLPKCNHGFHVRCIDTWLMSH-SSCPTCRRSL 159 (197)
Q Consensus 112 ~~C~ICl~~~~~~~--~-i~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~v 159 (197)
.+|-||-++|...+ . -+.|. |||.|+..|+..-+... ..||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence 57999999998663 2 35665 99999999999866443 4599999985
No 91
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.72 E-value=0.024 Score=47.84 Aligned_cols=43 Identities=28% Similarity=0.614 Sum_probs=29.1
Q ss_pred CcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCC
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSL 159 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v 159 (197)
..|--|=-. -...-|+.| |+|+||.+|-.. ...+.||.|-..|
T Consensus 91 HfCd~Cd~P--I~IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 91 HFCDRCDFP--IAIYGRMIP-CKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred EeecccCCc--ceeeecccc-cchhhhhhhhhc--CccccCcCcccHH
Confidence 346666322 234458888 999999999654 3356799986554
No 92
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.39 E-value=0.025 Score=55.66 Aligned_cols=47 Identities=32% Similarity=0.680 Sum_probs=38.6
Q ss_pred CcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
..|.||++.+.+...+. .|+|.+++.|+..|+..+..||.|+....+
T Consensus 1154 ~~c~ic~dil~~~~~I~---~cgh~~c~~c~~~~l~~~s~~~~~ksi~~d 1200 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQGGIA---GCGHEPCCRCDELWLYASSRCPICKSIKGD 1200 (1394)
T ss_pred cchHHHHHHHHhcCCee---eechhHhhhHHHHHHHHhccCcchhhhhhh
Confidence 47999999987654443 399999999999999999999999854433
No 93
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.29 E-value=0.034 Score=52.22 Aligned_cols=47 Identities=28% Similarity=0.665 Sum_probs=36.0
Q ss_pred CcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC--CCCcccccCCcCCC
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH--SSCPTCRRSLLDQP 163 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~v~~~~ 163 (197)
..|.||++ .+.....+ |+|.|+.+|+..-+... ..||+||..+..+.
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 78999998 34455565 99999999999877442 35999998775543
No 94
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.13 E-value=0.042 Score=52.22 Aligned_cols=37 Identities=24% Similarity=0.512 Sum_probs=28.5
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHH
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWL 146 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl 146 (197)
...+..|.+|.-.+... .-.+-| |||.||++||..-.
T Consensus 814 ~ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred ecCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 34567899998887665 344666 99999999997765
No 95
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=93.09 E-value=0.054 Score=45.67 Aligned_cols=50 Identities=20% Similarity=0.667 Sum_probs=35.9
Q ss_pred CCcccccccccccCCc-eEEcCCCC-----CcccHhHHHHHHh--CCCCCcccccCCcC
Q 029206 111 ATDCAICLVDFMDGEK-VRVLPKCN-----HGFHVRCIDTWLM--SHSSCPTCRRSLLD 161 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~-i~~lp~C~-----H~FH~~Ci~~Wl~--~~~~CP~CR~~v~~ 161 (197)
+..|-||.++...... ....| |. +..|..|++.|+. .+..|.+|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 4679999998654432 23444 55 6789999999997 45569999886643
No 96
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.03 E-value=0.055 Score=50.74 Aligned_cols=26 Identities=27% Similarity=0.683 Sum_probs=22.7
Q ss_pred EEcCCCCCcccHhHHHHHHhCCCCCcc
Q 029206 128 RVLPKCNHGFHVRCIDTWLMSHSSCPT 154 (197)
Q Consensus 128 ~~lp~C~H~FH~~Ci~~Wl~~~~~CP~ 154 (197)
.... |+|+-|.+|...|+.....||.
T Consensus 1044 ~Cg~-C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1044 FCGT-CGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hhcc-ccccccHHHHHHHHhcCCcCCC
Confidence 3444 9999999999999999999985
No 97
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=92.99 E-value=0.076 Score=50.21 Aligned_cols=54 Identities=19% Similarity=0.560 Sum_probs=39.9
Q ss_pred CCCCCCcccccccccccCCceEEcCCCC-----CcccHhHHHHHHhCC--CCCcccccCCcCC
Q 029206 107 VKIKATDCAICLVDFMDGEKVRVLPKCN-----HGFHVRCIDTWLMSH--SSCPTCRRSLLDQ 162 (197)
Q Consensus 107 ~~~~~~~C~ICl~~~~~~~~i~~lp~C~-----H~FH~~Ci~~Wl~~~--~~CP~CR~~v~~~ 162 (197)
+..++..|-||..+=.+++.+ ..| |+ ...|++|+-+|+.-. ..|-+|+.++.-+
T Consensus 8 mN~d~~~CRICr~e~~~d~pL-fhP-CKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 8 MNEDKRSCRICRTEDIRDDPL-FHP-CKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK 68 (1175)
T ss_pred CCccchhceeecCCCCCCCcC-ccc-ccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence 445567899999996666655 344 55 569999999999654 4599999887543
No 98
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=92.73 E-value=0.061 Score=32.78 Aligned_cols=29 Identities=28% Similarity=0.753 Sum_probs=21.6
Q ss_pred CC-CcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 133 CN-HGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 133 C~-H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
|+ |..+..|+..-+.+...||+|..+++.
T Consensus 18 C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp -SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred ecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 77 999999999988888999999988864
No 99
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=92.70 E-value=0.15 Score=39.05 Aligned_cols=35 Identities=20% Similarity=0.470 Sum_probs=21.1
Q ss_pred CCcccccccccccCCceE---------EcCCCCC-cccHhHHHHHH
Q 029206 111 ATDCAICLVDFMDGEKVR---------VLPKCNH-GFHVRCIDTWL 146 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~---------~lp~C~H-~FH~~Ci~~Wl 146 (197)
+..|+|||+--.+.-.+. --- |+- .-|..|||++-
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpym-c~Ts~rhSNCLdqfk 46 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYM-CDTSYRHSNCLDQFK 46 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccc-cCCccchhHHHHHHH
Confidence 467999998754432111 111 453 35788999965
No 100
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.63 E-value=0.055 Score=44.55 Aligned_cols=53 Identities=26% Similarity=0.616 Sum_probs=36.2
Q ss_pred CCCCCcccccccccccCCce-EEcCCCC-----CcccHhHHHHHHhCC--------CCCcccccCCcC
Q 029206 108 KIKATDCAICLVDFMDGEKV-RVLPKCN-----HGFHVRCIDTWLMSH--------SSCPTCRRSLLD 161 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i-~~lp~C~-----H~FH~~Ci~~Wl~~~--------~~CP~CR~~v~~ 161 (197)
...+.-|=||+..=+++..- -+-| |. |-.|..||..|+-.+ -+||-|+..+..
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred cccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 44566799999884443322 2334 54 889999999999322 249999997753
No 101
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.37 E-value=0.038 Score=50.88 Aligned_cols=42 Identities=31% Similarity=0.612 Sum_probs=32.5
Q ss_pred cccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCccccc
Q 029206 113 DCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRR 157 (197)
Q Consensus 113 ~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 157 (197)
-|.||+..|-.....-+...|||..|..|+..- .+.+|| |++
T Consensus 13 ~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~ 54 (861)
T KOG3161|consen 13 LCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKR 54 (861)
T ss_pred hchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCc
Confidence 499999998776655555569999999999874 456888 543
No 102
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=92.26 E-value=0.1 Score=45.37 Aligned_cols=28 Identities=32% Similarity=0.981 Sum_probs=20.2
Q ss_pred CCCcccHhHHHHHHhCC-------------CCCcccccCCc
Q 029206 133 CNHGFHVRCIDTWLMSH-------------SSCPTCRRSLL 160 (197)
Q Consensus 133 C~H~FH~~Ci~~Wl~~~-------------~~CP~CR~~v~ 160 (197)
|.-+.|.+|+-+|+..+ -.||.||+.+.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 34556789999999322 25999999764
No 103
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=91.52 E-value=0.18 Score=37.43 Aligned_cols=8 Identities=13% Similarity=0.629 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 029206 43 IILAALLC 50 (197)
Q Consensus 43 iil~~~~~ 50 (197)
++++++++
T Consensus 3 ~l~~iii~ 10 (130)
T PF12273_consen 3 VLFAIIIV 10 (130)
T ss_pred eeHHHHHH
Confidence 33433333
No 104
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.07 E-value=0.11 Score=41.89 Aligned_cols=38 Identities=32% Similarity=0.674 Sum_probs=28.5
Q ss_pred ccccccccccCCceEEcCCCCCc-ccHhHHHHHHhCCCCCcccccCC
Q 029206 114 CAICLVDFMDGEKVRVLPKCNHG-FHVRCIDTWLMSHSSCPTCRRSL 159 (197)
Q Consensus 114 C~ICl~~~~~~~~i~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~v 159 (197)
|-.|-+ ....+..+| |.|. +|..|=.. -..||+|+...
T Consensus 161 Cr~C~~---~~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGE---REATVLLLP-CRHLCLCGICDES----LRICPICRSPK 199 (207)
T ss_pred ceecCc---CCceEEeec-ccceEeccccccc----CccCCCCcChh
Confidence 778864 466788898 9986 77889554 34599998765
No 105
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.02 E-value=0.89 Score=39.77 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=35.3
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCC---CCccc
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHS---SCPTC 155 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~---~CP~C 155 (197)
+...|||=.+.-.+...-..|. |||+..++-|++-.+... .||+|
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred ceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCC
Confidence 3456999877766666677887 999999999999555443 49999
No 106
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=89.72 E-value=0.31 Score=30.27 Aligned_cols=42 Identities=33% Similarity=0.815 Sum_probs=22.9
Q ss_pred ccccccccccC------CceEEcCCCCCcccHhHHHHHHhC-CCCCcccc
Q 029206 114 CAICLVDFMDG------EKVRVLPKCNHGFHVRCIDTWLMS-HSSCPTCR 156 (197)
Q Consensus 114 C~ICl~~~~~~------~~i~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR 156 (197)
|.-|+.+|... ......+.|++.|+.+| |.++.. =.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 56677777664 35677788999999999 444432 25699884
No 107
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=88.98 E-value=1.1 Score=25.96 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029206 42 VIILAALLCALICALGLNSIVRCALRC 68 (197)
Q Consensus 42 ~iil~~~~~~~i~~l~i~~~~~~~~r~ 68 (197)
.++.++++++.++++.+ +++.|+.|+
T Consensus 7 aIIv~V~vg~~iiii~~-~~YaCcykk 32 (38)
T PF02439_consen 7 AIIVAVVVGMAIIIICM-FYYACCYKK 32 (38)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHcc
Confidence 33444444444433333 334444443
No 108
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=88.88 E-value=0.33 Score=41.24 Aligned_cols=46 Identities=22% Similarity=0.410 Sum_probs=33.7
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
.-.+|+||.+.+..+. .+.. =||..|..|-. +....||.||.++..
T Consensus 47 ~lleCPvC~~~l~~Pi--~QC~-nGHlaCssC~~---~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPI--FQCD-NGHLACSSCRT---KVSNKCPTCRLPIGN 92 (299)
T ss_pred hhccCchhhccCcccc--eecC-CCcEehhhhhh---hhcccCCcccccccc
Confidence 3467999999987763 3322 35999999865 456779999998863
No 109
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=88.28 E-value=0.47 Score=39.82 Aligned_cols=49 Identities=22% Similarity=0.626 Sum_probs=34.6
Q ss_pred cccccccc-cccCCceEEcCCCCCcccHhHHHHHHhCC-CCCcccccCCcC
Q 029206 113 DCAICLVD-FMDGEKVRVLPKCNHGFHVRCIDTWLMSH-SSCPTCRRSLLD 161 (197)
Q Consensus 113 ~C~ICl~~-~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~v~~ 161 (197)
.|++|-.. |-+++...+...|+|-.|.+|++.-+..+ ..||-|...+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 48888654 44455433333499999999999977554 569999876644
No 110
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.97 E-value=0.27 Score=45.20 Aligned_cols=50 Identities=28% Similarity=0.784 Sum_probs=40.3
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCCCCC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQPTS 165 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~~~~ 165 (197)
......|.||+.++ ..+..+ |. |..|+..|+..+..||+|+..+..+...
T Consensus 476 ~~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~ 525 (543)
T KOG0802|consen 476 REPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDDFL 525 (543)
T ss_pred hcccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhccccc
Confidence 34456799999887 456666 88 9999999999999999999888665444
No 111
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=87.73 E-value=0.14 Score=47.73 Aligned_cols=46 Identities=28% Similarity=0.678 Sum_probs=35.6
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC---CCCcccccCCc
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH---SSCPTCRRSLL 160 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~v~ 160 (197)
..+|+||+..+.++ .+.+|.|.|+..|+..-+... ..||+|+..+.
T Consensus 21 ~lEc~ic~~~~~~p----~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 21 ILECPICLEHVKEP----SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hccCCceeEEeecc----chhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 46799999999887 333599999999988766443 46999986653
No 112
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=87.57 E-value=1.6 Score=32.21 Aligned_cols=18 Identities=17% Similarity=0.145 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 029206 39 TNMVIILAALLCALICAL 56 (197)
Q Consensus 39 ~~~~iil~~~~~~~i~~l 56 (197)
...+|++++++++++.++
T Consensus 65 ~i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHH
Confidence 455555555555544443
No 113
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.03 E-value=0.34 Score=40.80 Aligned_cols=28 Identities=25% Similarity=0.791 Sum_probs=21.5
Q ss_pred CCCcccHhHHHHHHhC-------------CCCCcccccCCc
Q 029206 133 CNHGFHVRCIDTWLMS-------------HSSCPTCRRSLL 160 (197)
Q Consensus 133 C~H~FH~~Ci~~Wl~~-------------~~~CP~CR~~v~ 160 (197)
|....|.+|+.+|+.. +-+||+||+.+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 5567788999999832 346999999874
No 114
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=86.87 E-value=0.45 Score=35.50 Aligned_cols=52 Identities=19% Similarity=0.408 Sum_probs=35.5
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHHHh---CCCCCcccccCCcC
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLM---SHSSCPTCRRSLLD 161 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~CR~~v~~ 161 (197)
.-.+|.||.+.-.+..-+.----||-..+..|--.-++ .+..||+|+.++-.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 35789999987544433322223998899988766553 45679999998743
No 115
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=86.61 E-value=1.1 Score=33.00 Aligned_cols=29 Identities=10% Similarity=0.244 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 029206 41 MVIILAALLCALICALGLNSIVRCALRCS 69 (197)
Q Consensus 41 ~~iil~~~~~~~i~~l~i~~~~~~~~r~~ 69 (197)
--.+++|++++++.++++.+++.|+.||+
T Consensus 63 ~~~i~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 63 EPAIIGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555554444443
No 116
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=86.32 E-value=0.24 Score=45.59 Aligned_cols=42 Identities=29% Similarity=0.721 Sum_probs=26.1
Q ss_pred CCCcccccccc-----cccCCceEEcCCCCCcccHhHHHHHHhCCCCCccc
Q 029206 110 KATDCAICLVD-----FMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTC 155 (197)
Q Consensus 110 ~~~~C~ICl~~-----~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~C 155 (197)
.+..|.+|-.. |+.....+.. .|+++||+.|+.. .+..||-|
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~-~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCS-TCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHH-HHHHHHHHHHHhc---cCCCCCch
Confidence 34567777221 4433334444 4999999999554 33349999
No 117
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.05 E-value=0.29 Score=43.09 Aligned_cols=39 Identities=28% Similarity=0.689 Sum_probs=28.5
Q ss_pred CCCcccccccccccC-CceEEcCCCCCcccHhHHHHHHhCC
Q 029206 110 KATDCAICLVDFMDG-EKVRVLPKCNHGFHVRCIDTWLMSH 149 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~-~~i~~lp~C~H~FH~~Ci~~Wl~~~ 149 (197)
...+|.||..++... +..... .|+|.|+.+|+.+.+..+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~-~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVL-KCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred ccccCccCccccccHhhhHHHh-cccchhhhHHhHHHhhhh
Confidence 356799999554443 444545 499999999999988643
No 118
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=85.53 E-value=0.62 Score=37.28 Aligned_cols=41 Identities=39% Similarity=0.815 Sum_probs=29.7
Q ss_pred CCCcccccccc-----cccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccc
Q 029206 110 KATDCAICLVD-----FMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCR 156 (197)
Q Consensus 110 ~~~~C~ICl~~-----~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR 156 (197)
.+..|-+|-++ |+. +.+...+.|+-+||+.|+. . ..||-|.
T Consensus 151 kGfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~----~-~~CpkC~ 196 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFR----K-KSCPKCA 196 (202)
T ss_pred CCCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcC----C-CCCCCcH
Confidence 35678888753 333 3556666799999999966 2 6799994
No 119
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=85.50 E-value=0.37 Score=39.47 Aligned_cols=49 Identities=27% Similarity=0.704 Sum_probs=36.6
Q ss_pred CCcccccccc-c-ccCCceEEcCCCCCcccHhHHHHHHhCCC-CCc--ccccCC
Q 029206 111 ATDCAICLVD-F-MDGEKVRVLPKCNHGFHVRCIDTWLMSHS-SCP--TCRRSL 159 (197)
Q Consensus 111 ~~~C~ICl~~-~-~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~-~CP--~CR~~v 159 (197)
+..|++|-.+ | .++-.+.+.|.|-|-.|.+|++.-+.... .|| -|.+-+
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 5579999866 3 33445667777999999999999887654 599 786544
No 120
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=83.81 E-value=6.9 Score=28.35 Aligned_cols=33 Identities=21% Similarity=0.483 Sum_probs=22.1
Q ss_pred cCCCCCcccHhHHHHHHhCCCCCcccccCCcCCCCCCcc
Q 029206 130 LPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQPTSSDA 168 (197)
Q Consensus 130 lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~~~~~~~ 168 (197)
.|.|+|. ..-+.+...|+.|++++.-++...++
T Consensus 72 CP~C~K~------TKmLGr~D~CM~C~~pLTLd~~legk 104 (114)
T PF11023_consen 72 CPNCGKQ------TKMLGRVDACMHCKEPLTLDPSLEGK 104 (114)
T ss_pred CCCCCCh------HhhhchhhccCcCCCcCccCchhhcc
Confidence 3456663 23355667899999999877666554
No 121
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=82.85 E-value=1.2 Score=42.15 Aligned_cols=41 Identities=22% Similarity=0.544 Sum_probs=30.5
Q ss_pred CcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcc
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPT 154 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~ 154 (197)
..|.+|-..+.. .....+.|+|.=|.+|+.+|+..++.||.
T Consensus 780 ~~CtVC~~vi~G--~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG--VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeee--eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 368888655422 22344569999999999999999888876
No 122
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=82.13 E-value=0.83 Score=24.25 Aligned_cols=23 Identities=22% Similarity=0.665 Sum_probs=13.2
Q ss_pred cccccccccccCCceEEcCCCCCcc
Q 029206 113 DCAICLVDFMDGEKVRVLPKCNHGF 137 (197)
Q Consensus 113 ~C~ICl~~~~~~~~i~~lp~C~H~F 137 (197)
.|+-|..++.. ..+..|.|||.|
T Consensus 2 ~CP~C~~~V~~--~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPE--SAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchh--hcCcCCCCCCCC
Confidence 46777666532 334455577776
No 123
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.13 E-value=1.4 Score=36.50 Aligned_cols=49 Identities=16% Similarity=0.327 Sum_probs=37.9
Q ss_pred CcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCC
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQ 162 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~ 162 (197)
..|+|---+|...-....+..|||+|-..-+.+. ..++|++|.+.+.+.
T Consensus 112 fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~ 160 (293)
T KOG3113|consen 112 FICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQED 160 (293)
T ss_pred eecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCccccc
Confidence 4599888888766655566669999999998873 367899999987554
No 124
>PRK01844 hypothetical protein; Provisional
Probab=81.77 E-value=9.4 Score=25.41 Aligned_cols=30 Identities=13% Similarity=0.107 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029206 39 TNMVIILAALLCALICALGLNSIVRCALRC 68 (197)
Q Consensus 39 ~~~~iil~~~~~~~i~~l~i~~~~~~~~r~ 68 (197)
.+++++++++..++.+++++++..++..+.
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark~~~k~ 32 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARKYMMNY 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777666666666766666555443
No 125
>PF15050 SCIMP: SCIMP protein
Probab=80.65 E-value=4.7 Score=29.56 Aligned_cols=18 Identities=39% Similarity=0.506 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029206 40 NMVIILAALLCALICALG 57 (197)
Q Consensus 40 ~~~iil~~~~~~~i~~l~ 57 (197)
+|||||++-++++-+.++
T Consensus 7 nFWiiLAVaII~vS~~lg 24 (133)
T PF15050_consen 7 NFWIILAVAIILVSVVLG 24 (133)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 467777765444333333
No 126
>PF14979 TMEM52: Transmembrane 52
Probab=79.00 E-value=4.3 Score=30.78 Aligned_cols=31 Identities=26% Similarity=0.421 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029206 40 NMVIILAALLCALICALGLNSIVRCALRCSR 70 (197)
Q Consensus 40 ~~~iil~~~~~~~i~~l~i~~~~~~~~r~~r 70 (197)
++|+++.+++.++++-+....+..|++|+.+
T Consensus 21 yIwLill~~~llLLCG~ta~C~rfCClrk~~ 51 (154)
T PF14979_consen 21 YIWLILLIGFLLLLCGLTASCVRFCCLRKQA 51 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4555555555444444444444447766543
No 127
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=78.85 E-value=10 Score=27.60 Aligned_cols=31 Identities=19% Similarity=0.492 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhc
Q 029206 39 TNMVIILAALLCALICALGLNSI-VRCALRCS 69 (197)
Q Consensus 39 ~~~~iil~~~~~~~i~~l~i~~~-~~~~~r~~ 69 (197)
..+-..|..+.++.+..++...+ .||++|+.
T Consensus 84 ~aLp~VIGGLcaL~LaamGA~~LLrR~cRr~a 115 (126)
T PF03229_consen 84 FALPLVIGGLCALTLAAMGAGALLRRCCRRAA 115 (126)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555554444 45655543
No 128
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=78.41 E-value=1.1 Score=42.54 Aligned_cols=50 Identities=8% Similarity=0.206 Sum_probs=34.9
Q ss_pred CCCcccccccccccCC---ceEEcCCCCCcccHhHHHHHHh------CCCCCcccccCC
Q 029206 110 KATDCAICLVDFMDGE---KVRVLPKCNHGFHVRCIDTWLM------SHSSCPTCRRSL 159 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~---~i~~lp~C~H~FH~~Ci~~Wl~------~~~~CP~CR~~v 159 (197)
....|.+|..++..++ .+-.+..|+|-||..||..|.. .+-.|++|...|
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 3456888888887622 2222224999999999999993 234589998766
No 129
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.35 E-value=3.4 Score=29.99 Aligned_cols=46 Identities=26% Similarity=0.366 Sum_probs=32.7
Q ss_pred CCcccccccccccC----------CceEEcCCCCCcccHhHHHHHHhCCCCCcccc
Q 029206 111 ATDCAICLVDFMDG----------EKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCR 156 (197)
Q Consensus 111 ~~~C~ICl~~~~~~----------~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR 156 (197)
...|.-|+..|... ......++|++.|+.+|=.-+-..=.+||-|-
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 35699999988643 22355677999999999444434446799995
No 130
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.09 E-value=0.84 Score=43.28 Aligned_cols=43 Identities=21% Similarity=0.540 Sum_probs=31.7
Q ss_pred CCcccccccccccC----CceEEcCCCCCcccHhHHHHHHhCCCCCccc
Q 029206 111 ATDCAICLVDFMDG----EKVRVLPKCNHGFHVRCIDTWLMSHSSCPTC 155 (197)
Q Consensus 111 ~~~C~ICl~~~~~~----~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~C 155 (197)
+..|.-|++..... +.+.++- |+|+||+.|+..-..++. |-.|
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChh
Confidence 44699999886422 4566775 999999999988776655 5555
No 132
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.54 E-value=18 Score=23.95 Aligned_cols=29 Identities=14% Similarity=-0.033 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029206 39 TNMVIILAALLCALICALGLNSIVRCALR 67 (197)
Q Consensus 39 ~~~~iil~~~~~~~i~~l~i~~~~~~~~r 67 (197)
.+++++++++..++.+++++++..+...+
T Consensus 3 l~lail~ivl~ll~G~~~G~fiark~~~k 31 (71)
T COG3763 3 LWLAILLIVLALLAGLIGGFFIARKQMKK 31 (71)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555556665555555444
No 133
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=76.81 E-value=1.2 Score=39.61 Aligned_cols=35 Identities=23% Similarity=0.601 Sum_probs=28.2
Q ss_pred CCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHh
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLM 147 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~ 147 (197)
+++..|+||..-|+++ ++|| |+|..|..|-..-+.
T Consensus 2 eeelkc~vc~~f~~ep---iil~-c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREP---IILP-CSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCc---eEee-cccHHHHHHHHhhcc
Confidence 3466799999888665 5787 999999999887553
No 134
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=76.08 E-value=1.5 Score=36.46 Aligned_cols=49 Identities=24% Similarity=0.710 Sum_probs=35.6
Q ss_pred CcccccccccccCCceEEc---CCCCCcccHhHHHHHHhC---------CCCCcccccCCc
Q 029206 112 TDCAICLVDFMDGEKVRVL---PKCNHGFHVRCIDTWLMS---------HSSCPTCRRSLL 160 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~l---p~C~H~FH~~Ci~~Wl~~---------~~~CP~CR~~v~ 160 (197)
.+|.+|.+++.+.+..+.+ +.|+-.+|-.|+..-+.. ...||.|++.+.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 5899999999665554433 237788999999985522 245999998653
No 135
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.04 E-value=1.6 Score=39.11 Aligned_cols=37 Identities=24% Similarity=0.564 Sum_probs=29.8
Q ss_pred CCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhC
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS 148 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~ 148 (197)
....+|-||.+.+.. .+..+. |+|.|+..|+...+.+
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 445789999999866 455555 9999999999999854
No 136
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=75.79 E-value=1.9 Score=24.69 Aligned_cols=26 Identities=31% Similarity=0.621 Sum_probs=15.7
Q ss_pred cccccccccccCCc-------eEEcCCCCCccc
Q 029206 113 DCAICLVDFMDGEK-------VRVLPKCNHGFH 138 (197)
Q Consensus 113 ~C~ICl~~~~~~~~-------i~~lp~C~H~FH 138 (197)
+|+=|-..|+-++. ....+.|+|+|+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 57777777754332 234445888875
No 137
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=75.46 E-value=4.6 Score=34.39 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 029206 52 LICALGLNSIVRCA 65 (197)
Q Consensus 52 ~i~~l~i~~~~~~~ 65 (197)
+++.+++++++|++
T Consensus 269 VLIMvIIYLILRYR 282 (299)
T PF02009_consen 269 VLIMVIIYLILRYR 282 (299)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 138
>PRK00523 hypothetical protein; Provisional
Probab=75.36 E-value=18 Score=24.12 Aligned_cols=31 Identities=10% Similarity=-0.021 Sum_probs=18.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029206 38 DTNMVIILAALLCALICALGLNSIVRCALRC 68 (197)
Q Consensus 38 ~~~~~iil~~~~~~~i~~l~i~~~~~~~~r~ 68 (197)
...+++++++++.++.+++++++..++..+.
T Consensus 3 ~~~l~I~l~i~~li~G~~~Gffiark~~~k~ 33 (72)
T PRK00523 3 AIGLALGLGIPLLIVGGIIGYFVSKKMFKKQ 33 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777666666666666655555443
No 139
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=73.99 E-value=4.4 Score=24.86 Aligned_cols=42 Identities=24% Similarity=0.523 Sum_probs=18.0
Q ss_pred cccccccccccCCceEEcCCCCCcccHhHHHHHHhC---C--CCCcccccC
Q 029206 113 DCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS---H--SSCPTCRRS 158 (197)
Q Consensus 113 ~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~---~--~~CP~CR~~ 158 (197)
.|+|....++. -+|-.. |.|.-+-+ ++.|+.. . -.||+|.++
T Consensus 4 ~CPls~~~i~~--P~Rg~~-C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRI--PVRGKN-CKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SS--EEEETT---SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEe--CccCCc-CcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 47877766644 455554 98873211 4456632 2 249999864
No 140
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=73.98 E-value=5.5 Score=26.91 Aligned_cols=57 Identities=21% Similarity=0.399 Sum_probs=22.2
Q ss_pred CCCcccccccccc---cCCceEEcCCCCCcccHhHHHHHHhC-CCCCcccccCCcCCCCCC
Q 029206 110 KATDCAICLVDFM---DGEKVRVLPKCNHGFHVRCIDTWLMS-HSSCPTCRRSLLDQPTSS 166 (197)
Q Consensus 110 ~~~~C~ICl~~~~---~~~~i~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~v~~~~~~~ 166 (197)
....|.||-++.- +++.......|+--.++.|.+-=.+. ++.||-|+.++-...+.+
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp 68 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSP 68 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCC
Confidence 4567999988863 33333323336666889998876654 577999998886554443
No 141
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=73.31 E-value=4.6 Score=34.58 Aligned_cols=51 Identities=25% Similarity=0.611 Sum_probs=34.8
Q ss_pred CCCcccccccccc---------------cCC-ceEEcCCCCCcccHhHHHHHHhC---------CCCCcccccCCcC
Q 029206 110 KATDCAICLVDFM---------------DGE-KVRVLPKCNHGFHVRCIDTWLMS---------HSSCPTCRRSLLD 161 (197)
Q Consensus 110 ~~~~C~ICl~~~~---------------~~~-~i~~lp~C~H~FH~~Ci~~Wl~~---------~~~CP~CR~~v~~ 161 (197)
.+.+|++|+..=. .+- .-...| |||+--++-..-|-+. +..||.|-+.+.-
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 3678999997521 111 123445 9999999999999854 2459999877643
No 142
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=73.17 E-value=6 Score=30.04 Aligned_cols=32 Identities=28% Similarity=0.383 Sum_probs=14.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029206 35 ANFDTNMVIILAALLCALICALGLNSIVRCALRC 68 (197)
Q Consensus 35 ~~~~~~~~iil~~~~~~~i~~l~i~~~~~~~~r~ 68 (197)
.-|...|.+||+.+++.+ +++++++++|..|+
T Consensus 25 sffsthm~tILiaIvVli--iiiivli~lcssRK 56 (189)
T PF05568_consen 25 SFFSTHMYTILIAIVVLI--IIIIVLIYLCSSRK 56 (189)
T ss_pred cHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhh
Confidence 344555555554444332 22333444554443
No 143
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=72.81 E-value=1.6 Score=26.46 Aligned_cols=42 Identities=29% Similarity=0.671 Sum_probs=27.6
Q ss_pred ccccccccccCCceEEcCCCCCcccHhHHHHHHh------CCCCCcccc
Q 029206 114 CAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLM------SHSSCPTCR 156 (197)
Q Consensus 114 C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~------~~~~CP~CR 156 (197)
|.||...-..++.+ .-..|+..||..|+..=.. ..-.||.|+
T Consensus 2 C~vC~~~~~~~~~i-~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 2 CPVCGQSDDDGDMI-QCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp BTTTTSSCTTSSEE-EBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred CcCCCCcCCCCCeE-EcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 88998854444444 4445999999999865432 123488875
No 144
>PRK05978 hypothetical protein; Provisional
Probab=72.64 E-value=2.7 Score=32.05 Aligned_cols=31 Identities=16% Similarity=0.346 Sum_probs=25.1
Q ss_pred CcccHhHHHHHHhCCCCCcccccCCcCCCCCCcccc
Q 029206 135 HGFHVRCIDTWLMSHSSCPTCRRSLLDQPTSSDAAE 170 (197)
Q Consensus 135 H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~~~~~~~~~ 170 (197)
|.|+ .+++.+.+||.|-..+...+.+....+
T Consensus 43 ~LF~-----g~Lkv~~~C~~CG~~~~~~~a~DgpAy 73 (148)
T PRK05978 43 KLFR-----AFLKPVDHCAACGEDFTHHRADDLPAY 73 (148)
T ss_pred cccc-----cccccCCCccccCCccccCCccccCcc
Confidence 7786 788999999999999988777766543
No 145
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=72.09 E-value=5.9 Score=33.40 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 029206 45 LAALLCALICALGLNSIVRCALRCSRRF 72 (197)
Q Consensus 45 l~~~~~~~i~~l~i~~~~~~~~r~~rr~ 72 (197)
+++++.+++.++++.+.+|.++||...+
T Consensus 263 iaalvllil~vvliiLYiWlyrrRK~sw 290 (295)
T TIGR01478 263 IAALVLIILTVVLIILYIWLYRRRKKSW 290 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3334444444444444455444443333
No 146
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=71.23 E-value=2.2 Score=27.65 Aligned_cols=37 Identities=19% Similarity=0.368 Sum_probs=19.8
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHHH
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWL 146 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl 146 (197)
+...|.+|...|.--..-.-...||++|+.+|.....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 3567999999996655445555699999999986544
No 147
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=70.90 E-value=4.7 Score=34.61 Aligned_cols=46 Identities=20% Similarity=0.608 Sum_probs=31.8
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhC-CCCCccccc
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS-HSSCPTCRR 157 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~ 157 (197)
....|-.|.++....... ....|+|+||.+| |..+.. =..||-|..
T Consensus 329 ~~~~Cf~C~~~~~~~~~y-~C~~Ck~~FCldC-Dv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRY-RCESCKNVFCLDC-DVFIHESLHNCPGCEH 375 (378)
T ss_pred CCcceeeeccccCCCCcE-Echhccceeeccc-hHHHHhhhhcCCCcCC
Confidence 455699998776655444 4445999999999 443433 356999964
No 148
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=69.88 E-value=8.6 Score=27.27 Aligned_cols=25 Identities=16% Similarity=0.426 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 029206 44 ILAALLCALICALGLNSIVRCALRC 68 (197)
Q Consensus 44 il~~~~~~~i~~l~i~~~~~~~~r~ 68 (197)
++++++.++.+.++|.+.++|...+
T Consensus 20 LVGVv~~al~~SlLIalaaKC~~~~ 44 (102)
T PF15176_consen 20 LVGVVVTALVTSLLIALAAKCPVWY 44 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3334444444444444555665443
No 149
>PF15102 TMEM154: TMEM154 protein family
Probab=68.55 E-value=1.7 Score=33.02 Aligned_cols=8 Identities=38% Similarity=0.900 Sum_probs=5.2
Q ss_pred HHHHHHhC
Q 029206 141 CIDTWLMS 148 (197)
Q Consensus 141 Ci~~Wl~~ 148 (197)
=||+|+..
T Consensus 129 eldkwm~s 136 (146)
T PF15102_consen 129 ELDKWMNS 136 (146)
T ss_pred HHHhHHHh
Confidence 37888743
No 150
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=68.09 E-value=4.1 Score=34.83 Aligned_cols=43 Identities=19% Similarity=0.335 Sum_probs=29.5
Q ss_pred CcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC---CCCccc
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH---SSCPTC 155 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~---~~CP~C 155 (197)
..|++=-+.-.+...-.++. |||+.-++-++.--+.. -.||.|
T Consensus 337 FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 337 FICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred eeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 45777555544445556776 99999999999943332 239999
No 151
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=67.94 E-value=5.5 Score=27.87 Aligned_cols=30 Identities=13% Similarity=0.051 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029206 39 TNMVIILAALLCALICALGLNSIVRCALRC 68 (197)
Q Consensus 39 ~~~~iil~~~~~~~i~~l~i~~~~~~~~r~ 68 (197)
..+|-.++.-..++++++++.+++.|+.|+
T Consensus 39 ~ayWpyLA~GGG~iLilIii~Lv~CC~~K~ 68 (98)
T PF07204_consen 39 VAYWPYLAAGGGLILILIIIALVCCCRAKH 68 (98)
T ss_pred HhhhHHhhccchhhhHHHHHHHHHHhhhhh
Confidence 346777776666666666666666666554
No 152
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=67.64 E-value=18 Score=24.75 Aligned_cols=17 Identities=29% Similarity=0.286 Sum_probs=7.6
Q ss_pred cCCCCCCCCchHHHHHH
Q 029206 29 STVSNEANFDTNMVIIL 45 (197)
Q Consensus 29 ~~~~~~~~~~~~~~iil 45 (197)
..+.+..+-+.+|.|++
T Consensus 16 ~~~~~~l~pn~lMtILi 32 (85)
T PF10717_consen 16 NNNLNGLNPNTLMTILI 32 (85)
T ss_pred cccccccChhHHHHHHH
Confidence 34455545444444333
No 153
>PTZ00370 STEVOR; Provisional
Probab=67.03 E-value=6.4 Score=33.24 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 029206 46 AALLCALICALGLNSIVRCALRCS 69 (197)
Q Consensus 46 ~~~~~~~i~~l~i~~~~~~~~r~~ 69 (197)
++++.+++.++++.+.+|.++||.
T Consensus 260 aalvllil~vvliilYiwlyrrRK 283 (296)
T PTZ00370 260 AALVLLILAVVLIILYIWLYRRRK 283 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444444444445444443
No 154
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.75 E-value=3.4 Score=36.42 Aligned_cols=44 Identities=23% Similarity=0.504 Sum_probs=32.9
Q ss_pred CCccccccccccc--CCceEEcCCCCCcccHhHHHHHHhCCCCCccc
Q 029206 111 ATDCAICLVDFMD--GEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTC 155 (197)
Q Consensus 111 ~~~C~ICl~~~~~--~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~C 155 (197)
-.+|+.|.-.++- +=...... |+|.|+..|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 4578888766543 33445666 99999999999998888878655
No 155
>PLN02189 cellulose synthase
Probab=65.77 E-value=9.6 Score=37.70 Aligned_cols=51 Identities=20% Similarity=0.448 Sum_probs=36.0
Q ss_pred CCCcccccccccc---cCCceEEcCCCCCcccHhHHHHHHh-CCCCCcccccCCc
Q 029206 110 KATDCAICLVDFM---DGEKVRVLPKCNHGFHVRCIDTWLM-SHSSCPTCRRSLL 160 (197)
Q Consensus 110 ~~~~C~ICl~~~~---~~~~i~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~v~ 160 (197)
....|.||-++.. +++.-.....|+--.|+.|.+-=.+ .++.||-|++.+-
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3457999999974 3444445555777799999954333 2567999999885
No 156
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=65.52 E-value=3.5 Score=33.25 Aligned_cols=43 Identities=33% Similarity=0.844 Sum_probs=32.4
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccc
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCR 156 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR 156 (197)
-..|.+|.+-.-.+ ++.- .|+-.+|..|+..++.+...||.|.
T Consensus 181 lk~Cn~Ch~LvIqg--~rCg-~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG--IRCG-SCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHHhHhHHHhhee--eccC-cccchhhhHHHHHHhcccCcCCchh
Confidence 35699997654222 3333 3778899999999999988999993
No 157
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=64.89 E-value=6.8 Score=27.11 Aligned_cols=6 Identities=17% Similarity=0.595 Sum_probs=2.4
Q ss_pred HHHHhh
Q 029206 62 VRCALR 67 (197)
Q Consensus 62 ~~~~~r 67 (197)
..|+.+
T Consensus 52 fvCC~k 57 (94)
T PF05393_consen 52 FVCCKK 57 (94)
T ss_pred HHHHHH
Confidence 344433
No 158
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=64.51 E-value=4.2 Score=26.58 Aligned_cols=11 Identities=27% Similarity=0.951 Sum_probs=8.3
Q ss_pred ccHhHHHHHHh
Q 029206 137 FHVRCIDTWLM 147 (197)
Q Consensus 137 FH~~Ci~~Wl~ 147 (197)
||+.||.+|+.
T Consensus 12 FCRNCLskWy~ 22 (68)
T PF06844_consen 12 FCRNCLSKWYR 22 (68)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999994
No 159
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=64.42 E-value=4.6 Score=28.62 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=8.1
Q ss_pred ccccCCccccccC
Q 029206 3 TLNHRPHRLLLDT 15 (197)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (197)
.|.++|=.|-+.+
T Consensus 13 ~V~yIPLKLal~d 25 (101)
T PF06024_consen 13 KVDYIPLKLALND 25 (101)
T ss_pred cccceeeeeeccC
Confidence 4667776665554
No 160
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=62.87 E-value=4.4 Score=23.08 Aligned_cols=26 Identities=23% Similarity=0.523 Sum_probs=15.7
Q ss_pred cccccccccccCCc-------eEEcCCCCCccc
Q 029206 113 DCAICLVDFMDGEK-------VRVLPKCNHGFH 138 (197)
Q Consensus 113 ~C~ICl~~~~~~~~-------i~~lp~C~H~FH 138 (197)
+|+=|...|+-++. ....+.|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 57778777764432 123345888875
No 161
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=62.82 E-value=2.4 Score=37.22 Aligned_cols=27 Identities=30% Similarity=0.710 Sum_probs=0.0
Q ss_pred EEcCCCCCcccHhHHHHHHh------CCCCCcccccC
Q 029206 128 RVLPKCNHGFHVRCIDTWLM------SHSSCPTCRRS 158 (197)
Q Consensus 128 ~~lp~C~H~FH~~Ci~~Wl~------~~~~CP~CR~~ 158 (197)
.-+. |||++- ...|-. ..++||+||..
T Consensus 305 VYl~-CGHVhG---~h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 305 VYLN-CGHVHG---YHNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -------------------------------------
T ss_pred eecc-ccceee---ecccccccccccccccCCCcccc
Confidence 3444 999876 446753 24579999873
No 162
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=62.31 E-value=6.7 Score=24.15 Aligned_cols=36 Identities=17% Similarity=0.347 Sum_probs=25.2
Q ss_pred CcccccccccccCCceEEcCCCCCcccHhHHHHHHh
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLM 147 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~ 147 (197)
..|.+|-..|.....-.....||++|+..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 468899888765443333445999999999876543
No 163
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=61.64 E-value=7.9 Score=20.82 Aligned_cols=29 Identities=17% Similarity=0.414 Sum_probs=10.9
Q ss_pred cccccccccccCCceEEcCCCCCcccHhHH
Q 029206 113 DCAICLVDFMDGEKVRVLPKCNHGFHVRCI 142 (197)
Q Consensus 113 ~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci 142 (197)
.|.+|-.+... ........|+-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 48888877655 345555569999999985
No 164
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=60.73 E-value=13 Score=26.65 Aligned_cols=17 Identities=24% Similarity=0.297 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029206 44 ILAALLCALICALGLNS 60 (197)
Q Consensus 44 il~~~~~~~i~~l~i~~ 60 (197)
+++++..++++.+++.+
T Consensus 3 Ll~il~llLll~l~asl 19 (107)
T PF15330_consen 3 LLGILALLLLLSLAASL 19 (107)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444343333333
No 165
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=59.48 E-value=11 Score=26.71 Aligned_cols=9 Identities=22% Similarity=0.527 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 029206 41 MVIILAALL 49 (197)
Q Consensus 41 ~~iil~~~~ 49 (197)
+++.++.++
T Consensus 64 ili~lls~v 72 (101)
T PF06024_consen 64 ILISLLSFV 72 (101)
T ss_pred hHHHHHHHH
Confidence 333333333
No 166
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=59.17 E-value=5.9 Score=37.04 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=16.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029206 38 DTNMVIILAALLCALICALGLNSIVRC 64 (197)
Q Consensus 38 ~~~~~iil~~~~~~~i~~l~i~~~~~~ 64 (197)
+.++|||+++++.++++++++.++.++
T Consensus 266 ~~NlWII~gVlvPv~vV~~Iiiil~~~ 292 (684)
T PF12877_consen 266 PNNLWIIAGVLVPVLVVLLIIIILYWK 292 (684)
T ss_pred CCCeEEEehHhHHHHHHHHHHHHHHHH
Confidence 446788887776666555554444443
No 167
>PLN02436 cellulose synthase A
Probab=57.91 E-value=15 Score=36.48 Aligned_cols=51 Identities=22% Similarity=0.517 Sum_probs=35.6
Q ss_pred CCCccccccccc---ccCCceEEcCCCCCcccHhHHHHHHhC-CCCCcccccCCc
Q 029206 110 KATDCAICLVDF---MDGEKVRVLPKCNHGFHVRCIDTWLMS-HSSCPTCRRSLL 160 (197)
Q Consensus 110 ~~~~C~ICl~~~---~~~~~i~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~v~ 160 (197)
....|.||-++. .+++.-.....|+--.|+.|.+-=.+. ++.||-|++.+-
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 345799999986 344544444457777999999543332 567999999875
No 168
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=57.73 E-value=3.4 Score=36.36 Aligned_cols=49 Identities=22% Similarity=0.458 Sum_probs=0.0
Q ss_pred CCcccccccccc-------------c---CCceEEcCCCCCcccHhHHHHHHhC---------CCCCcccccCCc
Q 029206 111 ATDCAICLVDFM-------------D---GEKVRVLPKCNHGFHVRCIDTWLMS---------HSSCPTCRRSLL 160 (197)
Q Consensus 111 ~~~C~ICl~~~~-------------~---~~~i~~lp~C~H~FH~~Ci~~Wl~~---------~~~CP~CR~~v~ 160 (197)
..+|++|+..-. . .-.....| |||+--.+...-|-+. +..||.|-..+-
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 678999996521 1 11234456 9999999999999843 245999988774
No 169
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=57.08 E-value=15 Score=31.94 Aligned_cols=9 Identities=22% Similarity=0.246 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 029206 56 LGLNSIVRC 64 (197)
Q Consensus 56 l~i~~~~~~ 64 (197)
+++++++||
T Consensus 327 vIIYLILRY 335 (353)
T TIGR01477 327 VIIYLILRY 335 (353)
T ss_pred HHHHHHHHh
Confidence 333444443
No 170
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=56.43 E-value=31 Score=33.18 Aligned_cols=46 Identities=24% Similarity=0.552 Sum_probs=28.7
Q ss_pred CCcccccccccc---------cCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCc
Q 029206 111 ATDCAICLVDFM---------DGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 111 ~~~C~ICl~~~~---------~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
+..|+=|-..|- .+...-+.|.|+|..|..=|.. ...||+|...+.
T Consensus 1131 ~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1131 DLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSMES 1185 (1189)
T ss_pred CCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChhh
Confidence 455766666652 1112334555999988766543 578999987653
No 171
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=55.92 E-value=9.1 Score=23.68 Aligned_cols=23 Identities=30% Similarity=0.735 Sum_probs=14.7
Q ss_pred CCCCcccHhHHHHHHhCCCCCccc
Q 029206 132 KCNHGFHVRCIDTWLMSHSSCPTC 155 (197)
Q Consensus 132 ~C~H~FH~~Ci~~Wl~~~~~CP~C 155 (197)
.|||.|...=-+. ......||.|
T Consensus 33 ~Cgh~w~~~v~~R-~~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKASVNDR-TRRGKGCPYC 55 (55)
T ss_pred CCCCeeEccHhhh-ccCCCCCCCC
Confidence 4778776553333 3556779988
No 173
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=55.66 E-value=26 Score=33.80 Aligned_cols=7 Identities=29% Similarity=0.733 Sum_probs=3.4
Q ss_pred CCCCCCC
Q 029206 20 PPTNGSR 26 (197)
Q Consensus 20 ~p~~~~~ 26 (197)
|++.|..
T Consensus 254 P~~~G~~ 260 (807)
T PF10577_consen 254 PSSSGPV 260 (807)
T ss_pred ccccCcc
Confidence 4445553
No 174
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=55.64 E-value=13 Score=20.28 Aligned_cols=36 Identities=31% Similarity=0.613 Sum_probs=23.0
Q ss_pred ccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCC
Q 029206 114 CAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSL 159 (197)
Q Consensus 114 C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v 159 (197)
|..|-..+...+..... =+..||.+|+ .|..|+.++
T Consensus 2 C~~C~~~i~~~~~~~~~--~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLRA--LGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEEe--CCccccccCC--------CCcccCCcC
Confidence 77787777665333222 4678998884 567776655
No 175
>PHA03240 envelope glycoprotein M; Provisional
Probab=55.58 E-value=17 Score=29.54 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 029206 39 TNMVIILAALLCALICALGL 58 (197)
Q Consensus 39 ~~~~iil~~~~~~~i~~l~i 58 (197)
..+|+|++++++++++++.+
T Consensus 212 H~~WIiilIIiIiIIIL~cf 231 (258)
T PHA03240 212 HIAWIFIAIIIIIVIILFFF 231 (258)
T ss_pred hHhHHHHHHHHHHHHHHHHH
Confidence 45666666655544444333
No 176
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=55.16 E-value=2.2 Score=36.16 Aligned_cols=38 Identities=24% Similarity=0.541 Sum_probs=29.6
Q ss_pred CcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCC
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHS 150 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~ 150 (197)
..|.+|+++|..+.....+- |.-+||..|+-.|+....
T Consensus 215 rvC~~CF~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDRED-SLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred eecHHHHHHHhcccccchhh-cccccccccccccccccc
Confidence 48999999998655555554 666999999999986644
No 177
>PRK14762 membrane protein; Provisional
Probab=54.60 E-value=31 Score=18.06 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029206 40 NMVIILAALLCALICALGL 58 (197)
Q Consensus 40 ~~~iil~~~~~~~i~~l~i 58 (197)
..|++.++++..++.+.+.
T Consensus 4 ~lw~i~iifligllvvtgv 22 (27)
T PRK14762 4 ILWAVLIIFLIGLLVVTGV 22 (27)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666555554
No 178
>PTZ00046 rifin; Provisional
Probab=54.15 E-value=17 Score=31.74 Aligned_cols=9 Identities=22% Similarity=0.246 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 029206 56 LGLNSIVRC 64 (197)
Q Consensus 56 l~i~~~~~~ 64 (197)
+++++++||
T Consensus 332 vIIYLILRY 340 (358)
T PTZ00046 332 VIIYLILRY 340 (358)
T ss_pred HHHHHHHHh
Confidence 333344443
No 179
>PHA02657 hypothetical protein; Provisional
Probab=54.08 E-value=32 Score=23.71 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=25.6
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029206 29 STVSNEANFDTNMVIILAALLCALICALGLNSIVRC 64 (197)
Q Consensus 29 ~~~~~~~~~~~~~~iil~~~~~~~i~~l~i~~~~~~ 64 (197)
.+|-...+|...+++.+.++++.+++.+++.++-+.
T Consensus 16 ~~~~~~~~~~~imVitvfv~vI~il~flLLYLvkWS 51 (95)
T PHA02657 16 NYYYMKINFESILVFTIFIFVVCILIYLLIYLVDWS 51 (95)
T ss_pred ceEEEEecchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677889988888887777777766666555443
No 180
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=53.47 E-value=30 Score=29.78 Aligned_cols=49 Identities=24% Similarity=0.547 Sum_probs=33.5
Q ss_pred CcccccccccccCCc-eEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 112 TDCAICLVDFMDGEK-VRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~-i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
..|+||-+.....+. ..-.| |+|..|..|+..-...+.+||.||++...
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~-~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCP-CGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCccccccccccccc-ccccchhhhhhcccccCCCCCccCCcccc
Confidence 679999988744332 22333 77776777766655677889999966643
No 181
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=53.42 E-value=26 Score=22.14 Aligned_cols=45 Identities=27% Similarity=0.713 Sum_probs=31.1
Q ss_pred cccccccccccCC-ceEEcCCCC--CcccHhHHHHHHhCCCCCcccccCCcCC
Q 029206 113 DCAICLVDFMDGE-KVRVLPKCN--HGFHVRCIDTWLMSHSSCPTCRRSLLDQ 162 (197)
Q Consensus 113 ~C~ICl~~~~~~~-~i~~lp~C~--H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~ 162 (197)
.|--|-.++..+. ..++ |. ..|+.+|.+.-| +..||.|.-.++..
T Consensus 7 nCE~C~~dLp~~s~~A~I---CSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYI---CSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CccccCCCCCCCCCcceE---EeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 3666766665554 2322 66 459999999966 67899998777543
No 182
>PLN02195 cellulose synthase A
Probab=52.89 E-value=22 Score=35.11 Aligned_cols=52 Identities=19% Similarity=0.372 Sum_probs=36.0
Q ss_pred CCCcccccccccc---cCCceEEcCCCCCcccHhHHHHHHhC-CCCCcccccCCcC
Q 029206 110 KATDCAICLVDFM---DGEKVRVLPKCNHGFHVRCIDTWLMS-HSSCPTCRRSLLD 161 (197)
Q Consensus 110 ~~~~C~ICl~~~~---~~~~i~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~v~~ 161 (197)
....|.||-++.. +++.-.....|+--.|+.|.+==.+. ++.||-|++.+-+
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCcccc
Confidence 3457999998764 33444444458888999998543322 5679999999974
No 183
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=52.84 E-value=13 Score=24.17 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 029206 41 MVIILAALLCALICAL 56 (197)
Q Consensus 41 ~~iil~~~~~~~i~~l 56 (197)
||+++.+++++++++.
T Consensus 1 MWIiiSIvLai~lLI~ 16 (66)
T PF07438_consen 1 MWIIISIVLAIALLIS 16 (66)
T ss_pred ChhhHHHHHHHHHHHH
Confidence 5777777776655443
No 184
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=52.13 E-value=16 Score=27.91 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029206 42 VIILAALLCALICALGLN 59 (197)
Q Consensus 42 ~iil~~~~~~~i~~l~i~ 59 (197)
.+.+++++++++++.++.
T Consensus 11 ~i~igi~Ll~lLl~cgiG 28 (158)
T PF11770_consen 11 AISIGISLLLLLLLCGIG 28 (158)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 344444444444444443
No 185
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=51.96 E-value=6.4 Score=37.19 Aligned_cols=37 Identities=24% Similarity=0.564 Sum_probs=29.3
Q ss_pred CCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCc
Q 029206 124 GEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 124 ~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
+..+...|.|.-+||.+=++--..++..||.||.+.-
T Consensus 1041 d~~it~Cp~C~~~F~~eDFEl~vLqKGHCPFCrTS~d 1077 (1081)
T KOG1538|consen 1041 DASITMCPSCFQMFHSEDFELLVLQKGHCPFCRTSKD 1077 (1081)
T ss_pred cchhhhCchHHhhhccchhhHHHHhcCCCCccccccc
Confidence 3456666778899998888877788899999998763
No 186
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=51.34 E-value=22 Score=25.39 Aligned_cols=47 Identities=23% Similarity=0.504 Sum_probs=28.2
Q ss_pred CCCcccccccccccCCceEE-----cCCC---CCcccHhHHHHHHhCC---------CCCccccc
Q 029206 110 KATDCAICLVDFMDGEKVRV-----LPKC---NHGFHVRCIDTWLMSH---------SSCPTCRR 157 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~-----lp~C---~H~FH~~Ci~~Wl~~~---------~~CP~CR~ 157 (197)
.+..|..|...-.+ ..+.- .+.| .=.|+..||..++..+ -.||.||.
T Consensus 6 ~g~~CHqCrqKt~~-~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 6 NGKTCHQCRQKTLD-FKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCCchhhcCCCCC-CceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 34567777654221 12211 1336 5679999999888432 24999986
No 187
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=50.95 E-value=14 Score=29.83 Aligned_cols=31 Identities=13% Similarity=0.343 Sum_probs=14.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029206 35 ANFDTNMVIILAALLCALICALGLNSIVRCA 65 (197)
Q Consensus 35 ~~~~~~~~iil~~~~~~~i~~l~i~~~~~~~ 65 (197)
..+-.+++-++++.+.+++++++..++.+|+
T Consensus 34 ~d~~~I~iaiVAG~~tVILVI~i~v~vR~CR 64 (221)
T PF08374_consen 34 KDYVKIMIAIVAGIMTVILVIFIVVLVRYCR 64 (221)
T ss_pred ccceeeeeeeecchhhhHHHHHHHHHHHHHh
Confidence 3444445555555555544444443333344
No 188
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=50.81 E-value=14 Score=22.56 Aligned_cols=39 Identities=28% Similarity=0.537 Sum_probs=25.3
Q ss_pred ccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCC
Q 029206 114 CAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQ 162 (197)
Q Consensus 114 C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~ 162 (197)
|+-|-..+...+.+. .. -+..||.+|+ +|-.|++++...
T Consensus 1 C~~C~~~I~~~~~~~-~~-~~~~~H~~Cf--------~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIVI-KA-MGKFWHPECF--------KCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEEE-EE-TTEEEETTTS--------BETTTTCBTTTS
T ss_pred CCCCCCCccCcEEEE-Ee-CCcEEEcccc--------ccCCCCCccCCC
Confidence 666777776554442 22 6678888873 688888777543
No 189
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=50.22 E-value=9 Score=21.21 Aligned_cols=19 Identities=21% Similarity=0.518 Sum_probs=11.7
Q ss_pred CCCcccHhHHHHHHhCCCCCccccc
Q 029206 133 CNHGFHVRCIDTWLMSHSSCPTCRR 157 (197)
Q Consensus 133 C~H~FH~~Ci~~Wl~~~~~CP~CR~ 157 (197)
|||++-..- ....||+|..
T Consensus 7 CGy~y~~~~------~~~~CP~Cg~ 25 (33)
T cd00350 7 CGYIYDGEE------APWVCPVCGA 25 (33)
T ss_pred CCCEECCCc------CCCcCcCCCC
Confidence 666655432 3447999965
No 190
>PRK02935 hypothetical protein; Provisional
Probab=50.04 E-value=94 Score=22.32 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=16.9
Q ss_pred HhCCCCCcccccCCcCCCCCCcc
Q 029206 146 LMSHSSCPTCRRSLLDQPTSSDA 168 (197)
Q Consensus 146 l~~~~~CP~CR~~v~~~~~~~~~ 168 (197)
+.+-..|..|+.++.-++...++
T Consensus 83 LGrvD~CM~C~~PLTLd~~legk 105 (110)
T PRK02935 83 LGRVDACMHCNQPLTLDRSLEGK 105 (110)
T ss_pred ccceeecCcCCCcCCcCcccccc
Confidence 45566799999999776666554
No 191
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=49.86 E-value=23 Score=35.28 Aligned_cols=51 Identities=24% Similarity=0.443 Sum_probs=34.8
Q ss_pred CCCcccccccccc---cCCceEEcCCCCCcccHhHHHHHHh-CCCCCcccccCCc
Q 029206 110 KATDCAICLVDFM---DGEKVRVLPKCNHGFHVRCIDTWLM-SHSSCPTCRRSLL 160 (197)
Q Consensus 110 ~~~~C~ICl~~~~---~~~~i~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~v~ 160 (197)
....|-||-++.. +++.-.....|+--.|+.|.+==.+ -++.||-|++.+-
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 3457999998863 3444444444666699999853332 3567999999885
No 192
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=49.72 E-value=83 Score=22.37 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=26.4
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029206 34 EANFDTNMVIILAALLCALICALGLNSIVRCALR 67 (197)
Q Consensus 34 ~~~~~~~~~iil~~~~~~~i~~l~i~~~~~~~~r 67 (197)
+.++..++.+++++++..+++++.+-+-+++..+
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~ 47 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAKCPVWYKYL 47 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4578888999999988888888887766655544
No 193
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=47.90 E-value=31 Score=29.45 Aligned_cols=29 Identities=31% Similarity=0.466 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029206 41 MVIILAALLCALICALGLNSIVRCALRCSR 70 (197)
Q Consensus 41 ~~iil~~~~~~~i~~l~i~~~~~~~~r~~r 70 (197)
.-.|++.++.++++++ +.+++.+.+|+||
T Consensus 255 ~t~I~aSiiaIliIVL-IMvIIYLILRYRR 283 (299)
T PF02009_consen 255 TTAIIASIIAILIIVL-IMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3344444444444444 4444555566544
No 194
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.47 E-value=11 Score=31.28 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=26.7
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHh
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLM 147 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~ 147 (197)
-+.|+.||.++.++ .+++ =||+|.++||-+++.
T Consensus 43 FdcCsLtLqPc~dP---vit~-~GylfdrEaILe~il 75 (303)
T KOG3039|consen 43 FDCCSLTLQPCRDP---VITP-DGYLFDREAILEYIL 75 (303)
T ss_pred cceeeeecccccCC---ccCC-CCeeeeHHHHHHHHH
Confidence 45699999998776 3455 789999999999883
No 195
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=47.07 E-value=6.4 Score=29.98 Aligned_cols=30 Identities=17% Similarity=0.090 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 029206 45 LAALLCALICALGLNSIVRCALRCSRRFAF 74 (197)
Q Consensus 45 l~~~~~~~i~~l~i~~~~~~~~r~~rr~~~ 74 (197)
+++.++++++++++++-+.|...|.+|...
T Consensus 10 v~i~igi~Ll~lLl~cgiGcvwhwkhr~~~ 39 (158)
T PF11770_consen 10 VAISIGISLLLLLLLCGIGCVWHWKHRDST 39 (158)
T ss_pred HHHHHHHHHHHHHHHHhcceEEEeeccCcc
Confidence 345555555556665666676666555433
No 196
>PHA02849 putative transmembrane protein; Provisional
Probab=46.75 E-value=57 Score=22.04 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=11.2
Q ss_pred CCCCCCchHHHHHHHHHHHH
Q 029206 32 SNEANFDTNMVIILAALLCA 51 (197)
Q Consensus 32 ~~~~~~~~~~~iil~~~~~~ 51 (197)
.++.+|+..++.++.+++++
T Consensus 7 ~~d~~f~~g~v~vi~v~v~v 26 (82)
T PHA02849 7 LNDIEFDAGAVTVILVFVLV 26 (82)
T ss_pred ccccccccchHHHHHHHHHH
Confidence 35566766666555544443
No 197
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=46.62 E-value=12 Score=31.03 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=31.3
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC--CCCccccc
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH--SSCPTCRR 157 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~ 157 (197)
...|+|=...+.++- +..+|||+|-++=|...+... ..||+=-.
T Consensus 176 s~rdPis~~~I~nPv---iSkkC~HvydrDsI~~~l~~~~~i~CPv~gC 221 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPV---ISKKCGHVYDRDSIMQILCDEITIRCPVLGC 221 (262)
T ss_pred cccCchhhhhhhchh---hhcCcCcchhhhhHHHHhccCceeecccccC
Confidence 356888777776552 333699999999999988653 44887433
No 198
>PF06170 DUF983: Protein of unknown function (DUF983); InterPro: IPR009325 This family consists of several bacterial proteins of unknown function.
Probab=46.57 E-value=7.5 Score=26.78 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=21.9
Q ss_pred HHHHhCCCCCcccccCCcCCCCCCcccc
Q 029206 143 DTWLMSHSSCPTCRRSLLDQPTSSDAAE 170 (197)
Q Consensus 143 ~~Wl~~~~~CP~CR~~v~~~~~~~~~~~ 170 (197)
+.+|+....|+.|..++...+.+++...
T Consensus 2 ~g~Lk~~~~C~~CG~d~~~~~adDgPA~ 29 (86)
T PF06170_consen 2 RGYLKVAPRCPHCGLDYSHARADDGPAY 29 (86)
T ss_pred CccccCCCcccccCCccccCCcCccchh
Confidence 3467888999999999988887766543
No 199
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=46.48 E-value=12 Score=27.16 Aligned_cols=48 Identities=23% Similarity=0.357 Sum_probs=28.3
Q ss_pred CCCCcccccccccccCC-ceEEcCCCCCcccHhHHHHHHhCCC--CCccccc
Q 029206 109 IKATDCAICLVDFMDGE-KVRVLPKCNHGFHVRCIDTWLMSHS--SCPTCRR 157 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~-~i~~lp~C~H~FH~~Ci~~Wl~~~~--~CP~CR~ 157 (197)
.++..|.+|..+|..-. .-.....|+|.+|..|-.. ..... .|-+|..
T Consensus 52 ~~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 52 YGERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp HCCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred cCCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 35678999998874322 2244556999999999544 11112 2877754
No 200
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=46.20 E-value=18 Score=28.98 Aligned_cols=18 Identities=33% Similarity=0.327 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 029206 52 LICALGLNSIVRCALRCS 69 (197)
Q Consensus 52 ~i~~l~i~~~~~~~~r~~ 69 (197)
++++++++..+.|+.||.
T Consensus 112 lLla~~~~~~Y~~~~Rrs 129 (202)
T PF06365_consen 112 LLLAILLGAGYCCHQRRS 129 (202)
T ss_pred HHHHHHHHHHHHhhhhcc
Confidence 444444444455555443
No 201
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=46.04 E-value=50 Score=20.73 Aligned_cols=13 Identities=23% Similarity=0.370 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 029206 40 NMVIILAALLCAL 52 (197)
Q Consensus 40 ~~~iil~~~~~~~ 52 (197)
+.|+|++++++++
T Consensus 4 ~~wlIIviVlgvI 16 (55)
T PF11446_consen 4 NPWLIIVIVLGVI 16 (55)
T ss_pred hhhHHHHHHHHHH
Confidence 3455554444433
No 202
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=45.84 E-value=6.5 Score=24.58 Aligned_cols=21 Identities=33% Similarity=0.740 Sum_probs=16.1
Q ss_pred CceEEcCCCCCcccHhHHHHH
Q 029206 125 EKVRVLPKCNHGFHVRCIDTW 145 (197)
Q Consensus 125 ~~i~~lp~C~H~FH~~Ci~~W 145 (197)
......+.|+|.|+..|...|
T Consensus 38 ~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 38 CNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCeeECCCCCCeECCCCCCcC
Confidence 444556559999999998887
No 203
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=45.78 E-value=17 Score=23.59 Aligned_cols=33 Identities=12% Similarity=0.236 Sum_probs=21.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029206 35 ANFDTNMVIILAALLCALICALGLNSIVRCALR 67 (197)
Q Consensus 35 ~~~~~~~~iil~~~~~~~i~~l~i~~~~~~~~r 67 (197)
..|++-++++|.+...+++++++-+.++.++.+
T Consensus 8 KGlnPGlIVLlvV~g~ll~flvGnyvlY~Yaqk 40 (69)
T PF04689_consen 8 KGLNPGLIVLLVVAGLLLVFLVGNYVLYVYAQK 40 (69)
T ss_pred cCCCCCeEEeehHHHHHHHHHHHHHHHHHHHhh
Confidence 456677777777776666666666666665543
No 204
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=45.72 E-value=27 Score=22.94 Aligned_cols=30 Identities=3% Similarity=-0.020 Sum_probs=15.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029206 38 DTNMVIILAALLCALICALGLNSIVRCALR 67 (197)
Q Consensus 38 ~~~~~iil~~~~~~~i~~l~i~~~~~~~~r 67 (197)
.+.=|..++++..+++.++.+..-+.+..|
T Consensus 29 sp~qW~aIGvi~gi~~~~lt~ltN~YFK~k 58 (68)
T PF04971_consen 29 SPSQWAAIGVIGGIFFGLLTYLTNLYFKIK 58 (68)
T ss_pred CcccchhHHHHHHHHHHHHHHHhHhhhhhh
Confidence 333455556666555555554444444333
No 205
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=45.42 E-value=6.6 Score=24.27 Aligned_cols=11 Identities=45% Similarity=1.096 Sum_probs=5.6
Q ss_pred CCcccccCCcC
Q 029206 151 SCPTCRRSLLD 161 (197)
Q Consensus 151 ~CP~CR~~v~~ 161 (197)
.||+|.+++.+
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 79999888754
No 206
>PHA02650 hypothetical protein; Provisional
Probab=45.33 E-value=61 Score=21.94 Aligned_cols=6 Identities=50% Similarity=0.174 Sum_probs=2.1
Q ss_pred HHHHHH
Q 029206 53 ICALGL 58 (197)
Q Consensus 53 i~~l~i 58 (197)
++++++
T Consensus 61 i~~l~~ 66 (81)
T PHA02650 61 IVALFS 66 (81)
T ss_pred HHHHHH
Confidence 333333
No 207
>PF15050 SCIMP: SCIMP protein
Probab=45.33 E-value=31 Score=25.35 Aligned_cols=22 Identities=18% Similarity=0.081 Sum_probs=11.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHH
Q 029206 36 NFDTNMVIILAALLCALICALG 57 (197)
Q Consensus 36 ~~~~~~~iil~~~~~~~i~~l~ 57 (197)
+|-..+.+.++++..++.++++
T Consensus 7 nFWiiLAVaII~vS~~lglIly 28 (133)
T PF15050_consen 7 NFWIILAVAIILVSVVLGLILY 28 (133)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 5666666664444444444443
No 208
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=45.27 E-value=16 Score=31.88 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=23.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029206 35 ANFDTNMVIILAALLCALICALGLNSIVRCALRCSR 70 (197)
Q Consensus 35 ~~~~~~~~iil~~~~~~~i~~l~i~~~~~~~~r~~r 70 (197)
..|+...+.++++-+++-++++++.-++.|.+|+++
T Consensus 313 d~~S~lvi~i~~vgLG~P~l~li~Ggl~v~~~r~r~ 348 (350)
T PF15065_consen 313 DSFSPLVIMIMAVGLGVPLLLLILGGLYVCLRRRRK 348 (350)
T ss_pred cchhHHHHHHHHHHhhHHHHHHHHhhheEEEecccc
Confidence 467777777777766666666666666666555443
No 209
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=45.13 E-value=2.1 Score=28.40 Aligned_cols=39 Identities=21% Similarity=0.478 Sum_probs=19.4
Q ss_pred CcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCC
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSL 159 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v 159 (197)
..|+.|-.+++... +|.++..|-.. +.....||-|..++
T Consensus 2 ~~CP~C~~~L~~~~--------~~~~C~~C~~~-~~~~a~CPdC~~~L 40 (70)
T PF07191_consen 2 NTCPKCQQELEWQG--------GHYHCEACQKD-YKKEAFCPDCGQPL 40 (70)
T ss_dssp -B-SSS-SBEEEET--------TEEEETTT--E-EEEEEE-TTT-SB-
T ss_pred CcCCCCCCccEEeC--------CEEECcccccc-ceecccCCCcccHH
Confidence 35888876654432 45555566554 45566789988776
No 210
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=44.88 E-value=39 Score=29.85 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=17.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029206 36 NFDTNMVIILAALLCALICALGLNSIVRCALR 67 (197)
Q Consensus 36 ~~~~~~~iil~~~~~~~i~~l~i~~~~~~~~r 67 (197)
+|...+++.+++-+.++++++++..++.|+.|
T Consensus 280 ~y~~d~~vtl~iPl~i~llL~llLs~Imc~rR 311 (386)
T PF05510_consen 280 DYFPDFLVTLAIPLIIALLLLLLLSYIMCCRR 311 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHheech
Confidence 45555655555555555555555555555544
No 211
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=44.28 E-value=82 Score=23.35 Aligned_cols=12 Identities=17% Similarity=0.105 Sum_probs=2.8
Q ss_pred cCCCCCCCCchH
Q 029206 29 STVSNEANFDTN 40 (197)
Q Consensus 29 ~~~~~~~~~~~~ 40 (197)
+...++.+...+
T Consensus 34 ~~~s~~~~~~~l 45 (129)
T PF02060_consen 34 SPSSSDDDNEYL 45 (129)
T ss_dssp -S--TT-SSTT-
T ss_pred CCCCCCCCceee
Confidence 333444443333
No 212
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.14 E-value=8.2 Score=32.80 Aligned_cols=49 Identities=22% Similarity=0.527 Sum_probs=38.5
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSL 159 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v 159 (197)
......|-||...+.-.+.. . .|.|.|+..|...|......||.|+...
T Consensus 102 ~~~~~~~~~~~g~l~vpt~~--q-g~w~qf~~~~p~~~~~~~~~~~d~~~~~ 150 (324)
T KOG0824|consen 102 QQDHDICYICYGKLTVPTRI--Q-GCWHQFCYVCPKSNFAMGNDCPDCRGKI 150 (324)
T ss_pred cCCccceeeeeeeEEecccc--c-CceeeeeecCCchhhhhhhccchhhcCc
Confidence 34455699998888665533 2 3999999999999999999999998744
No 213
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=42.63 E-value=29 Score=22.20 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=24.8
Q ss_pred CCCccccccccccc--CCceEEcCCCCCcccHhHHHH
Q 029206 110 KATDCAICLVDFMD--GEKVRVLPKCNHGFHVRCIDT 144 (197)
Q Consensus 110 ~~~~C~ICl~~~~~--~~~i~~lp~C~H~FH~~Ci~~ 144 (197)
....|+.|-...+. .......+.||+.+|.+---.
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~naA 63 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNAA 63 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCEECcHHHHH
Confidence 45679999887766 455666667888888875433
No 214
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=42.40 E-value=24 Score=26.60 Aligned_cols=16 Identities=31% Similarity=0.740 Sum_probs=12.4
Q ss_pred CCCcccccCCcCCCCC
Q 029206 150 SSCPTCRRSLLDQPTS 165 (197)
Q Consensus 150 ~~CP~CR~~v~~~~~~ 165 (197)
-.||.|...+...+..
T Consensus 124 f~Cp~Cg~~l~~~dn~ 139 (147)
T smart00531 124 FTCPRCGEELEEDDNS 139 (147)
T ss_pred EECCCCCCEEEEcCch
Confidence 5699999998776554
No 215
>PLN02400 cellulose synthase
Probab=42.32 E-value=27 Score=34.88 Aligned_cols=51 Identities=20% Similarity=0.414 Sum_probs=33.7
Q ss_pred CCCcccccccccc---cCCceEEcCCCCCcccHhHHHHHHh-CCCCCcccccCCc
Q 029206 110 KATDCAICLVDFM---DGEKVRVLPKCNHGFHVRCIDTWLM-SHSSCPTCRRSLL 160 (197)
Q Consensus 110 ~~~~C~ICl~~~~---~~~~i~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~v~ 160 (197)
....|-||-++.. +++.-.....|+--.|+.|.+==.+ -++.||-|++.+-
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 3457999998863 3443333334666699999843222 2567999999885
No 216
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=42.16 E-value=30 Score=23.98 Aligned_cols=38 Identities=18% Similarity=0.453 Sum_probs=30.2
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
-..|.-|-..+.--| ..| |-.|+..+..|..|++++..
T Consensus 33 rS~C~~C~~~L~~~~---lIP----------i~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 33 RSHCPHCGHPLSWWD---LIP----------ILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CCcCcCCCCcCcccc---cch----------HHHHHHhCCCCcccCCCCCh
Confidence 467999987776554 446 88999999999999998853
No 217
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=41.56 E-value=15 Score=25.23 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=22.3
Q ss_pred CCCCCCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 029206 19 TPPTNGSRTRSTVSNEANFDTNMVIILAALLCALICALGLNSI 61 (197)
Q Consensus 19 ~~p~~~~~~~~~~~~~~~~~~~~~iil~~~~~~~i~~l~i~~~ 61 (197)
.++.++.|-.+-.+.+-.|-..+++++..++..+++++++.++
T Consensus 14 ~si~d~DQL~qlVsrN~sfirdFvLVic~~lVfVii~lFi~ll 56 (84)
T PF06143_consen 14 NSILDYDQLEQLVSRNRSFIRDFVLVICCFLVFVIIVLFILLL 56 (84)
T ss_pred CCCCcHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554444444555566666666655555444444444444
No 218
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=41.46 E-value=27 Score=29.59 Aligned_cols=6 Identities=17% Similarity=0.030 Sum_probs=2.3
Q ss_pred ccCCCC
Q 029206 13 LDTEPS 18 (197)
Q Consensus 13 ~~~~~~ 18 (197)
+.+.+.
T Consensus 243 ~~~lqv 248 (306)
T PF01299_consen 243 LSDLQV 248 (306)
T ss_pred EeEEEE
Confidence 333344
No 219
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=41.41 E-value=25 Score=24.77 Aligned_cols=32 Identities=25% Similarity=0.593 Sum_probs=21.2
Q ss_pred CCCcccccccccccCCceEEcCC--CCCcccHhHHHH
Q 029206 110 KATDCAICLVDFMDGEKVRVLPK--CNHGFHVRCIDT 144 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~--C~H~FH~~Ci~~ 144 (197)
....|.||... .+..+ .... |...||..|...
T Consensus 54 ~~~~C~iC~~~--~G~~i-~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKS--GGACI-KCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCC--CceeE-EcCCCCCCcCCCHHHHHH
Confidence 35679999866 23222 2222 888999999866
No 220
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=40.94 E-value=15 Score=23.55 Aligned_cols=14 Identities=21% Similarity=0.859 Sum_probs=10.7
Q ss_pred CCCCcccccCCcCC
Q 029206 149 HSSCPTCRRSLLDQ 162 (197)
Q Consensus 149 ~~~CP~CR~~v~~~ 162 (197)
...||+|..+....
T Consensus 39 ~p~CPlC~s~M~~~ 52 (59)
T PF14169_consen 39 EPVCPLCKSPMVSG 52 (59)
T ss_pred CccCCCcCCccccc
Confidence 46799999887654
No 221
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=40.67 E-value=1e+02 Score=25.37 Aligned_cols=14 Identities=7% Similarity=-0.194 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHh
Q 029206 53 ICALGLNSIVRCAL 66 (197)
Q Consensus 53 i~~l~i~~~~~~~~ 66 (197)
++++++.++..|+.
T Consensus 203 ~vf~LvgLyr~C~k 216 (259)
T PF07010_consen 203 SVFTLVGLYRMCWK 216 (259)
T ss_pred HHHHHHHHHHHhhc
Confidence 33333344444443
No 222
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=40.56 E-value=13 Score=30.49 Aligned_cols=41 Identities=27% Similarity=0.408 Sum_probs=30.4
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhC--CCCCcc
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS--HSSCPT 154 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~ 154 (197)
+..|+|-+.++..+ ....+|+|.|-.+-|...++. ...||.
T Consensus 189 ~nrCpitl~p~~~p---ils~kcnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 189 SNRCPITLNPDFYP---ILSSKCNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred cccCCcccCcchhH---HHHhhhcccccHHHHHHHhcCCceeecch
Confidence 45799988776544 244469999999999999874 455774
No 223
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=40.35 E-value=17 Score=36.30 Aligned_cols=29 Identities=28% Similarity=0.309 Sum_probs=22.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029206 38 DTNMVIILAALLCALICALGLNSIVRCAL 66 (197)
Q Consensus 38 ~~~~~iil~~~~~~~i~~l~i~~~~~~~~ 66 (197)
.++|+|++++++.+++++++++++++|-+
T Consensus 976 vp~wiIi~svl~GLLlL~llv~~LwK~GF 1004 (1030)
T KOG3637|consen 976 VPLWIIILSVLGGLLLLALLVLLLWKCGF 1004 (1030)
T ss_pred cceeeehHHHHHHHHHHHHHHHHHHhcCc
Confidence 45677888888888888888877777654
No 224
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=40.17 E-value=60 Score=25.31 Aligned_cols=18 Identities=17% Similarity=0.169 Sum_probs=9.6
Q ss_pred CCCCCcCCCCCCCCchHH
Q 029206 24 GSRTRSTVSNEANFDTNM 41 (197)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~ 41 (197)
|.-|-...+...+++++.
T Consensus 14 ~~~~~~~gmp~ld~~t~~ 31 (181)
T PRK13454 14 GHAASAPGMPQLDFSTFP 31 (181)
T ss_pred ccccCCCCCCCCcHHhcc
Confidence 444555556666655443
No 225
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=40.13 E-value=45 Score=22.87 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 029206 41 MVIILAALLCALIC 54 (197)
Q Consensus 41 ~~iil~~~~~~~i~ 54 (197)
+|+.|++++..+++
T Consensus 42 FWv~LA~FV~~lF~ 55 (90)
T PF15183_consen 42 FWVSLAAFVVFLFL 55 (90)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445544444333
No 226
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=39.60 E-value=65 Score=22.71 Aligned_cols=35 Identities=6% Similarity=0.036 Sum_probs=19.2
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 029206 29 STVSNEANFDTNMVIILAALLCALICALGLNSIVR 63 (197)
Q Consensus 29 ~~~~~~~~~~~~~~iil~~~~~~~i~~l~i~~~~~ 63 (197)
+.|....++...++++++++.+....++++.+..+
T Consensus 12 ~CY~~~~d~~~~Wl~~i~~~~v~~~t~~~l~iYp~ 46 (97)
T PF04834_consen 12 DCYDKKSDMPNYWLYAIGIVLVFCSTFFSLAIYPC 46 (97)
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhe
Confidence 45666678876766666654444333444333333
No 227
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=39.19 E-value=57 Score=20.65 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=8.4
Q ss_pred CCCCchHHHHHHHHHHHHHH
Q 029206 34 EANFDTNMVIILAALLCALI 53 (197)
Q Consensus 34 ~~~~~~~~~iil~~~~~~~i 53 (197)
....+..++++++.++++++
T Consensus 15 ~~~~pl~l~il~~f~~G~ll 34 (68)
T PF06305_consen 15 QFPLPLGLLILIAFLLGALL 34 (68)
T ss_pred eccchHHHHHHHHHHHHHHH
Confidence 33344444444444444333
No 228
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=39.11 E-value=15 Score=25.67 Aligned_cols=28 Identities=29% Similarity=0.816 Sum_probs=19.2
Q ss_pred CCCCcccHhHHHHHHhCCCCCcccccCCcCCC
Q 029206 132 KCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQP 163 (197)
Q Consensus 132 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~~ 163 (197)
+||-.|-.+ . ++.-+.||-|+....+.+
T Consensus 63 kCGfef~~~---~-ik~pSRCP~CKSE~Ie~p 90 (97)
T COG3357 63 KCGFEFRDD---K-IKKPSRCPKCKSEWIEEP 90 (97)
T ss_pred ccCcccccc---c-cCCcccCCcchhhcccCC
Confidence 477777652 2 455678999998776654
No 229
>PF15179 Myc_target_1: Myc target protein 1
Probab=38.78 E-value=94 Score=24.61 Aligned_cols=17 Identities=0% Similarity=0.024 Sum_probs=7.3
Q ss_pred cCCCCCCCCchHHHHHH
Q 029206 29 STVSNEANFDTNMVIIL 45 (197)
Q Consensus 29 ~~~~~~~~~~~~~~iil 45 (197)
+++..+.+++..++.+.
T Consensus 10 ~~~~~~f~~~~lIlaF~ 26 (197)
T PF15179_consen 10 LEWLENFDWEDLILAFC 26 (197)
T ss_pred ccchhhcchhhHHHHHH
Confidence 34444444444444333
No 230
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.74 E-value=15 Score=25.60 Aligned_cols=13 Identities=31% Similarity=0.989 Sum_probs=11.1
Q ss_pred cccHhHHHHHHhC
Q 029206 136 GFHVRCIDTWLMS 148 (197)
Q Consensus 136 ~FH~~Ci~~Wl~~ 148 (197)
-||+.|+..|+..
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999954
No 231
>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus
Probab=38.38 E-value=16 Score=29.22 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=18.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Q 029206 36 NFDTNMVIILAALLCALICALGLNSIVR-CALR 67 (197)
Q Consensus 36 ~~~~~~~iil~~~~~~~i~~l~i~~~~~-~~~r 67 (197)
.++.-.+|-|.+.++++|++|+-.++++ |+.|
T Consensus 95 Glavh~~iTITvSlImViaAliTtlvlK~C~~~ 127 (205)
T PF15298_consen 95 GLAVHQIITITVSLIMVIAALITTLVLKNCCAQ 127 (205)
T ss_pred CCCceEEEEEeeehhHHHHHhhhhhhhhhhhhh
Confidence 6666666666665555555555555554 4444
No 232
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=38.08 E-value=14 Score=31.21 Aligned_cols=32 Identities=28% Similarity=0.637 Sum_probs=24.9
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHH
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCID 143 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~ 143 (197)
-..|.||+.+-.+.+.+..-. |..-||.-|+-
T Consensus 314 C~lC~IC~~P~~E~E~~FCD~-CDRG~HT~CVG 345 (381)
T KOG1512|consen 314 CELCRICLGPVIESEHLFCDV-CDRGPHTLCVG 345 (381)
T ss_pred cHhhhccCCcccchheecccc-ccCCCCccccc
Confidence 456999999987777665554 88999999964
No 233
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=37.94 E-value=6.8 Score=23.00 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=14.5
Q ss_pred CCCCcccHhHHHHHHhCCCCCccccc
Q 029206 132 KCNHGFHVRCIDTWLMSHSSCPTCRR 157 (197)
Q Consensus 132 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 157 (197)
.|||.|-...-..= .....||.|..
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 48888765321110 23456999987
No 234
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=37.83 E-value=59 Score=28.40 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhhhccc
Q 029206 55 ALGLNSIVRCALRCSRR 71 (197)
Q Consensus 55 ~l~i~~~~~~~~r~~rr 71 (197)
++++.++++..+|+||.
T Consensus 322 IVLIMvIIYLILRYRRK 338 (353)
T TIGR01477 322 IVLIMVIIYLILRYRRK 338 (353)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 33344555566666553
No 235
>PTZ00046 rifin; Provisional
Probab=37.57 E-value=61 Score=28.38 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhhhccc
Q 029206 55 ALGLNSIVRCALRCSRR 71 (197)
Q Consensus 55 ~l~i~~~~~~~~r~~rr 71 (197)
++++.++++..+|+||.
T Consensus 327 IVLIMvIIYLILRYRRK 343 (358)
T PTZ00046 327 IVLIMVIIYLILRYRRK 343 (358)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 33344455556666553
No 236
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.40 E-value=52 Score=24.01 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 029206 41 MVIILAALLCALIC 54 (197)
Q Consensus 41 ~~iil~~~~~~~i~ 54 (197)
|.++++++++++++
T Consensus 94 m~~il~~v~~i~l~ 107 (116)
T KOG0860|consen 94 MRIILGLVIIILLV 107 (116)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444433333
No 237
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=37.15 E-value=57 Score=32.58 Aligned_cols=51 Identities=20% Similarity=0.440 Sum_probs=35.1
Q ss_pred CCCcccccccccc---cCCceEEcCCCCCcccHhHHHHHHh-CCCCCcccccCCc
Q 029206 110 KATDCAICLVDFM---DGEKVRVLPKCNHGFHVRCIDTWLM-SHSSCPTCRRSLL 160 (197)
Q Consensus 110 ~~~~C~ICl~~~~---~~~~i~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~v~ 160 (197)
....|.||-++.. +++.-.....|+--.|+.|.+-=.+ .++.||-|++.+-
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 4567999998864 3443344444667799999954333 2567999999885
No 238
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=36.63 E-value=20 Score=30.25 Aligned_cols=7 Identities=43% Similarity=0.439 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 029206 40 NMVIILA 46 (197)
Q Consensus 40 ~~~iil~ 46 (197)
++-+|++
T Consensus 277 l~piil~ 283 (305)
T PF04639_consen 277 LLPIILI 283 (305)
T ss_pred hhHHHHH
Confidence 3333333
No 239
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=36.52 E-value=5.7 Score=28.82 Aligned_cols=11 Identities=27% Similarity=0.640 Sum_probs=0.0
Q ss_pred HHHHHHHHHHh
Q 029206 56 LGLNSIVRCAL 66 (197)
Q Consensus 56 l~i~~~~~~~~ 66 (197)
|++.+++-||.
T Consensus 36 LgiLLliGCWY 46 (118)
T PF14991_consen 36 LGILLLIGCWY 46 (118)
T ss_dssp -----------
T ss_pred HHHHHHHhhee
Confidence 33333344443
No 240
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=36.40 E-value=18 Score=33.50 Aligned_cols=36 Identities=22% Similarity=0.450 Sum_probs=24.7
Q ss_pred CCCCccccccccccc-----------CCceEEcCCCCCcccHhHHHHHH
Q 029206 109 IKATDCAICLVDFMD-----------GEKVRVLPKCNHGFHVRCIDTWL 146 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~-----------~~~i~~lp~C~H~FH~~Ci~~Wl 146 (197)
.....|+||-+.|+. .+.+++. =|-+||..|+..-.
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le--~G~ifH~~Cl~e~~ 557 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLE--FGRIFHSKCLSEKR 557 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeec--cCceeeccccchHH
Confidence 445679999999862 1234332 47899999987743
No 241
>PF05398 PufQ: PufQ cytochrome subunit; InterPro: IPR008800 This family consists of bacterial PufQ proteins. PufQ is required for bacteriochlorophyll biosynthesis serving a regulatory function in the formation of photosynthetic complexes [].; GO: 0015979 photosynthesis, 0030494 bacteriochlorophyll biosynthetic process
Probab=36.33 E-value=1.2e+02 Score=20.15 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=14.6
Q ss_pred CCCCCCCchHHHHHHHHHHHHHH
Q 029206 31 VSNEANFDTNMVIILAALLCALI 53 (197)
Q Consensus 31 ~~~~~~~~~~~~iil~~~~~~~i 53 (197)
.....+|..|+.+|+.+-+-+..
T Consensus 15 ~~~k~Ef~vYFalIflaAlP~a~ 37 (73)
T PF05398_consen 15 RAPKAEFYVYFALIFLAALPFAT 37 (73)
T ss_pred CCCCchhhHHHHHHHHHHHHHHH
Confidence 33448888888877665554433
No 242
>PLN02248 cellulose synthase-like protein
Probab=36.10 E-value=47 Score=33.36 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=26.9
Q ss_pred CCCcccHhHHHHHHhCCCCCcccccCCcCCCC
Q 029206 133 CNHGFHVRCIDTWLMSHSSCPTCRRSLLDQPT 164 (197)
Q Consensus 133 C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~~~ 164 (197)
|++..|++|...-++....||-|+.++...+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (1135)
T PLN02248 150 CGFKICRDCYIDAVKSGGICPGCKEPYKVTDL 181 (1135)
T ss_pred ccchhHHhHhhhhhhcCCCCCCCccccccccc
Confidence 77889999999989888999999998854333
No 243
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.02 E-value=11 Score=33.76 Aligned_cols=37 Identities=19% Similarity=0.451 Sum_probs=26.8
Q ss_pred CcccccccccccCCc-----eEEcCCCCCcccHhHHHHHHhCC
Q 029206 112 TDCAICLVDFMDGEK-----VRVLPKCNHGFHVRCIDTWLMSH 149 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~-----i~~lp~C~H~FH~~Ci~~Wl~~~ 149 (197)
..|+.|....+.+.. ....+ |+|.||..|+..|-...
T Consensus 227 k~CP~c~~~iek~~gc~~~~~~~~~-c~~~FCw~Cl~~~~~h~ 268 (444)
T KOG1815|consen 227 KECPKCKVPIEKDGGCNHMTCKSAS-CKHEFCWVCLASLSDHG 268 (444)
T ss_pred ccCCCcccchhccCCccccccccCC-cCCeeceeeeccccccc
Confidence 459999988876652 22223 99999999999987553
No 244
>PRK11827 hypothetical protein; Provisional
Probab=35.75 E-value=15 Score=23.59 Aligned_cols=19 Identities=32% Similarity=0.657 Sum_probs=11.0
Q ss_pred HHHHhCCCCCcccccCCcC
Q 029206 143 DTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 143 ~~Wl~~~~~CP~CR~~v~~ 161 (197)
++||..--.||.|+..+..
T Consensus 2 d~~LLeILaCP~ckg~L~~ 20 (60)
T PRK11827 2 DHRLLEIIACPVCNGKLWY 20 (60)
T ss_pred ChHHHhheECCCCCCcCeE
Confidence 3455555567777666643
No 245
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=34.62 E-value=28 Score=22.28 Aligned_cols=11 Identities=45% Similarity=1.150 Sum_probs=7.8
Q ss_pred CCCCcccccCC
Q 029206 149 HSSCPTCRRSL 159 (197)
Q Consensus 149 ~~~CP~CR~~v 159 (197)
+..||+|+..+
T Consensus 2 k~~CPlCkt~~ 12 (61)
T PF05715_consen 2 KSLCPLCKTTL 12 (61)
T ss_pred CccCCcccchh
Confidence 45688887766
No 246
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=34.20 E-value=4.8 Score=30.77 Aligned_cols=8 Identities=13% Similarity=0.247 Sum_probs=3.0
Q ss_pred HHHHHHhh
Q 029206 60 SIVRCALR 67 (197)
Q Consensus 60 ~~~~~~~r 67 (197)
++++|+.|
T Consensus 69 lvf~~c~r 76 (154)
T PF04478_consen 69 LVFIFCIR 76 (154)
T ss_pred hheeEEEe
Confidence 33333333
No 247
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=34.16 E-value=15 Score=19.60 Aligned_cols=14 Identities=29% Similarity=0.871 Sum_probs=7.2
Q ss_pred CCcccccCCcCCCC
Q 029206 151 SCPTCRRSLLDQPT 164 (197)
Q Consensus 151 ~CP~CR~~v~~~~~ 164 (197)
.||.|...+...++
T Consensus 1 ~CP~C~s~l~~~~~ 14 (28)
T PF03119_consen 1 TCPVCGSKLVREEG 14 (28)
T ss_dssp B-TTT--BEEE-CC
T ss_pred CcCCCCCEeEcCCC
Confidence 49999988875444
No 248
>KOG4482 consensus Sarcoglycan complex, alpha/epsilon subunits [Function unknown]
Probab=33.32 E-value=63 Score=28.55 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=23.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029206 35 ANFDTNMVIILAALLCALICALGLNSIVRCALRC 68 (197)
Q Consensus 35 ~~~~~~~~iil~~~~~~~i~~l~i~~~~~~~~r~ 68 (197)
-+|-.++.+.+++-+.++++++++..++.|+.|-
T Consensus 291 Rdyy~df~~tfaIpl~Valll~~~La~imc~rrE 324 (449)
T KOG4482|consen 291 RDYYGDFLHTFAIPLGVALLLVLALAYIMCCRRE 324 (449)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4666677777777777777666666777777653
No 249
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=33.22 E-value=33 Score=31.03 Aligned_cols=49 Identities=20% Similarity=0.542 Sum_probs=30.0
Q ss_pred CCccccccccc-ccCCceEEcCCCCCcccHhHHHHHHhC----CC----CCcccccCC
Q 029206 111 ATDCAICLVDF-MDGEKVRVLPKCNHGFHVRCIDTWLMS----HS----SCPTCRRSL 159 (197)
Q Consensus 111 ~~~C~ICl~~~-~~~~~i~~lp~C~H~FH~~Ci~~Wl~~----~~----~CP~CR~~v 159 (197)
..+|++|..-. -....+....+|+-.||..|-..-... .. -|=+|....
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 44599998432 233355555568889999997653321 11 288886543
No 250
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=33.04 E-value=1e+02 Score=20.57 Aligned_cols=8 Identities=25% Similarity=0.152 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 029206 58 LNSIVRCA 65 (197)
Q Consensus 58 i~~~~~~~ 65 (197)
+.++..|.
T Consensus 20 ~wl~lHY~ 27 (75)
T TIGR02976 20 LWLILHYR 27 (75)
T ss_pred HHHHHHHH
Confidence 33334443
No 251
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=33.02 E-value=36 Score=24.23 Aligned_cols=32 Identities=22% Similarity=0.411 Sum_probs=26.2
Q ss_pred cccccccccccCCceEEcCCCCCcccHhHHHHHH
Q 029206 113 DCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWL 146 (197)
Q Consensus 113 ~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl 146 (197)
.|.||-+++-.++....+.+ -..|.+|+..=.
T Consensus 4 kC~iCg~~I~~gqlFTF~~k--G~VH~~C~~~~~ 35 (101)
T PF09943_consen 4 KCYICGKPIYEGQLFTFTKK--GPVHYECFREKA 35 (101)
T ss_pred EEEecCCeeeecceEEEecC--CcEeHHHHHHHH
Confidence 69999999999887777753 678999988754
No 252
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.72 E-value=52 Score=21.98 Aligned_cols=30 Identities=30% Similarity=0.752 Sum_probs=22.7
Q ss_pred CCcccHhHHHHHHhCCCCCcccccCCcCCCCC
Q 029206 134 NHGFHVRCIDTWLMSHSSCPTCRRSLLDQPTS 165 (197)
Q Consensus 134 ~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~~~~ 165 (197)
.|.|+.+|.+.-| +..||.|--.++-.+--
T Consensus 28 EcTFCadCae~~l--~g~CPnCGGelv~RP~R 57 (84)
T COG3813 28 ECTFCADCAENRL--HGLCPNCGGELVARPIR 57 (84)
T ss_pred eeehhHhHHHHhh--cCcCCCCCchhhcCcCC
Confidence 3789999998754 67899998877654433
No 253
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=32.65 E-value=88 Score=23.68 Aligned_cols=11 Identities=18% Similarity=0.308 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 029206 52 LICALGLNSIV 62 (197)
Q Consensus 52 ~i~~l~i~~~~ 62 (197)
++++.+++.++
T Consensus 130 l~i~~giy~~~ 140 (145)
T PF10661_consen 130 LAICGGIYVVL 140 (145)
T ss_pred HHHHHHHHHHH
Confidence 33334443333
No 254
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=32.37 E-value=15 Score=37.73 Aligned_cols=51 Identities=27% Similarity=0.580 Sum_probs=37.7
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCC----CCcccccCC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHS----SCPTCRRSL 159 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~v 159 (197)
......|-+|+...+..+.+... .|.-.||..|++.-+..-. .||-||..-
T Consensus 1105 s~~~~~c~~cr~k~~~~~m~lc~-~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1105 SAVNALCKVCRRKKQDEKMLLCD-ECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred ccchhhhhhhhhcccchhhhhhH-hhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 44456799999887775555444 4889999999999775432 499998755
No 255
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=32.27 E-value=37 Score=18.21 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=18.2
Q ss_pred cccccccccccCCceEEcCCCCCcccHhH
Q 029206 113 DCAICLVDFMDGEKVRVLPKCNHGFHVRC 141 (197)
Q Consensus 113 ~C~ICl~~~~~~~~i~~lp~C~H~FH~~C 141 (197)
.|.+|..+..... ......|...+|..|
T Consensus 2 ~C~~C~~~~~~~~-~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-FYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcCCCE-eEEeCCCCCeEcCcc
Confidence 4888977765443 444445777788777
No 256
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=31.47 E-value=70 Score=25.01 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=15.2
Q ss_pred HhCCCCCcccccCCcCCCCC
Q 029206 146 LMSHSSCPTCRRSLLDQPTS 165 (197)
Q Consensus 146 l~~~~~CP~CR~~v~~~~~~ 165 (197)
+...-.||.|...+...++.
T Consensus 133 ~~~~F~Cp~Cg~~L~~~dn~ 152 (178)
T PRK06266 133 MEYGFRCPQCGEMLEEYDNS 152 (178)
T ss_pred hhcCCcCCCCCCCCeecccH
Confidence 44567899999999876554
No 257
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=31.31 E-value=81 Score=24.95 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=11.5
Q ss_pred ccHhHHHHHH--hCCCCCcc
Q 029206 137 FHVRCIDTWL--MSHSSCPT 154 (197)
Q Consensus 137 FH~~Ci~~Wl--~~~~~CP~ 154 (197)
...+-+..|| .++..+|+
T Consensus 124 ~~G~~~R~~L~~Lr~~~~p~ 143 (186)
T PF07406_consen 124 LPGENFRSYLLDLRNSSTPL 143 (186)
T ss_pred cccccHHHHHHHHHhccCCc
Confidence 4456788888 55555554
No 258
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=31.07 E-value=21 Score=21.94 Aligned_cols=38 Identities=21% Similarity=0.469 Sum_probs=19.1
Q ss_pred CcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccC
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRS 158 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 158 (197)
..|+.|-+.|.... | +.|+.-...-+ .+.-.||+|...
T Consensus 3 f~CP~C~~~~~~~~----L--~~H~~~~H~~~---~~~v~CPiC~~~ 40 (54)
T PF05605_consen 3 FTCPYCGKGFSESS----L--VEHCEDEHRSE---SKNVVCPICSSR 40 (54)
T ss_pred cCCCCCCCccCHHH----H--HHHHHhHCcCC---CCCccCCCchhh
Confidence 46899987554321 2 44431111111 123459999764
No 259
>PF15345 TMEM51: Transmembrane protein 51
Probab=30.89 E-value=45 Score=27.33 Aligned_cols=12 Identities=25% Similarity=0.152 Sum_probs=6.9
Q ss_pred CcccccCCcccc
Q 029206 1 MVTLNHRPHRLL 12 (197)
Q Consensus 1 ~~~~~~~~~~~~ 12 (197)
|.+-|-.||+--
T Consensus 23 M~vW~~VPg~~~ 34 (233)
T PF15345_consen 23 MIVWNLVPGFSS 34 (233)
T ss_pred heeeeecccccC
Confidence 455566776543
No 260
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=30.57 E-value=1.1e+02 Score=24.36 Aligned_cols=10 Identities=0% Similarity=-0.313 Sum_probs=4.2
Q ss_pred CCCCCCchHH
Q 029206 32 SNEANFDTNM 41 (197)
Q Consensus 32 ~~~~~~~~~~ 41 (197)
....+++++.
T Consensus 44 ~p~~~~~~~~ 53 (204)
T PRK09174 44 FPPFDSTHYA 53 (204)
T ss_pred CCCCcchhcc
Confidence 3444444333
No 261
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=30.40 E-value=1e+02 Score=20.74 Aligned_cols=7 Identities=57% Similarity=0.809 Sum_probs=3.7
Q ss_pred HHHHHHh
Q 029206 60 SIVRCAL 66 (197)
Q Consensus 60 ~~~~~~~ 66 (197)
+++||++
T Consensus 44 liVRCfr 50 (81)
T PF11057_consen 44 LIVRCFR 50 (81)
T ss_pred HHHHHHH
Confidence 4456654
No 262
>PF15353 HECA: Headcase protein family homologue
Probab=30.32 E-value=30 Score=24.78 Aligned_cols=14 Identities=21% Similarity=0.703 Sum_probs=12.0
Q ss_pred CCCcccHhHHHHHH
Q 029206 133 CNHGFHVRCIDTWL 146 (197)
Q Consensus 133 C~H~FH~~Ci~~Wl 146 (197)
.++..|.+|++.|=
T Consensus 40 ~~~~MH~~CF~~wE 53 (107)
T PF15353_consen 40 FGQYMHRECFEKWE 53 (107)
T ss_pred CCCchHHHHHHHHH
Confidence 46889999999994
No 263
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=29.56 E-value=36 Score=20.02 Aligned_cols=20 Identities=30% Similarity=0.875 Sum_probs=14.8
Q ss_pred HHHHhCCCCCcccccCCcCC
Q 029206 143 DTWLMSHSSCPTCRRSLLDQ 162 (197)
Q Consensus 143 ~~Wl~~~~~CP~CR~~v~~~ 162 (197)
.-|-.-..+||.|..++...
T Consensus 11 ~G~~ML~~~Cp~C~~PL~~~ 30 (41)
T PF06677_consen 11 QGWTMLDEHCPDCGTPLMRD 30 (41)
T ss_pred HhHhHhcCccCCCCCeeEEe
Confidence 44556677899998888773
No 264
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.55 E-value=39 Score=32.01 Aligned_cols=45 Identities=29% Similarity=0.663 Sum_probs=31.2
Q ss_pred cccccccccccCCceEEcCCCCC-cccHhHHHHHH--hC----CCCCcccccCCcC
Q 029206 113 DCAICLVDFMDGEKVRVLPKCNH-GFHVRCIDTWL--MS----HSSCPTCRRSLLD 161 (197)
Q Consensus 113 ~C~ICl~~~~~~~~i~~lp~C~H-~FH~~Ci~~Wl--~~----~~~CP~CR~~v~~ 161 (197)
.|+||-..+ +.. ....|+| ..+..|..... .. ...||+||..+..
T Consensus 2 ~c~ic~~s~---~~~-~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~ 53 (669)
T KOG2231|consen 2 SCAICAFSP---DFV-GRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVET 53 (669)
T ss_pred CcceeecCc---ccc-ccccccccccchhhhhhhhhhcccccccccCcccccceee
Confidence 489997654 222 3345999 79999988755 22 3458999997754
No 265
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=29.54 E-value=33 Score=24.71 Aligned_cols=26 Identities=15% Similarity=0.476 Sum_probs=15.3
Q ss_pred CcccccccccccCC-ceEEcCCCCCcc
Q 029206 112 TDCAICLVDFMDGE-KVRVLPKCNHGF 137 (197)
Q Consensus 112 ~~C~ICl~~~~~~~-~i~~lp~C~H~F 137 (197)
..|+-|-.+|.-.+ ...+.|.|+|-+
T Consensus 3 p~CP~C~seytY~dg~~~iCpeC~~EW 29 (109)
T TIGR00686 3 PPCPKCNSEYTYHDGTQLICPSCLYEW 29 (109)
T ss_pred CcCCcCCCcceEecCCeeECccccccc
Confidence 35888888875332 344555566643
No 266
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=29.54 E-value=25 Score=18.35 Aligned_cols=9 Identities=44% Similarity=1.268 Sum_probs=7.1
Q ss_pred CCcccccCC
Q 029206 151 SCPTCRRSL 159 (197)
Q Consensus 151 ~CP~CR~~v 159 (197)
.||+|.+.+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 599997766
No 267
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=29.28 E-value=1.2e+02 Score=22.12 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=7.5
Q ss_pred HHHHHHHhcCCCHHHHh
Q 029206 79 ETAARLAARGLKKSALR 95 (197)
Q Consensus 79 ~~~~~~~~~~~~~~~~~ 95 (197)
+..+++.+.+.+-..++
T Consensus 94 dvSrRL~aEgKdIdeLK 110 (128)
T PF15145_consen 94 DVSRRLTAEGKDIDELK 110 (128)
T ss_pred HHHHHHHhccCCHHHHH
Confidence 33444455544444333
No 268
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=29.08 E-value=38 Score=22.78 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=20.8
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHH
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDT 144 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~ 144 (197)
...|.+|-...-.--....- .|.-.||-.|...
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~~-~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSHP-GCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCCCCeEEEEeCC-CCCcEEChHHHcc
Confidence 45799998552211222322 4999999999755
No 269
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=29.04 E-value=39 Score=27.87 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=18.0
Q ss_pred CcccccccccccCCceEEcCCCCCcc
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHGF 137 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~F 137 (197)
..|++|-..+...+.--.+. .+|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~-~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICP-QNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcC-CCCCC
Confidence 35999999997655544554 67887
No 270
>PRK11901 hypothetical protein; Reviewed
Probab=28.82 E-value=1.1e+02 Score=26.39 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 029206 48 LLCALICALGLNSIV 62 (197)
Q Consensus 48 ~~~~~i~~l~i~~~~ 62 (197)
++.+++++++|...+
T Consensus 44 ilVLlLLIi~IgSAL 58 (327)
T PRK11901 44 ILVLLLLIIAIGSAL 58 (327)
T ss_pred HHHHHHHHHHHhhhc
Confidence 333444455555444
No 271
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=28.53 E-value=53 Score=23.17 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=20.6
Q ss_pred CCCcccHhHHHHHHhCCCCCcccccCCcCCC
Q 029206 133 CNHGFHVRCIDTWLMSHSSCPTCRRSLLDQP 163 (197)
Q Consensus 133 C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~~ 163 (197)
||+.-|.--+.++. .-..||.|+.++.+.-
T Consensus 65 CGvC~~~LT~~EY~-~~~~Cp~C~spFNp~C 94 (105)
T COG4357 65 CGVCRKLLTRAEYG-MCGSCPYCQSPFNPGC 94 (105)
T ss_pred hhhhhhhhhHHHHh-hcCCCCCcCCCCCccc
Confidence 77777766666653 3345999999886543
No 272
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=28.41 E-value=2.5e+02 Score=21.55 Aligned_cols=27 Identities=30% Similarity=0.146 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029206 42 VIILAALLCALICALGLNSIVRCALRC 68 (197)
Q Consensus 42 ~iil~~~~~~~i~~l~i~~~~~~~~r~ 68 (197)
..++.+++-+++++++..++.+...|+
T Consensus 104 ~T~lLW~~Pv~llllG~~~~~~~~rrr 130 (153)
T COG3088 104 QTLLLWGLPVVLLLLGGVLLVRRARRR 130 (153)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 345556666666666666666654444
No 273
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=28.30 E-value=82 Score=23.51 Aligned_cols=7 Identities=29% Similarity=0.344 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 029206 41 MVIILAA 47 (197)
Q Consensus 41 ~~iil~~ 47 (197)
+++++++
T Consensus 23 Wwll~~l 29 (146)
T PF14316_consen 23 WWLLLAL 29 (146)
T ss_pred HHHHHHH
Confidence 4444433
No 274
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.02 E-value=46 Score=25.57 Aligned_cols=45 Identities=22% Similarity=0.484 Sum_probs=28.5
Q ss_pred cccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCC
Q 029206 115 AICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQ 162 (197)
Q Consensus 115 ~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~ 162 (197)
.||+.--...+....-|.=.+-||.+|=.+-+. .||.|..+|.-.
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI~---~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTIT---SCPNCSTPIRGD 52 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHHH---HCcCCCCCCCCc
Confidence 366655444444444443446799999777543 499999988644
No 275
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=27.98 E-value=2e+02 Score=19.53 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029206 40 NMVIILAALLCALICALGLNSIVRCALRC 68 (197)
Q Consensus 40 ~~~iil~~~~~~~i~~l~i~~~~~~~~r~ 68 (197)
..-++..+++.=+++.++|....+++.|.
T Consensus 32 s~g~LaGiV~~D~vlTLLIv~~vy~car~ 60 (79)
T PF07213_consen 32 SPGLLAGIVAADAVLTLLIVLVVYYCARP 60 (79)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34444444444444444444444444443
No 276
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=27.90 E-value=8.5 Score=32.39 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=19.7
Q ss_pred CCCCcccccccccccCCceEEcC--CCCCcccHhHHHHHHhCCCCCccccc
Q 029206 109 IKATDCAICLVDFMDGEKVRVLP--KCNHGFHVRCIDTWLMSHSSCPTCRR 157 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp--~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 157 (197)
.....|++|-..-.-. .++.-. .=.|.+|.-|=..|-.....||.|-.
T Consensus 170 w~~g~CPvCGs~P~~s-~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLS-VLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp TT-SS-TTT---EEEE-EEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred ccCCcCCCCCCcCceE-EEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 3346799997652211 111110 01245677788888888888999954
No 277
>PF15106 TMEM156: TMEM156 protein family
Probab=27.82 E-value=93 Score=25.20 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029206 41 MVIILAALLCALICALGL 58 (197)
Q Consensus 41 ~~iil~~~~~~~i~~l~i 58 (197)
.|.+|+.+++++++++++
T Consensus 177 TWYvLVllVfiflii~iI 194 (226)
T PF15106_consen 177 TWYVLVLLVFIFLIILII 194 (226)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555544444
No 278
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=27.80 E-value=69 Score=19.74 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=11.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Q 029206 37 FDTNMVIILAALLCALICALGLNSI 61 (197)
Q Consensus 37 ~~~~~~iil~~~~~~~i~~l~i~~~ 61 (197)
+|.-.+-+-+.++..+++++++.++
T Consensus 9 YDy~tLrigGLi~A~vlfi~Gi~ii 33 (50)
T PF02038_consen 9 YDYETLRIGGLIFAGVLFILGILII 33 (50)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhhccchHHHHHHHHHHHHHH
Confidence 3333444444444444555555444
No 279
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=27.74 E-value=85 Score=20.05 Aligned_cols=14 Identities=36% Similarity=0.356 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHH
Q 029206 40 NMVIILAALLCALI 53 (197)
Q Consensus 40 ~~~iil~~~~~~~i 53 (197)
++|++|++++++++
T Consensus 7 YWWiiLl~lvG~i~ 20 (63)
T PF13980_consen 7 YWWIILLILVGMII 20 (63)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666655544
No 280
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=27.70 E-value=40 Score=21.75 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=20.2
Q ss_pred CCCcccccCCcCCCCC-------------CcccccccccCCCCCCCC
Q 029206 150 SSCPTCRRSLLDQPTS-------------SDAAEMDSEIRHPGNPPG 183 (197)
Q Consensus 150 ~~CP~CR~~v~~~~~~-------------~~~~~~~~~~~~p~~~~~ 183 (197)
..||.|++.+...... .--.+..+.+.+|+.+..
T Consensus 7 v~CP~C~k~~~w~~~~~~rPFCS~RCk~IDLg~W~~e~y~Ip~~~~~ 53 (62)
T PRK00418 7 VNCPTCGKPVEWGEISPFRPFCSKRCQLIDLGEWAAEEKRIPSSGDL 53 (62)
T ss_pred ccCCCCCCcccccCCCCcCCcccHHHHhhhHHHHHcCCcccCCCCCC
Confidence 4699999987532211 112345667888876543
No 281
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=27.67 E-value=75 Score=24.25 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=14.3
Q ss_pred HhCCCCCcccccCCcCCCCC
Q 029206 146 LMSHSSCPTCRRSLLDQPTS 165 (197)
Q Consensus 146 l~~~~~CP~CR~~v~~~~~~ 165 (197)
+...-.||.|...+...++.
T Consensus 125 ~~~~F~Cp~Cg~~L~~~dn~ 144 (158)
T TIGR00373 125 MELNFTCPRCGAMLDYLDNS 144 (158)
T ss_pred HHcCCcCCCCCCEeeeccCH
Confidence 34567899999888765543
No 282
>PHA02935 Hypothetical protein; Provisional
Probab=27.25 E-value=2e+02 Score=23.37 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=14.7
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHHHH
Q 029206 29 STVSNEANFDTNMVIILAALLCALIC 54 (197)
Q Consensus 29 ~~~~~~~~~~~~~~iil~~~~~~~i~ 54 (197)
..|+-.++.+.++.+.++..+.++++
T Consensus 302 ndysapmnvdnlimivlitmlsiiii 327 (349)
T PHA02935 302 NDYSAPMNVDNLIMIVLITMLSIIII 327 (349)
T ss_pred ccccCCcccccchHHHHHHHHHHHHH
Confidence 55666667776655555554444433
No 283
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=26.75 E-value=21 Score=28.96 Aligned_cols=33 Identities=12% Similarity=0.048 Sum_probs=22.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029206 36 NFDTNMVIILAALLCALICALGLNSIVRCALRC 68 (197)
Q Consensus 36 ~~~~~~~iil~~~~~~~i~~l~i~~~~~~~~r~ 68 (197)
.-.-+..|+++++.+++.++|+|++.+..+..|
T Consensus 32 ~~~d~~~I~iaiVAG~~tVILVI~i~v~vR~CR 64 (221)
T PF08374_consen 32 RSKDYVKIMIAIVAGIMTVILVIFIVVLVRYCR 64 (221)
T ss_pred ccccceeeeeeeecchhhhHHHHHHHHHHHHHh
Confidence 334567788888888888777777666653333
No 284
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=26.55 E-value=76 Score=26.02 Aligned_cols=10 Identities=0% Similarity=0.016 Sum_probs=4.1
Q ss_pred hHHHHHHHHH
Q 029206 39 TNMVIILAAL 48 (197)
Q Consensus 39 ~~~~iil~~~ 48 (197)
.++|++++++
T Consensus 228 ~~~~~~i~~v 237 (251)
T PF09753_consen 228 CWTWLMIFVV 237 (251)
T ss_pred HHHHHHHHHH
Confidence 3444444333
No 285
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=26.40 E-value=93 Score=25.23 Aligned_cols=6 Identities=33% Similarity=0.490 Sum_probs=2.4
Q ss_pred CCCCCC
Q 029206 19 TPPTNG 24 (197)
Q Consensus 19 ~~p~~~ 24 (197)
++|+.+
T Consensus 99 s~~T~~ 104 (227)
T PF05399_consen 99 SSPTVQ 104 (227)
T ss_pred CCCccC
Confidence 333434
No 286
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=26.31 E-value=45 Score=25.00 Aligned_cols=23 Identities=22% Similarity=0.586 Sum_probs=16.5
Q ss_pred EcCCCCCcccHhHHHHHHhCCCCCcccccCC
Q 029206 129 VLPKCNHGFHVRCIDTWLMSHSSCPTCRRSL 159 (197)
Q Consensus 129 ~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v 159 (197)
..++|||+|+- -+..||.|....
T Consensus 31 kC~~CG~v~~P--------Pr~~Cp~C~~~~ 53 (140)
T COG1545 31 KCKKCGRVYFP--------PRAYCPKCGSET 53 (140)
T ss_pred EcCCCCeEEcC--------CcccCCCCCCCC
Confidence 33469999873 356699998874
No 287
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.23 E-value=11 Score=31.62 Aligned_cols=49 Identities=31% Similarity=0.531 Sum_probs=35.8
Q ss_pred CCcccccccccccC--Cce-EEcCC-------CCCcccHhHHHHHHhCC-CCCcccccCC
Q 029206 111 ATDCAICLVDFMDG--EKV-RVLPK-------CNHGFHVRCIDTWLMSH-SSCPTCRRSL 159 (197)
Q Consensus 111 ~~~C~ICl~~~~~~--~~i-~~lp~-------C~H~FH~~Ci~~Wl~~~-~~CP~CR~~v 159 (197)
...|.||...|... ..+ +++.. |+|..+..|++.=+... ..||.||...
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~~ 266 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWSH 266 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCccccee
Confidence 35699999999843 222 33333 99999999999977543 5799998753
No 288
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.12 E-value=72 Score=22.46 Aligned_cols=34 Identities=18% Similarity=0.420 Sum_probs=27.1
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHH
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWL 146 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl 146 (197)
.-.|.||-++..+++.....+ .-..|.+|+..=.
T Consensus 6 ewkC~VCg~~iieGqkFTF~~--kGsVH~eCl~~s~ 39 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK--KGSVHYECLAESK 39 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee--CCcchHHHHHHHH
Confidence 357999999999998877665 5568999998744
No 289
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=26.07 E-value=31 Score=29.59 Aligned_cols=42 Identities=17% Similarity=0.425 Sum_probs=27.3
Q ss_pred CCCcccccccccc-------cCCceEEcCCCCCcccHhHHHHHHhCCCCCccccc
Q 029206 110 KATDCAICLVDFM-------DGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRR 157 (197)
Q Consensus 110 ~~~~C~ICl~~~~-------~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 157 (197)
....|++|-..=. ..+..| |.+|.-|=..|-..+..||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~R------yL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLR------YLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCce------EEEcCCCCCcccccCccCCCCCC
Confidence 3567999976521 112223 34566677788888888999964
No 290
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=26.05 E-value=1.9e+02 Score=18.75 Aligned_cols=15 Identities=7% Similarity=0.029 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHhh
Q 029206 53 ICALGLNSIVRCALR 67 (197)
Q Consensus 53 i~~l~i~~~~~~~~r 67 (197)
.+++++++..+++.+
T Consensus 10 G~~~Gff~ar~~~~k 24 (64)
T PF03672_consen 10 GAVIGFFIARKYMEK 24 (64)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 291
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=26.04 E-value=1.7e+02 Score=19.77 Aligned_cols=18 Identities=17% Similarity=-0.044 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 029206 50 CALICALGLNSIVRCALR 67 (197)
Q Consensus 50 ~~~i~~l~i~~~~~~~~r 67 (197)
+++++++++.++++...+
T Consensus 17 ~VF~fL~lLi~~i~~~~~ 34 (82)
T TIGR01195 17 IVFLFLSLLIYAVRGMGK 34 (82)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333443333
No 292
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.58 E-value=6.7 Score=39.80 Aligned_cols=49 Identities=22% Similarity=0.482 Sum_probs=33.0
Q ss_pred CCCcccccccccccCCc----eEEcCCCCCcccHhHHHHHHhC---CCCCcccccCCc
Q 029206 110 KATDCAICLVDFMDGEK----VRVLPKCNHGFHVRCIDTWLMS---HSSCPTCRRSLL 160 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~----i~~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~v~ 160 (197)
.-.+|+||...... +- .+.. -|.-.||..|+-.|... +.+||+||....
T Consensus 1060 ~~~~~si~~~~~~~-~~~~~~~~r~-~c~~~f~~~~l~~w~s~ed~s~~~~~~r~~~~ 1115 (1312)
T KOG0803|consen 1060 RLREFSISHGSNDD-DLPFLSCLRA-FCPNKFHTECLVKWKSGEDISENCPLCRELST 1115 (1312)
T ss_pred HHHHhhhhccccch-hhhHHHHHHH-hhhhhhhchhhHHhhccccccccccchhhhhH
Confidence 34567887766544 11 1112 28899999999999843 347999998653
No 293
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.53 E-value=44 Score=28.38 Aligned_cols=38 Identities=21% Similarity=0.408 Sum_probs=27.8
Q ss_pred CCcccccccccccCCceEEcCCC-CCcccHhHHHHHHhCC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKC-NHGFHVRCIDTWLMSH 149 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C-~H~FH~~Ci~~Wl~~~ 149 (197)
-..|.+|.+.+++.-.+ +.|.- .|.||--|-++-++.+
T Consensus 268 pLcCTLC~ERLEDTHFV-QCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFV-QCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred ceeehhhhhhhccCcee-ecCCCcccceecccCHHHHHhh
Confidence 46799999998765544 33322 3899999999988765
No 294
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=25.36 E-value=50 Score=30.08 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=10.7
Q ss_pred CCCcccccccccccCC
Q 029206 110 KATDCAICLVDFMDGE 125 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~ 125 (197)
....|+-||+++...+
T Consensus 25 ~~~yCp~CL~~~p~~e 40 (483)
T PF05502_consen 25 DSYYCPNCLFEVPSSE 40 (483)
T ss_pred ceeECccccccCChhh
Confidence 3456888888875443
No 295
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=25.26 E-value=52 Score=25.57 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=13.1
Q ss_pred eEEcCCCCCcccHhHHHHHHhCCCCCccccc
Q 029206 127 VRVLPKCNHGFHVRCIDTWLMSHSSCPTCRR 157 (197)
Q Consensus 127 i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 157 (197)
+-+.+-|||.+-. .....||+|..
T Consensus 134 ~~vC~vCGy~~~g-------e~P~~CPiCga 157 (166)
T COG1592 134 VWVCPVCGYTHEG-------EAPEVCPICGA 157 (166)
T ss_pred EEEcCCCCCcccC-------CCCCcCCCCCC
Confidence 4445557775431 22346888864
No 296
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=25.13 E-value=61 Score=19.36 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=22.8
Q ss_pred CCccccccccc--ccCCceEEcCCCCCcccHhHHHH
Q 029206 111 ATDCAICLVDF--MDGEKVRVLPKCNHGFHVRCIDT 144 (197)
Q Consensus 111 ~~~C~ICl~~~--~~~~~i~~lp~C~H~FH~~Ci~~ 144 (197)
...|.+|-+.+ ......+-.- |+-.+|++|++.
T Consensus 11 ~~~C~~C~~~i~g~~~~g~~C~~-C~~~~H~~C~~~ 45 (53)
T PF00130_consen 11 PTYCDVCGKFIWGLGKQGYRCSW-CGLVCHKKCLSK 45 (53)
T ss_dssp TEB-TTSSSBECSSSSCEEEETT-TT-EEETTGGCT
T ss_pred CCCCcccCcccCCCCCCeEEECC-CCChHhhhhhhh
Confidence 45699998887 3455565554 999999999765
No 297
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=24.81 E-value=1.1e+02 Score=24.31 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029206 43 IILAALLCALICALGLNS 60 (197)
Q Consensus 43 iil~~~~~~~i~~l~i~~ 60 (197)
|+++++++++.+++++++
T Consensus 3 ii~~i~~~~vG~~~G~~~ 20 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLV 20 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 298
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=24.64 E-value=31 Score=19.61 Aligned_cols=30 Identities=23% Similarity=0.585 Sum_probs=17.7
Q ss_pred EcCCCCCcccHhHHHHHHhCCCCCcccccCCc
Q 029206 129 VLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 129 ~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
+.+.||++||..=-- -+....|..|...+.
T Consensus 3 ~C~~Cg~~Yh~~~~p--P~~~~~Cd~cg~~L~ 32 (36)
T PF05191_consen 3 ICPKCGRIYHIEFNP--PKVEGVCDNCGGELV 32 (36)
T ss_dssp EETTTTEEEETTTB----SSTTBCTTTTEBEB
T ss_pred CcCCCCCccccccCC--CCCCCccCCCCCeeE
Confidence 445699999932111 034456888876554
No 299
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=24.31 E-value=36 Score=18.58 Aligned_cols=24 Identities=25% Similarity=0.743 Sum_probs=9.6
Q ss_pred ccccccccccc-CCceEEcCCCCCc
Q 029206 113 DCAICLVDFMD-GEKVRVLPKCNHG 136 (197)
Q Consensus 113 ~C~ICl~~~~~-~~~i~~lp~C~H~ 136 (197)
.|+-|-.++.- +..+.+.|.|+|.
T Consensus 4 ~Cp~C~se~~y~D~~~~vCp~C~~e 28 (30)
T PF08274_consen 4 KCPLCGSEYTYEDGELLVCPECGHE 28 (30)
T ss_dssp --TTT-----EE-SSSEEETTTTEE
T ss_pred CCCCCCCcceeccCCEEeCCccccc
Confidence 57888777642 2344556667774
No 300
>PRK01343 zinc-binding protein; Provisional
Probab=23.97 E-value=52 Score=20.88 Aligned_cols=35 Identities=17% Similarity=0.376 Sum_probs=18.8
Q ss_pred CCCCcccccCCcCCC---------CCCcccccccccCCCCCCCC
Q 029206 149 HSSCPTCRRSLLDQP---------TSSDAAEMDSEIRHPGNPPG 183 (197)
Q Consensus 149 ~~~CP~CR~~v~~~~---------~~~~~~~~~~~~~~p~~~~~ 183 (197)
...||+|++++...- ..+--.+..+.+.+|+.++.
T Consensus 9 ~~~CP~C~k~~~~~~rPFCS~RC~~iDLg~W~~e~Y~Ip~~~~~ 52 (57)
T PRK01343 9 TRPCPECGKPSTREAYPFCSERCRDIDLNRWLSGSYVIPGAPDE 52 (57)
T ss_pred CCcCCCCCCcCcCCCCcccCHHHhhhhHHHHhCCCcccCCCCcc
Confidence 356888887764211 11122345567777775443
No 301
>PRK10220 hypothetical protein; Provisional
Probab=23.89 E-value=60 Score=23.42 Aligned_cols=25 Identities=20% Similarity=0.660 Sum_probs=13.9
Q ss_pred CcccccccccccCC-ceEEcCCCCCc
Q 029206 112 TDCAICLVDFMDGE-KVRVLPKCNHG 136 (197)
Q Consensus 112 ~~C~ICl~~~~~~~-~i~~lp~C~H~ 136 (197)
..|+-|-.+|.-.+ ...+.|.|+|-
T Consensus 4 P~CP~C~seytY~d~~~~vCpeC~hE 29 (111)
T PRK10220 4 PHCPKCNSEYTYEDNGMYICPECAHE 29 (111)
T ss_pred CcCCCCCCcceEcCCCeEECCcccCc
Confidence 34888887765332 33444555553
No 302
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=23.89 E-value=49 Score=21.15 Aligned_cols=17 Identities=18% Similarity=0.565 Sum_probs=13.0
Q ss_pred CCCCcccccCCcCCCCC
Q 029206 149 HSSCPTCRRSLLDQPTS 165 (197)
Q Consensus 149 ~~~CP~CR~~v~~~~~~ 165 (197)
|+.|++|-+.+.++...
T Consensus 8 H~HC~VCg~aIp~de~~ 24 (64)
T COG4068 8 HRHCVVCGKAIPPDEQV 24 (64)
T ss_pred CccccccCCcCCCccch
Confidence 56799999998776543
No 303
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=23.81 E-value=22 Score=22.17 Aligned_cols=10 Identities=30% Similarity=0.982 Sum_probs=4.5
Q ss_pred CCcccccCCc
Q 029206 151 SCPTCRRSLL 160 (197)
Q Consensus 151 ~CP~CR~~v~ 160 (197)
+||+|...+.
T Consensus 26 tCP~C~a~~~ 35 (54)
T PF09237_consen 26 TCPICGAVIR 35 (54)
T ss_dssp E-TTT--EES
T ss_pred CCCcchhhcc
Confidence 4888876653
No 304
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=23.60 E-value=30 Score=33.53 Aligned_cols=45 Identities=18% Similarity=0.431 Sum_probs=28.2
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhC------CCCCccccc
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS------HSSCPTCRR 157 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~------~~~CP~CR~ 157 (197)
...|..|.... ....-+.+.|+|.+|-.|++.|.-+ -..|+.|+.
T Consensus 229 ~~mC~~C~~tl--fn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~ 279 (889)
T KOG1356|consen 229 REMCDRCETTL--FNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWL 279 (889)
T ss_pred chhhhhhcccc--cceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHH
Confidence 34587886442 1123345569999999999999511 123777764
No 305
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=23.53 E-value=2.1e+02 Score=21.84 Aligned_cols=9 Identities=0% Similarity=0.006 Sum_probs=3.9
Q ss_pred chHHHHHHH
Q 029206 38 DTNMVIILA 46 (197)
Q Consensus 38 ~~~~~iil~ 46 (197)
++.+|.++.
T Consensus 9 ~~~~w~~i~ 17 (167)
T PRK14475 9 NPEFWVGAG 17 (167)
T ss_pred chHHHHHHH
Confidence 334554433
No 306
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=23.47 E-value=2.3e+02 Score=26.08 Aligned_cols=14 Identities=21% Similarity=0.486 Sum_probs=9.8
Q ss_pred ccH-hHHHHHHhCCC
Q 029206 137 FHV-RCIDTWLMSHS 150 (197)
Q Consensus 137 FH~-~Ci~~Wl~~~~ 150 (197)
||. .++-.||+.+.
T Consensus 289 fh~kGsL~dyL~~nt 303 (534)
T KOG3653|consen 289 FHPKGSLCDYLKANT 303 (534)
T ss_pred eccCCcHHHHHHhcc
Confidence 554 58888887653
No 307
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=22.65 E-value=75 Score=26.34 Aligned_cols=30 Identities=13% Similarity=0.277 Sum_probs=19.9
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHh
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVR 140 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~ 140 (197)
......|+.|-. ........+.|||.+|++
T Consensus 306 ~~tS~~C~~cg~---~~~r~~~C~~cg~~~~rD 335 (364)
T COG0675 306 YYTSKTCPCCGH---LSGRLFKCPRCGFVHDRD 335 (364)
T ss_pred CCCcccccccCC---ccceeEECCCCCCeehhh
Confidence 344567999977 223344555699999987
No 308
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=22.32 E-value=1.3e+02 Score=20.96 Aligned_cols=32 Identities=9% Similarity=0.100 Sum_probs=15.5
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 029206 32 SNEANFDTNMVIILAALLCALICALGLNSIVR 63 (197)
Q Consensus 32 ~~~~~~~~~~~iil~~~~~~~i~~l~i~~~~~ 63 (197)
+++..|.....+++.+++.+.++-+...++++
T Consensus 29 ss~~~ws~vv~v~i~~lvaVg~~YL~y~~fLk 60 (91)
T PF01708_consen 29 SSGLPWSRVVEVAIFTLVAVGCLYLAYTWFLK 60 (91)
T ss_pred CCCCcceeEeeeeehHHHHHHHHHHHHHHHHH
Confidence 33444554444555555555554444444444
No 309
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=22.29 E-value=28 Score=32.12 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=45.2
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCc
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
......|.+|+..+....+...+..|.|-+...|+..|=.....|+.|++.+.
T Consensus 257 q~~~~~~~~~~~~~~~~eqk~l~~~~~~~~g~tsl~~e~~~~~v~~~~~tk~~ 309 (553)
T KOG4430|consen 257 QENKNACGLCLSEADAKEQKGLEGNNQRQTGATSLMEEEAVESVCPLRVTKVR 309 (553)
T ss_pred hhcccchhhchhhHhHHHhhhhhhcccchhhhhhhhhhhhhhhhhhccccccc
Confidence 34456799999998888888888767899999999999888899999988774
No 310
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=22.27 E-value=1e+02 Score=26.13 Aligned_cols=16 Identities=19% Similarity=0.092 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHhhhcc
Q 029206 55 ALGLNSIVRCALRCSR 70 (197)
Q Consensus 55 ~l~i~~~~~~~~r~~r 70 (197)
++.+++++.+.+-++|
T Consensus 270 il~vvliiLYiWlyrr 285 (295)
T TIGR01478 270 ILTVVLIILYIWLYRR 285 (295)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333333344443433
No 311
>PTZ00370 STEVOR; Provisional
Probab=21.66 E-value=1.1e+02 Score=26.04 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhhhccc
Q 029206 53 ICALGLNSIVRCALRCSRR 71 (197)
Q Consensus 53 i~~l~i~~~~~~~~r~~rr 71 (197)
++++.+++++.+.+-++||
T Consensus 264 llil~vvliilYiwlyrrR 282 (296)
T PTZ00370 264 LLILAVVLIILYIWLYRRR 282 (296)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3333344444444444433
No 312
>KOG4021 consensus Mitochondrial ribosomal protein S18b [Translation, ribosomal structure and biogenesis]
Probab=21.60 E-value=44 Score=26.71 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=14.8
Q ss_pred cHhHHHHHHh-CCCCCcccccCC
Q 029206 138 HVRCIDTWLM-SHSSCPTCRRSL 159 (197)
Q Consensus 138 H~~Ci~~Wl~-~~~~CP~CR~~v 159 (197)
-+.||++--. ...-||+||-..
T Consensus 96 RktCIrkn~~~~gnpCPICRDey 118 (239)
T KOG4021|consen 96 RKTCIRKNGRFLGNPCPICRDEY 118 (239)
T ss_pred hhHHHhhcCeecCCCCCccccce
Confidence 4678877432 345699999865
No 313
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=21.60 E-value=1.5e+02 Score=22.50 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=20.7
Q ss_pred hcCCcccccCCCCCCCCCcccccccccccCCceEEc
Q 029206 95 RQIPVAVYGAAGVKIKATDCAICLVDFMDGEKVRVL 130 (197)
Q Consensus 95 ~~lp~~~~~~~~~~~~~~~C~ICl~~~~~~~~i~~l 130 (197)
++.-...|+.=+...++...+++|=+ ..++.+...
T Consensus 81 ~kvgvvRYnAF~dmGg~LSFslAlLD-~~~nGvVlt 115 (151)
T PF14584_consen 81 QKVGVVRYNAFEDMGGDLSFSLALLD-DNNNGVVLT 115 (151)
T ss_pred ceEEEEEccCcccccccceeeeEEEe-CCCCEEEEE
Confidence 34445566665666777778888766 334444333
No 314
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=21.35 E-value=54 Score=30.95 Aligned_cols=45 Identities=18% Similarity=0.449 Sum_probs=27.0
Q ss_pred CcccccccccccCCceEEcCCCCCcccH--hHHHHHHh-----CCC--CCcccccCCcCCCC
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHGFHV--RCIDTWLM-----SHS--SCPTCRRSLLDQPT 164 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~FH~--~Ci~~Wl~-----~~~--~CP~CR~~v~~~~~ 164 (197)
..|+|+.-. ..+| |.+..|+ .|+|.-+. .+. .||+|.+...-+..
T Consensus 307 L~CPl~~~R-------m~~P-~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l 360 (636)
T KOG2169|consen 307 LNCPLSKMR-------MSLP-ARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGL 360 (636)
T ss_pred ecCCcccce-------eecC-CcccccccceecchhhhHHhccCCCeeeCccCCccccccch
Confidence 357777533 2455 7777666 78876441 122 39999886644433
No 315
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=20.95 E-value=2e+02 Score=25.44 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=14.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029206 36 NFDTNMVIILAALLCALICALGLNSIVRCALR 67 (197)
Q Consensus 36 ~~~~~~~iil~~~~~~~i~~l~i~~~~~~~~r 67 (197)
++.....+.++++..+.++.+++.++..+..+
T Consensus 300 ~~~~~i~~~la~i~~i~l~~~vvR~vR~~~~h 331 (374)
T PF01528_consen 300 NLHTGIAINLAVIAIICLIMMVVRLVRAFLYH 331 (374)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444445555554444444444333333333
No 316
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=20.88 E-value=1.9e+02 Score=22.07 Aligned_cols=23 Identities=17% Similarity=0.353 Sum_probs=10.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHH
Q 029206 36 NFDTNMVIILAALLCALICALGL 58 (197)
Q Consensus 36 ~~~~~~~iil~~~~~~~i~~l~i 58 (197)
+|-..+.++++=.+.+++.++++
T Consensus 2 efl~~yglFlaK~vTvVvaI~~v 24 (155)
T PF08496_consen 2 EFLYEYGLFLAKIVTVVVAILAV 24 (155)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555655444444433333
No 317
>PF05279 Asp-B-Hydro_N: Aspartyl beta-hydroxylase N-terminal region; InterPro: IPR007943 This domain is found in members of the junctin, junctate and aspartyl beta-hydroxylase protein families. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin []. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins []. This domain is also found in several eukaryotic triadin proteins. Triadin is a ryanodine receptor and calsequestrin binding protein located in junctional sarcoplasmic reticulum of striated muscles [].; GO: 0016020 membrane
Probab=20.80 E-value=1.1e+02 Score=25.35 Aligned_cols=23 Identities=9% Similarity=0.036 Sum_probs=11.0
Q ss_pred CCCCCCCchHHHHHHHHHHHHHH
Q 029206 31 VSNEANFDTNMVIILAALLCALI 53 (197)
Q Consensus 31 ~~~~~~~~~~~~iil~~~~~~~i 53 (197)
..++.+|-+|++++-.+.+...+
T Consensus 6 ~l~G~~~~~~~~~~~~~~~~~~~ 28 (243)
T PF05279_consen 6 GLSGSSFFTWFLVLALLGVWSSV 28 (243)
T ss_pred CCCCCchHHHHHHHHHHHHHHhh
Confidence 34555666555554443333333
No 318
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=20.67 E-value=39 Score=21.42 Aligned_cols=33 Identities=27% Similarity=0.591 Sum_probs=12.4
Q ss_pred CCCcccccCCcCCCCCC-c------------ccccccccCCCCCCC
Q 029206 150 SSCPTCRRSLLDQPTSS-D------------AAEMDSEIRHPGNPP 182 (197)
Q Consensus 150 ~~CP~CR~~v~~~~~~~-~------------~~~~~~~~~~p~~~~ 182 (197)
..||.|++.+.....+. - -.+..+++.+|+.+.
T Consensus 3 v~CP~C~k~~~~~~~n~~rPFCS~RCk~iDLg~W~~e~Y~Ip~~~~ 48 (57)
T PF03884_consen 3 VKCPICGKPVEWSPENPFRPFCSERCKLIDLGRWANEEYRIPGEPD 48 (57)
T ss_dssp EE-TTT--EEE-SSSSS--SSSSHHHHHHHHS-SSSSS----SSS-
T ss_pred ccCCCCCCeecccCCCCcCCcccHhhcccCHHHHhcCCcccCCCCC
Confidence 36999999887633321 1 123455667776665
No 319
>PF03554 Herpes_UL73: UL73 viral envelope glycoprotein ; InterPro: IPR005211 This entry represents a conserved region found in a number of viral proteins: BLRF1, U46, 53, and UL73, collectively known as glycoprotein N. These UL73-like envelope glycoproteins, which associate in a high molecular mass complex with their counterpart protein gM, induce neutralizing antibody responses in the host. These glycoproteins are highly polymorphic, particularly in the N-terminal region [].; GO: 0019031 viral envelope
Probab=20.27 E-value=2.5e+02 Score=19.10 Aligned_cols=15 Identities=20% Similarity=0.436 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHhh
Q 029206 53 ICALGLNSIVRCALR 67 (197)
Q Consensus 53 i~~l~i~~~~~~~~r 67 (197)
++..++++...|+.+
T Consensus 61 ~~A~~vyLry~Cf~~ 75 (82)
T PF03554_consen 61 LCAFCVYLRYLCFQK 75 (82)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455555566543
No 320
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=20.11 E-value=61 Score=23.26 Aligned_cols=13 Identities=23% Similarity=0.708 Sum_probs=9.0
Q ss_pred CCCcccccCCcCC
Q 029206 150 SSCPTCRRSLLDQ 162 (197)
Q Consensus 150 ~~CP~CR~~v~~~ 162 (197)
-+||.|-..+...
T Consensus 27 ivCP~CG~~~~~~ 39 (108)
T PF09538_consen 27 IVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCCCccCcc
Confidence 3599997776554
No 321
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=20.04 E-value=1.4e+02 Score=22.54 Aligned_cols=15 Identities=13% Similarity=0.257 Sum_probs=7.4
Q ss_pred CchHHHHHHHHHHHH
Q 029206 37 FDTNMVIILAALLCA 51 (197)
Q Consensus 37 ~~~~~~iil~~~~~~ 51 (197)
|+..+|.++.+++++
T Consensus 1 ~~~~~w~~i~f~i~l 15 (159)
T PRK09173 1 MDATFWAFVGLVLFL 15 (159)
T ss_pred CCchHHHHHHHHHHH
Confidence 345566555544433
Done!