Query 029206
Match_columns 197
No_of_seqs 175 out of 1826
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 14:55:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029206.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029206hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x4j_A Ring finger protein 38; 99.7 8.2E-19 2.8E-23 117.8 4.5 69 93-162 5-73 (75)
2 2l0b_A E3 ubiquitin-protein li 99.7 2E-18 6.9E-23 120.3 6.6 76 85-161 13-89 (91)
3 1iym_A EL5; ring-H2 finger, ub 99.7 3.8E-17 1.3E-21 103.0 4.4 51 110-160 4-54 (55)
4 2ep4_A Ring finger protein 24; 99.7 1.3E-16 4.3E-21 106.7 5.8 56 108-164 12-67 (74)
5 2kiz_A E3 ubiquitin-protein li 99.6 2E-16 7E-21 104.2 6.2 55 108-163 11-65 (69)
6 2ect_A Ring finger protein 126 99.6 1.7E-16 5.9E-21 107.0 5.9 57 108-165 12-68 (78)
7 2ecl_A Ring-box protein 2; RNF 99.6 2.3E-16 8E-21 107.6 4.3 52 110-161 14-76 (81)
8 1v87_A Deltex protein 2; ring- 99.6 3.7E-16 1.3E-20 112.8 5.5 61 110-171 24-104 (114)
9 2ecm_A Ring finger and CHY zin 99.6 2.1E-15 7.3E-20 94.8 4.2 50 110-160 4-54 (55)
10 3ng2_A RNF4, snurf, ring finge 99.5 3.2E-15 1.1E-19 98.8 3.7 53 109-162 8-64 (71)
11 2ea6_A Ring finger protein 4; 99.5 5.3E-15 1.8E-19 97.0 4.3 53 108-161 12-68 (69)
12 3dpl_R Ring-box protein 1; ubi 99.5 7.7E-15 2.6E-19 105.0 5.1 51 109-160 35-100 (106)
13 2xeu_A Ring finger protein 4; 99.5 4.9E-15 1.7E-19 95.7 3.4 52 110-162 2-57 (64)
14 2d8s_A Cellular modulator of i 99.5 1.4E-14 4.8E-19 98.5 5.1 54 108-163 12-72 (80)
15 2ecn_A Ring finger protein 141 99.5 1.6E-14 5.6E-19 95.2 3.0 51 108-163 12-62 (70)
16 1chc_A Equine herpes virus-1 r 99.5 4.6E-14 1.6E-18 92.5 4.9 49 110-161 4-52 (68)
17 2djb_A Polycomb group ring fin 99.4 1.1E-13 3.7E-18 91.9 5.4 54 108-164 12-65 (72)
18 2d8t_A Dactylidin, ring finger 99.4 4.8E-14 1.7E-18 93.3 3.4 50 108-161 12-61 (71)
19 2ct2_A Tripartite motif protei 99.4 1.9E-13 6.7E-18 93.7 5.7 54 108-162 12-69 (88)
20 4a0k_B E3 ubiquitin-protein li 99.4 2E-14 6.8E-19 104.4 0.5 52 109-161 46-112 (117)
21 2ecy_A TNF receptor-associated 99.4 6.8E-13 2.3E-17 86.5 5.6 50 109-162 13-63 (66)
22 2ct0_A Non-SMC element 1 homol 99.4 4.8E-13 1.6E-17 89.4 4.8 53 109-164 13-67 (74)
23 2csy_A Zinc finger protein 183 99.4 6.5E-13 2.2E-17 90.0 5.1 49 108-160 12-60 (81)
24 2yur_A Retinoblastoma-binding 99.4 8.8E-13 3E-17 88.0 5.6 53 108-163 12-66 (74)
25 4ap4_A E3 ubiquitin ligase RNF 99.3 3.7E-13 1.3E-17 98.7 3.8 53 109-162 5-61 (133)
26 2ysl_A Tripartite motif-contai 99.3 1.4E-12 4.7E-17 86.4 5.7 51 108-162 17-70 (73)
27 4ayc_A E3 ubiquitin-protein li 99.3 5.8E-13 2E-17 99.3 3.3 47 111-161 53-99 (138)
28 1g25_A CDK-activating kinase a 99.3 1.4E-12 4.6E-17 84.7 4.5 51 111-162 3-56 (65)
29 2ecw_A Tripartite motif-contai 99.3 3.9E-12 1.3E-16 86.3 5.3 50 108-161 16-71 (85)
30 4ap4_A E3 ubiquitin ligase RNF 99.3 1.9E-12 6.3E-17 95.0 3.7 54 108-162 69-126 (133)
31 1t1h_A Gspef-atpub14, armadill 99.3 4E-12 1.4E-16 85.4 4.8 50 109-162 6-56 (78)
32 3lrq_A E3 ubiquitin-protein li 99.3 2.2E-12 7.4E-17 91.1 3.5 48 111-161 22-70 (100)
33 2ysj_A Tripartite motif-contai 99.3 8E-12 2.7E-16 80.5 5.5 44 108-155 17-63 (63)
34 2ecv_A Tripartite motif-contai 99.3 4.7E-12 1.6E-16 85.9 4.6 50 108-161 16-71 (85)
35 2y43_A E3 ubiquitin-protein li 99.2 3.5E-12 1.2E-16 89.6 3.9 48 111-161 22-69 (99)
36 2egp_A Tripartite motif-contai 99.2 2.3E-12 7.7E-17 86.6 2.4 50 108-161 9-65 (79)
37 2ecj_A Tripartite motif-contai 99.2 7E-12 2.4E-16 79.2 4.3 44 108-155 12-58 (58)
38 2ckl_A Polycomb group ring fin 99.2 5.9E-12 2E-16 89.8 4.4 49 111-162 15-63 (108)
39 3ztg_A E3 ubiquitin-protein li 99.2 1.6E-11 5.5E-16 84.9 5.4 51 108-161 10-62 (92)
40 2ckl_B Ubiquitin ligase protei 99.2 1.2E-11 4.1E-16 94.7 4.4 48 111-161 54-102 (165)
41 3fl2_A E3 ubiquitin-protein li 99.2 1.2E-11 4.1E-16 90.4 4.0 47 111-161 52-99 (124)
42 1e4u_A Transcriptional repress 99.2 5.6E-11 1.9E-15 80.2 6.0 56 108-164 8-65 (78)
43 1jm7_A BRCA1, breast cancer ty 99.1 2.7E-11 9.2E-16 86.6 4.6 48 111-162 21-71 (112)
44 3hct_A TNF receptor-associated 99.1 2.1E-11 7.3E-16 88.4 3.6 50 108-161 15-65 (118)
45 1z6u_A NP95-like ring finger p 99.1 4.8E-11 1.6E-15 90.2 4.1 48 111-162 78-126 (150)
46 3l11_A E3 ubiquitin-protein li 99.1 2.3E-11 7.9E-16 87.6 1.5 47 110-160 14-61 (115)
47 1rmd_A RAG1; V(D)J recombinati 99.1 5.4E-11 1.9E-15 85.8 3.0 48 111-162 23-71 (116)
48 1bor_A Transcription factor PM 99.1 5.4E-11 1.9E-15 75.0 2.5 48 109-163 4-51 (56)
49 2vje_A E3 ubiquitin-protein li 99.1 1E-10 3.4E-15 75.9 3.6 48 110-160 7-56 (64)
50 2y1n_A E3 ubiquitin-protein li 99.0 2.4E-10 8.2E-15 98.3 5.1 47 111-161 332-379 (389)
51 3knv_A TNF receptor-associated 99.0 1.2E-10 4E-15 87.2 2.6 50 109-162 29-79 (141)
52 2vje_B MDM4 protein; proto-onc 99.0 2.2E-10 7.5E-15 74.0 3.5 50 109-160 5-55 (63)
53 3k1l_B Fancl; UBC, ring, RWD, 99.0 1E-10 3.6E-15 98.4 1.8 53 108-160 305-372 (381)
54 2kr4_A Ubiquitin conjugation f 99.0 6E-10 2E-14 76.2 4.7 48 110-161 13-60 (85)
55 2kre_A Ubiquitin conjugation f 98.9 4.5E-10 1.5E-14 79.3 3.7 48 110-161 28-75 (100)
56 1wgm_A Ubiquitin conjugation f 98.9 6.9E-10 2.4E-14 78.0 4.2 49 110-162 21-70 (98)
57 1jm7_B BARD1, BRCA1-associated 98.9 3E-10 1E-14 82.1 2.3 45 111-161 22-67 (117)
58 1vyx_A ORF K3, K3RING; zinc-bi 98.9 7.7E-10 2.6E-14 70.8 3.6 48 109-160 4-58 (60)
59 4ic3_A E3 ubiquitin-protein li 98.8 9.8E-10 3.4E-14 73.1 2.3 43 111-161 24-67 (74)
60 3hcs_A TNF receptor-associated 98.8 1.4E-09 4.9E-14 83.4 3.1 51 108-162 15-66 (170)
61 1wim_A KIAA0161 protein; ring 98.8 2.5E-09 8.5E-14 74.3 2.9 48 110-158 4-61 (94)
62 2yu4_A E3 SUMO-protein ligase 98.7 4E-09 1.4E-13 73.3 3.0 47 109-158 5-59 (94)
63 2c2l_A CHIP, carboxy terminus 98.7 7.4E-09 2.5E-13 84.6 3.5 49 109-161 206-255 (281)
64 2ea5_A Cell growth regulator w 98.7 1.8E-08 6.2E-13 65.9 4.6 46 108-161 12-58 (68)
65 2ecg_A Baculoviral IAP repeat- 98.7 8.2E-09 2.8E-13 68.7 2.6 43 111-161 25-68 (75)
66 2f42_A STIP1 homology and U-bo 98.5 3.2E-08 1.1E-12 76.7 3.2 49 109-161 104-153 (179)
67 2yho_A E3 ubiquitin-protein li 98.5 2.3E-08 7.8E-13 67.4 1.9 43 111-161 18-61 (79)
68 2bay_A PRE-mRNA splicing facto 98.5 4.5E-08 1.5E-12 62.7 1.6 48 112-162 4-51 (61)
69 3t6p_A Baculoviral IAP repeat- 98.4 5.7E-08 1.9E-12 82.6 1.1 43 110-160 294-337 (345)
70 3htk_C E3 SUMO-protein ligase 98.4 1.7E-07 5.9E-12 76.3 3.5 49 110-161 180-232 (267)
71 3vk6_A E3 ubiquitin-protein li 98.3 4E-07 1.4E-11 63.3 3.9 46 113-161 3-49 (101)
72 3nw0_A Non-structural maintena 98.2 2.2E-06 7.5E-11 69.2 5.5 52 110-164 179-232 (238)
73 2lri_C Autoimmune regulator; Z 96.3 0.0047 1.6E-07 39.7 4.1 47 109-159 10-60 (66)
74 2ko5_A Ring finger protein Z; 96.1 0.0083 2.8E-07 41.0 4.6 52 108-165 25-77 (99)
75 2jun_A Midline-1; B-BOX, TRIM, 95.6 0.0093 3.2E-07 41.0 3.3 34 111-145 3-36 (101)
76 1wil_A KIAA1045 protein; ring 94.6 0.037 1.3E-06 37.0 3.9 36 108-145 12-47 (89)
77 1we9_A PHD finger family prote 93.5 0.02 7E-07 36.1 0.9 49 109-157 4-57 (64)
78 3lqh_A Histone-lysine N-methyl 92.8 0.045 1.5E-06 42.1 2.0 49 111-159 2-64 (183)
79 2l5u_A Chromodomain-helicase-D 92.7 0.091 3.1E-06 32.9 3.1 47 108-158 8-58 (61)
80 3u5n_A E3 ubiquitin-protein li 91.7 0.05 1.7E-06 42.5 1.1 47 109-159 5-55 (207)
81 3o36_A Transcription intermedi 91.3 0.056 1.9E-06 41.3 1.0 46 110-159 3-52 (184)
82 1f62_A Transcription factor WS 91.3 0.092 3.2E-06 31.4 1.8 44 113-157 2-49 (51)
83 1mm2_A MI2-beta; PHD, zinc fin 91.0 0.068 2.3E-06 33.5 1.0 48 109-160 7-58 (61)
84 2yql_A PHD finger protein 21A; 90.3 0.048 1.6E-06 33.5 -0.2 46 108-157 6-55 (56)
85 1weo_A Cellulose synthase, cat 89.5 2.2 7.7E-05 28.6 7.5 56 110-165 15-74 (93)
86 2k16_A Transcription initiatio 89.3 0.098 3.4E-06 33.9 0.7 50 110-160 17-70 (75)
87 3v43_A Histone acetyltransfera 88.4 0.14 4.7E-06 36.0 1.0 45 113-157 63-111 (112)
88 2vpb_A Hpygo1, pygopus homolog 88.3 0.39 1.3E-05 30.4 3.0 34 110-143 7-41 (65)
89 2knc_A Integrin alpha-IIB; tra 88.1 1.2 4.2E-05 27.1 5.0 30 38-67 10-39 (54)
90 2l8s_A Integrin alpha-1; trans 87.7 1.5 5.2E-05 26.6 5.2 30 38-67 7-36 (54)
91 2puy_A PHD finger protein 21A; 87.6 0.057 2E-06 33.6 -1.3 47 110-160 4-54 (60)
92 1fp0_A KAP-1 corepressor; PHD 87.1 0.45 1.5E-05 32.1 2.9 47 108-158 22-72 (88)
93 2ysm_A Myeloid/lymphoid or mix 87.0 0.21 7.2E-06 34.8 1.3 38 109-147 5-42 (111)
94 2ku3_A Bromodomain-containing 87.0 0.25 8.6E-06 31.9 1.6 50 108-157 13-65 (71)
95 2e6s_A E3 ubiquitin-protein li 86.7 0.12 4.1E-06 34.0 -0.2 44 113-157 28-76 (77)
96 1xwh_A Autoimmune regulator; P 86.6 0.18 6.1E-06 32.0 0.6 46 109-158 6-55 (66)
97 1wep_A PHF8; structural genomi 86.5 0.51 1.8E-05 30.8 2.9 48 111-159 12-64 (79)
98 3asl_A E3 ubiquitin-protein li 86.5 0.13 4.6E-06 33.0 0.0 44 113-157 20-68 (70)
99 2lbm_A Transcriptional regulat 86.0 1.1 3.9E-05 32.8 4.8 46 108-157 60-116 (142)
100 2k1a_A Integrin alpha-IIB; sin 85.5 2 6.8E-05 24.7 4.7 29 38-66 8-36 (42)
101 2kgg_A Histone demethylase jar 85.4 0.3 1E-05 29.3 1.2 44 113-156 4-52 (52)
102 2l43_A N-teminal domain from h 84.9 0.34 1.2E-05 32.5 1.5 51 109-159 23-76 (88)
103 2klu_A T-cell surface glycopro 84.3 4.2 0.00014 25.7 6.1 14 53-66 19-32 (70)
104 3ql9_A Transcriptional regulat 84.2 1.6 5.5E-05 31.4 4.8 47 108-158 54-111 (129)
105 2lv9_A Histone-lysine N-methyl 83.9 0.4 1.4E-05 32.8 1.5 44 112-157 29-75 (98)
106 3shb_A E3 ubiquitin-protein li 83.4 0.22 7.6E-06 32.7 -0.0 44 113-157 28-76 (77)
107 2yt5_A Metal-response element- 83.3 0.72 2.5E-05 28.9 2.4 51 109-159 4-62 (66)
108 1z60_A TFIIH basal transcripti 82.8 0.87 3E-05 28.3 2.6 42 112-155 16-58 (59)
109 2ro1_A Transcription intermedi 82.5 0.28 9.6E-06 37.7 0.2 44 111-158 2-49 (189)
110 3ask_A E3 ubiquitin-protein li 82.5 0.26 9E-06 39.0 0.1 44 113-157 176-224 (226)
111 2xb1_A Pygopus homolog 2, B-ce 82.0 0.7 2.4E-05 32.0 2.1 49 111-159 3-62 (105)
112 2ri7_A Nucleosome-remodeling f 82.0 0.31 1.1E-05 36.6 0.3 48 110-158 7-59 (174)
113 2e6r_A Jumonji/ARID domain-con 81.9 0.19 6.5E-06 34.1 -0.8 49 109-158 14-66 (92)
114 1wev_A Riken cDNA 1110020M19; 81.1 0.25 8.7E-06 33.2 -0.4 50 111-160 16-74 (88)
115 1weu_A Inhibitor of growth fam 78.5 1.8 6.2E-05 29.2 3.2 45 110-159 35-86 (91)
116 3v43_A Histone acetyltransfera 77.9 3.5 0.00012 28.6 4.7 33 111-143 5-42 (112)
117 4gne_A Histone-lysine N-methyl 77.7 2.6 9E-05 29.3 4.0 48 108-161 12-65 (107)
118 1wem_A Death associated transc 77.5 1.1 3.7E-05 28.9 1.8 46 112-159 17-71 (76)
119 1wen_A Inhibitor of growth fam 77.0 3 0.0001 26.7 3.8 45 110-159 15-66 (71)
120 2kwj_A Zinc finger protein DPF 74.9 0.73 2.5E-05 32.3 0.4 34 112-145 2-41 (114)
121 1y02_A CARP2, FYVE-ring finger 74.9 0.46 1.6E-05 33.9 -0.7 49 111-159 19-67 (120)
122 1wfk_A Zinc finger, FYVE domai 74.7 2.8 9.7E-05 27.9 3.3 54 108-161 6-66 (88)
123 2l2t_A Receptor tyrosine-prote 74.3 7.2 0.00025 22.6 4.5 9 60-68 28-36 (44)
124 1z2q_A LM5-1; membrane protein 73.7 2.6 8.9E-05 27.7 3.0 36 110-145 20-55 (84)
125 1vfy_A Phosphatidylinositol-3- 73.7 2.6 8.9E-05 26.9 2.9 33 112-144 12-44 (73)
126 3t7l_A Zinc finger FYVE domain 73.2 2.4 8.1E-05 28.4 2.7 49 111-159 20-74 (90)
127 1joc_A EEA1, early endosomal a 73.1 2.3 7.7E-05 30.3 2.7 35 111-145 69-103 (125)
128 2yw8_A RUN and FYVE domain-con 72.7 2.8 9.6E-05 27.4 2.9 36 110-145 18-53 (82)
129 1zbd_B Rabphilin-3A; G protein 72.5 2.1 7.3E-05 30.9 2.5 35 109-143 53-88 (134)
130 1wew_A DNA-binding family prot 72.2 1.7 5.7E-05 28.3 1.7 47 111-159 16-73 (78)
131 3o70_A PHD finger protein 13; 70.3 0.95 3.3E-05 28.8 0.1 48 108-157 16-66 (68)
132 1x4u_A Zinc finger, FYVE domai 69.9 3.5 0.00012 27.1 2.9 35 110-144 13-47 (84)
133 2klu_A T-cell surface glycopro 69.1 5.5 0.00019 25.2 3.4 28 43-70 12-40 (70)
134 2rsd_A E3 SUMO-protein ligase 68.9 0.46 1.6E-05 30.2 -1.6 45 112-157 11-64 (68)
135 2ysm_A Myeloid/lymphoid or mix 68.7 0.74 2.5E-05 32.0 -0.7 45 113-158 56-104 (111)
136 3mpx_A FYVE, rhogef and PH dom 68.4 1 3.6E-05 38.3 0.0 49 111-159 375-430 (434)
137 3a1b_A DNA (cytosine-5)-methyl 68.0 5.2 0.00018 29.8 3.7 45 109-157 77-133 (159)
138 1dvp_A HRS, hepatocyte growth 67.9 2.7 9.1E-05 32.7 2.3 35 111-145 161-195 (220)
139 3zyq_A Hepatocyte growth facto 66.2 3.2 0.00011 32.5 2.4 35 111-145 164-198 (226)
140 2gmg_A Hypothetical protein PF 66.0 1.4 4.9E-05 30.5 0.3 27 132-163 72-98 (105)
141 3m62_A Ubiquitin conjugation f 65.7 4.5 0.00016 38.5 3.7 47 111-161 891-938 (968)
142 2kwj_A Zinc finger protein DPF 63.1 0.49 1.7E-05 33.2 -2.6 46 113-159 60-109 (114)
143 3c6w_A P28ING5, inhibitor of g 62.5 2.4 8.2E-05 26.0 0.8 42 111-157 9-57 (59)
144 2pv0_B DNA (cytosine-5)-methyl 62.3 6.5 0.00022 33.5 3.7 45 109-157 91-147 (386)
145 2zet_C Melanophilin; complex, 61.8 4.9 0.00017 29.7 2.6 48 109-157 66-116 (153)
146 2vnf_A ING 4, P29ING4, inhibit 61.0 2.4 8.2E-05 26.1 0.6 42 111-157 10-58 (60)
147 2l2t_A Receptor tyrosine-prote 60.8 22 0.00074 20.5 4.8 22 48-69 20-41 (44)
148 2knc_B Integrin beta-3; transm 60.7 7.4 0.00025 25.4 3.0 23 42-64 12-34 (79)
149 2cs3_A Protein C14ORF4, MY039 60.0 5.3 0.00018 26.3 2.2 39 110-149 14-53 (93)
150 2o35_A Hypothetical protein DU 58.1 4.2 0.00014 27.8 1.5 11 137-147 43-53 (105)
151 1x4l_A Skeletal muscle LIM-pro 58.1 8.9 0.0003 23.7 3.1 40 111-160 5-46 (72)
152 3fyb_A Protein of unknown func 57.8 4.3 0.00015 27.8 1.5 11 137-147 42-52 (104)
153 1wee_A PHD finger family prote 55.9 5.1 0.00017 25.4 1.6 47 111-158 16-66 (72)
154 3i2d_A E3 SUMO-protein ligase 55.7 11 0.00037 31.9 4.0 45 112-159 250-298 (371)
155 4fo9_A E3 SUMO-protein ligase 53.1 13 0.00043 31.4 4.0 45 112-159 216-264 (360)
156 1zfo_A LAsp-1; LIM domain, zin 52.9 5.3 0.00018 21.0 1.1 28 112-142 4-31 (31)
157 3f6q_B LIM and senescent cell 51.3 9 0.00031 23.4 2.2 42 111-162 11-52 (72)
158 3o7a_A PHD finger protein 13 v 51.2 2.3 7.9E-05 25.3 -0.6 41 116-157 8-51 (52)
159 2g6q_A Inhibitor of growth pro 50.8 3.2 0.00011 25.7 -0.0 42 111-157 11-59 (62)
160 2jvx_A NF-kappa-B essential mo 47.9 3.7 0.00013 21.4 -0.0 13 150-162 4-16 (28)
161 1wyh_A SLIM 2, skeletal muscle 47.3 17 0.00058 22.2 3.1 41 111-161 5-45 (72)
162 3kv5_D JMJC domain-containing 46.8 5.6 0.00019 34.9 0.9 46 112-158 38-88 (488)
163 1x61_A Thyroid receptor intera 46.6 26 0.00088 21.4 3.9 40 111-160 5-44 (72)
164 2d8v_A Zinc finger FYVE domain 46.1 19 0.00064 22.7 3.0 30 110-144 7-37 (67)
165 2cu8_A Cysteine-rich protein 2 45.6 25 0.00087 21.7 3.8 41 110-161 8-48 (76)
166 1g47_A Pinch protein; LIM doma 44.1 21 0.00073 22.1 3.2 42 110-161 10-51 (77)
167 1x4k_A Skeletal muscle LIM-pro 44.0 19 0.00063 22.0 2.9 41 111-161 5-45 (72)
168 1zza_A Stannin, AG8_1; helix, 43.5 62 0.0021 20.7 5.8 30 38-67 9-39 (90)
169 1iml_A CRIP, cysteine rich int 43.3 15 0.00051 22.9 2.3 25 114-141 3-27 (76)
170 1x63_A Skeletal muscle LIM-pro 42.3 29 0.00099 21.7 3.7 42 111-162 15-56 (82)
171 2dj7_A Actin-binding LIM prote 42.1 23 0.00078 22.5 3.1 40 110-160 14-53 (80)
172 2k9j_B Integrin beta-3; transm 41.3 48 0.0016 18.8 4.6 12 41-52 10-21 (43)
173 2pk7_A Uncharacterized protein 40.8 6 0.00021 25.1 0.1 19 143-161 2-20 (69)
174 1afo_A Glycophorin A; integral 40.2 48 0.0017 18.5 4.1 18 40-57 12-29 (40)
175 2co8_A NEDD9 interacting prote 40.1 35 0.0012 21.6 3.8 42 109-161 13-54 (82)
176 2jp3_A FXYD domain-containing 40.0 68 0.0023 20.1 4.9 28 35-62 10-37 (67)
177 3kqi_A GRC5, PHD finger protei 39.5 18 0.00063 22.9 2.3 45 114-158 12-61 (75)
178 1x68_A FHL5 protein; four-and- 38.5 31 0.0011 21.3 3.3 40 111-160 5-46 (76)
179 2d8x_A Protein pinch; LIM doma 38.4 24 0.00083 21.4 2.7 40 111-162 5-44 (70)
180 3mjh_B Early endosome antigen 38.1 3.1 0.00011 22.7 -1.4 15 111-125 5-19 (34)
181 2jmi_A Protein YNG1, ING1 homo 37.9 7.5 0.00026 26.0 0.2 43 110-157 25-75 (90)
182 2jny_A Uncharacterized BCR; st 37.2 5.9 0.0002 25.1 -0.4 20 142-161 3-22 (67)
183 2lcq_A Putative toxin VAPC6; P 36.2 12 0.00041 27.4 1.2 25 129-159 134-158 (165)
184 1x62_A C-terminal LIM domain p 35.2 19 0.00064 22.7 1.9 39 110-160 14-52 (79)
185 2jp3_A FXYD domain-containing 35.1 59 0.002 20.4 4.0 32 40-71 19-50 (67)
186 2rgt_A Fusion of LIM/homeobox 34.8 24 0.00082 25.7 2.6 38 113-160 67-104 (169)
187 1a7i_A QCRP2 (LIM1); LIM domai 34.3 9.5 0.00032 24.2 0.3 41 111-162 7-47 (81)
188 2zxe_G FXYD10, phospholemman-l 33.4 52 0.0018 21.0 3.6 29 34-62 11-39 (74)
189 2jo1_A Phospholemman; FXYD1, N 33.3 93 0.0032 19.7 4.7 25 37-61 11-35 (72)
190 2jmo_A Parkin; IBR, E3 ligase, 31.3 3.5 0.00012 26.8 -2.3 14 132-145 55-68 (80)
191 3kv4_A PHD finger protein 8; e 31.1 11 0.00037 32.7 0.2 47 113-159 6-57 (447)
192 2l3k_A Rhombotin-2, linker, LI 30.4 27 0.00094 24.0 2.2 13 134-146 57-69 (123)
193 2d8y_A Eplin protein; LIM doma 30.2 45 0.0015 21.4 3.2 41 111-162 15-55 (91)
194 2ct7_A Ring finger protein 31; 28.2 5.3 0.00018 26.2 -1.8 19 128-146 44-62 (86)
195 2kpi_A Uncharacterized protein 27.9 24 0.00081 21.3 1.3 13 111-123 10-22 (56)
196 2knc_B Integrin beta-3; transm 27.7 1.2E+02 0.004 19.5 4.7 24 41-64 15-38 (79)
197 2jr6_A UPF0434 protein NMA0874 27.6 6.3 0.00021 25.0 -1.5 18 144-161 3-20 (68)
198 3pwf_A Rubrerythrin; non heme 27.2 33 0.0011 25.5 2.3 24 127-157 138-161 (170)
199 2kdx_A HYPA, hydrogenase/ureas 27.2 26 0.00087 24.3 1.5 25 129-159 75-100 (119)
200 2ehe_A Four and A half LIM dom 26.1 54 0.0019 20.4 2.9 41 111-161 15-55 (82)
201 3lb6_C IL-13, interleukin-13 r 26.1 24 0.00081 29.2 1.4 14 25-38 319-332 (380)
202 2jtn_A LIM domain-binding prot 25.9 26 0.00089 25.9 1.5 25 134-160 106-130 (182)
203 1wd2_A Ariadne-1 protein homol 25.4 23 0.00078 21.6 0.9 13 149-161 6-18 (60)
204 2cup_A Skeletal muscle LIM-pro 25.3 69 0.0024 20.7 3.5 25 134-160 53-77 (101)
205 2egq_A FHL1 protein; LIM domai 25.0 60 0.002 19.9 2.9 40 111-161 15-58 (77)
206 1m3v_A FLIN4, fusion of the LI 24.4 63 0.0021 22.1 3.2 47 113-161 34-81 (122)
207 2hf1_A Tetraacyldisaccharide-1 24.3 6.3 0.00022 25.0 -1.9 17 145-161 4-20 (68)
208 2d8z_A Four and A half LIM dom 24.2 68 0.0023 19.2 3.1 38 111-160 5-42 (70)
209 1v6g_A Actin binding LIM prote 24.2 70 0.0024 19.8 3.2 39 112-162 16-54 (81)
210 2dar_A PDZ and LIM domain prot 23.3 84 0.0029 20.0 3.5 40 110-161 24-63 (90)
211 2js4_A UPF0434 protein BB2007; 23.1 6.8 0.00023 25.0 -2.0 16 145-160 4-19 (70)
212 1x64_A Alpha-actinin-2 associa 22.3 81 0.0028 20.0 3.3 41 109-161 23-63 (89)
213 1nyp_A Pinch protein; LIM doma 22.3 67 0.0023 19.0 2.7 39 111-161 5-43 (66)
214 1yuz_A Nigerythrin; rubrythrin 21.6 49 0.0017 25.2 2.3 25 127-158 171-195 (202)
215 2l4z_A DNA endonuclease RBBP8, 21.3 65 0.0022 22.2 2.8 39 111-160 61-99 (123)
216 2csz_A Synaptotagmin-like prot 21.2 47 0.0016 21.4 1.8 34 108-141 22-56 (76)
217 2l34_A TYRO protein tyrosine k 20.9 1.1E+02 0.0037 16.3 3.2 8 57-64 22-29 (33)
218 1lko_A Rubrerythrin all-iron(I 20.8 34 0.0012 25.8 1.2 22 131-158 159-180 (191)
219 2xjy_A Rhombotin-2; oncoprotei 20.7 64 0.0022 22.0 2.7 47 112-160 30-77 (131)
220 2cor_A Pinch protein; LIM doma 20.2 1E+02 0.0035 19.1 3.4 40 110-161 14-53 (79)
221 2cur_A Skeletal muscle LIM-pro 20.2 1.1E+02 0.0037 18.1 3.4 38 111-160 5-42 (69)
No 1
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8.2e-19 Score=117.83 Aligned_cols=69 Identities=35% Similarity=0.831 Sum_probs=60.7
Q ss_pred HHhcCCcccccCCCCCCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCC
Q 029206 93 ALRQIPVAVYGAAGVKIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQ 162 (197)
Q Consensus 93 ~~~~lp~~~~~~~~~~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~ 162 (197)
.++++|...+.......++.+|+||+++|..++.++.++ |+|.||..||+.|++.+.+||+||+.+...
T Consensus 5 ~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 5 SSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 356788888877666677888999999999999999998 999999999999999999999999988654
No 2
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.74 E-value=2e-18 Score=120.33 Aligned_cols=76 Identities=26% Similarity=0.631 Sum_probs=66.2
Q ss_pred HhcCCCHHHHhcCCcccccCCC-CCCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 85 AARGLKKSALRQIPVAVYGAAG-VKIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 85 ~~~~~~~~~~~~lp~~~~~~~~-~~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
...+++++.++.+|...+.... ....+..|+||+++|..++.++.++ |+|.||..||+.|++.+.+||+||+.+..
T Consensus 13 ~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 13 ANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 3467899999999999887654 3455677999999999999999998 99999999999999999999999998854
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.67 E-value=3.8e-17 Score=102.96 Aligned_cols=51 Identities=51% Similarity=1.269 Sum_probs=46.5
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCc
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
++.+|+||+++|..++.+..++.|+|.||.+||++|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 467899999999998888888779999999999999999999999998874
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.3e-16 Score=106.66 Aligned_cols=56 Identities=32% Similarity=0.791 Sum_probs=49.5
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCCCC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQPT 164 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~~~ 164 (197)
.....+|+||+++|..+..+..++ |+|.||..||..|++.+.+||+||+.+.....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 344678999999999999999998 99999999999999999999999999876443
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=2e-16 Score=104.21 Aligned_cols=55 Identities=42% Similarity=0.923 Sum_probs=49.0
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCCC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQP 163 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~~ 163 (197)
......|+||++.|..++.++.++ |+|.||..||..|++.+.+||+||+.+....
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 445678999999998888888998 9999999999999999999999999986654
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.65 E-value=1.7e-16 Score=107.03 Aligned_cols=57 Identities=49% Similarity=0.963 Sum_probs=50.1
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCCCCC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQPTS 165 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~~~~ 165 (197)
.....+|+||++.|..++.++.++ |+|.||..||..|++.+.+||+||+.+......
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSC
T ss_pred CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccC
Confidence 445678999999999988888998 999999999999999999999999998765443
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.3e-16 Score=107.55 Aligned_cols=52 Identities=37% Similarity=0.873 Sum_probs=42.5
Q ss_pred CCCccccccccccc-----------CCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 110 KATDCAICLVDFMD-----------GEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 110 ~~~~C~ICl~~~~~-----------~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
++..|+||+++|++ ++.++.++.|+|.||.+||++|++.+.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45668888888754 45566666699999999999999999999999998754
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.62 E-value=3.7e-16 Score=112.82 Aligned_cols=61 Identities=23% Similarity=0.558 Sum_probs=48.0
Q ss_pred CCCcccccccccccCC---------------ceEEcCCCCCcccHhHHHHHH-----hCCCCCcccccCCcCCCCCCccc
Q 029206 110 KATDCAICLVDFMDGE---------------KVRVLPKCNHGFHVRCIDTWL-----MSHSSCPTCRRSLLDQPTSSDAA 169 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~---------------~i~~lp~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~v~~~~~~~~~~ 169 (197)
.+.+|+|||++|..+. .++.++ |+|+||..||+.|+ ..+.+||+||+.+....+++.++
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~g 102 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWG 102 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCCC
Confidence 3568999999997643 344676 99999999999999 45678999999998776665554
Q ss_pred cc
Q 029206 170 EM 171 (197)
Q Consensus 170 ~~ 171 (197)
.+
T Consensus 103 ~m 104 (114)
T 1v87_A 103 KM 104 (114)
T ss_dssp SC
T ss_pred eE
Confidence 44
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.56 E-value=2.1e-15 Score=94.76 Aligned_cols=50 Identities=32% Similarity=0.688 Sum_probs=43.0
Q ss_pred CCCcccccccccccC-CceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCc
Q 029206 110 KATDCAICLVDFMDG-EKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~-~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
...+|+||+++|.++ +.+..++ |+|.||..||+.|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 457899999999654 3567777 9999999999999999999999998873
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.54 E-value=3.2e-15 Score=98.77 Aligned_cols=53 Identities=25% Similarity=0.647 Sum_probs=45.1
Q ss_pred CCCCcccccccccccC----CceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCC
Q 029206 109 IKATDCAICLVDFMDG----EKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQ 162 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~----~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~ 162 (197)
.++.+|+||++.|.+. +.+..++ |||.||..||+.|++.+.+||+||+.+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 4467899999999763 4556777 999999999999999999999999998654
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=5.3e-15 Score=96.99 Aligned_cols=53 Identities=25% Similarity=0.634 Sum_probs=44.5
Q ss_pred CCCCCcccccccccccC----CceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 108 KIKATDCAICLVDFMDG----EKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~----~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
.....+|+||++.|.+. ..+..++ |+|.||..||+.|+..+.+||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34567899999999764 3446777 99999999999999999999999998753
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.52 E-value=7.7e-15 Score=104.98 Aligned_cols=51 Identities=39% Similarity=0.735 Sum_probs=43.1
Q ss_pred CCCCcccccccccccCC---------------ceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCc
Q 029206 109 IKATDCAICLVDFMDGE---------------KVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~---------------~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
..+..|+||+++|+..- .++.++ |+|.||..||+.||..+.+||+||+.+.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 35678999999997541 356676 9999999999999999999999999864
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.52 E-value=4.9e-15 Score=95.74 Aligned_cols=52 Identities=25% Similarity=0.667 Sum_probs=44.1
Q ss_pred CCCcccccccccccC----CceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCC
Q 029206 110 KATDCAICLVDFMDG----EKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQ 162 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~----~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~ 162 (197)
++.+|+||++.|.+. +.+..++ |||.||..||..|+..+.+||+||+.+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 356899999999763 4456777 999999999999999999999999988653
No 14
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.4e-14 Score=98.51 Aligned_cols=54 Identities=24% Similarity=0.639 Sum_probs=45.0
Q ss_pred CCCCCcccccccccccCCceEEcCCCC-----CcccHhHHHHHHhCC--CCCcccccCCcCCC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCN-----HGFHVRCIDTWLMSH--SSCPTCRRSLLDQP 163 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~-----H~FH~~Ci~~Wl~~~--~~CP~CR~~v~~~~ 163 (197)
..++..|.||+++|++++.+ ++| |+ |.||.+||++|+..+ .+||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 44567899999999877776 588 97 999999999999765 48999999986544
No 15
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.6e-14 Score=95.24 Aligned_cols=51 Identities=35% Similarity=0.881 Sum_probs=43.8
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCCC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQP 163 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~~ 163 (197)
......|+||++.+.+ ..++ |+|.||..||..|+..+.+||+||+.+....
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 3456789999999866 5677 9999999999999999999999999987543
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.46 E-value=4.6e-14 Score=92.45 Aligned_cols=49 Identities=35% Similarity=0.814 Sum_probs=42.3
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
.+.+|+||++.+.+ ....++ |||.||..|+..|+..+.+||+||+.+..
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 45689999999864 346787 99999999999999999999999998853
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.1e-13 Score=91.91 Aligned_cols=54 Identities=22% Similarity=0.483 Sum_probs=43.7
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCCCC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQPT 164 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~~~ 164 (197)
......|+||++.|.+. +..++ |+|.||..||..|+..+.+||+||+.+...+.
T Consensus 12 ~~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 12 LTPYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp CCGGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred cCCCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence 34466799999998663 33346 99999999999999989999999999866443
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=4.8e-14 Score=93.35 Aligned_cols=50 Identities=28% Similarity=0.658 Sum_probs=42.5
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
..+..+|+||++.+.+. ..++ |+|.||..||..|+..+.+||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 44567899999998553 4567 99999999999999999999999998853
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.9e-13 Score=93.69 Aligned_cols=54 Identities=24% Similarity=0.610 Sum_probs=45.1
Q ss_pred CCCCCcccccccccccCCc-eEEcCCCCCcccHhHHHHHHhCC---CCCcccccCCcCC
Q 029206 108 KIKATDCAICLVDFMDGEK-VRVLPKCNHGFHVRCIDTWLMSH---SSCPTCRRSLLDQ 162 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~-i~~lp~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~v~~~ 162 (197)
..+..+|+||++.|.+.+. ...++ |||.||..||..|+..+ .+||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 4456789999999987664 66777 99999999999999875 7899999987553
No 20
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.41 E-value=2e-14 Score=104.43 Aligned_cols=52 Identities=40% Similarity=0.734 Sum_probs=1.4
Q ss_pred CCCCcccccccccccC-------------C--ceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 109 IKATDCAICLVDFMDG-------------E--KVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~-------------~--~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
..+..|+||+++|++. + .+..++ |+|.||..||+.||+.+.+||+||+.+..
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CCC-----------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 3457899999999752 1 223345 99999999999999999999999998643
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=6.8e-13 Score=86.45 Aligned_cols=50 Identities=22% Similarity=0.586 Sum_probs=41.2
Q ss_pred CCCCcccccccccccCCceEEcCCCCCcccHhHHHHHH-hCCCCCcccccCCcCC
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWL-MSHSSCPTCRRSLLDQ 162 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~v~~~ 162 (197)
.+...|+||++.+.+... ++ |||.||..||..|+ ..+.+||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQ---TE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSCCC---CS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCeeE---CC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 446779999999976533 56 99999999999999 4567899999998654
No 22
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=4.8e-13 Score=89.39 Aligned_cols=53 Identities=21% Similarity=0.577 Sum_probs=42.9
Q ss_pred CCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC--CCCcccccCCcCCCC
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH--SSCPTCRRSLLDQPT 164 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~v~~~~~ 164 (197)
....+|+||.+.+..++... .|+|.||..||++||+.+ .+||+||+.+..+..
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 67 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred CCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence 34578999999998665433 499999999999999887 789999988764433
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=6.5e-13 Score=90.00 Aligned_cols=49 Identities=22% Similarity=0.414 Sum_probs=41.8
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCc
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
......|+||++.|.+. ..++ |+|.||..||..|+..+.+||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34456799999998553 3577 9999999999999999999999999985
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.35 E-value=8.8e-13 Score=87.99 Aligned_cols=53 Identities=28% Similarity=0.587 Sum_probs=41.9
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC--CCCcccccCCcCCC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH--SSCPTCRRSLLDQP 163 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~v~~~~ 163 (197)
......|+||++.|.++ ..++.|+|.||..||..|+..+ .+||+||+.+...+
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 12 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp SCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 34456799999999764 3465599999999999999765 68999999765433
No 25
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.35 E-value=3.7e-13 Score=98.74 Aligned_cols=53 Identities=25% Similarity=0.647 Sum_probs=45.1
Q ss_pred CCCCcccccccccccC----CceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCC
Q 029206 109 IKATDCAICLVDFMDG----EKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQ 162 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~----~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~ 162 (197)
.+..+|+||++.|.++ +.+..++ |||.||..||+.|++.+.+||+||+.+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 3467899999999764 4556777 999999999999999999999999988654
No 26
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.4e-12 Score=86.42 Aligned_cols=51 Identities=25% Similarity=0.563 Sum_probs=41.3
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHh---CCCCCcccccCCcCC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLM---SHSSCPTCRRSLLDQ 162 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~CR~~v~~~ 162 (197)
......|+||++.|.+ ...++ |||.||..||..|++ .+..||+||+.+...
T Consensus 17 ~~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 3456789999999864 34566 999999999999996 456899999988654
No 27
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.32 E-value=5.8e-13 Score=99.34 Aligned_cols=47 Identities=32% Similarity=0.882 Sum_probs=40.8
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
+..|+||++.|.++ ..++ |||.||..||..|+..+.+||+||.++..
T Consensus 53 ~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 35699999998653 4677 99999999999999999999999998854
No 28
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.31 E-value=1.4e-12 Score=84.75 Aligned_cols=51 Identities=22% Similarity=0.557 Sum_probs=40.8
Q ss_pred CCccccccc-ccccCCce-EEcCCCCCcccHhHHHHHHhC-CCCCcccccCCcCC
Q 029206 111 ATDCAICLV-DFMDGEKV-RVLPKCNHGFHVRCIDTWLMS-HSSCPTCRRSLLDQ 162 (197)
Q Consensus 111 ~~~C~ICl~-~~~~~~~i-~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~v~~~ 162 (197)
+..|+||++ .|.++... ..++ |||.||..||+.|+.+ +..||+||+.+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 467999999 77776543 3466 9999999999999765 46799999998653
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.28 E-value=3.9e-12 Score=86.32 Aligned_cols=50 Identities=30% Similarity=0.558 Sum_probs=41.8
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhC------CCCCcccccCCcC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS------HSSCPTCRRSLLD 161 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~v~~ 161 (197)
......|+||++.|.+. ..++ |+|.||..||..|+.. ...||+||..+..
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 34467899999998665 3677 9999999999999977 6679999998864
No 30
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.27 E-value=1.9e-12 Score=94.98 Aligned_cols=54 Identities=24% Similarity=0.629 Sum_probs=44.7
Q ss_pred CCCCCcccccccccccC----CceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCC
Q 029206 108 KIKATDCAICLVDFMDG----EKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQ 162 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~----~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~ 162 (197)
.....+|+||++.|++. .....++ |||.||..||++|+..+.+||+||..+...
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 34567799999998753 3445666 999999999999999999999999988643
No 31
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.26 E-value=4e-12 Score=85.37 Aligned_cols=50 Identities=24% Similarity=0.519 Sum_probs=41.7
Q ss_pred CCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhC-CCCCcccccCCcCC
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS-HSSCPTCRRSLLDQ 162 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~v~~~ 162 (197)
.....|+||++.|.++ ..++ |||.||..||..|+.. +.+||+||..+...
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cccCCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 3467799999998654 3466 9999999999999987 78899999988643
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.26 E-value=2.2e-12 Score=91.06 Aligned_cols=48 Identities=29% Similarity=0.670 Sum_probs=40.0
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC-CCCcccccCCcC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH-SSCPTCRRSLLD 161 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~v~~ 161 (197)
...|+||++.|.++ +..++ |||.||..||..|+..+ .+||+||..+..
T Consensus 22 ~~~C~IC~~~~~~p--~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRDA--RLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCccccCc--cccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 46799999999643 33366 99999999999999887 689999999854
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=8e-12 Score=80.50 Aligned_cols=44 Identities=27% Similarity=0.612 Sum_probs=36.4
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHh---CCCCCccc
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLM---SHSSCPTC 155 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~C 155 (197)
......|+||++.|.+. ..++ |||.||..||..|++ .+.+||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 44567899999998754 4566 999999999999997 45689998
No 34
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4.7e-12 Score=85.89 Aligned_cols=50 Identities=32% Similarity=0.608 Sum_probs=41.8
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhC------CCCCcccccCCcC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS------HSSCPTCRRSLLD 161 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~v~~ 161 (197)
......|+||++.|.+. ..++ |+|.||..||..|+.. ...||+||..+..
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred ccCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 34567899999998764 3466 9999999999999977 7789999998865
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.25 E-value=3.5e-12 Score=89.57 Aligned_cols=48 Identities=27% Similarity=0.682 Sum_probs=40.4
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
...|+||++.|.++ +..++ |||.||..||..|+..+.+||+||..+..
T Consensus 22 ~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIA--MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCCc--CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 46799999998653 32336 99999999999999999999999998864
No 36
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.24 E-value=2.3e-12 Score=86.60 Aligned_cols=50 Identities=30% Similarity=0.515 Sum_probs=41.4
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhC-------CCCCcccccCCcC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS-------HSSCPTCRRSLLD 161 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~-------~~~CP~CR~~v~~ 161 (197)
..+...|+||++.|.+.. .++ |||.||..||..|+.. ...||+||..+..
T Consensus 9 ~~~~~~C~IC~~~~~~p~---~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPL---SLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECSSCC---CCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccCCee---ECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 344678999999997653 466 9999999999999976 5679999998864
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=7e-12 Score=79.19 Aligned_cols=44 Identities=27% Similarity=0.787 Sum_probs=35.8
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHh---CCCCCccc
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLM---SHSSCPTC 155 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~C 155 (197)
......|+||++.|.+. ..++ |+|.||..||..|+. .+.+||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34467899999999775 3466 999999999999954 56789998
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.23 E-value=5.9e-12 Score=89.84 Aligned_cols=49 Identities=27% Similarity=0.642 Sum_probs=41.6
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQ 162 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~ 162 (197)
...|+||++.|.+ .+..++ |||.||..||..|+..+.+||+||..+...
T Consensus 15 ~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 15 HLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 5679999999865 344446 999999999999999999999999998654
No 39
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.20 E-value=1.6e-11 Score=84.91 Aligned_cols=51 Identities=29% Similarity=0.615 Sum_probs=40.9
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC--CCCcccccCCcC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH--SSCPTCRRSLLD 161 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~v~~ 161 (197)
......|+||++.|.++ ..++.|||.||..||..|+..+ .+||+||..+..
T Consensus 10 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 62 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 62 (92)
T ss_dssp CCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCC
T ss_pred CCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCC
Confidence 34567899999999765 3555599999999999999654 589999998743
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.18 E-value=1.2e-11 Score=94.70 Aligned_cols=48 Identities=38% Similarity=0.731 Sum_probs=40.3
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhC-CCCCcccccCCcC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS-HSSCPTCRRSLLD 161 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~v~~ 161 (197)
...|+||++.|.+ .+..++ |||.||..||..|+.. +.+||+||..+..
T Consensus 54 ~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 4579999999875 344456 9999999999999987 7789999998854
No 41
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.18 E-value=1.2e-11 Score=90.37 Aligned_cols=47 Identities=26% Similarity=0.538 Sum_probs=39.8
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCC-CCcccccCCcC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHS-SCPTCRRSLLD 161 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~v~~ 161 (197)
...|+||++.|.++ ..++ |||.||..||..|+..+. +||+||..+..
T Consensus 52 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 46799999998754 4567 999999999999998554 89999999865
No 42
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.15 E-value=5.6e-11 Score=80.20 Aligned_cols=56 Identities=18% Similarity=0.465 Sum_probs=42.1
Q ss_pred CCCCCcccccccccccCCc-eEEcCCCCCcccHhHHHHHHhC-CCCCcccccCCcCCCC
Q 029206 108 KIKATDCAICLVDFMDGEK-VRVLPKCNHGFHVRCIDTWLMS-HSSCPTCRRSLLDQPT 164 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~-i~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~v~~~~~ 164 (197)
..++..|+||++.+...+. +..++ |||.||..|+..|+.. +..||.||+.+.....
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 3456789999999865433 22344 9999999999998743 5679999999876443
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.15 E-value=2.7e-11 Score=86.58 Aligned_cols=48 Identities=25% Similarity=0.601 Sum_probs=39.8
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCC---CCcccccCCcCC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHS---SCPTCRRSLLDQ 162 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~---~CP~CR~~v~~~ 162 (197)
...|+||++.|.+.. .++ |||.||..||..|+..+. +||+||..+...
T Consensus 21 ~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKEPV---STK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSSCC---BCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcCeE---ECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 357999999987653 366 999999999999998754 899999988653
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.14 E-value=2.1e-11 Score=88.36 Aligned_cols=50 Identities=28% Similarity=0.602 Sum_probs=41.7
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCC-CCcccccCCcC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHS-SCPTCRRSLLD 161 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~v~~ 161 (197)
..+...|+||++.+.++ ..++ |||.||..||..|+..+. +||+||..+..
T Consensus 15 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 34456899999998654 4567 999999999999997765 89999998865
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.10 E-value=4.8e-11 Score=90.24 Aligned_cols=48 Identities=23% Similarity=0.497 Sum_probs=40.6
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCC-CCcccccCCcCC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHS-SCPTCRRSLLDQ 162 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~v~~~ 162 (197)
...|+||++.|.++ ..++ |||.||..||..|+.... +||+||..+...
T Consensus 78 ~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---VTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCC---EEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 46799999998654 3477 999999999999998765 899999998765
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.08 E-value=2.3e-11 Score=87.64 Aligned_cols=47 Identities=30% Similarity=0.738 Sum_probs=39.7
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhC-CCCCcccccCCc
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS-HSSCPTCRRSLL 160 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~v~ 160 (197)
++..|+||++.|.+. ..++ |||.||..||..|+.. +.+||+||..+.
T Consensus 14 ~~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 356799999998654 4567 9999999999999976 668999999885
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.06 E-value=5.4e-11 Score=85.80 Aligned_cols=48 Identities=31% Similarity=0.556 Sum_probs=40.3
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhC-CCCCcccccCCcCC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS-HSSCPTCRRSLLDQ 162 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~v~~~ 162 (197)
...|+||++.|.++ ..++ |||.||..||..|+.. +.+||+||..+...
T Consensus 23 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcHhcCc---EEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 46799999998654 3466 9999999999999987 67899999998653
No 48
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.06 E-value=5.4e-11 Score=75.03 Aligned_cols=48 Identities=21% Similarity=0.526 Sum_probs=39.2
Q ss_pred CCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCCC
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQP 163 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~~ 163 (197)
.+...|+||++.|.+. ..++ |+|.||..||..| ...||+||+.+....
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 3456799999999765 4677 9999999999884 678999999886544
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.05 E-value=1e-10 Score=75.90 Aligned_cols=48 Identities=21% Similarity=0.410 Sum_probs=39.0
Q ss_pred CCCcccccccccccCCceE-EcCCCCCc-ccHhHHHHHHhCCCCCcccccCCc
Q 029206 110 KATDCAICLVDFMDGEKVR-VLPKCNHG-FHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~-~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
++.+|.||++.+.+. +. .+| |||. |+..|+..|.+.+..||+||+.+.
T Consensus 7 ~~~~C~IC~~~~~~~--~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG--CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE--EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE--EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 456799999886433 22 348 9999 899999999998899999999874
No 50
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.00 E-value=2.4e-10 Score=98.26 Aligned_cols=47 Identities=30% Similarity=0.734 Sum_probs=40.3
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHh-CCCCCcccccCCcC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLM-SHSSCPTCRRSLLD 161 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~v~~ 161 (197)
..+|+||++.+.+ ...+| |||.||..|+..|+. .+.+||+||..+..
T Consensus 332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 4689999998744 45677 999999999999998 78899999998854
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.00 E-value=1.2e-10 Score=87.23 Aligned_cols=50 Identities=18% Similarity=0.360 Sum_probs=41.1
Q ss_pred CCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCC-CCcccccCCcCC
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHS-SCPTCRRSLLDQ 162 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~v~~~ 162 (197)
.....|+||++.|.++ ..++ |||.||..||..|+..+. +||+||..+...
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred CcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 4466899999998765 3466 999999999999998665 899999987543
No 52
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.00 E-value=2.2e-10 Score=74.02 Aligned_cols=50 Identities=20% Similarity=0.400 Sum_probs=39.5
Q ss_pred CCCCcccccccccccCCceEEcCCCCCc-ccHhHHHHHHhCCCCCcccccCCc
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHG-FHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
.....|.||++...+. .+..+| |||. |+..|+..|.+.+..||+||+++.
T Consensus 5 ~~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3456799999875332 222347 9998 999999999988889999999884
No 53
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.97 E-value=1e-10 Score=98.39 Aligned_cols=53 Identities=28% Similarity=0.676 Sum_probs=40.2
Q ss_pred CCCCCcccccccccccCCce----EEcCCCCCcccHhHHHHHHhCC-----------CCCcccccCCc
Q 029206 108 KIKATDCAICLVDFMDGEKV----RVLPKCNHGFHVRCIDTWLMSH-----------SSCPTCRRSLL 160 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i----~~lp~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR~~v~ 160 (197)
.....+|+||++.+.++..+ -..++|+|.||..||.+||+.. .+||+||+++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 34567899999999873333 1223599999999999999642 46999999774
No 54
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.96 E-value=6e-10 Score=76.23 Aligned_cols=48 Identities=17% Similarity=0.108 Sum_probs=41.6
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
....|+||++-|+++ ..++ |||.|++.||..|+..+.+||+||..+..
T Consensus 13 ~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDP---VRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hheECcccCchhcCC---eECC-CCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 456799999998765 4677 99999999999999988999999988754
No 55
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.94 E-value=4.5e-10 Score=79.26 Aligned_cols=48 Identities=17% Similarity=0.120 Sum_probs=41.7
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
....|+||++-|.++ ..++ |||.|++.||..|+..+.+||+||.++..
T Consensus 28 ~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMTDP---VRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCSSE---EEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred HhhCCcCccCcccCC---eECC-CCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 456799999998765 4566 99999999999999988999999998865
No 56
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.93 E-value=6.9e-10 Score=77.98 Aligned_cols=49 Identities=22% Similarity=0.142 Sum_probs=42.0
Q ss_pred CCCcccccccccccCCceEEcCCCC-CcccHhHHHHHHhCCCCCcccccCCcCC
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCN-HGFHVRCIDTWLMSHSSCPTCRRSLLDQ 162 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~ 162 (197)
....|+||++-|+++ ..++ || |.|++.||..|+..+.+||+||..+...
T Consensus 21 ~~~~CpI~~~~m~dP---V~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDP---VVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp TTTBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred HhcCCcCccccccCC---eECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 456799999999765 3566 99 9999999999999889999999988653
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.92 E-value=3e-10 Score=82.08 Aligned_cols=45 Identities=22% Similarity=0.526 Sum_probs=38.3
Q ss_pred CCcccccccccccCCceEEc-CCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 111 ATDCAICLVDFMDGEKVRVL-PKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~l-p~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
...|+||++.|.++ ..+ + |||.||..||..|+. ..||+||..+..
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred CCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 46799999999665 345 6 999999999999987 789999999854
No 58
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.91 E-value=7.7e-10 Score=70.81 Aligned_cols=48 Identities=23% Similarity=0.556 Sum_probs=37.1
Q ss_pred CCCCcccccccccccCCceEEcCCCC--C---cccHhHHHHHHhC--CCCCcccccCCc
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCN--H---GFHVRCIDTWLMS--HSSCPTCRRSLL 160 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~--H---~FH~~Ci~~Wl~~--~~~CP~CR~~v~ 160 (197)
.+...|.||+++.. +.+ ++| |. | .||.+||+.|+.. +.+||+||..+.
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS--CCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCC--Cce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45678999999842 333 577 66 4 8999999999964 578999998874
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.84 E-value=9.8e-10 Score=73.12 Aligned_cols=43 Identities=23% Similarity=0.603 Sum_probs=35.8
Q ss_pred CCcccccccccccCCceEEcCCCCCc-ccHhHHHHHHhCCCCCcccccCCcC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHG-FHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
+..|+||++.+.+ ...+| |||. ||..|+..| ..||+||+.+..
T Consensus 24 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 4579999988644 45677 9999 999999998 789999998753
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.82 E-value=1.4e-09 Score=83.39 Aligned_cols=51 Identities=27% Similarity=0.591 Sum_probs=41.8
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC-CCCcccccCCcCC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH-SSCPTCRRSLLDQ 162 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~v~~~ 162 (197)
..+...|+||++.|.++ ..++ |||.||..||..|+..+ .+||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 15 LESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 44567899999998765 4576 99999999999999764 4899999988653
No 61
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.78 E-value=2.5e-09 Score=74.27 Aligned_cols=48 Identities=21% Similarity=0.625 Sum_probs=40.0
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhC--------CCCCcc--cccC
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS--------HSSCPT--CRRS 158 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~--CR~~ 158 (197)
+..+|+||++++..++.+...+ |+|.||.+||..|+.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3567999999998877777676 9999999999999953 236999 9987
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=4e-09 Score=73.35 Aligned_cols=47 Identities=21% Similarity=0.440 Sum_probs=37.3
Q ss_pred CCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC------CCCcc--cccC
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH------SSCPT--CRRS 158 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~------~~CP~--CR~~ 158 (197)
.....|+||++.|.++ + .++.|||.|++.||..|+..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dP--V-~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP--V-KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSE--E-EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCC--E-EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3456799999999764 3 443499999999999999754 48999 9866
No 63
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.69 E-value=7.4e-09 Score=84.63 Aligned_cols=49 Identities=14% Similarity=0.103 Sum_probs=40.3
Q ss_pred CCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC-CCCcccccCCcC
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH-SSCPTCRRSLLD 161 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~v~~ 161 (197)
.....|+||++-|.++ .+++ |||.|+..||..|+..+ .+||+||.++..
T Consensus 206 ~~~~~c~i~~~~~~dP---v~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCC---eECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 3456799999998665 4577 99999999999999764 459999998853
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=1.8e-08 Score=65.93 Aligned_cols=46 Identities=26% Similarity=0.699 Sum_probs=36.9
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCc-ccHhHHHHHHhCCCCCcccccCCcC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHG-FHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
..+...|.||++.. ..+..+| |+|. |+..|+.. ...||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~---~~~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGT---VNWVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSC---CCCEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCC---CCEEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 34467799999875 3456788 9999 99999984 4789999998854
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=8.2e-09 Score=68.68 Aligned_cols=43 Identities=23% Similarity=0.608 Sum_probs=34.5
Q ss_pred CCcccccccccccCCceEEcCCCCCc-ccHhHHHHHHhCCCCCcccccCCcC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHG-FHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
...|+||++.+.+ ...+| |||. ||..|+.. ...||+||..+..
T Consensus 25 ~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 3569999988754 34577 9999 99999964 3789999998854
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.54 E-value=3.2e-08 Score=76.65 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=40.1
Q ss_pred CCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC-CCCcccccCCcC
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH-SSCPTCRRSLLD 161 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~v~~ 161 (197)
.....|+||++-|.++ .+++ |||.|+..||..|+..+ .+||+||.++..
T Consensus 104 p~~f~CPI~~elm~DP---V~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCC---eECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 3456799999999764 4567 99999999999999764 479999988754
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.54 E-value=2.3e-08 Score=67.35 Aligned_cols=43 Identities=28% Similarity=0.666 Sum_probs=35.1
Q ss_pred CCcccccccccccCCceEEcCCCCCc-ccHhHHHHHHhCCCCCcccccCCcC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHG-FHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
+..|.||++.+. ....+| |||. |+..|+..| ..||+||..+..
T Consensus 18 ~~~C~IC~~~~~---~~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEI---NSTFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBC---CEEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccC---cEEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 357999998763 346777 9999 999999887 499999998854
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.45 E-value=4.5e-08 Score=62.70 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=40.0
Q ss_pred CcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCC
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQ 162 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~ 162 (197)
..|+||++.|+++ .+++.|||+|.+.||.+|+..+.+||+++.++...
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 4699999999754 34523999999999999999888999999888543
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.39 E-value=5.7e-08 Score=82.62 Aligned_cols=43 Identities=26% Similarity=0.711 Sum_probs=36.1
Q ss_pred CCCcccccccccccCCceEEcCCCCCc-ccHhHHHHHHhCCCCCcccccCCc
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHG-FHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
++..|+||++.+.+ ...+| |||. ||..|+..| ..||+||..+.
T Consensus 294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 45689999998743 45677 9999 999999988 78999999874
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.37 E-value=1.7e-07 Score=76.34 Aligned_cols=49 Identities=22% Similarity=0.440 Sum_probs=38.9
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC--CCCcc--cccCCcC
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH--SSCPT--CRRSLLD 161 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~--CR~~v~~ 161 (197)
....|+||++.|.++ ++... |||.|++.||..|+..+ .+||+ ||+.+..
T Consensus 180 ~el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 345799999999554 44445 99999999999999764 46999 9997743
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.32 E-value=4e-07 Score=63.28 Aligned_cols=46 Identities=24% Similarity=0.512 Sum_probs=37.9
Q ss_pred cccccccccccCCceEEcCCCCCcccHhHHHHHHhC-CCCCcccccCCcC
Q 029206 113 DCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS-HSSCPTCRRSLLD 161 (197)
Q Consensus 113 ~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~v~~ 161 (197)
.|.+|--++ ....|+.| |+|+|+.+|+..|.++ .++||.|+.++..
T Consensus 3 fC~~C~~Pi--~iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPI--KVYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBC--SEEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCe--EEEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 478886555 55678998 9999999999999854 6889999998853
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.16 E-value=2.2e-06 Score=69.24 Aligned_cols=52 Identities=21% Similarity=0.594 Sum_probs=40.8
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCC--CCcccccCCcCCCC
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHS--SCPTCRRSLLDQPT 164 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~--~CP~CR~~v~~~~~ 164 (197)
...+|.||.+-...+. ..+.|+|.||..|+..|++.+. .||.|+.....+.+
T Consensus 179 ~i~~C~iC~~iv~~g~---~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp TCCBCTTTCSBCSSCE---ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCCcCcchhhHHhCCc---ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 4678999998877653 3445999999999999997654 89999988755433
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=96.30 E-value=0.0047 Score=39.66 Aligned_cols=47 Identities=23% Similarity=0.489 Sum_probs=33.7
Q ss_pred CCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCC----CCcccccCC
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHS----SCPTCRRSL 159 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~v 159 (197)
.....|.||.+. ++ +...-.|...||..|++..|..-. .||.|+...
T Consensus 10 ~~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 345679999743 44 445556999999999998885532 499997543
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.08 E-value=0.0083 Score=40.97 Aligned_cols=52 Identities=21% Similarity=0.532 Sum_probs=39.0
Q ss_pred CCCCCcccccccccccCCceEEcCCCC-CcccHhHHHHHHhCCCCCcccccCCcCCCCC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCN-HGFHVRCIDTWLMSHSSCPTCRRSLLDQPTS 165 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~~~~ 165 (197)
..+-..|-.|+-+. +.+.. |+ |.+|..|+..-|.....||+|+.++...-..
T Consensus 25 ~~G~~nCKsCWf~~---k~LV~---C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 25 HLGPQFCKSCWFEN---KGLVE---CNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CSCCCCCCSSCSCC---SSEEE---CSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred ccCcccChhhcccc---CCeee---ecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 34445699999553 23332 55 9999999999888889999999999765444
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.57 E-value=0.0093 Score=40.98 Aligned_cols=34 Identities=15% Similarity=0.368 Sum_probs=26.6
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHH
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTW 145 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~W 145 (197)
+..|.||++.+..+....-+. |+|.|+..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 467999998754444555576 9999999999983
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=94.63 E-value=0.037 Score=36.99 Aligned_cols=36 Identities=17% Similarity=0.420 Sum_probs=24.7
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHH
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTW 145 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~W 145 (197)
...+..|.||- .|..++... ..-|+-+||..|+.+-
T Consensus 12 ~~~D~~C~VC~-~~t~~~l~p-CRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCE-VWTAESLFP-CRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTC-CCCSSCCSS-CSSSSSCCCHHHHHHH
T ss_pred CCCCcccCccc-cccccceec-cccccccccHhhcccc
Confidence 44577899994 344444332 2238999999999995
No 77
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=93.51 E-value=0.02 Score=36.10 Aligned_cols=49 Identities=20% Similarity=0.462 Sum_probs=34.2
Q ss_pred CCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHh-----CCCCCccccc
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLM-----SHSSCPTCRR 157 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~ 157 (197)
.+...|++|...+.++...+..-.|..-||..|+.--.. ..-.||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 445679999998865554555556988999999754321 2345999975
No 78
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=92.77 E-value=0.045 Score=42.10 Aligned_cols=49 Identities=20% Similarity=0.439 Sum_probs=35.4
Q ss_pred CCcccccccccccCCc---eEEcCCCCCcccHhHHHHH------Hh-----CCCCCcccccCC
Q 029206 111 ATDCAICLVDFMDGEK---VRVLPKCNHGFHVRCIDTW------LM-----SHSSCPTCRRSL 159 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~---i~~lp~C~H~FH~~Ci~~W------l~-----~~~~CP~CR~~v 159 (197)
+..|+||...|.+++. .+..-.|..-||..|..-- +. ..-.||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 4569999999988763 5566569999999997321 11 156799998654
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=92.72 E-value=0.091 Score=32.86 Aligned_cols=47 Identities=23% Similarity=0.668 Sum_probs=31.8
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC----CCCcccccC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH----SSCPTCRRS 158 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~ 158 (197)
...+..|.+|... + .+.....|...||..|+..-+... =.||.|+..
T Consensus 8 ~~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3445679999753 3 444455688999999998755322 249999653
No 80
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=91.69 E-value=0.05 Score=42.47 Aligned_cols=47 Identities=28% Similarity=0.474 Sum_probs=33.2
Q ss_pred CCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC----CCCcccccCC
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH----SSCPTCRRSL 159 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~v 159 (197)
..+..|.+|... ..+.....|...||..|+++.+..- =.||.|+..-
T Consensus 5 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 345679999743 3455666688999999998766432 2499998644
No 81
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=91.34 E-value=0.056 Score=41.31 Aligned_cols=46 Identities=30% Similarity=0.559 Sum_probs=32.3
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC----CCCcccccCC
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH----SSCPTCRRSL 159 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~v 159 (197)
.+..|.+|.+. ++ +.....|...||..|+.+-+... -.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 35679999743 44 44555699999999998766432 2499998644
No 82
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=91.28 E-value=0.092 Score=31.39 Aligned_cols=44 Identities=30% Similarity=0.698 Sum_probs=28.9
Q ss_pred cccccccccccCCceEEcCCCCCcccHhHHHHHHhCC----CCCccccc
Q 029206 113 DCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH----SSCPTCRR 157 (197)
Q Consensus 113 ~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~ 157 (197)
.|.||...-+.+ .+.....|...||..|+++=+... =.||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488998664333 444444599999999997534322 23999964
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=91.04 E-value=0.068 Score=33.46 Aligned_cols=48 Identities=25% Similarity=0.584 Sum_probs=31.3
Q ss_pred CCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC----CCCcccccCCc
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH----SSCPTCRRSLL 160 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~v~ 160 (197)
..+..|.+|.+. ++.+ ....|...||..|+..-+... =.||.|+....
T Consensus 7 ~~~~~C~vC~~~---g~ll-~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELL-CCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp SSCSSCTTTCCC---SSCB-CCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CCCCcCCCCCCC---CCEE-EcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 445679999742 3333 334588899999998644332 24999976543
No 84
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.27 E-value=0.048 Score=33.50 Aligned_cols=46 Identities=24% Similarity=0.636 Sum_probs=30.6
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC----CCCccccc
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH----SSCPTCRR 157 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~ 157 (197)
...+..|.+|... ++ +.....|...||..|+++=+... =.||.|+.
T Consensus 6 ~~~~~~C~vC~~~---g~-ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SC-CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---Ce-EEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4456679999854 44 44444589999999998644322 13888854
No 85
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=89.51 E-value=2.2 Score=28.62 Aligned_cols=56 Identities=18% Similarity=0.351 Sum_probs=37.9
Q ss_pred CCCcccccccccc---cCCceEEcCCCCCcccHhHHHHHHhC-CCCCcccccCCcCCCCC
Q 029206 110 KATDCAICLVDFM---DGEKVRVLPKCNHGFHVRCIDTWLMS-HSSCPTCRRSLLDQPTS 165 (197)
Q Consensus 110 ~~~~C~ICl~~~~---~~~~i~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~v~~~~~~ 165 (197)
....|.||-++.- +++.......|+--.|+.|++-=.+. ++.||-|+..+-...+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgs 74 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGS 74 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCC
Confidence 4567999998853 23322223346667899999876644 67899999999654433
No 86
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=89.30 E-value=0.098 Score=33.94 Aligned_cols=50 Identities=18% Similarity=0.370 Sum_probs=33.7
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhC----CCCCcccccCCc
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS----HSSCPTCRRSLL 160 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~v~ 160 (197)
+...|.||..... ++.+...-.|.--||..|+..-... .-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3456999987753 4444455558899999998764432 234999987653
No 87
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=88.40 E-value=0.14 Score=36.00 Aligned_cols=45 Identities=27% Similarity=0.623 Sum_probs=30.4
Q ss_pred cccccccccccCCceEEcCCCCCcccHhHHHHHHhCC----CCCccccc
Q 029206 113 DCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH----SSCPTCRR 157 (197)
Q Consensus 113 ~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~ 157 (197)
.|.+|...-.+.+.+.....|...||..|+++-|..- =.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 5888886533334455555699999999997655332 24999974
No 88
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=88.25 E-value=0.39 Score=30.38 Aligned_cols=34 Identities=24% Similarity=0.535 Sum_probs=26.1
Q ss_pred CCCcccccccccccCCceEEcC-CCCCcccHhHHH
Q 029206 110 KATDCAICLVDFMDGEKVRVLP-KCNHGFHVRCID 143 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp-~C~H~FH~~Ci~ 143 (197)
....|.+|..++.+++..+..- .|.--||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 3456999999988776666665 699999999973
No 89
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=88.12 E-value=1.2 Score=27.06 Aligned_cols=30 Identities=7% Similarity=0.010 Sum_probs=19.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029206 38 DTNMVIILAALLCALICALGLNSIVRCALR 67 (197)
Q Consensus 38 ~~~~~iil~~~~~~~i~~l~i~~~~~~~~r 67 (197)
.++++++++++..++++++++.++++|-+-
T Consensus 10 vp~wiIi~svl~GLllL~li~~~LwK~GFF 39 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMWKVGFF 39 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 346666777777777777777777766543
No 90
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=87.74 E-value=1.5 Score=26.63 Aligned_cols=30 Identities=20% Similarity=0.165 Sum_probs=20.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029206 38 DTNMVIILAALLCALICALGLNSIVRCALR 67 (197)
Q Consensus 38 ~~~~~iil~~~~~~~i~~l~i~~~~~~~~r 67 (197)
.++++++++++..++++++++.++++|-+-
T Consensus 7 vp~WiIi~svl~GLLLL~Lii~~LwK~GFF 36 (54)
T 2l8s_A 7 VPLWVILLSAFAGLLLLMLLILALWKIGFF 36 (54)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 346677777777777777777777766543
No 91
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=87.62 E-value=0.057 Score=33.59 Aligned_cols=47 Identities=26% Similarity=0.703 Sum_probs=31.6
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC----CCCcccccCCc
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH----SSCPTCRRSLL 160 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~v~ 160 (197)
.+..|.+|... ++ +.....|...||..|+.+=+... =.||.|+....
T Consensus 4 ~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---SS-CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---Cc-EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 45679999753 44 44444599999999998644322 23999976543
No 92
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=87.11 E-value=0.45 Score=32.05 Aligned_cols=47 Identities=28% Similarity=0.531 Sum_probs=32.0
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC----CCCcccccC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH----SSCPTCRRS 158 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~ 158 (197)
...+..|.+|... ++ +.....|.-.||..|+++=+..- =.||.|+..
T Consensus 22 d~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 4456679999854 44 44444588899999997755332 249999754
No 93
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=87.04 E-value=0.21 Score=34.84 Aligned_cols=38 Identities=18% Similarity=0.393 Sum_probs=26.4
Q ss_pred CCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHh
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLM 147 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~ 147 (197)
..+..|.||.+.-+..+.+ ....|...||..|++..+.
T Consensus 5 ~~~~~C~~C~~~g~~~~ll-~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQF-FCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSE-ECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCcCCe-ECCCCCCCcChHHhCCccc
Confidence 3567799998763322234 4445999999999988763
No 94
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=87.04 E-value=0.25 Score=31.87 Aligned_cols=50 Identities=18% Similarity=0.399 Sum_probs=32.4
Q ss_pred CCCCCccccccccc-ccCCceEEcCCCCCcccHhHHHHHHhC--CCCCccccc
Q 029206 108 KIKATDCAICLVDF-MDGEKVRVLPKCNHGFHVRCIDTWLMS--HSSCPTCRR 157 (197)
Q Consensus 108 ~~~~~~C~ICl~~~-~~~~~i~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~ 157 (197)
...+..|.||.+.- .+.+.+...-.|.-.||..|+..-..- .=.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34466799998653 234455566669999999998753211 123888854
No 95
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.69 E-value=0.12 Score=34.00 Aligned_cols=44 Identities=23% Similarity=0.625 Sum_probs=28.8
Q ss_pred cccccccccccCCceEEcCCCCCcccHhHHHHHHhC-----CCCCccccc
Q 029206 113 DCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS-----HSSCPTCRR 157 (197)
Q Consensus 113 ~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~ 157 (197)
.|.||...- ++..+...-.|...||..|+++=|.. .=.||.|+.
T Consensus 28 ~C~vC~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKH-EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCC-CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcC-CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 688887642 33445555569999999999853322 124888864
No 96
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=86.55 E-value=0.18 Score=31.96 Aligned_cols=46 Identities=26% Similarity=0.646 Sum_probs=31.0
Q ss_pred CCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC----CCCcccccC
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH----SSCPTCRRS 158 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~ 158 (197)
..+..|.||.+. ++ +.....|...||..|+.+-+..- =.||.|...
T Consensus 6 ~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 345679999853 44 44444588999999998644322 239999653
No 97
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=86.48 E-value=0.51 Score=30.83 Aligned_cols=48 Identities=19% Similarity=0.443 Sum_probs=31.3
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHH-----hCCCCCcccccCC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWL-----MSHSSCPTCRRSL 159 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~v 159 (197)
...| ||...++.....+..-.|..-||..|+.--- ...-.||.|+..-
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3446 9998876444444444598889999985311 1234599998653
No 98
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=86.46 E-value=0.13 Score=33.04 Aligned_cols=44 Identities=34% Similarity=0.733 Sum_probs=27.8
Q ss_pred cccccccccccCCceEEcCCCCCcccHhHHHHHHhC-----CCCCccccc
Q 029206 113 DCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS-----HSSCPTCRR 157 (197)
Q Consensus 113 ~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~ 157 (197)
.|.+|...- ++..+...-.|...||..|+++=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 466776542 33445555568899999999853422 124888864
No 99
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=85.96 E-value=1.1 Score=32.80 Aligned_cols=46 Identities=22% Similarity=0.418 Sum_probs=31.9
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHh---------C--CCCCccccc
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLM---------S--HSSCPTCRR 157 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~---------~--~~~CP~CR~ 157 (197)
...+..|.+|-+ +-.+...-.|...||..||++=+. . .=.||.|+.
T Consensus 60 Dg~~d~C~vC~~----GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAE----GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCC----CSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCC----CCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 344677999964 334555556999999999997552 1 224999974
No 100
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=85.49 E-value=2 Score=24.71 Aligned_cols=29 Identities=7% Similarity=0.047 Sum_probs=19.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029206 38 DTNMVIILAALLCALICALGLNSIVRCAL 66 (197)
Q Consensus 38 ~~~~~iil~~~~~~~i~~l~i~~~~~~~~ 66 (197)
.++++++++++..++++++++..+.+|-+
T Consensus 8 vp~wiIi~s~l~GLllL~li~~~LwK~GF 36 (42)
T 2k1a_A 8 IPIWWVLVGVLGGLLLLTILVLAMWKVGF 36 (42)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 44666677777777777777666666543
No 101
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=85.40 E-value=0.3 Score=29.32 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=29.8
Q ss_pred cccccccccccCCceEEcC-CCCCcccHhHHHHHH----hCCCCCcccc
Q 029206 113 DCAICLVDFMDGEKVRVLP-KCNHGFHVRCIDTWL----MSHSSCPTCR 156 (197)
Q Consensus 113 ~C~ICl~~~~~~~~i~~lp-~C~H~FH~~Ci~~Wl----~~~~~CP~CR 156 (197)
.|.+|..++.++...+..- .|.--||..|+.--. ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4789998886655555554 588889999974311 2455699885
No 102
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=84.94 E-value=0.34 Score=32.53 Aligned_cols=51 Identities=20% Similarity=0.405 Sum_probs=32.9
Q ss_pred CCCCccccccccc-ccCCceEEcCCCCCcccHhHHHHHHhC--CCCCcccccCC
Q 029206 109 IKATDCAICLVDF-MDGEKVRVLPKCNHGFHVRCIDTWLMS--HSSCPTCRRSL 159 (197)
Q Consensus 109 ~~~~~C~ICl~~~-~~~~~i~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~v 159 (197)
..+..|.||...- .+.+.+.....|.-.||..|+..-+.- .=.||.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 4456799998653 233355555568889999999753211 12399996543
No 103
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=84.26 E-value=4.2 Score=25.70 Aligned_cols=14 Identities=7% Similarity=-0.230 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHh
Q 029206 53 ICALGLNSIVRCAL 66 (197)
Q Consensus 53 i~~l~i~~~~~~~~ 66 (197)
.+++++.+.+.|..
T Consensus 19 ~lll~~glcI~ccv 32 (70)
T 2klu_A 19 GLLLFIGLGIFFSV 32 (70)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 33333444444333
No 104
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=84.19 E-value=1.6 Score=31.44 Aligned_cols=47 Identities=21% Similarity=0.417 Sum_probs=32.0
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHH------hC-----CCCCcccccC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWL------MS-----HSSCPTCRRS 158 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl------~~-----~~~CP~CR~~ 158 (197)
...+..|.+|-+ +.++.....|-..||.+||++=+ .. .=.|++|+-.
T Consensus 54 Dg~~~~C~vC~d----GG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAE----GGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCC----CSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCC----CCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 344567999963 34555556688999999999742 11 1259999643
No 105
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=83.89 E-value=0.4 Score=32.81 Aligned_cols=44 Identities=27% Similarity=0.525 Sum_probs=29.2
Q ss_pred CcccccccccccCCceEEcCCCCCcccHhHHHHHHhC---CCCCccccc
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS---HSSCPTCRR 157 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~ 157 (197)
..| ||-.....+..| ..-.|.-.||..|+..=+.. .-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi-~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMI-CCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEE-EBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEE-EcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 897776555444 44559999999998652211 235999974
No 106
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=83.35 E-value=0.22 Score=32.69 Aligned_cols=44 Identities=34% Similarity=0.715 Sum_probs=27.7
Q ss_pred cccccccccccCCceEEcCCCCCcccHhHHHHHHhCC-----CCCccccc
Q 029206 113 DCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH-----SSCPTCRR 157 (197)
Q Consensus 113 ~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~-----~~CP~CR~ 157 (197)
.|.+|...- +.+.+...-.|...||..|+++-|... =.||.|+.
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466665442 334455555688999999998655321 24898875
No 107
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=83.35 E-value=0.72 Score=28.85 Aligned_cols=51 Identities=20% Similarity=0.489 Sum_probs=33.8
Q ss_pred CCCCcccccccccc-cCCceEEcCCCCCcccHhHHHHHHh-------CCCCCcccccCC
Q 029206 109 IKATDCAICLVDFM-DGEKVRVLPKCNHGFHVRCIDTWLM-------SHSSCPTCRRSL 159 (197)
Q Consensus 109 ~~~~~C~ICl~~~~-~~~~i~~lp~C~H~FH~~Ci~~Wl~-------~~~~CP~CR~~v 159 (197)
.++..|.+|..... +...+.....|.-.||..|+..=+. ..=.||.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 44667999987643 2345555556889999999886332 122499986543
No 108
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=82.85 E-value=0.87 Score=28.27 Aligned_cols=42 Identities=33% Similarity=0.680 Sum_probs=29.9
Q ss_pred CcccccccccccCCceEEcCCCCCcccHhHHHHHHhC-CCCCccc
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS-HSSCPTC 155 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~C 155 (197)
..|--|...|.+. .....++|++.|+-+| |..+.. =.+||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 4599999998543 2356778999999999 444432 2569988
No 109
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=82.47 E-value=0.28 Score=37.69 Aligned_cols=44 Identities=32% Similarity=0.603 Sum_probs=29.7
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC----CCCcccccC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH----SSCPTCRRS 158 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~ 158 (197)
+..|.+|.+. ++.+ ....|...||..|+++=+... -.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll-~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLV-MCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCC-CCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---Ccee-ECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4579999744 4433 334488899999997644321 249999765
No 110
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=82.46 E-value=0.26 Score=39.01 Aligned_cols=44 Identities=34% Similarity=0.733 Sum_probs=25.7
Q ss_pred cccccccccccCCceEEcCCCCCcccHhHHHHHHhC-----CCCCccccc
Q 029206 113 DCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMS-----HSSCPTCRR 157 (197)
Q Consensus 113 ~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~ 157 (197)
.|.+|...- ++..+...-.|...||..|+++=|.. .=.||.|+.
T Consensus 176 ~C~vC~~~~-~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCC-C--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCC-CCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 478887542 23344455569999999999854422 124999964
No 111
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=82.02 E-value=0.7 Score=32.04 Aligned_cols=49 Identities=18% Similarity=0.457 Sum_probs=33.5
Q ss_pred CCcccccccccccCCceEEcC-CCCCcccHhHHHHHH-----h-----CCCCCcccccCC
Q 029206 111 ATDCAICLVDFMDGEKVRVLP-KCNHGFHVRCIDTWL-----M-----SHSSCPTCRRSL 159 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp-~C~H~FH~~Ci~~Wl-----~-----~~~~CP~CR~~v 159 (197)
...|.||...|.+.......- .|.--||..|+.--- . .+-.||.|+..-
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 346999999987665555553 588889999974211 0 234599998653
No 112
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=81.98 E-value=0.31 Score=36.62 Aligned_cols=48 Identities=21% Similarity=0.523 Sum_probs=32.6
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHHH-----hCCCCCcccccC
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWL-----MSHSSCPTCRRS 158 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~ 158 (197)
....| +|...+.+.......-.|...||..|+.--- ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34568 9998876555555555699999999985211 123459999763
No 113
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.86 E-value=0.19 Score=34.11 Aligned_cols=49 Identities=24% Similarity=0.521 Sum_probs=32.6
Q ss_pred CCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCC----CCCcccccC
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH----SSCPTCRRS 158 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~ 158 (197)
.+...|.||...-.. +.+...-.|...||..|+.+=+..- =.||.|+..
T Consensus 14 ~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 345579999876433 3444555699999999997533221 239999764
No 114
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.12 E-value=0.25 Score=33.16 Aligned_cols=50 Identities=18% Similarity=0.487 Sum_probs=34.1
Q ss_pred CCccccccccccc-CCceEEcCCCCCcccHhHHHHHHhC--------CCCCcccccCCc
Q 029206 111 ATDCAICLVDFMD-GEKVRVLPKCNHGFHVRCIDTWLMS--------HSSCPTCRRSLL 160 (197)
Q Consensus 111 ~~~C~ICl~~~~~-~~~i~~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~CR~~v~ 160 (197)
+..|.+|...-.. ...+...-.|...||..|+++=|.. .=.|+.|+....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 4579999876332 2455566669999999999865431 124999976553
No 115
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=78.52 E-value=1.8 Score=29.20 Aligned_cols=45 Identities=29% Similarity=0.608 Sum_probs=27.1
Q ss_pred CCCcccccccccccCCceEEcCC--CC-CcccHhHHHHHHhC----CCCCcccccCC
Q 029206 110 KATDCAICLVDFMDGEKVRVLPK--CN-HGFHVRCIDTWLMS----HSSCPTCRRSL 159 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~~v 159 (197)
+...| ||.... .++. ...-. |. .-||..|+. |.. +-.||.|+..-
T Consensus 35 e~~yC-iC~~~~-~g~M-I~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVS-YGEM-IGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBC-CSCC-CCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCC-CCCE-eEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 34457 998764 2433 33334 44 579999987 332 23499997643
No 116
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=77.94 E-value=3.5 Score=28.61 Aligned_cols=33 Identities=21% Similarity=0.450 Sum_probs=23.0
Q ss_pred CCcccccccccc-----cCCceEEcCCCCCcccHhHHH
Q 029206 111 ATDCAICLVDFM-----DGEKVRVLPKCNHGFHVRCID 143 (197)
Q Consensus 111 ~~~C~ICl~~~~-----~~~~i~~lp~C~H~FH~~Ci~ 143 (197)
...|.+|+..-. .++++.....|+..||..|+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 456999987521 233444555699999999995
No 117
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=77.75 E-value=2.6 Score=29.26 Aligned_cols=48 Identities=19% Similarity=0.503 Sum_probs=30.3
Q ss_pred CCCCCcccccccccccCCceEEcC--CCCCcccHhHHHHHHhCCC----CCcccccCCcC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLP--KCNHGFHVRCIDTWLMSHS----SCPTCRRSLLD 161 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp--~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~v~~ 161 (197)
...+..|.+|.+ +..+...- .|...||..|+. |.... .||.|+-.+-.
T Consensus 12 ~~~~~~C~~C~~----~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 12 QMHEDYCFQCGD----GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECS 65 (107)
T ss_dssp CSSCSSCTTTCC----CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTC
T ss_pred CCCCCCCCcCCC----CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCC
Confidence 445677999973 23344443 488999999997 43321 38877655543
No 118
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.47 E-value=1.1 Score=28.94 Aligned_cols=46 Identities=22% Similarity=0.433 Sum_probs=30.3
Q ss_pred CcccccccccccCCceEEcCCCCCcccHhHHHHHH---------hCCCCCcccccCC
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWL---------MSHSSCPTCRRSL 159 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl---------~~~~~CP~CR~~v 159 (197)
..| ||...+.....| ..-.|..-||..|+.--. ..+-.||.|+..-
T Consensus 17 ~~C-~C~~~~~~~~MI-~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMI-CCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCS-TTCCCCCSSCEE-ECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CEE-ECCCccCCCCEE-EeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 447 898887544444 444599899999984211 2456799997543
No 119
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=77.03 E-value=3 Score=26.65 Aligned_cols=45 Identities=29% Similarity=0.630 Sum_probs=27.5
Q ss_pred CCCcccccccccccCCceEEcCC--CC-CcccHhHHHHHHhCC----CCCcccccCC
Q 029206 110 KATDCAICLVDFMDGEKVRVLPK--CN-HGFHVRCIDTWLMSH----SSCPTCRRSL 159 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~--C~-H~FH~~Ci~~Wl~~~----~~CP~CR~~v 159 (197)
+...| ||.... .++ +...-. |. .-||..|+. |... -.||.|+..-
T Consensus 15 ~~~~C-~C~~~~-~g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVS-YGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCS-CSS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCC-CCC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34457 898753 243 334434 55 589999987 4332 2499997644
No 120
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=74.88 E-value=0.73 Score=32.31 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=23.2
Q ss_pred Cccccccccccc------CCceEEcCCCCCcccHhHHHHH
Q 029206 112 TDCAICLVDFMD------GEKVRVLPKCNHGFHVRCIDTW 145 (197)
Q Consensus 112 ~~C~ICl~~~~~------~~~i~~lp~C~H~FH~~Ci~~W 145 (197)
..|.+|+..-.. ++.+.....|+..||..|++.+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 459999875421 2344444459999999999754
No 121
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=74.85 E-value=0.46 Score=33.91 Aligned_cols=49 Identities=18% Similarity=0.430 Sum_probs=33.0
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSL 159 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v 159 (197)
...|..|-..|..-..---...||.+|+..|........+.|-.|...+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 4579999999865433344456999999999877665567788886543
No 122
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=74.69 E-value=2.8 Score=27.91 Aligned_cols=54 Identities=20% Similarity=0.359 Sum_probs=36.3
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHh-------CCCCCcccccCCcC
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLM-------SHSSCPTCRRSLLD 161 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~-------~~~~CP~CR~~v~~ 161 (197)
..+...|.+|...|..-..---...||++|+..|....+. ..+.|-.|...+..
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 3445679999999875544344456999999999765431 22458888666544
No 123
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=74.33 E-value=7.2 Score=22.57 Aligned_cols=9 Identities=11% Similarity=-0.038 Sum_probs=3.4
Q ss_pred HHHHHHhhh
Q 029206 60 SIVRCALRC 68 (197)
Q Consensus 60 ~~~~~~~r~ 68 (197)
+...++.|+
T Consensus 28 ~~~~~~~RR 36 (44)
T 2l2t_A 28 LTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhh
Confidence 333333443
No 124
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=73.70 E-value=2.6 Score=27.72 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=26.7
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHH
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTW 145 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~W 145 (197)
+...|.+|-..|..-..---...||++|+..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 456799999999755433444569999999997654
No 125
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=73.68 E-value=2.6 Score=26.92 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=24.5
Q ss_pred CcccccccccccCCceEEcCCCCCcccHhHHHH
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDT 144 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~ 144 (197)
..|.+|...|..-..---...||++|+..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 579999999875443334446999999999654
No 126
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=73.24 E-value=2.4 Score=28.36 Aligned_cols=49 Identities=20% Similarity=0.429 Sum_probs=32.8
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHh------CCCCCcccccCC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLM------SHSSCPTCRRSL 159 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~------~~~~CP~CR~~v 159 (197)
...|.+|...|.--..-.-...||++|+..|...+.. ..+.|-.|-..+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 4579999999875443344456999999999776542 123466665544
No 127
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=73.06 E-value=2.3 Score=30.32 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=25.5
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHH
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTW 145 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~W 145 (197)
...|.+|...|..-..---...||++||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 45799999998754433344469999999996543
No 128
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=72.65 E-value=2.8 Score=27.43 Aligned_cols=36 Identities=25% Similarity=0.454 Sum_probs=26.3
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHH
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTW 145 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~W 145 (197)
+...|.+|...|.--..---...||.+|+..|....
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 345799999999754433344569999999997653
No 129
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=72.53 E-value=2.1 Score=30.95 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=25.8
Q ss_pred CCCCcccccccccc-cCCceEEcCCCCCcccHhHHH
Q 029206 109 IKATDCAICLVDFM-DGEKVRVLPKCNHGFHVRCID 143 (197)
Q Consensus 109 ~~~~~C~ICl~~~~-~~~~i~~lp~C~H~FH~~Ci~ 143 (197)
.++..|.+|...|. -...-+....|+|.+|..|=.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 45788999999984 223345566799999999844
No 130
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=72.21 E-value=1.7 Score=28.26 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=29.6
Q ss_pred CCcccccccccccCCceEEcC--CCCCcccHhHHHHHHh---------CCCCCcccccCC
Q 029206 111 ATDCAICLVDFMDGEKVRVLP--KCNHGFHVRCIDTWLM---------SHSSCPTCRRSL 159 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp--~C~H~FH~~Ci~~Wl~---------~~~~CP~CR~~v 159 (197)
...| ||-.....+..| ..- .|..-||..|+.---. .+-.||.|+..-
T Consensus 16 ~~~C-iC~~~~~~g~MI-~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMI-QCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCC-SSCCCCCCSCEE-ECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CEEe-ECCCcCCCCCEE-EECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 4457 798774444444 443 4999999999853111 234599997643
No 131
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=70.34 E-value=0.95 Score=28.77 Aligned_cols=48 Identities=21% Similarity=0.479 Sum_probs=30.0
Q ss_pred CCCCCcccccccccccCCceEEcCCCCCcccHhHHHHHH---hCCCCCccccc
Q 029206 108 KIKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWL---MSHSSCPTCRR 157 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl---~~~~~CP~CR~ 157 (197)
..+...| ||-..+. ++..+..-.|..-||..|+.--- ...-.||.|+.
T Consensus 16 ~~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 3445568 9987765 33344444598899999985421 12235888864
No 132
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.93 E-value=3.5 Score=27.08 Aligned_cols=35 Identities=26% Similarity=0.500 Sum_probs=24.9
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHH
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDT 144 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~ 144 (197)
+...|.+|..+|..-..---...||.+|+..|...
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 34579999999865433333445999999999544
No 133
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=69.09 E-value=5.5 Score=25.15 Aligned_cols=28 Identities=29% Similarity=0.280 Sum_probs=16.1
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHhhhcc
Q 029206 43 IILAA-LLCALICALGLNSIVRCALRCSR 70 (197)
Q Consensus 43 iil~~-~~~~~i~~l~i~~~~~~~~r~~r 70 (197)
++|+. +..+++.-+.++..++|+.|+++
T Consensus 12 ivlGg~~~lll~~glcI~ccvkcrhRrrq 40 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSVRSRHRRRQ 40 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSSS
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44544 44444555556657888866543
No 134
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=68.87 E-value=0.46 Score=30.17 Aligned_cols=45 Identities=20% Similarity=0.448 Sum_probs=26.4
Q ss_pred CcccccccccccCCceEEc-CCCCCcccHhHHHHHH---h-----CCCCCccccc
Q 029206 112 TDCAICLVDFMDGEKVRVL-PKCNHGFHVRCIDTWL---M-----SHSSCPTCRR 157 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~l-p~C~H~FH~~Ci~~Wl---~-----~~~~CP~CR~ 157 (197)
..| ||-.....+..|.-- ..|..-||..|+.--- . .+-.||.||.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 347 797665555444332 1388889999973200 0 1245999974
No 135
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=68.75 E-value=0.74 Score=31.95 Aligned_cols=45 Identities=29% Similarity=0.599 Sum_probs=28.6
Q ss_pred cccccccccccCCceEEcCCCCCcccHhHHHHHHhCC----CCCcccccC
Q 029206 113 DCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH----SSCPTCRRS 158 (197)
Q Consensus 113 ~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~ 158 (197)
.|.+|...-.+ +.+.....|...||..|+++=+... -.||.|+.-
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 47777655333 3455555699999999998644321 248888643
No 136
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=68.39 E-value=1 Score=38.35 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=0.0
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHh-------CCCCCcccccCC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLM-------SHSSCPTCRRSL 159 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~-------~~~~CP~CR~~v 159 (197)
...|.+|-..|.--..-.-...||++||..|-..++. ..+.|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 4679999998864432233345999999999987651 124577776554
No 137
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=68.03 E-value=5.2 Score=29.79 Aligned_cols=45 Identities=27% Similarity=0.536 Sum_probs=31.2
Q ss_pred CCCCcccccccccccCCceEEcC--CCCCcccHhHHHHHHhCC----------CCCccccc
Q 029206 109 IKATDCAICLVDFMDGEKVRVLP--KCNHGFHVRCIDTWLMSH----------SSCPTCRR 157 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp--~C~H~FH~~Ci~~Wl~~~----------~~CP~CR~ 157 (197)
..+..|.||-+ +..+.... .|...|+..||+.++... =.|=+|.-
T Consensus 77 G~~~yC~wC~~----Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 77 GYQSYCTICCG----GREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SSBSSCTTTSC----CSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCcceeeEecC----CCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 34567999963 44555554 588999999999988331 23888853
No 138
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=67.88 E-value=2.7 Score=32.72 Aligned_cols=35 Identities=20% Similarity=0.406 Sum_probs=25.7
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHH
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTW 145 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~W 145 (197)
+..|.+|...|.--..---...||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 56899999998654433344569999999996543
No 139
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=66.19 E-value=3.2 Score=32.54 Aligned_cols=35 Identities=23% Similarity=0.466 Sum_probs=26.3
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHH
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTW 145 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~W 145 (197)
+..|.+|...|.--..-.-...||++||..|-..+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 46899999998754433445569999999997654
No 140
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=65.95 E-value=1.4 Score=30.50 Aligned_cols=27 Identities=30% Similarity=0.774 Sum_probs=18.4
Q ss_pred CCCCcccHhHHHHHHhCCCCCcccccCCcCCC
Q 029206 132 KCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQP 163 (197)
Q Consensus 132 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~~ 163 (197)
+||+.| ..=+.....||.|+..-.+.+
T Consensus 72 ~CG~~F-----~~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 72 KCGFVF-----KAEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp TTCCBC-----CCCSSCCSSCSSSCCCCBCCC
T ss_pred hCcCee-----cccCCCCCCCcCCCCCccCCc
Confidence 499999 111345577999998766544
No 141
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=65.67 E-value=4.5 Score=38.45 Aligned_cols=47 Identities=21% Similarity=0.167 Sum_probs=39.0
Q ss_pred CCcccccccccccCCceEEcCCCC-CcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCN-HGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
...|+|-++-|.++ .++| -| +.|-+.+|..|+..+.+||+=|.++..
T Consensus 891 ~F~cPIs~~lM~DP---Vilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 891 EFLDPLMYTIMKDP---VILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp GGBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred HhCCcchhhHHhCC---eEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 45599999888665 4676 76 589999999999999999999988864
No 142
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=63.07 E-value=0.49 Score=33.21 Aligned_cols=46 Identities=24% Similarity=0.625 Sum_probs=29.6
Q ss_pred cccccccccccCCceEEcCCCCCcccHhHHHHHHhCC----CCCcccccCC
Q 029206 113 DCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSH----SSCPTCRRSL 159 (197)
Q Consensus 113 ~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~v 159 (197)
.|.||...-.. ..+...-.|...||..|+++=|..- =.||.|+..+
T Consensus 60 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSEND-DQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTT-TTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCC-CceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 58888765333 3444555699999999998533221 1388886544
No 143
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=62.45 E-value=2.4 Score=26.04 Aligned_cols=42 Identities=31% Similarity=0.669 Sum_probs=26.1
Q ss_pred CCcccccccccccCCceEEcCC--CC-CcccHhHHHHHHhCC----CCCccccc
Q 029206 111 ATDCAICLVDFMDGEKVRVLPK--CN-HGFHVRCIDTWLMSH----SSCPTCRR 157 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~--C~-H~FH~~Ci~~Wl~~~----~~CP~CR~ 157 (197)
..-| ||.... .+ .+...-. |. .-||..|+. +... -.||.|+.
T Consensus 9 ~~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3446 898764 34 3444445 55 589999987 3332 24999864
No 144
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=62.34 E-value=6.5 Score=33.48 Aligned_cols=45 Identities=22% Similarity=0.549 Sum_probs=31.5
Q ss_pred CCCCcccccccccccCCceEEcC--CCCCcccHhHHHHHHhC----------CCCCccccc
Q 029206 109 IKATDCAICLVDFMDGEKVRVLP--KCNHGFHVRCIDTWLMS----------HSSCPTCRR 157 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp--~C~H~FH~~Ci~~Wl~~----------~~~CP~CR~ 157 (197)
..+..|.+|-+ +.++.... .|...||..||+.++-. .=.|=+|.-
T Consensus 91 G~~~yCr~C~~----Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 91 GYQSYCSICCS----GETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSBCSCTTTCC----CSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCcccceEcCC----CCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 34567999964 34455555 69999999999998822 224888864
No 145
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=61.83 E-value=4.9 Score=29.71 Aligned_cols=48 Identities=21% Similarity=0.342 Sum_probs=30.8
Q ss_pred CCCCcccccccccccC-CceEEcCCCCCcccHhHHHHHHhCCC--CCccccc
Q 029206 109 IKATDCAICLVDFMDG-EKVRVLPKCNHGFHVRCIDTWLMSHS--SCPTCRR 157 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~-~~i~~lp~C~H~FH~~Ci~~Wl~~~~--~CP~CR~ 157 (197)
..+..|.+|..+|.-- ..-.....|+|.+|..|= .|..... .|-+|+.
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 3567899999987532 223445569999999996 2333222 2777754
No 146
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=60.98 E-value=2.4 Score=26.09 Aligned_cols=42 Identities=29% Similarity=0.661 Sum_probs=25.4
Q ss_pred CCcccccccccccCCceEEcCC--CC-CcccHhHHHHHHhCC----CCCccccc
Q 029206 111 ATDCAICLVDFMDGEKVRVLPK--CN-HGFHVRCIDTWLMSH----SSCPTCRR 157 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~--C~-H~FH~~Ci~~Wl~~~----~~CP~CR~ 157 (197)
...| ||.... .+ .+...-. |. .-||..|+. |... -.||.|+.
T Consensus 10 ~~~C-~C~~~~-~g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVS-YG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcC-CC-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3446 898763 33 3444444 44 579999987 4332 24998864
No 147
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=60.77 E-value=22 Score=20.50 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 029206 48 LLCALICALGLNSIVRCALRCS 69 (197)
Q Consensus 48 ~~~~~i~~l~i~~~~~~~~r~~ 69 (197)
++.++++++.+++++|-..+.+
T Consensus 20 v~~v~ii~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 20 LFILVIVGLTFAVYVRRKSIKK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHHHHHHhhhhhhhh
Confidence 4444444555555555544443
No 148
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=60.68 E-value=7.4 Score=25.39 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029206 42 VIILAALLCALICALGLNSIVRC 64 (197)
Q Consensus 42 ~iil~~~~~~~i~~l~i~~~~~~ 64 (197)
.++++++++++++-+++.++.++
T Consensus 12 ~Iv~gvi~gilliGllllliwk~ 34 (79)
T 2knc_B 12 VVLLSVMGAILLIGLAALLIWKL 34 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444443333333333433
No 149
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=60.02 E-value=5.3 Score=26.30 Aligned_cols=39 Identities=23% Similarity=0.380 Sum_probs=28.3
Q ss_pred CCCcccccccccccCCceEEcCC-CCCcccHhHHHHHHhCC
Q 029206 110 KATDCAICLVDFMDGEKVRVLPK-CNHGFHVRCIDTWLMSH 149 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~-C~H~FH~~Ci~~Wl~~~ 149 (197)
....|.+|.+.+++.-.+ +.|. =+|.||-.|-+..++++
T Consensus 14 a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp CSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHHH
T ss_pred CeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHhc
Confidence 345699999998776555 4332 23899999999988653
No 150
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=58.12 E-value=4.2 Score=27.85 Aligned_cols=11 Identities=27% Similarity=0.963 Sum_probs=10.3
Q ss_pred ccHhHHHHHHh
Q 029206 137 FHVRCIDTWLM 147 (197)
Q Consensus 137 FH~~Ci~~Wl~ 147 (197)
||+.||..|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999994
No 151
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.10 E-value=8.9 Score=23.67 Aligned_cols=40 Identities=28% Similarity=0.556 Sum_probs=28.4
Q ss_pred CCccccccccccc--CCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCc
Q 029206 111 ATDCAICLVDFMD--GEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 111 ~~~C~ICl~~~~~--~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
...|+-|-..+.. .+.+.. . -+..||.+|+ .|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~-a-~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS-F-EERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE-C-SSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEE-E-CCcccCcccC--------EeccCCCcCC
Confidence 4579999988875 333322 2 5788999884 6888988875
No 152
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=57.79 E-value=4.3 Score=27.75 Aligned_cols=11 Identities=45% Similarity=1.229 Sum_probs=10.3
Q ss_pred ccHhHHHHHHh
Q 029206 137 FHVRCIDTWLM 147 (197)
Q Consensus 137 FH~~Ci~~Wl~ 147 (197)
||+.||..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999995
No 153
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=55.92 E-value=5.1 Score=25.37 Aligned_cols=47 Identities=30% Similarity=0.447 Sum_probs=30.5
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHH----hCCCCCcccccC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWL----MSHSSCPTCRRS 158 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl----~~~~~CP~CR~~ 158 (197)
...| ||...+..+...+..-.|..-||..|+.--- ..+-.||.|+..
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 3458 7988765554444555688889999976421 123459999753
No 154
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=55.75 E-value=11 Score=31.93 Aligned_cols=45 Identities=18% Similarity=0.411 Sum_probs=28.6
Q ss_pred CcccccccccccCCceEEcCCCCCc--ccHhHHHHHHhCC--CCCcccccCC
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHG--FHVRCIDTWLMSH--SSCPTCRRSL 159 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~--FH~~Ci~~Wl~~~--~~CP~CR~~v 159 (197)
..|++=+..++. -+|-.. |.|. |-..-+.....+. -.||+|.+.+
T Consensus 250 L~CPlS~~ri~~--PvRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp SBCTTTSSBCSS--EEEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred ecCCCccccccc--cCcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCccc
Confidence 468887777643 466665 9997 5544443333333 3599998876
No 155
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=53.12 E-value=13 Score=31.39 Aligned_cols=45 Identities=18% Similarity=0.349 Sum_probs=29.1
Q ss_pred CcccccccccccCCceEEcCCCCCc--ccHhHHHHHHhCC--CCCcccccCC
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHG--FHVRCIDTWLMSH--SSCPTCRRSL 159 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~--FH~~Ci~~Wl~~~--~~CP~CR~~v 159 (197)
..|+|=+..++. -+|-.. |.|. |-..-+.....+. -.||+|.+.+
T Consensus 216 L~CPlS~~ri~~--P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~ 264 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKA 264 (360)
T ss_dssp SBCTTTCSBCSS--EEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBC
T ss_pred eeCCCccceecc--CCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCccc
Confidence 458887766643 456665 9997 6644444433333 3599999876
No 156
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=52.93 E-value=5.3 Score=20.98 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=19.2
Q ss_pred CcccccccccccCCceEEcCCCCCcccHhHH
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHGFHVRCI 142 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci 142 (197)
..|+.|-...-..+.+. - =|..||+.|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~-~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--C-LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--S-SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE--E-CCeEecccCC
Confidence 46899987766555443 2 5688999884
No 157
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=51.27 E-value=9 Score=23.37 Aligned_cols=42 Identities=21% Similarity=0.530 Sum_probs=30.4
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQ 162 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~ 162 (197)
...|+-|-..+...+.+... =+..||..|+ .|-.|..++...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 45799999988766654322 5678999885 588888887543
No 158
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=51.24 E-value=2.3 Score=25.25 Aligned_cols=41 Identities=20% Similarity=0.485 Sum_probs=25.3
Q ss_pred ccccccccCCceEEcCCCCCcccHhHHHHHH---hCCCCCccccc
Q 029206 116 ICLVDFMDGEKVRVLPKCNHGFHVRCIDTWL---MSHSSCPTCRR 157 (197)
Q Consensus 116 ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl---~~~~~CP~CR~ 157 (197)
||......+..| ..-.|+.-||..|+.--- ..+-.||.|+.
T Consensus 8 ~C~~~~~~~~MI-~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMI-ECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEE-ECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEE-EcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 677665433444 444588889999975321 12345888864
No 159
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=50.76 E-value=3.2 Score=25.74 Aligned_cols=42 Identities=33% Similarity=0.665 Sum_probs=25.7
Q ss_pred CCcccccccccccCCceEEcCC--CC-CcccHhHHHHHHhC----CCCCccccc
Q 029206 111 ATDCAICLVDFMDGEKVRVLPK--CN-HGFHVRCIDTWLMS----HSSCPTCRR 157 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~ 157 (197)
...| ||.... .++ +...-. |. .-||..|+. |.. +-.||.|+.
T Consensus 11 ~~yC-~C~~~~-~g~-MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS-YGE-MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCC-CCC-eeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 3446 898753 343 444444 44 789999987 322 234999964
No 160
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=47.90 E-value=3.7 Score=21.38 Aligned_cols=13 Identities=31% Similarity=0.720 Sum_probs=9.3
Q ss_pred CCCcccccCCcCC
Q 029206 150 SSCPTCRRSLLDQ 162 (197)
Q Consensus 150 ~~CP~CR~~v~~~ 162 (197)
.+||+|+..+.+.
T Consensus 4 ~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 4 FCCPKCQYQAPDM 16 (28)
T ss_dssp EECTTSSCEESSH
T ss_pred ccCccccccCcCh
Confidence 4699998776553
No 161
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.35 E-value=17 Score=22.21 Aligned_cols=41 Identities=22% Similarity=0.529 Sum_probs=28.7
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
...|+-|-..+...+.+. .. -+..||.+|+ +|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~a-~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKL-EY-GGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEE-CS-TTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEE-EE-CccccCcccC--------eECCCCCcCCC
Confidence 456999998887654432 22 5788998884 58888887754
No 162
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=46.82 E-value=5.6 Score=34.92 Aligned_cols=46 Identities=20% Similarity=0.407 Sum_probs=29.9
Q ss_pred CcccccccccccCCceEEcCCCCCcccHhHHHHHHh-----CCCCCcccccC
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLM-----SHSSCPTCRRS 158 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~ 158 (197)
..| ||...+..+.....+-.|.--||..|+.---. .+-.||.|+..
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 345 89887764444445556998899999843211 12359999754
No 163
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.63 E-value=26 Score=21.37 Aligned_cols=40 Identities=33% Similarity=0.622 Sum_probs=26.5
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCc
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
...|+-|-..+...+.+..- =+..||.+|+ .|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVA--LDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEEC--SSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEE--CCCeEcccCC--------cccccCCcCC
Confidence 45688888877654333222 4678888883 5888887774
No 164
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=46.13 E-value=19 Score=22.68 Aligned_cols=30 Identities=27% Similarity=0.582 Sum_probs=23.4
Q ss_pred CCCcccccccccccCCceEEcCCC-CCcccHhHHHH
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKC-NHGFHVRCIDT 144 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C-~H~FH~~Ci~~ 144 (197)
+..-|.||.++ ..++.+. | +-.|+..|+..
T Consensus 7 e~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE 37 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAG-CDGDLYCARCFRE 37 (67)
T ss_dssp CCSSCTTTCSC----CCEEETT-TTSEEECSSHHHH
T ss_pred CCCeeEEeCCC----CeEEecC-CCCceehHHHHHH
Confidence 34559999754 5688886 9 68999999877
No 165
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.60 E-value=25 Score=21.73 Aligned_cols=41 Identities=27% Similarity=0.573 Sum_probs=30.6
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
....|+-|-..+...+.+.. -+..||.+|+ .|-.|+.+|..
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSS---LGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEE---TTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCCcCCCCEeECCeEEEE---CCeEeeCCCC--------CCCCCCCccCC
Confidence 34679999998876665543 5678998883 58899888764
No 166
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.15 E-value=21 Score=22.06 Aligned_cols=42 Identities=21% Similarity=0.535 Sum_probs=29.3
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
....|+-|-..+...+.+... -+..||.+|+ .|-.|+.++..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTTC--------CCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEeccccC--------eECCCCCCCCC
Confidence 456799999988755544322 4678998884 57888877754
No 167
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.01 E-value=19 Score=22.02 Aligned_cols=41 Identities=20% Similarity=0.545 Sum_probs=28.5
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
...|+.|-..+...+.+... -+..||.+|+ .|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY--KGSSWHETCF--------ICHRCQQPIGT 45 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE--TTEEEETTTT--------CCSSSCCCCCS
T ss_pred CCCCccCCCcccCCceEEEE--CcCeecccCC--------cccccCCccCC
Confidence 35699999888765433222 4678998884 58888887754
No 168
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=43.50 E-value=62 Score=20.69 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=11.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-HHHhh
Q 029206 38 DTNMVIILAALLCALICALGLNSIV-RCALR 67 (197)
Q Consensus 38 ~~~~~iil~~~~~~~i~~l~i~~~~-~~~~r 67 (197)
++...+.-++++.+.+.+++..+.. +|++|
T Consensus 9 spttgvvtv~viliavaalg~li~gcwcylr 39 (90)
T 1zza_A 9 SPTTGVVTVIVILIAIAALGALILGCWCYLR 39 (90)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCcceEEehhHHHHHHHHHHHHHHHHHHHH
Confidence 3343333333333334444433333 34333
No 169
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=43.27 E-value=15 Score=22.90 Aligned_cols=25 Identities=24% Similarity=0.539 Sum_probs=11.5
Q ss_pred ccccccccccCCceEEcCCCCCcccHhH
Q 029206 114 CAICLVDFMDGEKVRVLPKCNHGFHVRC 141 (197)
Q Consensus 114 C~ICl~~~~~~~~i~~lp~C~H~FH~~C 141 (197)
|+-|-..+..++.+.. -+..||.+|
T Consensus 3 C~~C~~~I~~~~~v~a---~~~~~H~~C 27 (76)
T 1iml_A 3 CPKCDKEVYFAERVTS---LGKDWHRPC 27 (76)
T ss_dssp CTTTSSBCCGGGEEEE---TTEEEETTT
T ss_pred CCCCCCEEECceEEEE---CCccccCCC
Confidence 5555555443333322 244555555
No 170
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.33 E-value=29 Score=21.74 Aligned_cols=42 Identities=17% Similarity=0.532 Sum_probs=29.8
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQ 162 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~ 162 (197)
...|+.|-..+...+.+... =+..||.+|+ +|-.|++++...
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC--SSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEEEE--CccccccccC--------chhhCCCccCCC
Confidence 35799999888766554322 5678998884 588888887543
No 171
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.10 E-value=23 Score=22.49 Aligned_cols=40 Identities=28% Similarity=0.654 Sum_probs=29.7
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCc
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
....|+-|-..+..++.+.. -+..||.+|+ .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCcccccccC--------CcCcCCCCcC
Confidence 34679999998876666554 4578998883 5888988774
No 172
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=41.30 E-value=48 Score=18.77 Aligned_cols=12 Identities=25% Similarity=0.539 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 029206 41 MVIILAALLCAL 52 (197)
Q Consensus 41 ~~iil~~~~~~~ 52 (197)
..+++.++.+++
T Consensus 10 ~~Iv~gvi~~iv 21 (43)
T 2k9j_B 10 LVVLLSVMGAIL 21 (43)
T ss_dssp HHHHHHHHHHHH
T ss_pred eehHHHHHHHHH
Confidence 333344444333
No 173
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=40.77 E-value=6 Score=25.13 Aligned_cols=19 Identities=37% Similarity=0.664 Sum_probs=13.7
Q ss_pred HHHHhCCCCCcccccCCcC
Q 029206 143 DTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 143 ~~Wl~~~~~CP~CR~~v~~ 161 (197)
+.||..--.||.|+.++.-
T Consensus 2 d~~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLKL 20 (69)
T ss_dssp -CCGGGTCCCTTTCCCCEE
T ss_pred ChHHHhheeCCCCCCcCeE
Confidence 5566677789999988754
No 174
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=40.22 E-value=48 Score=18.47 Aligned_cols=18 Identities=17% Similarity=0.100 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029206 40 NMVIILAALLCALICALG 57 (197)
Q Consensus 40 ~~~iil~~~~~~~i~~l~ 57 (197)
...+++++...++..+++
T Consensus 12 i~lII~~vmaGiIG~Ill 29 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTILL 29 (40)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 444444444444443333
No 175
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.08 E-value=35 Score=21.59 Aligned_cols=42 Identities=31% Similarity=0.544 Sum_probs=30.0
Q ss_pred CCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
.....|+-|-..+...+.+.. -+..||.+|+ .|-.|+..|..
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a---~~~~wH~~CF--------~C~~C~~~L~~ 54 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCV---NGHFFHRSCF--------RCHTCEATLWP 54 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCB---TTBCCBTTTC--------BCSSSCCBCCT
T ss_pred CCCCCCcccCCCcccceEEEE---CCCeeCCCcC--------EEcCCCCCcCC
Confidence 345679999988866655532 5678999983 57888877754
No 176
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=40.01 E-value=68 Score=20.10 Aligned_cols=28 Identities=14% Similarity=0.326 Sum_probs=14.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 029206 35 ANFDTNMVIILAALLCALICALGLNSIV 62 (197)
Q Consensus 35 ~~~~~~~~iil~~~~~~~i~~l~i~~~~ 62 (197)
-.+|+-.+-+-..++..+++++++.++.
T Consensus 10 F~YDY~tLRigGLifA~vLfi~GI~iil 37 (67)
T 2jp3_A 10 FYYDWESLQLGGLIFGGLLCIAGIALAL 37 (67)
T ss_dssp GGGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHheecchhhHHHHHHHHHHHHH
Confidence 3444444555555555555555555554
No 177
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=39.48 E-value=18 Score=22.86 Aligned_cols=45 Identities=18% Similarity=0.439 Sum_probs=29.2
Q ss_pred ccccccccccCCceEEcCCCCCcccHhHHHHHHh-----CCCCCcccccC
Q 029206 114 CAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLM-----SHSSCPTCRRS 158 (197)
Q Consensus 114 C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~ 158 (197)
--||-..+..+...+..-.|.--||..|+.---. ..-.||.|+..
T Consensus 12 yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 12 YCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred EEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 3388877754444445545888899999853211 23459999754
No 178
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.48 E-value=31 Score=21.35 Aligned_cols=40 Identities=25% Similarity=0.590 Sum_probs=27.6
Q ss_pred CCccccccccccc--CCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCc
Q 029206 111 ATDCAICLVDFMD--GEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 111 ~~~C~ICl~~~~~--~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
...|+-|-..+.. ..... .. -+..||.+|+ .|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~-~a-~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFI-CF-QDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEE-EE-TTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeE-EE-CCcccCcccC--------ChhhCCCcCC
Confidence 3569999988874 22332 22 5678999984 5888888775
No 179
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.37 E-value=24 Score=21.40 Aligned_cols=40 Identities=23% Similarity=0.608 Sum_probs=27.8
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQ 162 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~ 162 (197)
...|.-|-..+.. +.+.. -+..||.+|+ .|-.|+.+|...
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIKA---MNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS-CCEEE---TTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecc-eEEEE---CcccccccCC--------EeCCCCCcCCCC
Confidence 4569999888763 33332 4678998884 588888877653
No 180
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=38.09 E-value=3.1 Score=22.72 Aligned_cols=15 Identities=13% Similarity=0.439 Sum_probs=9.6
Q ss_pred CCcccccccccccCC
Q 029206 111 ATDCAICLVDFMDGE 125 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~ 125 (197)
+..|+||+..+...+
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 355888877765543
No 181
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=37.92 E-value=7.5 Score=26.05 Aligned_cols=43 Identities=21% Similarity=0.445 Sum_probs=25.6
Q ss_pred CCCcccccccccccCCceEEcCCCC---CcccHhHHHHHHhC----CCCCcc-ccc
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCN---HGFHVRCIDTWLMS----HSSCPT-CRR 157 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~---H~FH~~Ci~~Wl~~----~~~CP~-CR~ 157 (197)
+...| ||-... .++ +...-.|. .-||..|+. |.. +-.||. |+.
T Consensus 25 ~~~yC-iC~~~~-~g~-MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVS-YGP-MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCC-SSS-EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCC-CCC-EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 34457 898653 344 33333454 579999985 322 234999 864
No 182
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=37.18 E-value=5.9 Score=25.07 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=14.6
Q ss_pred HHHHHhCCCCCcccccCCcC
Q 029206 142 IDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 142 i~~Wl~~~~~CP~CR~~v~~ 161 (197)
++.||..--.||+|+.++.-
T Consensus 3 md~~LLeiL~CP~ck~~L~~ 22 (67)
T 2jny_A 3 LDPQLLEVLACPKDKGPLRY 22 (67)
T ss_dssp SCGGGTCCCBCTTTCCBCEE
T ss_pred CCHHHHHHhCCCCCCCcCeE
Confidence 35667777789999987753
No 183
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=36.23 E-value=12 Score=27.41 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=15.9
Q ss_pred EcCCCCCcccHhHHHHHHhCCCCCcccccCC
Q 029206 129 VLPKCNHGFHVRCIDTWLMSHSSCPTCRRSL 159 (197)
Q Consensus 129 ~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v 159 (197)
....|||.|-.. .....||.|...+
T Consensus 134 ~C~~Cg~~~~~~------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 134 VCIGCGRKFSTL------PPGGVCPDCGSKV 158 (165)
T ss_dssp EESSSCCEESSC------CGGGBCTTTCCBE
T ss_pred ECCCCCCcccCC------CCCCcCCCCCCcc
Confidence 344588888643 2234799998765
No 184
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.22 E-value=19 Score=22.66 Aligned_cols=39 Identities=23% Similarity=0.403 Sum_probs=27.7
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCc
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
....|+-|-..+.. ..+ .. -+..||.+|+ .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~-~~~--~a-~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VFV--KL-RDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCS-SCE--EC-SSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccC-cEE--EE-CcceeCcCcC--------eeCCCCCCCC
Confidence 34679999988764 333 22 6788999985 5888887764
No 185
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=35.12 E-value=59 Score=20.39 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 029206 40 NMVIILAALLCALICALGLNSIVRCALRCSRR 71 (197)
Q Consensus 40 ~~~iil~~~~~~~i~~l~i~~~~~~~~r~~rr 71 (197)
.-.++++++++++.+++++.--.+|......|
T Consensus 19 igGLifA~vLfi~GI~iilS~kcrCk~~qk~~ 50 (67)
T 2jp3_A 19 LGGLIFGGLLCIAGIALALSGKCKCRRNHTPS 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHTCCTT
T ss_pred ecchhhHHHHHHHHHHHHHcCcccccCCCCCC
Confidence 34567777777777777777777887654433
No 186
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=34.76 E-value=24 Score=25.75 Aligned_cols=38 Identities=29% Similarity=0.734 Sum_probs=19.8
Q ss_pred cccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCc
Q 029206 113 DCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 113 ~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
.|..|-..+...+.+.. . -++.||.+|+ .|-.|+..+.
T Consensus 67 ~C~~C~~~I~~~~~v~~-a-~~~~~H~~CF--------~C~~C~~~L~ 104 (169)
T 2rgt_A 67 KCAACQLGIPPTQVVRR-A-QDFVYHLHCF--------ACVVCKRQLA 104 (169)
T ss_dssp BCTTTCCBCCTTSEEEE-E-TTEEEEGGGC--------BCTTTCCBCC
T ss_pred cccccccccCCCcEEEE-c-CCceEeeCCC--------cCCCCCCCCC
Confidence 46666555544333221 1 4556666664 5666666553
No 187
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=34.27 E-value=9.5 Score=24.19 Aligned_cols=41 Identities=27% Similarity=0.611 Sum_probs=28.3
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQ 162 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~ 162 (197)
...|+.|-..+..++.+.. -+..||.+|+ .|-.|+.++...
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~CF--------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCCF--------LCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSSE--------ECSSSCCEECSS
T ss_pred CCcCcCcCccccCceeEEe---CCcccccccC--------ccCCCCCCCCCC
Confidence 4569999988876665433 5678898884 477888777543
No 188
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=33.36 E-value=52 Score=21.01 Aligned_cols=29 Identities=14% Similarity=0.494 Sum_probs=16.1
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 029206 34 EANFDTNMVIILAALLCALICALGLNSIV 62 (197)
Q Consensus 34 ~~~~~~~~~iil~~~~~~~i~~l~i~~~~ 62 (197)
.-.+|+-.+-+-+.++..+++++++.++.
T Consensus 11 pF~YDY~tLRigGLifA~vLfi~GI~iil 39 (74)
T 2zxe_G 11 RFTYDYYRLRVVGLIVAAVLCVIGIIILL 39 (74)
T ss_dssp GGCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccchHHheeccchhHHHHHHHHHHHHH
Confidence 33455555555555555566666665554
No 189
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=33.27 E-value=93 Score=19.69 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=10.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Q 029206 37 FDTNMVIILAALLCALICALGLNSI 61 (197)
Q Consensus 37 ~~~~~~iil~~~~~~~i~~l~i~~~ 61 (197)
+|+-.+-+-..++..+++++++.++
T Consensus 11 YDY~tLRiGGLifA~vLfi~GI~ii 35 (72)
T 2jo1_A 11 YDYQSLQIGGLVIAGILFILGILIV 35 (72)
T ss_dssp CSTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhhccchHHHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 190
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=31.29 E-value=3.5 Score=26.81 Aligned_cols=14 Identities=21% Similarity=0.764 Sum_probs=12.8
Q ss_pred CCCCcccHhHHHHH
Q 029206 132 KCNHGFHVRCIDTW 145 (197)
Q Consensus 132 ~C~H~FH~~Ci~~W 145 (197)
.|+|.|+..|-..|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 59999999999887
No 191
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=31.10 E-value=11 Score=32.74 Aligned_cols=47 Identities=17% Similarity=0.352 Sum_probs=30.6
Q ss_pred cccccccccccCCceEEcCCCCCcccHhHHHHHH-----hCCCCCcccccCC
Q 029206 113 DCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWL-----MSHSSCPTCRRSL 159 (197)
Q Consensus 113 ~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~v 159 (197)
...||...+..+.....+-.|.--||..|+.--- ..+-.||.|+...
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLH 57 (447)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHH
T ss_pred eEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCcccc
Confidence 4558988775444445555698889999984211 1234699997644
No 192
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=30.44 E-value=27 Score=24.01 Aligned_cols=13 Identities=15% Similarity=0.156 Sum_probs=6.2
Q ss_pred CCcccHhHHHHHH
Q 029206 134 NHGFHVRCIDTWL 146 (197)
Q Consensus 134 ~H~FH~~Ci~~Wl 146 (197)
+..||..|....+
T Consensus 57 g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 57 SDIVCEQDIYEWT 69 (123)
T ss_dssp SSEEEGGGHHHHH
T ss_pred CEEEcHHHhHHHh
Confidence 3445555554443
No 193
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.17 E-value=45 Score=21.41 Aligned_cols=41 Identities=22% Similarity=0.508 Sum_probs=29.4
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQ 162 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~ 162 (197)
...|+-|-..+...+.+. . -+..||.+|+ .|-.|...|...
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL--A-NQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE--C-SSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CCcCccCCCccCCceeEE--E-CCCEECCCCC--------eeCCCCCCCCCC
Confidence 467999999887666543 2 6788999884 477787776543
No 194
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=28.22 E-value=5.3 Score=26.25 Aligned_cols=19 Identities=37% Similarity=0.948 Sum_probs=15.2
Q ss_pred EEcCCCCCcccHhHHHHHH
Q 029206 128 RVLPKCNHGFHVRCIDTWL 146 (197)
Q Consensus 128 ~~lp~C~H~FH~~Ci~~Wl 146 (197)
...+.|++.|+..|-..|=
T Consensus 44 v~C~~C~~~FC~~C~~~w~ 62 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQWE 62 (86)
T ss_dssp EECTTTCCEECSSSCSBCC
T ss_pred eEeCCCCCccccccCCchh
Confidence 4566799999999988873
No 195
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=27.85 E-value=24 Score=21.28 Aligned_cols=13 Identities=15% Similarity=0.521 Sum_probs=9.3
Q ss_pred CCccccccccccc
Q 029206 111 ATDCAICLVDFMD 123 (197)
Q Consensus 111 ~~~C~ICl~~~~~ 123 (197)
--.|+.|..+++.
T Consensus 10 iL~CP~c~~~L~~ 22 (56)
T 2kpi_A 10 ILACPACHAPLEE 22 (56)
T ss_dssp SCCCSSSCSCEEE
T ss_pred heeCCCCCCccee
Confidence 4569999887643
No 196
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=27.73 E-value=1.2e+02 Score=19.52 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029206 41 MVIILAALLCALICALGLNSIVRC 64 (197)
Q Consensus 41 ~~iil~~~~~~~i~~l~i~~~~~~ 64 (197)
..++.+++++.+++++++-++...
T Consensus 15 ~gvi~gilliGllllliwk~~~~i 38 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIWKLLITI 38 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555544444444443
No 197
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=27.62 E-value=6.3 Score=24.98 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=11.9
Q ss_pred HHHhCCCCCcccccCCcC
Q 029206 144 TWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 144 ~Wl~~~~~CP~CR~~v~~ 161 (197)
.||..--.||.|+.++.-
T Consensus 3 ~~LL~iL~CP~ck~~L~~ 20 (68)
T 2jr6_A 3 KKFLDILVCPVTKGRLEY 20 (68)
T ss_dssp CSSSCCCBCSSSCCBCEE
T ss_pred hHHhhheECCCCCCcCeE
Confidence 345555678888887643
No 198
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=27.23 E-value=33 Score=25.46 Aligned_cols=24 Identities=25% Similarity=0.492 Sum_probs=14.9
Q ss_pred eEEcCCCCCcccHhHHHHHHhCCCCCccccc
Q 029206 127 VRVLPKCNHGFHVRCIDTWLMSHSSCPTCRR 157 (197)
Q Consensus 127 i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 157 (197)
..+.+.|||++-. .....||+|..
T Consensus 138 ~~~C~~CG~i~~~-------~~p~~CP~Cg~ 161 (170)
T 3pwf_A 138 VYICPICGYTAVD-------EAPEYCPVCGA 161 (170)
T ss_dssp EEECTTTCCEEES-------CCCSBCTTTCC
T ss_pred eeEeCCCCCeeCC-------CCCCCCCCCCC
Confidence 3345558887752 23347999975
No 199
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=27.23 E-value=26 Score=24.27 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=16.8
Q ss_pred EcCCCCCcccHhHHHHHHhCCC-CCcccccCC
Q 029206 129 VLPKCNHGFHVRCIDTWLMSHS-SCPTCRRSL 159 (197)
Q Consensus 129 ~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~v 159 (197)
....|||.|-.+ .... .||.|....
T Consensus 75 ~C~~CG~~~e~~------~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 75 ECKDCSHVFKPN------ALDYGVCEKCHSKN 100 (119)
T ss_dssp ECSSSSCEECSC------CSTTCCCSSSSSCC
T ss_pred EcCCCCCEEeCC------CCCCCcCccccCCC
Confidence 333599988752 2346 799998764
No 200
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.12 E-value=54 Score=20.42 Aligned_cols=41 Identities=32% Similarity=0.583 Sum_probs=27.4
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
...|+-|-..+..++.+. . .=+..||.+|+ .|-.|+.+|..
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~-a~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSREL-F-YEDRHFHEGCF--------RCCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCCBCCSSCCBC-C-CSSCCCBTTTS--------BCTTTCCBCSS
T ss_pred CCcCccCCCccccCcEEE-E-eCCccccccCC--------eecCCCCccCC
Confidence 346999988887433332 1 14678998883 48888887753
No 201
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*
Probab=26.10 E-value=24 Score=29.24 Aligned_cols=14 Identities=14% Similarity=0.162 Sum_probs=5.8
Q ss_pred CCCCcCCCCCCCCc
Q 029206 25 SRTRSTVSNEANFD 38 (197)
Q Consensus 25 ~~~~~~~~~~~~~~ 38 (197)
...+|.++....|.
T Consensus 319 ~g~WSeWS~~~~~~ 332 (380)
T 3lb6_C 319 DGIWSEWSDKQCWE 332 (380)
T ss_dssp SCCCCCCCCC----
T ss_pred CCCCCCCCCCEEEe
Confidence 34466666665443
No 202
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=25.87 E-value=26 Score=25.91 Aligned_cols=25 Identities=8% Similarity=0.167 Sum_probs=10.4
Q ss_pred CCcccHhHHHHHHhCCCCCcccccCCc
Q 029206 134 NHGFHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 134 ~H~FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
+..||..|..+ +-...|..|...|.
T Consensus 106 g~~yC~~~y~~--~f~~kC~~C~~~I~ 130 (182)
T 2jtn_A 106 ESVYCKDDFFK--RFGTKCAACQLGIP 130 (182)
T ss_dssp TEEECHHHHHH--TTSCCCTTTCCCCC
T ss_pred CEeeecCcccc--ccccccccCCCccC
Confidence 34444444433 11234555544443
No 203
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=25.37 E-value=23 Score=21.58 Aligned_cols=13 Identities=23% Similarity=0.802 Sum_probs=8.8
Q ss_pred CCCCcccccCCcC
Q 029206 149 HSSCPTCRRSLLD 161 (197)
Q Consensus 149 ~~~CP~CR~~v~~ 161 (197)
.+.||.|+..|..
T Consensus 6 ~k~CP~C~~~Iek 18 (60)
T 1wd2_A 6 TKECPKCHVTIEK 18 (60)
T ss_dssp CCCCTTTCCCCSS
T ss_pred ceECcCCCCeeEe
Confidence 3568888777754
No 204
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=25.31 E-value=69 Score=20.73 Aligned_cols=25 Identities=16% Similarity=0.495 Sum_probs=13.1
Q ss_pred CCcccHhHHHHHHhCCCCCcccccCCc
Q 029206 134 NHGFHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 134 ~H~FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
+..|+..|..+ .-...|..|...|.
T Consensus 53 g~~yC~~cy~~--~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 53 NKILCNKCTTR--EDSPKCKGCFKAIV 77 (101)
T ss_dssp TEEECHHHHTT--CCCCBCSSSCCBCC
T ss_pred CEEEChhHhhh--hcCCccccCCCccc
Confidence 34555555432 12345777766664
No 205
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=24.98 E-value=60 Score=19.88 Aligned_cols=40 Identities=28% Similarity=0.572 Sum_probs=28.1
Q ss_pred CCccccccccccc---C-CceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 111 ATDCAICLVDFMD---G-EKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 111 ~~~C~ICl~~~~~---~-~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
...|+-|-..+.. . ..+.. =+..||.+|+ .|-.|+.++..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a---~~~~~H~~CF--------~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAY---EGQSWHDYCF--------HCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEE---TTEEEETTTC--------BCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCceeEEE---CcceeCcccC--------EehhcCCCCCC
Confidence 3579999988874 2 33332 4678998883 58899888853
No 206
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.39 E-value=63 Score=22.06 Aligned_cols=47 Identities=9% Similarity=0.008 Sum_probs=31.4
Q ss_pred ccccccccccc-CCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 113 DCAICLVDFMD-GEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 113 ~C~ICl~~~~~-~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
.|..|-..+.+ +.... .. =+..||..|...-+..+..|-.|...|..
T Consensus 34 ~C~~C~~~L~~~~~~~~-~~-~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSSY-TK-SGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp CCSSSCCCTTTSEECCE-EE-TTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CcCCCCCcccccCCeEE-EE-CCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 57778777642 12222 21 46678899988866555589999988864
No 207
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=24.27 E-value=6.3 Score=24.97 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=10.5
Q ss_pred HHhCCCCCcccccCCcC
Q 029206 145 WLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 145 Wl~~~~~CP~CR~~v~~ 161 (197)
||..--.||.|+.++.-
T Consensus 4 ~LL~iL~CP~ck~~L~~ 20 (68)
T 2hf1_A 4 KFLEILVCPLCKGPLVF 20 (68)
T ss_dssp CCEEECBCTTTCCBCEE
T ss_pred HHhhheECCCCCCcCeE
Confidence 34444568888877643
No 208
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.22 E-value=68 Score=19.16 Aligned_cols=38 Identities=24% Similarity=0.599 Sum_probs=26.6
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCc
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
...|+-|-..+.. +.+ .. -+..||.+|+ .|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~-~~~--~a-~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITT-GGV--TY-REQPWHKECF--------VCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCS-SEE--ES-SSSEEETTTS--------BCSSSCCBCT
T ss_pred CCCCcccCCeecc-ceE--EE-CccccCCCCC--------ccCCCCCcCC
Confidence 3569999888764 333 22 5778998884 5888888774
No 209
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.17 E-value=70 Score=19.84 Aligned_cols=39 Identities=28% Similarity=0.556 Sum_probs=27.4
Q ss_pred CcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcCC
Q 029206 112 TDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQ 162 (197)
Q Consensus 112 ~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~~ 162 (197)
..|+-|-..+. ++.+.. -+..||.+|+ .|-.|++++...
T Consensus 16 ~~C~~C~~~I~-~~~v~a---~~~~wH~~CF--------~C~~C~~~L~~~ 54 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVSA---LGKTYHPDCF--------VCAVCRLPFPPG 54 (81)
T ss_dssp CBCTTTCCBCC-SCCEEE---TTEEECTTTS--------SCSSSCCCCCSS
T ss_pred CcCccccCEec-cceEEE---CCceeCccCC--------ccccCCCCCCCC
Confidence 47999998876 333332 5678998884 478888877543
No 210
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.30 E-value=84 Score=19.99 Aligned_cols=40 Identities=18% Similarity=0.432 Sum_probs=28.5
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
....|+-|-..+. ++.+. . -+..||.+|+ .|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~-~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLV--A-LGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEE--E-TTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCCccCCCEec-ceEEE--E-CCccccccCC--------ccCCCCCCCCC
Confidence 3567999998884 33333 2 5788998884 68889888764
No 211
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=23.13 E-value=6.8 Score=24.96 Aligned_cols=16 Identities=31% Similarity=0.702 Sum_probs=9.5
Q ss_pred HHhCCCCCcccccCCc
Q 029206 145 WLMSHSSCPTCRRSLL 160 (197)
Q Consensus 145 Wl~~~~~CP~CR~~v~ 160 (197)
||..--.||.|+.++.
T Consensus 4 ~LL~iL~CP~ck~~L~ 19 (70)
T 2js4_A 4 RLLDILVCPVCKGRLE 19 (70)
T ss_dssp CCCCCCBCTTTCCBEE
T ss_pred HHhhheECCCCCCcCE
Confidence 3444456777777654
No 212
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.30 E-value=81 Score=20.02 Aligned_cols=41 Identities=20% Similarity=0.397 Sum_probs=29.0
Q ss_pred CCCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 109 IKATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 109 ~~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
.....|.-|-..+.. ..+ .. -+..||.+|+ .|-.|+..|..
T Consensus 23 ~~~~~C~~C~~~I~~-~~~--~a-~~~~~H~~CF--------~C~~C~~~L~~ 63 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG-AVV--KA-RDKYRHPECF--------VCADCNLNLKQ 63 (89)
T ss_dssp CSCCBCTTTCCBCCS-CCE--ES-SSCEECTTTC--------CCSSSCCCTTT
T ss_pred CcCCCcccCCCEecc-cEE--EE-CCceECccCC--------EecCCCCCCCC
Confidence 344679999988764 333 22 6788999983 58889888754
No 213
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=22.28 E-value=67 Score=18.97 Aligned_cols=39 Identities=23% Similarity=0.543 Sum_probs=27.6
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
...|+-|-..+. ++. +.. -+..||.+|+ .|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~-~~~--~~a-~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRV--VNA-MGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCE--ECC-TTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceE--EEE-CccccccCcC--------EECCCCCCCCC
Confidence 456999988886 332 232 5778998883 58889888753
No 214
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=21.64 E-value=49 Score=25.22 Aligned_cols=25 Identities=24% Similarity=0.558 Sum_probs=15.3
Q ss_pred eEEcCCCCCcccHhHHHHHHhCCCCCcccccC
Q 029206 127 VRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRS 158 (197)
Q Consensus 127 i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 158 (197)
..+++.|||++- . .....||+|..+
T Consensus 171 ~~~C~~CG~i~~-g------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHK-G------EDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEE-S------SCCSBCTTTCCB
T ss_pred EEEECCCCCEEc-C------cCCCCCCCCCCC
Confidence 444555998854 2 122479999754
No 215
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=21.33 E-value=65 Score=22.23 Aligned_cols=39 Identities=26% Similarity=0.458 Sum_probs=28.5
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCc
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
...|+-|-..+.....+.. -+..||.+| -.|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCccc
Confidence 4579999988765433433 567899988 35889988885
No 216
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.24 E-value=47 Score=21.42 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=22.1
Q ss_pred CCCCCccccccccccc-CCceEEcCCCCCcccHhH
Q 029206 108 KIKATDCAICLVDFMD-GEKVRVLPKCNHGFHVRC 141 (197)
Q Consensus 108 ~~~~~~C~ICl~~~~~-~~~i~~lp~C~H~FH~~C 141 (197)
...+..|+.|...|-- .+.-...+.|+|..+.+|
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 4567789999988742 112223345888888777
No 217
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=20.89 E-value=1.1e+02 Score=16.27 Aligned_cols=8 Identities=13% Similarity=-0.164 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 029206 57 GLNSIVRC 64 (197)
Q Consensus 57 ~i~~~~~~ 64 (197)
++.+.+++
T Consensus 22 ~i~~~vy~ 29 (33)
T 2l34_A 22 LIALAVYF 29 (33)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 33333333
No 218
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=20.82 E-value=34 Score=25.77 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=12.8
Q ss_pred CCCCCcccHhHHHHHHhCCCCCcccccC
Q 029206 131 PKCNHGFHVRCIDTWLMSHSSCPTCRRS 158 (197)
Q Consensus 131 p~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 158 (197)
+.|||++-.+ .....||+|..+
T Consensus 159 ~~CG~~~~g~------~~p~~CP~C~~~ 180 (191)
T 1lko_A 159 RNCGYVHEGT------GAPELCPACAHP 180 (191)
T ss_dssp TTTCCEEEEE------ECCSBCTTTCCB
T ss_pred CCCCCEeeCC------CCCCCCCCCcCC
Confidence 3477775422 122379999764
No 219
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=20.75 E-value=64 Score=22.04 Aligned_cols=47 Identities=13% Similarity=0.325 Sum_probs=24.1
Q ss_pred Cccccccccccc-CCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCc
Q 029206 112 TDCAICLVDFMD-GEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 112 ~~C~ICl~~~~~-~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
..|..|-..+.. +...... =+..|+..|...-+.....|..|...|.
T Consensus 30 F~C~~C~~~L~~~~~~~~~~--~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 30 LSCDLCGCRLGEVGRRLYYK--LGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp CBCTTTCCBCSSTTCCEEEE--TTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred cccCcCCCccccCCCeEEEE--CCEEeecCchhhhCCCccChhhcCCccC
Confidence 346666666542 1222221 3456666666664333336777766664
No 220
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.22 E-value=1e+02 Score=19.08 Aligned_cols=40 Identities=18% Similarity=0.376 Sum_probs=28.4
Q ss_pred CCCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCcC
Q 029206 110 KATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLD 161 (197)
Q Consensus 110 ~~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~~ 161 (197)
....|+-|-..+. +..+ . .-+..||.+|+ +|-.|+.+|..
T Consensus 14 ~~~~C~~C~~~I~-~~~v--~-a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPL--I-FKNDPYHPDHF--------NCANCGKELTA 53 (79)
T ss_dssp CCCBCTTTCCBCC-SCCC--C-CSSSCCCTTTS--------BCSSSCCBCCT
T ss_pred CCCCCccCCCEec-ceEE--E-ECcceeCCCCC--------EeCCCCCccCC
Confidence 3467999998877 3333 2 26788998883 68889888764
No 221
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.16 E-value=1.1e+02 Score=18.14 Aligned_cols=38 Identities=21% Similarity=0.605 Sum_probs=26.7
Q ss_pred CCcccccccccccCCceEEcCCCCCcccHhHHHHHHhCCCCCcccccCCc
Q 029206 111 ATDCAICLVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLL 160 (197)
Q Consensus 111 ~~~C~ICl~~~~~~~~i~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~v~ 160 (197)
...|+-|-..+.. +.+.. -+..||.+|+ .|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGITY---QDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT-TCEEE---TTEEECTTTT--------BCTTTCCBCT
T ss_pred cCCCcccCCEeCc-ceEEE---CccccccCcC--------EECCCCCCCC
Confidence 4569999888753 34433 4678998884 5888888875
Done!