Query 029207
Match_columns 197
No_of_seqs 310 out of 1320
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 14:57:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029207.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029207hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oqy_A HHR23A, UV excision rep 100.0 1.9E-38 6.5E-43 277.8 20.2 187 1-193 8-205 (368)
2 3m62_B UV excision repair prot 99.9 7.6E-22 2.6E-26 144.5 8.6 77 1-80 2-78 (106)
3 1uel_A HHR23B, UV excision rep 99.8 2.6E-20 8.8E-25 133.5 12.0 78 1-81 1-81 (95)
4 4dwf_A HLA-B-associated transc 99.8 1.1E-20 3.7E-25 133.7 9.7 76 1-80 6-81 (90)
5 3phx_B Ubiquitin-like protein 99.8 1.9E-20 6.5E-25 129.2 10.4 74 1-77 5-78 (79)
6 4fbj_B NEDD8; effector-HOST ta 99.8 1.8E-20 6.2E-25 132.5 10.5 79 1-82 1-79 (88)
7 3plu_A Ubiquitin-like modifier 99.8 2.6E-20 8.9E-25 132.7 9.4 70 1-73 22-91 (93)
8 2wyq_A HHR23A, UV excision rep 99.8 4.7E-20 1.6E-24 128.7 10.3 75 1-78 6-83 (85)
9 3v6c_B Ubiquitin; structural g 99.8 4.2E-20 1.4E-24 131.2 10.0 74 1-77 18-91 (91)
10 4a20_A Ubiquitin-like protein 99.8 2.5E-20 8.7E-25 134.7 8.7 74 1-77 20-97 (98)
11 2kk8_A Uncharacterized protein 99.8 3.7E-20 1.3E-24 130.1 9.1 72 1-75 11-83 (84)
12 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 1.2E-19 4.1E-24 129.7 10.9 77 1-80 2-78 (96)
13 2lxa_A Ubiquitin-like protein 99.8 2.5E-20 8.7E-25 131.9 7.0 73 1-76 2-78 (87)
14 4hcn_B Polyubiquitin, ubiquiti 99.8 1.5E-19 5.2E-24 130.2 10.3 75 1-78 23-97 (98)
15 1wx7_A Ubiquilin 3; ubiquitin- 99.8 1.9E-19 6.6E-24 131.4 10.9 76 1-80 18-93 (106)
16 1ndd_A NEDD8, protein (ubiquit 99.8 2.7E-19 9.1E-24 121.8 10.8 74 1-77 1-74 (76)
17 3dbh_I NEDD8; cell cycle, acti 99.8 1.3E-19 4.4E-24 127.2 9.2 75 1-78 13-87 (88)
18 1uh6_A Ubiquitin-like 5; beta- 99.8 6E-20 2.1E-24 132.9 7.5 71 1-74 29-99 (100)
19 2faz_A Ubiquitin-like containi 99.8 2E-19 6.7E-24 123.7 9.7 73 1-76 3-77 (78)
20 3a9j_A Ubiquitin; protein comp 99.8 4.8E-19 1.6E-23 120.5 10.9 74 1-77 1-74 (76)
21 1ttn_A DC-UBP, dendritic cell- 99.8 1.7E-19 5.7E-24 131.9 9.0 77 1-80 24-100 (106)
22 4eew_A Large proline-rich prot 99.8 2.3E-19 7.8E-24 126.3 9.4 71 1-75 18-88 (88)
23 3n3k_B Ubiquitin; hydrolase, p 99.8 2.6E-19 8.8E-24 124.7 9.5 76 1-79 4-79 (85)
24 2dzi_A Ubiquitin-like protein 99.8 3.2E-19 1.1E-23 123.2 9.6 73 1-76 8-80 (81)
25 3mtn_B UBA80, ubcep1, ubiquiti 99.8 4.6E-19 1.6E-23 123.3 10.1 76 1-79 4-79 (85)
26 1wy8_A NP95-like ring finger p 99.8 6.2E-19 2.1E-23 124.2 10.6 77 1-80 8-86 (89)
27 2uyz_B Small ubiquitin-related 99.8 2.7E-19 9.3E-24 123.4 8.3 74 1-77 4-77 (79)
28 1sif_A Ubiquitin; hydrophobic 99.8 6E-19 2.1E-23 124.6 10.2 75 1-78 10-84 (88)
29 1wgd_A Homocysteine-responsive 99.8 4.3E-19 1.5E-23 126.5 9.5 77 1-80 8-90 (93)
30 2hj8_A Interferon-induced 17 k 99.8 2.6E-19 9E-24 126.4 8.0 75 1-78 5-79 (88)
31 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 7E-19 2.4E-23 123.4 9.7 75 1-78 8-82 (87)
32 2kan_A Uncharacterized protein 99.8 8.8E-19 3E-23 125.5 9.8 75 1-79 16-91 (94)
33 1wyw_B Ubiquitin-like protein 99.8 5.5E-19 1.9E-23 127.1 8.6 75 1-78 22-96 (97)
34 1v5o_A 1700011N24RIK protein; 99.8 9.6E-19 3.3E-23 127.0 10.0 77 1-80 8-89 (102)
35 2bwf_A Ubiquitin-like protein 99.8 1.3E-18 4.5E-23 118.9 10.1 71 1-75 5-75 (77)
36 1wia_A Hypothetical ubiquitin- 99.8 1E-18 3.6E-23 124.9 10.0 74 1-80 8-82 (95)
37 1v2y_A 3300001G02RIK protein; 99.8 3.1E-19 1E-23 130.4 7.1 76 1-79 8-99 (105)
38 1yx5_B Ubiquitin; proteasome, 99.8 1.9E-18 6.6E-23 124.2 10.9 76 1-79 1-76 (98)
39 1wju_A NEDD8 ultimate buster-1 99.8 9.2E-19 3.1E-23 126.7 8.9 72 2-76 17-92 (100)
40 3vdz_A Ubiquitin-40S ribosomal 99.8 1.5E-18 5.3E-23 127.8 10.3 75 1-78 36-110 (111)
41 2klc_A Ubiquilin-1; ubiquitin- 99.8 2E-18 6.9E-23 125.1 10.4 74 1-78 26-99 (101)
42 1yqb_A Ubiquilin 3; structural 99.8 1.5E-18 5.1E-23 125.7 9.1 76 1-80 23-98 (100)
43 1wgh_A Ubiquitin-like 3, HCG-1 99.8 4.7E-18 1.6E-22 126.2 11.9 76 1-77 17-100 (116)
44 1wx8_A Riken cDNA 4931431F19; 99.8 7.9E-19 2.7E-23 125.6 7.4 75 1-79 18-92 (96)
45 1j8c_A Ubiquitin-like protein 99.8 2.6E-18 8.8E-23 129.3 10.3 76 1-80 33-108 (125)
46 3b1l_X E3 ubiquitin-protein li 99.6 5.2E-20 1.8E-24 125.9 0.0 74 1-77 1-74 (76)
47 2l7r_A Ubiquitin-like protein 99.8 3.3E-18 1.1E-22 122.1 9.3 72 1-77 20-91 (93)
48 3l0w_B Monoubiquitinated proli 99.8 6.8E-18 2.3E-22 133.1 11.7 77 1-80 1-77 (169)
49 1wgg_A Ubiquitin carboxyl-term 99.7 4.1E-18 1.4E-22 122.5 8.7 72 1-77 8-80 (96)
50 1x1m_A Ubiquitin-like protein 99.7 7.4E-18 2.5E-22 123.3 9.6 75 1-78 13-102 (107)
51 2ojr_A Ubiquitin; lanthide-bin 99.7 1.4E-17 4.8E-22 122.5 10.7 74 1-77 36-109 (111)
52 3m63_B Ubiquitin domain-contai 99.7 2.5E-18 8.5E-23 124.7 5.7 72 1-76 29-100 (101)
53 2gow_A HCG-1 protein, ubiquiti 99.7 9E-18 3.1E-22 126.3 8.8 74 1-77 18-101 (125)
54 1se9_A Ubiquitin family; ubiqu 99.7 1.2E-17 4.1E-22 125.5 9.4 79 1-79 17-106 (126)
55 2kdi_A Ubiquitin, vacuolar pro 99.7 2.7E-17 9.3E-22 121.7 11.2 76 1-79 10-85 (114)
56 3rt3_B Ubiquitin-like protein 99.7 1.7E-17 5.8E-22 128.7 10.3 75 1-78 82-156 (159)
57 2fnj_B Transcription elongatio 99.7 8.2E-18 2.8E-22 125.0 8.0 72 1-75 1-80 (118)
58 2kdb_A Homocysteine-responsive 99.7 5.3E-18 1.8E-22 122.7 6.8 71 1-73 24-99 (99)
59 4ajy_B Transcription elongatio 99.7 1.2E-17 4.1E-22 123.9 8.5 73 1-76 1-81 (118)
60 1wxv_A BAG-family molecular ch 99.7 2.6E-17 8.9E-22 116.9 9.7 73 1-77 8-86 (92)
61 1we6_A Splicing factor, putati 99.7 1.6E-17 5.5E-22 122.2 8.6 76 1-79 28-107 (111)
62 1v5t_A 8430435I17RIK protein; 99.7 2E-17 7E-22 117.3 8.8 72 1-76 8-83 (90)
63 3q3f_A Ribonuclease/ubiquitin 99.7 2.3E-17 7.8E-22 132.2 9.6 77 1-80 106-182 (189)
64 3u30_A Ubiquitin, linear DI-ub 99.7 4E-17 1.4E-21 128.4 10.4 75 1-78 21-95 (172)
65 2kd0_A LRR repeats and ubiquit 99.7 4.5E-17 1.5E-21 114.4 9.4 70 3-75 14-83 (85)
66 2daf_A FLJ35834 protein; hypot 99.7 4E-17 1.4E-21 120.6 9.1 74 2-78 17-91 (118)
67 3rt3_B Ubiquitin-like protein 99.7 5.6E-17 1.9E-21 125.7 10.3 73 1-76 3-77 (159)
68 4dbg_A Ranbp-type and C3HC4-ty 99.7 6.5E-17 2.2E-21 117.9 9.9 73 1-76 25-100 (105)
69 1v86_A DNA segment, CHR 7, way 99.7 2.2E-17 7.5E-22 118.4 6.4 71 1-76 18-88 (95)
70 3u5e_m 60S ribosomal protein L 99.7 1.5E-18 5.1E-23 130.9 0.0 76 1-79 1-76 (128)
71 1ify_A HHR23A, UV excision rep 99.7 2.2E-17 7.5E-22 104.6 4.5 45 146-193 1-45 (49)
72 3b08_A Polyubiquitin-C, ubiqui 99.7 2.2E-16 7.4E-21 120.8 11.0 74 1-77 1-74 (152)
73 3b08_A Polyubiquitin-C, ubiqui 99.7 3E-16 1E-20 119.9 10.5 75 1-78 77-151 (152)
74 1we7_A SF3A1 protein; structur 99.7 2.2E-16 7.5E-21 116.8 9.4 76 1-79 26-111 (115)
75 3u30_A Ubiquitin, linear DI-ub 99.7 1.5E-16 5.3E-21 125.0 9.0 75 1-78 97-171 (172)
76 3u5c_f 40S ribosomal protein S 99.7 8.6E-18 2.9E-22 130.4 1.1 77 1-80 1-77 (152)
77 2dzj_A Synaptic glycoprotein S 99.6 1.5E-16 5.3E-21 112.5 5.9 69 1-72 11-85 (88)
78 3ai5_A Yeast enhanced green fl 99.6 1.6E-15 5.4E-20 129.6 9.9 74 1-77 234-307 (307)
79 2dzm_A FAS-associated factor 1 99.6 8.5E-16 2.9E-20 111.2 6.5 72 1-76 9-82 (100)
80 4b6w_A Tubulin-specific chaper 99.6 1.5E-15 5.1E-20 107.0 6.4 73 2-77 4-85 (86)
81 1wf9_A NPL4 family protein; be 99.6 3.2E-15 1.1E-19 109.3 7.2 71 1-75 8-94 (107)
82 2kjr_A CG11242; UBL, ubiquitin 99.6 8.6E-15 2.9E-19 105.0 8.9 70 1-73 16-93 (95)
83 2xzm_9 RPS31E; ribosome, trans 99.5 4.9E-16 1.7E-20 124.1 0.3 71 1-79 1-71 (189)
84 2kj6_A Tubulin folding cofacto 99.5 1.7E-14 5.8E-19 103.8 8.0 71 2-75 16-95 (97)
85 1v6e_A Cytoskeleton-associated 99.5 2.6E-14 9E-19 102.1 8.4 73 1-76 8-88 (95)
86 2kzr_A Ubiquitin thioesterase 99.5 3.6E-14 1.2E-18 99.5 7.3 71 1-75 1-77 (86)
87 2io1_B Small ubiquitin-related 99.5 7.3E-14 2.5E-18 99.9 8.9 76 1-79 8-83 (94)
88 1vg5_A RSGI RUH-014, rhomboid 99.5 2.2E-14 7.4E-19 97.8 5.8 41 150-193 26-66 (73)
89 2g3q_A Protein YBL047C; endocy 99.5 3.9E-14 1.3E-18 87.1 5.4 38 153-193 4-41 (43)
90 2jy5_A Ubiquilin-1; UBA, alter 99.5 5.9E-14 2E-18 89.7 6.4 41 150-193 9-50 (52)
91 2bwb_A Ubiquitin-like protein 99.5 5.3E-14 1.8E-18 87.7 5.4 39 152-193 6-45 (46)
92 1wm3_A Ubiquitin-like protein 99.5 3.4E-13 1.2E-17 91.6 9.3 71 1-74 2-72 (72)
93 1vej_A Riken cDNA 4931431F19; 99.5 1.1E-13 3.8E-18 94.4 6.7 41 150-193 26-67 (74)
94 1t0y_A Tubulin folding cofacto 99.5 2.2E-13 7.6E-18 101.7 8.6 74 1-77 7-88 (122)
95 3shq_A UBLCP1; phosphatase, hy 99.4 7.8E-14 2.7E-18 120.0 6.7 72 1-76 6-80 (320)
96 1wgn_A UBAP1, ubiquitin associ 99.4 6.5E-14 2.2E-18 90.9 4.5 37 154-193 20-56 (63)
97 2knz_A Ubiquilin-4; cytoplasm, 99.4 8.7E-14 3E-18 89.3 5.0 40 151-193 9-49 (53)
98 2io0_B Small ubiquitin-related 99.4 5.5E-13 1.9E-17 94.8 9.3 75 1-78 6-80 (91)
99 1z96_A DNA-damage, UBA-domain 99.4 1.9E-13 6.4E-18 82.5 5.4 39 151-192 2-40 (40)
100 1veg_A NEDD8 ultimate buster-1 99.4 1.2E-13 4.1E-18 96.1 5.0 38 153-193 29-66 (83)
101 3a4r_A Nfatc2-interacting prot 99.4 1.2E-12 4.1E-17 90.6 9.5 70 1-73 8-78 (79)
102 1wji_A Tudor domain containing 99.4 2.1E-13 7.1E-18 90.5 4.9 38 153-193 9-46 (63)
103 1wr1_B Ubiquitin-like protein 99.4 2.2E-13 7.6E-18 88.8 4.8 40 151-193 15-55 (58)
104 2d07_B Ubiquitin-like protein 99.4 1.3E-12 4.4E-17 93.2 9.2 74 1-77 18-91 (93)
105 1wiv_A UBP14, ubiquitin-specif 99.4 2.5E-13 8.6E-18 92.7 4.8 38 153-193 29-66 (73)
106 2dak_A Ubiquitin carboxyl-term 99.4 2.5E-13 8.5E-18 90.2 4.1 38 153-193 9-46 (63)
107 2ekk_A UBA domain from E3 ubiq 99.4 3.2E-13 1.1E-17 84.5 4.4 37 153-193 9-45 (47)
108 1wz0_A Ubiquitin-like protein 99.4 1.6E-12 5.6E-17 94.5 8.6 75 1-78 25-99 (104)
109 2cpw_A CBL-interacting protein 99.4 4.3E-13 1.5E-17 89.3 3.9 40 153-195 19-60 (64)
110 2dna_A Unnamed protein product 99.4 7.2E-13 2.5E-17 88.5 5.0 40 151-193 17-57 (67)
111 2k8h_A Small ubiquitin protein 99.3 2.5E-12 8.5E-17 94.5 7.1 75 1-78 27-101 (110)
112 2crn_A Ubash3A protein; compac 99.3 6.8E-13 2.3E-17 88.3 3.6 41 150-193 6-47 (64)
113 2eke_C Ubiquitin-like protein 99.3 5.2E-12 1.8E-16 92.1 8.5 73 1-77 32-104 (106)
114 2dag_A Ubiquitin carboxyl-term 99.3 1.5E-12 5.2E-17 89.0 4.8 38 153-193 9-47 (74)
115 2dai_A Ubadc1, ubiquitin assoc 99.3 4.4E-12 1.5E-16 88.5 7.0 38 153-193 29-66 (83)
116 2dah_A Ubiquilin-3; UBA domain 99.3 2.2E-12 7.7E-17 82.9 5.0 41 152-195 8-50 (54)
117 1whc_A RSGI RUH-027, UBA/UBX 3 99.3 1E-12 3.5E-17 87.5 3.3 37 154-193 10-47 (64)
118 2dkl_A Trinucleotide repeat co 99.2 1.2E-11 3.9E-16 86.7 5.8 38 153-193 21-58 (85)
119 1vek_A UBP14, ubiquitin-specif 99.2 7.8E-12 2.7E-16 87.5 4.8 38 153-193 29-67 (84)
120 1wjn_A Tubulin-folding protein 99.2 3.6E-11 1.2E-15 85.9 8.0 72 2-76 11-93 (97)
121 1dv0_A DNA repair protein HHR2 99.2 3.7E-12 1.3E-16 79.6 2.4 42 151-195 2-44 (47)
122 2ooa_A E3 ubiquitin-protein li 99.1 4.7E-11 1.6E-15 74.9 5.1 38 153-193 11-48 (52)
123 2d9s_A CBL E3 ubiquitin protei 99.1 1E-10 3.5E-15 73.8 5.2 38 153-193 9-46 (53)
124 2lbc_A Ubiquitin carboxyl-term 99.1 8.6E-11 3E-15 88.1 5.7 40 153-195 78-118 (126)
125 2cwb_A Chimera of immunoglobul 99.1 7.6E-11 2.6E-15 85.9 4.7 39 152-193 65-104 (108)
126 3kyd_D Small ubiquitin-related 99.1 5.7E-10 2E-14 82.3 9.5 73 1-76 41-113 (115)
127 2oo9_A E3 ubiquitin-protein li 99.0 4.3E-10 1.5E-14 68.5 5.4 41 150-193 1-41 (46)
128 4ae4_A Ubiquitin-associated pr 99.0 3.3E-10 1.1E-14 84.0 4.8 39 152-193 75-113 (118)
129 2juj_A E3 ubiquitin-protein li 99.0 4.5E-10 1.6E-14 70.9 4.4 38 153-193 7-44 (56)
130 3pge_A SUMO-modified prolifera 98.9 7.5E-09 2.6E-13 83.2 9.2 76 1-80 30-105 (200)
131 3tix_A Ubiquitin-like protein 98.8 7.3E-09 2.5E-13 82.4 7.2 75 1-79 58-132 (207)
132 2pjh_A Protein NPL4, nuclear p 98.8 3.6E-09 1.2E-13 73.1 4.3 69 1-73 5-78 (80)
133 3k9o_A Ubiquitin-conjugating e 98.8 5.4E-09 1.9E-13 84.1 4.6 42 149-193 159-200 (201)
134 3goe_A DNA repair protein RAD6 98.7 9.2E-08 3.1E-12 65.2 9.3 70 2-74 11-81 (82)
135 4ae4_A Ubiquitin-associated pr 98.7 1.8E-08 6.3E-13 74.6 5.1 40 151-193 6-45 (118)
136 2cp8_A NEXT to BRCA1 gene 1 pr 98.6 3.8E-08 1.3E-12 62.6 5.1 40 151-193 7-47 (54)
137 2jxx_A Nfatc2-interacting prot 98.6 2.5E-07 8.5E-12 66.2 8.7 70 1-73 26-96 (97)
138 2lbc_A Ubiquitin carboxyl-term 98.6 3.4E-08 1.2E-12 73.8 3.6 37 154-193 4-41 (126)
139 3v7o_A Minor nucleoprotein VP3 98.6 7.8E-09 2.7E-13 83.3 0.0 74 1-78 22-95 (227)
140 1wj7_A Hypothetical protein (R 98.5 9.8E-08 3.4E-12 68.6 5.3 40 151-193 37-77 (104)
141 2qsf_X RAD23, UV excision repa 98.5 1.4E-07 4.7E-12 73.9 4.8 41 150-193 127-167 (171)
142 2cos_A Serine/threonine protei 98.5 2E-07 7E-12 58.8 4.5 38 153-193 9-47 (54)
143 2l76_A Nfatc2-interacting prot 98.4 1.8E-06 6.3E-11 61.1 9.0 72 1-76 22-93 (95)
144 1oqy_A HHR23A, UV excision rep 98.4 5.8E-08 2E-12 84.8 1.3 43 151-196 323-366 (368)
145 4efo_A Serine/threonine-protei 98.3 3E-06 1E-10 60.1 8.9 69 3-74 15-87 (94)
146 3uf8_A Ubiquitin-like protein 98.3 2.3E-06 7.7E-11 69.1 8.4 74 2-79 23-96 (209)
147 2al3_A TUG long isoform; TUG U 98.2 7.8E-06 2.7E-10 57.3 8.4 75 1-78 10-84 (90)
148 3e46_A Ubiquitin-conjugating e 98.2 1.4E-06 4.6E-11 72.5 4.8 42 149-193 211-252 (253)
149 3ix6_A TS, tsase, thymidylate 98.1 4.1E-07 1.4E-11 78.9 0.0 72 1-76 22-93 (360)
150 2kc2_A Talin-1, F1; FERM, adhe 98.1 7.3E-06 2.5E-10 61.3 6.4 69 2-73 13-120 (128)
151 2bps_A YUKD protein; ubiquitin 98.1 7.8E-06 2.7E-10 56.4 6.1 70 2-72 6-80 (81)
152 4da1_A Protein phosphatase 1K, 97.9 1.7E-06 5.9E-11 75.7 0.0 74 2-79 32-105 (389)
153 3qx1_A FAS-associated factor 1 97.8 0.0001 3.4E-09 50.8 8.0 68 2-73 9-81 (84)
154 2dzk_A UBX domain-containing p 97.7 0.00054 1.8E-08 49.6 10.8 71 2-75 15-90 (109)
155 1wgl_A TOLL-interacting protei 97.5 0.00014 4.8E-09 47.1 4.3 39 152-193 8-48 (59)
156 1otr_A Protein CUE2; protein-p 97.5 0.00019 6.6E-09 44.7 4.7 38 153-193 4-43 (49)
157 1wj4_A KIAA0794 protein; UBX d 97.4 0.00067 2.3E-08 50.2 7.6 69 2-74 45-118 (124)
158 3ihp_A Ubiquitin carboxyl-term 97.3 0.00015 5E-09 69.6 4.4 40 151-193 718-757 (854)
159 2cp9_A EF-TS, EF-TSMT, elongat 97.2 0.00064 2.2E-08 44.6 5.0 36 154-192 10-46 (64)
160 2dhy_A CUE domain-containing p 97.1 0.00073 2.5E-08 44.7 5.1 42 149-193 14-57 (67)
161 2cr5_A Reproduction 8; UBX dom 97.0 0.0023 7.9E-08 46.1 7.4 68 2-73 25-96 (109)
162 2pwq_A Ubiquitin conjugating e 96.9 0.00013 4.3E-09 59.2 0.0 39 152-193 176-214 (216)
163 1s3s_G P47 protein; AAA ATPase 96.9 0.0032 1.1E-07 46.7 7.7 65 2-68 54-121 (127)
164 2l32_A Small archaeal modifier 96.1 0.025 8.7E-07 37.8 7.1 60 1-73 1-60 (74)
165 1q02_A Sequestosome 1; helical 96.1 0.0034 1.2E-07 39.1 2.4 39 151-192 8-48 (52)
166 2di0_A Activating signal coint 96.0 0.022 7.6E-07 37.9 6.4 43 148-193 8-52 (71)
167 2daj_A KIAA0977 protein, COBL- 95.9 0.031 1.1E-06 38.5 7.0 70 2-77 12-84 (91)
168 3ihp_A Ubiquitin carboxyl-term 95.8 0.0066 2.2E-07 58.2 4.2 38 153-193 652-690 (854)
169 4e71_A Plexin-B2, MM1; transme 95.7 0.072 2.5E-06 38.5 8.6 64 10-74 23-109 (111)
170 3jyu_A Ubiquitin carboxyl-term 95.7 0.072 2.5E-06 43.1 9.6 62 13-77 154-222 (231)
171 1ryj_A Unknown; beta/alpha pro 95.7 0.085 2.9E-06 34.6 8.3 60 1-73 5-64 (70)
172 4a3p_A Ubiquitin carboxyl-term 95.5 0.048 1.6E-06 43.7 7.9 61 13-76 142-209 (217)
173 2r2o_A Plexin-B1; effector dom 95.4 0.07 2.4E-06 40.0 7.9 65 11-76 41-129 (138)
174 3ivf_A Talin-1; FERM domain, c 94.9 0.11 3.8E-06 44.5 8.9 71 2-73 5-82 (371)
175 1p3q_Q VPS9P, vacuolar protein 94.8 0.013 4.6E-07 36.9 2.0 41 151-194 10-52 (54)
176 3h6n_A Plexin-D1; structural g 94.7 0.26 8.8E-06 36.4 9.0 66 9-75 15-104 (127)
177 1vjk_A Molybdopterin convertin 94.7 0.32 1.1E-05 33.7 9.3 68 1-73 10-92 (98)
178 3rpf_C Molybdopterin convertin 94.5 0.13 4.6E-06 33.8 6.7 65 1-73 1-68 (74)
179 4dbg_B Ring finger protein 31; 94.4 0.03 1E-06 42.9 3.5 37 153-191 102-138 (162)
180 1v92_A NSFL1 cofactor P47; 3-h 94.0 0.11 3.6E-06 31.1 4.9 37 153-192 5-42 (46)
181 4e74_A Plexin-A4; RBD, structu 93.6 0.27 9.3E-06 35.8 7.1 65 11-76 27-115 (117)
182 1tte_A Ubiquitin-conjugating e 93.6 0.072 2.5E-06 42.8 4.5 28 154-184 170-197 (215)
183 1oey_A P67-PHOX, neutrophil cy 93.4 0.2 6.9E-06 34.3 5.9 46 1-51 6-51 (83)
184 2juo_A GA-binding protein alph 93.4 0.29 9.9E-06 33.5 6.5 59 15-76 7-65 (89)
185 1tr8_A Conserved protein (MTH1 93.4 0.12 4.2E-06 36.7 4.9 36 154-192 66-102 (102)
186 2dal_A Protein KIAA0794; FAS a 93.3 0.13 4.3E-06 33.2 4.5 39 152-193 14-53 (62)
187 3po0_A Small archaeal modifier 92.5 1.2 4E-05 30.0 8.9 58 11-73 18-83 (89)
188 1ufz_A Hypothetical protein BA 92.3 0.21 7.1E-06 34.1 4.5 41 153-193 34-74 (83)
189 1ixs_A Holliday junction DNA h 91.8 0.38 1.3E-05 30.9 5.3 28 150-180 14-41 (62)
190 1ef1_A Moesin; membrane, FERM 91.1 1.3 4.4E-05 36.3 9.3 75 1-78 2-81 (294)
191 1tyg_B YJBS; alpha beta barrel 91.0 0.4 1.4E-05 32.9 5.0 56 8-73 25-81 (87)
192 4dbg_B Ring finger protein 31; 90.6 0.22 7.4E-06 38.1 3.7 28 165-192 72-99 (162)
193 3dwg_C 9.5 kDa culture filtrat 90.6 1 3.4E-05 30.7 6.9 71 1-73 1-87 (93)
194 3kuz_A Plexin-C1; structural g 90.5 0.98 3.3E-05 33.2 7.0 61 11-74 39-125 (126)
195 2dzl_A Protein FAM100B; UBA-li 90.3 0.64 2.2E-05 30.2 5.3 36 155-193 19-55 (66)
196 1h4r_A Merlin; FERM, neurofibr 90.0 1.4 4.6E-05 36.6 8.5 74 1-77 23-100 (314)
197 2kmm_A Guanosine-3',5'-BIS(dip 89.9 1.1 3.7E-05 28.8 6.3 62 1-74 1-62 (73)
198 1wgk_A Riken cDNA 2900073H19 p 89.1 0.53 1.8E-05 33.9 4.6 69 1-74 12-103 (114)
199 2i1j_A Moesin; FERM, coiled-co 88.8 1.7 5.9E-05 39.6 8.8 75 1-78 5-84 (575)
200 1vd2_A Protein kinase C, IOTA 88.6 2 6.7E-05 29.6 7.0 46 3-51 7-54 (89)
201 3onh_A Ubiquitin-activating en 88.1 1.8 6.3E-05 31.7 7.0 57 14-74 9-78 (127)
202 3ivf_A Talin-1; FERM domain, c 88.1 2.5 8.7E-05 35.9 9.1 70 2-73 87-165 (371)
203 3hm6_X Plexin-B1; structural g 88.0 2.2 7.5E-05 39.3 8.8 64 12-76 275-362 (644)
204 1f0z_A THis protein; ubiquitin 88.0 0.67 2.3E-05 29.6 4.1 60 1-73 1-60 (66)
205 1vdl_A Ubiquitin carboxyl-term 87.9 1.4 4.9E-05 29.3 5.6 39 154-193 25-63 (80)
206 2k5p_A THis protein, thiamine- 87.6 0.62 2.1E-05 31.2 3.9 63 1-74 1-64 (78)
207 3e21_A HFAF1, FAS-associated f 87.5 0.88 3E-05 27.4 4.1 35 152-189 4-40 (45)
208 2dam_A ETEA protein; KIAA0887, 87.5 1.1 3.7E-05 29.1 4.9 42 151-193 16-57 (67)
209 1wgr_A Growth factor receptor- 87.2 2.5 8.5E-05 29.8 7.0 71 3-75 12-92 (100)
210 3ig3_A Plxna3 protein; plexin 86.7 3.7 0.00013 37.7 9.5 65 11-76 247-335 (627)
211 2kl0_A Putative thiamin biosyn 86.5 0.78 2.7E-05 30.3 3.8 60 1-74 1-60 (73)
212 3qij_A Protein 4.1; cytoskelet 86.5 3.2 0.00011 34.3 8.6 70 1-72 18-92 (296)
213 2l52_A Methanosarcina acetivor 86.2 3.8 0.00013 28.2 7.6 69 1-73 4-93 (99)
214 1ip9_A BEM1 protein; ubiquitin 86.1 2 6.8E-05 29.4 5.7 44 2-51 14-58 (85)
215 2qho_B E3 ubiquitin-protein li 86.0 2.2 7.6E-05 26.0 5.3 37 154-193 10-48 (53)
216 2k9x_A Tburm1, uncharacterized 85.6 0.28 9.7E-06 35.2 1.4 68 1-73 5-96 (110)
217 2kvr_A Ubiquitin carboxyl-term 85.5 1 3.4E-05 33.2 4.4 34 13-49 58-91 (130)
218 2qjl_A URM1, ubiquitin-related 84.7 7 0.00024 26.8 8.4 35 1-35 2-46 (99)
219 2q5w_D Molybdopterin convertin 84.6 2.1 7.1E-05 27.8 5.3 54 11-73 16-71 (77)
220 2cu3_A Unknown function protei 83.8 2.1 7.2E-05 27.1 4.9 56 8-74 4-59 (64)
221 3e7l_A Transcriptional regulat 81.1 2.2 7.5E-05 26.8 4.1 38 146-191 5-42 (63)
222 2ns5_A Partitioning-defective 80.8 11 0.00037 25.6 8.2 72 1-74 3-81 (85)
223 1y8x_B Ubiquitin-activating en 80.2 2.5 8.7E-05 29.5 4.5 59 12-73 6-82 (98)
224 4eut_A Serine/threonine-protei 78.2 9.7 0.00033 32.0 8.6 53 10-65 321-375 (396)
225 2lva_A Ubiquitin carboxyl-term 79.4 0.44 1.5E-05 34.8 0.0 38 155-193 20-57 (129)
226 1fm0_D Molybdopterin convertin 74.1 15 0.00051 23.7 7.3 57 11-73 17-75 (81)
227 2kmc_A Fermitin family homolog 72.7 22 0.00074 24.9 9.0 72 2-74 21-98 (102)
228 2g1e_A Hypothetical protein TA 72.0 16 0.00056 23.9 6.9 58 15-73 19-84 (90)
229 1rws_A Hypothetical protein PF 71.2 1.7 5.8E-05 28.6 1.6 48 14-73 24-71 (77)
230 2inc_C TOUB protein; DIIRON, 4 70.8 21 0.00073 24.1 7.7 61 13-74 15-81 (83)
231 3qa8_A MGC80376 protein; kinas 70.7 5.7 0.0002 36.9 5.5 51 9-62 320-371 (676)
232 3hvz_A Uncharacterized protein 67.2 24 0.00082 23.2 7.2 62 2-75 7-68 (78)
233 1cuk_A RUVA protein; DNA repai 66.9 8.9 0.00031 30.1 5.2 25 153-180 160-184 (203)
234 2zjd_A Microtubule-associated 66.4 23 0.00079 25.9 7.0 58 15-75 57-119 (130)
235 1umq_A Photosynthetic apparatu 66.1 3.4 0.00012 27.8 2.2 24 168-191 41-64 (81)
236 3ge3_C Toluene-4-monooxygenase 66.0 27 0.00092 23.6 6.6 61 14-74 18-82 (84)
237 1wgy_A RAP guanine nucleotide 65.6 32 0.0011 24.1 10.4 70 4-76 13-87 (104)
238 1q1o_A Cell division control p 64.8 8.7 0.0003 26.8 4.2 26 10-35 22-47 (98)
239 2ztd_A Holliday junction ATP-d 64.3 12 0.00041 29.7 5.5 25 153-180 164-188 (212)
240 2eel_A Cell death activator CI 63.7 25 0.00084 24.2 6.3 50 21-76 28-79 (91)
241 2kna_A Baculoviral IAP repeat- 63.6 5.8 0.0002 27.9 3.1 35 155-192 29-70 (104)
242 4g3o_A E3 ubiquitin-protein li 63.4 17 0.00059 22.8 5.0 39 151-193 15-55 (58)
243 1g2h_A Transcriptional regulat 62.9 3.9 0.00013 25.5 2.0 23 168-191 21-43 (61)
244 2ylm_A Ubiquitin carboxyl-term 62.2 6.9 0.00023 35.2 4.2 32 14-48 39-70 (530)
245 3u52_E Phenol hydroxylase comp 61.3 34 0.0012 24.6 6.9 61 13-73 40-107 (119)
246 2dhz_A RAP guanine nucleotide 61.2 25 0.00087 25.4 6.3 68 5-75 14-92 (120)
247 3au4_A Myosin-X; protein-prote 60.3 17 0.00058 32.5 6.4 58 1-61 217-280 (555)
248 3w1s_C Ubiquitin-like protein 60.2 38 0.0013 23.1 6.9 57 14-75 26-85 (91)
249 4gdk_A Ubiquitin-like protein 59.4 20 0.0007 24.4 5.3 59 14-75 23-85 (91)
250 3m95_A Autophagy related prote 56.8 45 0.0015 24.1 7.0 59 15-76 57-119 (125)
251 1f2r_I Inhibitor of caspase-ac 56.8 22 0.00076 24.8 5.1 50 21-76 37-90 (100)
252 4fp9_B Mterf domain-containing 56.0 9.1 0.00031 32.4 3.7 29 151-182 44-72 (335)
253 3h9d_A ATG8, microtubule-assoc 56.0 34 0.0011 24.5 6.2 58 15-75 52-113 (119)
254 2c7h_A RBBP6, retinoblastoma-b 55.7 25 0.00085 23.9 5.1 33 3-35 9-43 (86)
255 3pvl_A Myosin VIIA isoform 1; 55.5 28 0.00096 32.1 7.1 46 1-48 264-309 (655)
256 3r8s_T 50S ribosomal protein L 55.2 31 0.0011 23.6 5.7 41 10-53 27-68 (93)
257 2r2q_A Gamma-aminobutyric acid 54.0 24 0.00083 24.8 5.1 57 15-74 48-108 (110)
258 1oai_A Nuclear RNA export fact 53.8 22 0.00076 22.2 4.4 36 152-190 6-42 (59)
259 4gmv_A RAS-associated and plec 53.8 44 0.0015 27.5 7.4 69 3-73 34-112 (281)
260 3rui_B Autophagy-related prote 53.7 49 0.0017 23.6 6.8 59 15-76 51-113 (118)
261 1eo6_A GATE-16, golgi-associat 53.5 25 0.00085 25.1 5.2 58 16-76 50-111 (117)
262 2hj1_A Hypothetical protein; s 53.4 18 0.00062 25.0 4.3 58 11-73 26-83 (97)
263 4a6q_A Histone deacetylase com 53.0 50 0.0017 24.5 6.8 64 12-77 55-140 (143)
264 1ntc_A Protein (nitrogen regul 52.5 5.6 0.00019 26.8 1.4 24 168-191 51-74 (91)
265 1eto_A FIS, factor for inversi 51.7 8.2 0.00028 26.7 2.2 24 168-191 58-81 (98)
266 2ejs_A Autocrine motility fact 48.2 48 0.0016 20.7 5.2 39 151-193 11-51 (58)
267 3hk0_A Growth factor receptor- 47.9 33 0.0011 27.8 5.6 68 3-73 11-87 (256)
268 1v8c_A MOAD related protein; r 46.2 72 0.0025 24.0 7.1 56 14-73 17-81 (168)
269 3tve_T 50S ribosomal protein L 45.8 42 0.0015 22.9 5.1 40 10-52 21-61 (92)
270 1g2y_A Hepatocyte nuclear fact 45.8 31 0.0011 18.9 3.4 22 153-177 9-30 (32)
271 1n62_A Carbon monoxide dehydro 45.0 18 0.00061 27.5 3.4 27 2-29 5-31 (166)
272 3hrd_D Nicotinate dehydrogenas 44.4 18 0.00061 27.4 3.3 27 1-28 4-30 (160)
273 3lxf_A Ferredoxin; iron, iron- 44.3 28 0.00096 23.9 4.1 27 2-28 2-28 (104)
274 1ixr_A Holliday junction DNA h 42.7 5.2 0.00018 31.2 0.0 24 154-180 147-170 (191)
275 1pqs_A Cell division control p 42.2 23 0.00077 23.5 3.1 36 12-50 3-43 (77)
276 3kvh_A Protein syndesmos; NUDT 42.2 32 0.0011 27.3 4.5 44 148-193 161-204 (214)
277 1t3q_A Quinoline 2-oxidoreduct 42.0 20 0.0007 27.0 3.3 28 1-29 10-37 (168)
278 3fe3_A MAP/microtubule affinit 41.8 34 0.0012 27.8 5.0 37 153-192 289-325 (328)
279 2ylm_A Ubiquitin carboxyl-term 41.7 21 0.00071 32.1 3.8 70 3-75 133-217 (530)
280 2hjj_A Hypothetical protein YK 41.4 15 0.00052 24.8 2.2 20 164-184 8-27 (87)
281 1ffv_A CUTS, iron-sulfur prote 40.6 23 0.00078 26.8 3.4 27 2-29 5-31 (163)
282 2jp7_A MRNA export factor MEX6 39.7 43 0.0015 20.7 4.0 35 153-190 6-41 (57)
283 2cu1_A Mitogen-activated prote 38.8 73 0.0025 22.2 5.4 43 3-51 9-52 (103)
284 2lgx_A Fermitin family homolog 38.8 17 0.00058 25.9 2.2 62 11-73 36-100 (112)
285 2nvu_B Maltose binding protein 38.7 46 0.0016 31.0 5.8 60 13-73 714-789 (805)
286 2zjr_Q 50S ribosomal protein L 38.6 39 0.0013 23.2 4.0 38 12-52 24-62 (95)
287 3k6g_A Telomeric repeat-bindin 38.6 39 0.0013 23.7 4.0 37 155-194 15-52 (111)
288 3chb_D Cholera toxin; toxin/re 38.4 44 0.0015 22.6 4.1 31 3-33 39-69 (104)
289 1wz3_A Autophagy 12B, ATG12B, 38.2 48 0.0016 22.7 4.5 56 14-75 31-90 (96)
290 2ekf_A Ancient ubiquitous prot 37.9 75 0.0026 20.0 6.5 39 151-193 11-51 (61)
291 3tca_A Amyloid beta A4 precurs 36.4 78 0.0027 25.0 6.2 33 3-35 37-69 (291)
292 2v1y_A Phosphatidylinositol-4, 34.9 61 0.0021 22.8 4.6 70 3-75 22-104 (108)
293 3t6p_A Baculoviral IAP repeat- 33.9 27 0.00093 29.6 3.1 36 155-193 121-163 (345)
294 2kfs_A Conserved hypothetical 33.0 26 0.0009 26.2 2.6 25 171-195 84-108 (148)
295 1rm6_C 4-hydroxybenzoyl-COA re 32.2 31 0.001 25.9 2.9 27 3-30 5-31 (161)
296 2jx5_A GLUB(S27A); ubiquitin, 32.2 92 0.0032 19.3 7.0 52 1-60 1-52 (69)
297 2bt6_A Adrenodoxin 1; rutheniu 30.1 49 0.0017 22.5 3.5 26 2-27 8-33 (108)
298 1vq8_S 50S ribosomal protein L 30.0 92 0.0032 20.8 4.7 34 10-46 22-55 (85)
299 2wlb_A ETP1-FD, electron trans 29.2 67 0.0023 21.5 4.0 27 2-28 5-31 (103)
300 1ltr_D ETB-R2, heat-labIle ent 28.8 53 0.0018 22.5 3.3 31 3-33 38-68 (113)
301 1ibx_B Chimera of IGG binding 28.2 32 0.0011 25.6 2.3 49 21-75 82-134 (145)
302 1uwm_A Ferredoxin VI, FDVI; el 27.2 85 0.0029 21.1 4.3 28 1-28 1-28 (106)
303 2nnz_A Hypothetical protein; b 27.0 26 0.00089 26.2 1.6 28 1-29 30-60 (153)
304 3j21_T 50S ribosomal protein L 26.8 1.2E+02 0.004 20.4 4.8 35 10-47 23-57 (86)
305 2y5c_A Adrenodoxin-like protei 26.0 63 0.0022 22.0 3.5 26 2-27 7-32 (109)
306 2jrh_A Mitogen-activated prote 25.7 1.6E+02 0.0055 20.0 5.5 44 3-52 5-49 (94)
307 1xlq_A Putidaredoxin, PDX; [2F 25.6 89 0.003 21.0 4.2 27 2-28 2-28 (106)
308 4eku_A Protein-tyrosine kinase 25.3 85 0.0029 26.9 4.8 60 3-62 24-97 (392)
309 3mva_O Transcription terminati 25.0 33 0.0011 28.5 2.1 38 153-193 19-60 (343)
310 2ysk_A Hypothetical protein TT 24.8 66 0.0023 23.5 3.5 27 152-181 15-43 (145)
311 3ff5_A PEX14P, peroxisomal bio 24.8 98 0.0034 19.0 3.7 28 150-180 27-54 (54)
312 2w84_A Peroxisomal membrane pr 24.6 1.2E+02 0.0041 19.6 4.3 32 149-183 31-62 (70)
313 4dxa_B KREV interaction trappe 24.3 71 0.0024 26.2 4.0 27 1-27 6-34 (322)
314 2i1s_A Hypothetical protein; m 24.0 1.3E+02 0.0043 22.8 5.2 25 11-35 21-46 (188)
315 1ojl_A Transcriptional regulat 23.8 34 0.0012 27.9 1.9 24 168-191 268-291 (304)
316 1b44_D ETB-POL, protein (B-POL 22.6 64 0.0022 22.6 2.8 31 3-33 38-68 (129)
317 2llw_A Heat shock protein STI1 22.6 43 0.0015 21.7 1.9 45 150-194 6-52 (71)
318 3mva_O Transcription terminati 22.3 56 0.0019 27.1 3.0 38 153-193 236-284 (343)
319 3q8g_A CRAL-TRIO domain-contai 21.8 1.1E+02 0.0038 25.1 4.8 25 168-192 59-83 (320)
320 2c60_A Human mitogen-activated 21.3 2.2E+02 0.0074 19.9 5.4 43 3-51 32-75 (111)
321 2kkc_A Sequestosome-1; P62, PB 21.2 1.8E+02 0.0061 20.1 5.0 28 21-50 42-69 (102)
322 1awd_A Ferredoxin; electron tr 21.1 1.1E+02 0.0038 20.0 3.8 28 1-29 1-28 (94)
323 1frr_A Ferredoxin I; electron 20.9 1.2E+02 0.004 19.8 3.9 26 2-28 3-28 (95)
324 3hui_A Ferredoxin; cytochrome 20.6 1E+02 0.0035 21.9 3.8 26 2-27 23-48 (126)
325 3eud_A Protein SHQ1; CS domain 20.5 96 0.0033 22.1 3.5 37 39-76 58-94 (115)
326 2zc2_A DNAD-like replication p 20.3 20 0.0007 23.1 -0.1 29 150-182 20-49 (78)
No 1
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=100.00 E-value=1.9e-38 Score=277.78 Aligned_cols=187 Identities=32% Similarity=0.568 Sum_probs=126.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHH---hCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccc
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDV---QGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~---~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~ 77 (197)
|+|+||+++|++|.|+|++++||.+||++|+.. .| +++++|||||+||+|+|+++|++|+|+++++|++|+.+.
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~g---ip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~ 84 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDA---FPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 84 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSS---CCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECC
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCC---CChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecC
Confidence 899999999999999999999999999999994 56 999999999999999999999999999999996666665
Q ss_pred CCCCC-CCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCcc---ccccCCCCCCccccccccccC
Q 029207 78 KTLGS-AGASSAQPAHTTP--PTTAPSSNSTPPQEASVP--PPAPTPSIPASNVTS---NVTAANANSDTYGQAASNLVA 149 (197)
Q Consensus 78 ~~~~~-~~~~~~~~~~~~~--p~~~~~~~~~p~~~p~~~--~~~~~p~~~~~~~~~---~~~~~~~~~~~~~~~~s~l~~ 149 (197)
+..+. +.+..+.+.+.+. +..+..+...+...+... +....++++++..+. ...+.......++.+.|.|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~s~l~~ 164 (368)
T 1oqy_A 85 KAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVT 164 (368)
T ss_dssp CSSSCCCCCSSCCCCCSSSCCCSCCCSSSCCCCCCCSSSSCCCCCSCSCCCCSSTTCSCCCSCSCCCSCCCCCCCTTTCC
T ss_pred CCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCccccccCCccccCCCCCCCCcccccccccccccccccccccccC
Confidence 54332 2111111111100 000000000000000000 000000011100000 001111112334567899999
Q ss_pred CCchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 150 g~~~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
|+++++.|++|++|| |+|++|++|||++|||+|||||||++
T Consensus 165 g~~~~~~i~~l~~MG---f~~~~~~~AL~a~~nn~~~A~e~L~~ 205 (368)
T 1oqy_A 165 GSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLT 205 (368)
T ss_dssp TTTHHHHHHHHHTTT---CCSHHHHHHHHHSCSSTTHHHHTTTT
T ss_pred CcchHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 999999999999999 99999999999999999999999998
No 2
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=7.6e-22 Score=144.47 Aligned_cols=77 Identities=27% Similarity=0.433 Sum_probs=70.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccCCC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~~~ 80 (197)
|+|+||+++|+.|.|+|++++||.+||++|+...| +++++|||+|+||+|+|+.+|++|||++|++|+|++++++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~~ 78 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSIS---CEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST 78 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTT---SCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC----
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999876644
No 3
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.84 E-value=2.6e-20 Score=133.52 Aligned_cols=78 Identities=41% Similarity=0.707 Sum_probs=73.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHH---hCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccc
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDV---QGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~---~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~ 77 (197)
|+|+||+++|+.|.++|++++||.+||++|+.. .| +|+++|||+|+||.|+|+.+|++|||+++++|+|+++++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDA---FPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTT---CCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCC---CChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 899999999999999999999999999999999 67 999999999999999999999999999999999999876
Q ss_pred CCCC
Q 029207 78 KTLG 81 (197)
Q Consensus 78 ~~~~ 81 (197)
+..+
T Consensus 78 ~~~~ 81 (95)
T 1uel_A 78 KAVS 81 (95)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5443
No 4
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.84 E-value=1.1e-20 Score=133.71 Aligned_cols=76 Identities=24% Similarity=0.312 Sum_probs=71.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccCCC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~~~ 80 (197)
|+|+||+++|+.|.|+|++++||.+||++|++..| +++++|||+|+||.|+|+.+|++|+| ++++|||+++.+..+
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~~ 81 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS---IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQT 81 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC--
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCCC
Confidence 78999999999999999999999999999999999 99999999999999999999999999 899999998865433
No 5
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=129.24 Aligned_cols=74 Identities=20% Similarity=0.275 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccc
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~ 77 (197)
|+|+||+.+|+.+.++|++++||.+||++|+...| +|+++|||+|+|+.|+|+.+|++|||+++++|+++++.+
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~ 78 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCB
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcC---CCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999999864
No 6
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.84 E-value=1.8e-20 Score=132.51 Aligned_cols=79 Identities=38% Similarity=0.537 Sum_probs=72.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccCCC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~~~ 80 (197)
|+|+||+++|+.|.|+|++++||.+||++|++..| +|+++|||+|+|+.|+|+.+|++|+|+++++|+|+++.+...
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999987755
Q ss_pred CC
Q 029207 81 GS 82 (197)
Q Consensus 81 ~~ 82 (197)
..
T Consensus 78 ~~ 79 (88)
T 4fbj_B 78 GL 79 (88)
T ss_dssp --
T ss_pred CC
Confidence 43
No 7
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.83 E-value=2.6e-20 Score=132.74 Aligned_cols=70 Identities=24% Similarity=0.316 Sum_probs=68.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~ 73 (197)
|+|+||++.|+++.++|++++||++||++|+++.| +|+++|||+|+|++|+|+.+|++|+|++|++|+|.
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~G---ip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIG---TQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhC---CCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 68999999999999999999999999999999999 99999999999999999999999999999999986
No 8
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.82 E-value=4.7e-20 Score=128.74 Aligned_cols=75 Identities=39% Similarity=0.705 Sum_probs=69.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHH---hCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccc
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDV---QGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~---~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~ 77 (197)
|+|+||+.+|+.+.++|++++||.+||++|+.. .| +++++|||+|+|+.|+|+.+|++|||+++++|+|+++++
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDA---FPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTT---CCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccC---CCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 789999999999999999999999999999998 67 999999999999999999999999999999999998776
Q ss_pred C
Q 029207 78 K 78 (197)
Q Consensus 78 ~ 78 (197)
+
T Consensus 83 ~ 83 (85)
T 2wyq_A 83 K 83 (85)
T ss_dssp -
T ss_pred C
Confidence 5
No 9
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.82 E-value=4.2e-20 Score=131.17 Aligned_cols=74 Identities=41% Similarity=0.623 Sum_probs=71.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccc
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~ 77 (197)
|+|+||+++|+.|.|+|++++||.+||++|++..| +++++|||+|+|+.|+|+.+|++|||++|++|+|+++.+
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC---CChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999998754
No 10
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.82 E-value=2.5e-20 Score=134.69 Aligned_cols=74 Identities=30% Similarity=0.522 Sum_probs=69.0
Q ss_pred CEEEEEeCCCcEEEE--EeCCCCCHHHHHHHH-HHHhCCCCCCCCCeEEEeCCeecCCCCccccccc-CCCCeEEEEecc
Q 029207 1 MKLTVKTLKGSHFEI--RVQPSDTVMAVKKNI-EDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKV-SEDGFLVVMLSK 76 (197)
Q Consensus 1 M~I~Vk~~~g~~~~i--ev~~~~TV~~LK~~I-~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I-~~~~~I~l~~~~ 76 (197)
|+|+||+++|+.|.+ +|++++||.+||++| +...| +|+++|||||+||+|+|+.+|++|+| ++|++|+||+++
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA---SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSC---SCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcC---CChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 789999999998877 566999999999999 88778 99999999999999999999999999 999999999987
Q ss_pred c
Q 029207 77 S 77 (197)
Q Consensus 77 ~ 77 (197)
+
T Consensus 97 p 97 (98)
T 4a20_A 97 N 97 (98)
T ss_dssp C
T ss_pred C
Confidence 4
No 11
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.82 E-value=3.7e-20 Score=130.11 Aligned_cols=72 Identities=35% Similarity=0.531 Sum_probs=70.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCee-cCCCCcccccccCCCCeEEEEec
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKV-LKDETTLADNKVSEDGFLVVMLS 75 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~-L~D~~tL~~~~I~~~~~I~l~~~ 75 (197)
|+|+||+++|+.+.++|++++||.+||++|++..| +|+++|||+|+|+. |+|+++|++|||+++++|+|+++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQH---IPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 89999999999999999999999999999999999 99999999999999 99999999999999999999875
No 12
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.81 E-value=1.2e-19 Score=129.68 Aligned_cols=77 Identities=39% Similarity=0.558 Sum_probs=73.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccCCC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~~~ 80 (197)
|+|+||+++|+.|.|+|++++||.+||++|++..| +++++|||+|+|+.|+|+.+|++|+|+++++|+|+++.+...
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC---CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999876644
No 13
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.5e-20 Score=131.91 Aligned_cols=73 Identities=30% Similarity=0.522 Sum_probs=68.7
Q ss_pred CEEEEEeCCCcEEEEEeC--CCCCHHHHHHHH-HHHhCCCCCCCCCeEEEeCCeecCCCCccccccc-CCCCeEEEEecc
Q 029207 1 MKLTVKTLKGSHFEIRVQ--PSDTVMAVKKNI-EDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKV-SEDGFLVVMLSK 76 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~--~~~TV~~LK~~I-~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I-~~~~~I~l~~~~ 76 (197)
|+|+||+++|++|.|+|+ +++||.+||++| +...| +|+++|||||+||+|+|+.+|++|+| .++++|+|++++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA---SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSC---SSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcC---CChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999999988755 999999999999 99889 99999999999999999999999999 699999999865
No 14
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.5e-19 Score=130.19 Aligned_cols=75 Identities=39% Similarity=0.552 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~ 78 (197)
|+|+||+++|+.|.|+|++++||.+||++|++..| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~G 97 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 97 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhC---CChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998653
No 15
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.81 E-value=1.9e-19 Score=131.39 Aligned_cols=76 Identities=28% Similarity=0.325 Sum_probs=71.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccCCC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~~~ 80 (197)
|+|+||..+|+ |.|+|++++||.+||++|+...| +++++|||+|+||.|+|+++|++|+|+++++|+|+++.+..+
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~ 93 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK---AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 93 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHT---CCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCS
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCC
Confidence 78999998886 79999999999999999999999 999999999999999999999999999999999998776544
No 16
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.81 E-value=2.7e-19 Score=121.75 Aligned_cols=74 Identities=39% Similarity=0.583 Sum_probs=71.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccc
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~ 77 (197)
|+|+||+.+|+.+.++|++++||.+||.+|++..| +|+++|||+|+|+.|+|+.+|++|||+++++|+++++.+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 74 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALR 74 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999998764
No 17
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.80 E-value=1.3e-19 Score=127.17 Aligned_cols=75 Identities=39% Similarity=0.564 Sum_probs=72.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~ 78 (197)
|+|+||+++|+.|.|+|++++||.+||.+|++..| +|+++|||+|+|+.|+|+.+|++|+|+++++|+|+++.+.
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~G 87 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRG 87 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999987653
No 18
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.80 E-value=6e-20 Score=132.90 Aligned_cols=71 Identities=18% Similarity=0.270 Sum_probs=68.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEe
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~ 74 (197)
|+|+||++.|+++.|+|++++||.+||++|+++.| +|+++|||+|+||+|+|+.+|++|+|+++++|+|..
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~G---ip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTG---TRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHC---CCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999863
No 19
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=2e-19 Score=123.72 Aligned_cols=73 Identities=22% Similarity=0.350 Sum_probs=70.0
Q ss_pred CEEEEEeCCCcEE-EEE-eCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecc
Q 029207 1 MKLTVKTLKGSHF-EIR-VQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (197)
Q Consensus 1 M~I~Vk~~~g~~~-~ie-v~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~ 76 (197)
|+|+||+.+|+.+ .++ |++++||.+||++|+...| +|+++|||+|+|+.|+|+.+|++|||+++++|+|+++.
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~g---ip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFH---VEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 8999999999885 999 9999999999999999999 99999999999999999999999999999999999875
No 20
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.80 E-value=4.8e-19 Score=120.47 Aligned_cols=74 Identities=41% Similarity=0.596 Sum_probs=71.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccc
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~ 77 (197)
|+|+||+.+|+.+.++|++++||.+||++|++..| +++++|+|+|+|+.|+|+.+|++|||+++++|+++++.+
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 74 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLR 74 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999998764
No 21
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=1.7e-19 Score=131.87 Aligned_cols=77 Identities=22% Similarity=0.402 Sum_probs=73.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccCCC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~~~ 80 (197)
|+|+||+++|+.+.|+|++++||.+||.+|+...| +++++|||+|+|+.|+|+++|++|||+++++|+|+++++...
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~~ 100 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEG---VEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQN 100 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTC---CCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHC---cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999998776543
No 22
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=126.34 Aligned_cols=71 Identities=25% Similarity=0.343 Sum_probs=68.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEec
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLS 75 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~ 75 (197)
|+|+||+++|+.+.++|++++||.+||++|++..| +|+++|||+|+||.|+|+.+|++||| +|++||+++|
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS---IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 78999999999999999999999999999999999 99999999999999999999999999 8999999875
No 23
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=2.6e-19 Score=124.73 Aligned_cols=76 Identities=39% Similarity=0.566 Sum_probs=72.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccCC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~~ 79 (197)
|+|+||+++|+.+.++|++++||.+||++|++..+ +|+++|||+|+|+.|+|+.+|++|+|+++++|+|+++.+..
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987653
No 24
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.2e-19 Score=123.19 Aligned_cols=73 Identities=29% Similarity=0.458 Sum_probs=70.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecc
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~ 76 (197)
|+|+||+.+|+.+.++|++++||.+||++|++..| +++++|||+|+||.|+|+.+|++|||++|++|+|+++.
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLN---VPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTC---CCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999865
No 25
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=4.6e-19 Score=123.31 Aligned_cols=76 Identities=39% Similarity=0.554 Sum_probs=72.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccCC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~~ 79 (197)
|+|+||+.+|+.+.++|++++||.+||++|++..+ +|+++|||+|+|+.|+|+.+|++|+|+++++|+|+++.+..
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 79999999999999999999999999999999999 99999999999999999999999999999999999987653
No 26
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=6.2e-19 Score=124.24 Aligned_cols=77 Identities=21% Similarity=0.258 Sum_probs=72.4
Q ss_pred CEEEEEeCCC-cEEEE-EeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccC
Q 029207 1 MKLTVKTLKG-SHFEI-RVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (197)
Q Consensus 1 M~I~Vk~~~g-~~~~i-ev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~ 78 (197)
|+|+||+++| +.+.| +|++++||.+||++|+...| +|+++|||+|+|+.|+|+.+|++|+|+++++|+|+++.+.
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~g 84 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFD---VRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDS 84 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSC---CCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHC---cChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCC
Confidence 7899999999 79999 59999999999999999999 9999999999999999999999999999999999998765
Q ss_pred CC
Q 029207 79 TL 80 (197)
Q Consensus 79 ~~ 80 (197)
..
T Consensus 85 G~ 86 (89)
T 1wy8_A 85 GP 86 (89)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 27
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.79 E-value=2.7e-19 Score=123.41 Aligned_cols=74 Identities=19% Similarity=0.301 Sum_probs=71.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccc
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~ 77 (197)
|+|+||+.+|+.+.++|++++||.+||++|+++.| +|+++|||+|+|+.|+|+++|++|+|+++++|+++++.+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~g---i~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~ 77 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT 77 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC---CCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEecc
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999998765
No 28
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=6e-19 Score=124.64 Aligned_cols=75 Identities=37% Similarity=0.596 Sum_probs=69.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~ 78 (197)
|+|+|++++|+.+.++|++++||.+||++|++..| +|+++|||+|+|+.|+|+.+|++|+|+++++|+|+++.+.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~G 84 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 84 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC----
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999987654
No 29
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=4.3e-19 Score=126.50 Aligned_cols=77 Identities=23% Similarity=0.196 Sum_probs=71.0
Q ss_pred CEEEEEeCCCc--EEEEEeCCCCCHHHHHHHHHHHh--CCCCCCCCCeEEEeCCeecCCCCccccc--ccCCCCeEEEEe
Q 029207 1 MKLTVKTLKGS--HFEIRVQPSDTVMAVKKNIEDVQ--GKDNYPCGQQLLIHNGKVLKDETTLADN--KVSEDGFLVVML 74 (197)
Q Consensus 1 M~I~Vk~~~g~--~~~iev~~~~TV~~LK~~I~~~~--g~~~~p~~~qrLi~~Gk~L~D~~tL~~~--~I~~~~~I~l~~ 74 (197)
|+|+||+.+|+ .+.|+|++++||.+||++|++.. + +++++|||||+||+|+|+++|++| +|+++++|||++
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~---i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPER---PRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTC---CCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCC---CChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 78999999998 67778889999999999999998 8 999999999999999999999999 999999999998
Q ss_pred cccCCC
Q 029207 75 SKSKTL 80 (197)
Q Consensus 75 ~~~~~~ 80 (197)
+.+...
T Consensus 85 ~~~gg~ 90 (93)
T 1wgd_A 85 NVKSGP 90 (93)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 30
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.79 E-value=2.6e-19 Score=126.43 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=70.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~ 78 (197)
|+|+||+++|+.+.++|++++||.+||.+|+...| +|+++|||+|+|+.|+|+++|++|||+++++|+|+++.+.
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~g 79 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTC---SCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC---
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhC---CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999987654
No 31
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=7e-19 Score=123.38 Aligned_cols=75 Identities=28% Similarity=0.446 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~ 78 (197)
|+|+||+.+|+.+.++|++++||.+||++|++..| +|+++|||+|+|+.|+|+++|++|+|+++++|+|+++.+.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~G 82 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQG---LPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGS 82 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTC---CCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhC---CChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998764
No 32
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.78 E-value=8.8e-19 Score=125.50 Aligned_cols=75 Identities=27% Similarity=0.367 Sum_probs=71.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CcccccccCCCCeEEEEecccCC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDE-TTLADNKVSEDGFLVVMLSKSKT 79 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~-~tL~~~~I~~~~~I~l~~~~~~~ 79 (197)
|+|+||+.+| .+.|+|++++||.+||++|+...| +|+++|||+|+||.|+|+ ++|++|||+++++|+|+++.+..
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVEN---TPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSS---SCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 6899999888 899999999999999999999999 999999999999999999 99999999999999999987654
No 33
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.78 E-value=5.5e-19 Score=127.13 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=72.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~ 78 (197)
|+|+||+++|+.+.|+|.+++||.+||++|+.+.| +++++|||+|+|+.|+|+++|++|+|+++++|+|+++.+.
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~g---ip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999987653
No 34
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.78 E-value=9.6e-19 Score=126.95 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=70.1
Q ss_pred CEEEEEeCCC----cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CcccccccCCCCeEEEEec
Q 029207 1 MKLTVKTLKG----SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDE-TTLADNKVSEDGFLVVMLS 75 (197)
Q Consensus 1 M~I~Vk~~~g----~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~-~tL~~~~I~~~~~I~l~~~ 75 (197)
|+|+|++.++ +.|.|+|++++||.+||++|+...| +++++|||+|+||.|+|+ ++|++|+|+++++|+|+.+
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESG---VPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTC---CCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHC---cChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 7899998754 7999999999999999999999999 999999999999999887 6999999999999999987
Q ss_pred ccCCC
Q 029207 76 KSKTL 80 (197)
Q Consensus 76 ~~~~~ 80 (197)
.+..+
T Consensus 85 ~~gg~ 89 (102)
T 1v5o_A 85 DNVGL 89 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 65543
No 35
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.78 E-value=1.3e-18 Score=118.93 Aligned_cols=71 Identities=28% Similarity=0.529 Sum_probs=68.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEec
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLS 75 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~ 75 (197)
|+|+||+ +|+.+.++|++++||.+||++|+...| +|+++|||+|+|+.|+|+.+|++|||++|++|+|+.+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhC---CCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 6899998 999999999999999999999999999 9999999999999999999999999999999999864
No 36
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.78 E-value=1e-18 Score=124.87 Aligned_cols=74 Identities=22% Similarity=0.232 Sum_probs=68.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CcccccccCCCCeEEEEecccCC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDE-TTLADNKVSEDGFLVVMLSKSKT 79 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~-~tL~~~~I~~~~~I~l~~~~~~~ 79 (197)
|+|+||+++|+.|.++|++++||.+||++|+.. . +++|||+|+||.|+|+ ++|++|+|+++++|||+++++..
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~-----~-~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~ 81 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPG-----Q-ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA 81 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSS-----T-TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhh-----C-cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCC
Confidence 789999999999999999999999999999876 3 7999999999999999 99999999999999999887654
Q ss_pred C
Q 029207 80 L 80 (197)
Q Consensus 80 ~ 80 (197)
+
T Consensus 82 ~ 82 (95)
T 1wia_A 82 A 82 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 37
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.78 E-value=3.1e-19 Score=130.44 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=70.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---------------CCeEEEeCCeecC-CCCccccccc
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC---------------GQQLLIHNGKVLK-DETTLADNKV 64 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~---------------~~qrLi~~Gk~L~-D~~tL~~~~I 64 (197)
|+|+||+++|++|.|+|++++||.+||++|++..+ +++ ++|+|||+||+|. |+++|++|||
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~---i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQ---LKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHH---HHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 89999999999999999999999999999999998 766 4679999999996 6699999999
Q ss_pred CCCCeEEEEecccCC
Q 029207 65 SEDGFLVVMLSKSKT 79 (197)
Q Consensus 65 ~~~~~I~l~~~~~~~ 79 (197)
+++++|||+.+.+..
T Consensus 85 ~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 85 RNRDEVSFIKKLGQK 99 (105)
T ss_dssp CSSEEEEEEECSCSC
T ss_pred CCCCEEEEEehhccC
Confidence 999999999987665
No 38
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.77 E-value=1.9e-18 Score=124.15 Aligned_cols=76 Identities=39% Similarity=0.574 Sum_probs=72.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccCC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~~ 79 (197)
|+|+||+.+|+.+.++|++++||.+||.+|+...| +++++|||+|+|+.|+|+.+|++|||+++++|+|+++.+..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g---i~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG 76 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999887643
No 39
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=9.2e-19 Score=126.68 Aligned_cols=72 Identities=17% Similarity=0.094 Sum_probs=65.2
Q ss_pred EEEEEeCC----CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecc
Q 029207 2 KLTVKTLK----GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (197)
Q Consensus 2 ~I~Vk~~~----g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~ 76 (197)
.|.|+..+ ++.|.|+|++++||.+||++|+++.| +|+++|||||+||+|+|+++|++|+|+++++|+||+.+
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~g---ip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~lr 92 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFG---LQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELK 92 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTT---CCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHC---cCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEEEC
Confidence 36677666 77899999999999999999999999 99999999999999999999999999999999665443
No 40
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.77 E-value=1.5e-18 Score=127.79 Aligned_cols=75 Identities=40% Similarity=0.586 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~ 78 (197)
|+|+||+++|+.|.|+|++++||.+||.+|+...| +|+++|||+|+||.|+|+.+|++|+|+++++|+|+++.+.
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC---CChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998653
No 41
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=125.11 Aligned_cols=74 Identities=28% Similarity=0.358 Sum_probs=70.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~ 78 (197)
|+|+||.. |+.+.|+|++++||.+||++|+...| +++++|||+|+||.|+|+.+|++|||+++++|+|+++.+.
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFK---SHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHT---CCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 78999988 88999999999999999999999999 9999999999999999999999999999999999987654
No 42
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.5e-18 Score=125.67 Aligned_cols=76 Identities=28% Similarity=0.325 Sum_probs=70.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccCCC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~~~ 80 (197)
|+|+||+.+|+ +.|+|++++||.+||++|++..| +|+++|||+|+||.|+|+++|++|||+++++|+|+++.+..+
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~p 98 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK---AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 98 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCSC
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCCC
Confidence 78999999886 79999999999999999999999 999999999999999999999999999999999998875543
No 43
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.76 E-value=4.7e-18 Score=126.22 Aligned_cols=76 Identities=18% Similarity=0.253 Sum_probs=65.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHH------hCCCCCCCCCeEEEeCCeecCCCCcccccccCCCC--eEEE
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDV------QGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDG--FLVV 72 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~------~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~--~I~l 72 (197)
|+|+||+++|+++.|+|++++||.+||++|++. .+.. +++++|||||.||+|+|+++|++|+|+.++ +|||
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p-~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhL 95 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQV-SSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHL 95 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCC-CCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCC-CChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEE
Confidence 789999999999999999999999999999994 3411 369999999999999999999999998775 4666
Q ss_pred Eeccc
Q 029207 73 MLSKS 77 (197)
Q Consensus 73 ~~~~~ 77 (197)
+++..
T Consensus 96 vlr~~ 100 (116)
T 1wgh_A 96 VARET 100 (116)
T ss_dssp EECSS
T ss_pred EccCC
Confidence 65543
No 44
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.76 E-value=7.9e-19 Score=125.64 Aligned_cols=75 Identities=21% Similarity=0.330 Sum_probs=71.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccCC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~~ 79 (197)
|+|+||+. |+.+.|+|++++||.+||++|+...| +++++|||+|+|+.|+|+++|++|+|+++++|+|+++.+..
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLH---CNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTC---SCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 78999988 99999999999999999999999999 99999999999999999999999999999999999877654
No 45
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2.6e-18 Score=129.27 Aligned_cols=76 Identities=26% Similarity=0.330 Sum_probs=69.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccCCC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~~~ 80 (197)
|+|+||+. |+.|.|+|++++||.+||++|+...| +++++|||+|+||+|+|+++|++|+|+++++|+|+++.+...
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFK---SQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHC---SCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHC---cCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 78999998 99999999999999999999999999 999999999999999999999999999999999998876543
No 46
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.62 E-value=5.2e-20 Score=125.93 Aligned_cols=74 Identities=19% Similarity=0.337 Sum_probs=71.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccc
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~ 77 (197)
|+|+||+.+|+.+.++|++++||.+||++|+...| +|+++|+|+|+|+.|+|+.+|++|||+++++|+++++.+
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlr 74 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQG---VPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPR 74 (76)
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999998765
No 47
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.75 E-value=3.3e-18 Score=122.11 Aligned_cols=72 Identities=25% Similarity=0.295 Sum_probs=69.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccc
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~ 77 (197)
|+|+||+ |+.+.++|++++||.+||++|++..| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~ 91 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEG---IAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRML 91 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHT---CCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhC---cChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 7899997 89999999999999999999999999 999999999999999999999999999999999998765
No 48
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.75 E-value=6.8e-18 Score=133.12 Aligned_cols=77 Identities=38% Similarity=0.514 Sum_probs=73.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccCCC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~~~ 80 (197)
|+|+||+++|+.+.++|++++||.+||++|+...| +|+++|||+|+|+.|+|+++|++|+|+++++|||+++.+...
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHC---cCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999877644
No 49
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.75 E-value=4.1e-18 Score=122.49 Aligned_cols=72 Identities=21% Similarity=0.306 Sum_probs=67.0
Q ss_pred CEEEEEeCCCcEE-EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccc
Q 029207 1 MKLTVKTLKGSHF-EIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (197)
Q Consensus 1 M~I~Vk~~~g~~~-~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~ 77 (197)
|+|+|| +.|+.| .|+|++++||.+||++|++..| +|+++|||+|+||.|+|+ +|++|+|+++++|+|+.+..
T Consensus 8 m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tg---ip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 8 YSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTG---VQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp EEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTC---CCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred EEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 689999 478999 6999999999999999999999 999999999999999999 99999999999999987543
No 50
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=7.4e-18 Score=123.31 Aligned_cols=75 Identities=20% Similarity=0.157 Sum_probs=68.7
Q ss_pred CEEEEEeCCC---cEEEEEeC--------C-CCCHHHHHHHHHHHh--CCCCCCCCC-eEEEeCCeecCCCCcccccccC
Q 029207 1 MKLTVKTLKG---SHFEIRVQ--------P-SDTVMAVKKNIEDVQ--GKDNYPCGQ-QLLIHNGKVLKDETTLADNKVS 65 (197)
Q Consensus 1 M~I~Vk~~~g---~~~~iev~--------~-~~TV~~LK~~I~~~~--g~~~~p~~~-qrLi~~Gk~L~D~~tL~~~~I~ 65 (197)
|+|+||..++ +.|.|+|+ + ++||.+||++|+... | +++++ |||||+||.|+|+++|++|+|+
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~g---ip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQES---VPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTT---CCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccC---CChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 7899999999 89999954 4 499999999999999 8 99999 9999999999999999999999
Q ss_pred CCCeEEEEecccC
Q 029207 66 EDGFLVVMLSKSK 78 (197)
Q Consensus 66 ~~~~I~l~~~~~~ 78 (197)
++++|||+++.+.
T Consensus 90 ~g~~i~lv~~~~~ 102 (107)
T 1x1m_A 90 PGSTVHVLRKSWS 102 (107)
T ss_dssp TTCEEEEEESSCC
T ss_pred CCCEEEEEeCCCC
Confidence 9999999987643
No 51
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=122.53 Aligned_cols=74 Identities=41% Similarity=0.599 Sum_probs=71.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccc
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~ 77 (197)
|+|+||+.+|+.+.++|++++||.+||++|++..| +++++|||+|+||.|+|+.+|++|+|+++++|+|+++.+
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~ 109 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 109 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC---CCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHC---cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999998865
No 52
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.5e-18 Score=124.73 Aligned_cols=72 Identities=28% Similarity=0.529 Sum_probs=67.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecc
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~ 76 (197)
|+|+||+ +|+.|.|+|++++||.+||++|++..| +++++|||+|+||.|+|+.+|++|||++|++|+|+.+.
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHS---CCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHC---cChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 5688897 899999999999999999999999999 99999999999999999999999999999999998764
No 53
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.73 E-value=9e-18 Score=126.26 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=65.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHH------HhCCCCC--CCCCeEEEeCCeecCCCCcccccccCCCCe--E
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIED------VQGKDNY--PCGQQLLIHNGKVLKDETTLADNKVSEDGF--L 70 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~------~~g~~~~--p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~--I 70 (197)
|+|+||+++|+++.|+|++++||.+||++|++ +.| + ++++|||||+||+|+|+++|++|+|+.+++ |
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~---ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tl 94 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEE---QVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 94 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCC---TTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccC---CCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 68999999999999999999999999999998 445 5 589999999999999999999999998874 5
Q ss_pred EEEeccc
Q 029207 71 VVMLSKS 77 (197)
Q Consensus 71 ~l~~~~~ 77 (197)
+|+++.+
T Consensus 95 hlv~r~~ 101 (125)
T 2gow_A 95 HLVARET 101 (125)
T ss_dssp EEEECSC
T ss_pred EEEecCC
Confidence 6666554
No 54
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.73 E-value=1.2e-17 Score=125.47 Aligned_cols=79 Identities=23% Similarity=0.312 Sum_probs=66.8
Q ss_pred CEEEEEeCCCcEE-EEEeCCCCCHHHHHHHHHHHhCCC--CCCC--CCeEEEeCCeecCCCCcccccccCCC------Ce
Q 029207 1 MKLTVKTLKGSHF-EIRVQPSDTVMAVKKNIEDVQGKD--NYPC--GQQLLIHNGKVLKDETTLADNKVSED------GF 69 (197)
Q Consensus 1 M~I~Vk~~~g~~~-~iev~~~~TV~~LK~~I~~~~g~~--~~p~--~~qrLi~~Gk~L~D~~tL~~~~I~~~------~~ 69 (197)
|+|+||+++|+.+ .+++++++||.+||++|+...+.+ .+|+ ++|||||+||+|+|+++|++|+|+++ .+
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999988 699999999999999996543211 1775 89999999999999999999999998 46
Q ss_pred EEEEecccCC
Q 029207 70 LVVMLSKSKT 79 (197)
Q Consensus 70 I~l~~~~~~~ 79 (197)
+||+++.+..
T Consensus 97 mhlVlrl~g~ 106 (126)
T 1se9_A 97 MHVIIQAPVT 106 (126)
T ss_dssp EEEEECCCSS
T ss_pred EEEEeccCCc
Confidence 8888776543
No 55
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.7e-17 Score=121.70 Aligned_cols=76 Identities=36% Similarity=0.507 Sum_probs=72.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccCC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~~ 79 (197)
++|+||+++|+.+.++|++++||.+||++|+...| +|+++|||+|+|+.|+|+.+|++|+|+++++|+|+++.+..
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 85 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 47999999999999999999999999999999999 99999999999999999999999999999999999987654
No 56
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.73 E-value=1.7e-17 Score=128.72 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=71.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~ 78 (197)
|+|+||+.+|+.+.++|++++||.+||++|+...| +|+++|||+|+|+.|+|+.+|++|+|+++++|+++++.+.
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~G 156 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 156 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC-
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHC---CCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998765
No 57
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.73 E-value=8.2e-18 Score=125.02 Aligned_cols=72 Identities=18% Similarity=0.243 Sum_probs=67.1
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccC-------CCCeEEE
Q 029207 1 MKLTVKTLKGS-HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVS-------EDGFLVV 72 (197)
Q Consensus 1 M~I~Vk~~~g~-~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~-------~~~~I~l 72 (197)
|.++|+...++ ++.|+|++++||.+||++|+.+.| +|+++|||||+||+|+|+++|++|||+ .+++|+|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~eg---IP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L 77 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK---RPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhC---CCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEE
Confidence 67777777676 589999999999999999999999 999999999999999999999999999 6999999
Q ss_pred Eec
Q 029207 73 MLS 75 (197)
Q Consensus 73 ~~~ 75 (197)
+++
T Consensus 78 ~lr 80 (118)
T 2fnj_B 78 AFR 80 (118)
T ss_dssp EEB
T ss_pred Eec
Confidence 998
No 58
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.73 E-value=5.3e-18 Score=122.71 Aligned_cols=71 Identities=24% Similarity=0.242 Sum_probs=64.0
Q ss_pred CEEEEEeCCCc--EEEEEeCCCCCHHHHHHHHHHHh-CCCCCCCCCeEEEeCCeecCCCCccccc--ccCCCCeEEEE
Q 029207 1 MKLTVKTLKGS--HFEIRVQPSDTVMAVKKNIEDVQ-GKDNYPCGQQLLIHNGKVLKDETTLADN--KVSEDGFLVVM 73 (197)
Q Consensus 1 M~I~Vk~~~g~--~~~iev~~~~TV~~LK~~I~~~~-g~~~~p~~~qrLi~~Gk~L~D~~tL~~~--~I~~~~~I~l~ 73 (197)
|+|+||+++|+ .+.|+|++++||.+||++|+++. |. .++++|||||+||+|+|+++|++| +|+++++|+|+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~--pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSK--PLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTC--CCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCC--CChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999999998 67899999999999999999874 51 456999999999999999999999 99999999874
No 59
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.72 E-value=1.2e-17 Score=123.85 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=68.3
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCC-------CCeEEE
Q 029207 1 MKLTVKTLKGS-HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSE-------DGFLVV 72 (197)
Q Consensus 1 M~I~Vk~~~g~-~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~-------~~~I~l 72 (197)
|.|+|+...++ ++.+++++++||.+||++|+.+.| +|+++|||||+||+|+|+++|++|||++ +++|+|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~g---iPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~L 77 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK---RPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHC---CCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEE
Confidence 77888876666 788999999999999999999999 9999999999999999999999999999 999999
Q ss_pred Eecc
Q 029207 73 MLSK 76 (197)
Q Consensus 73 ~~~~ 76 (197)
+++.
T Consensus 78 vlr~ 81 (118)
T 4ajy_B 78 AFRA 81 (118)
T ss_dssp EECC
T ss_pred EEec
Confidence 9986
No 60
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2.6e-17 Score=116.89 Aligned_cols=73 Identities=26% Similarity=0.396 Sum_probs=66.9
Q ss_pred CEEEEEeCCCcEEEEEeCCC-----CCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCC-CCcccccccCCCCeEEEEe
Q 029207 1 MKLTVKTLKGSHFEIRVQPS-----DTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKD-ETTLADNKVSEDGFLVVML 74 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~-----~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D-~~tL~~~~I~~~~~I~l~~ 74 (197)
|+|+||. .|+.|.|+|+++ +||.+||++|+...| +|+++|||+|+||.|+| +.+|++|+|+++++|+|+.
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~g---ip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIG---VPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTC---CCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHC---cCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 6899997 588999999985 999999999999999 99999999999999988 6689999999999999987
Q ss_pred ccc
Q 029207 75 SKS 77 (197)
Q Consensus 75 ~~~ 77 (197)
+..
T Consensus 84 ~~~ 86 (92)
T 1wxv_A 84 KKN 86 (92)
T ss_dssp CCS
T ss_pred cCC
Confidence 553
No 61
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.72 E-value=1.6e-17 Score=122.16 Aligned_cols=76 Identities=28% Similarity=0.361 Sum_probs=71.9
Q ss_pred CEEEEEeC---CCcEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecc
Q 029207 1 MKLTVKTL---KGSHFEIRVQP-SDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (197)
Q Consensus 1 M~I~Vk~~---~g~~~~iev~~-~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~ 76 (197)
|+|+|++. +|+.+.++|++ ++||.+||++|+...| +|+++|||+|+|++|+|+.+|++|+|+++++|+|+++.
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~g---ip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQ---IPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTT---CCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHC---CCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 68999998 88999999998 9999999999999999 99999999999999999999999999999999999987
Q ss_pred cCC
Q 029207 77 SKT 79 (197)
Q Consensus 77 ~~~ 79 (197)
+..
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 62
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.72 E-value=2e-17 Score=117.31 Aligned_cols=72 Identities=21% Similarity=0.371 Sum_probs=68.1
Q ss_pred CEEEEEeCCCcEEEE-EeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE---eCCeecCCCCcccccccCCCCeEEEEecc
Q 029207 1 MKLTVKTLKGSHFEI-RVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI---HNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (197)
Q Consensus 1 M~I~Vk~~~g~~~~i-ev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi---~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~ 76 (197)
|+|+||. .|+.|.| +|++++||.+||++|++..| +|+++|||+ |+||+|+|+.+|++|+|+++++|+|+...
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~g---ip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTG---VLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTC---CCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHC---cCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 7899995 7899999 99999999999999999999 999999999 99999999999999999999999998754
No 63
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.71 E-value=2.3e-17 Score=132.21 Aligned_cols=77 Identities=38% Similarity=0.514 Sum_probs=73.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccCCC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~~~ 80 (197)
|+|+||+++|++|.|+|++++||.+||++|+...| +|+++|||+|+|++|+|+.+|++|+|+++++|+|+++.+...
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~g---Ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~ 182 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 182 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccC---CCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999876543
No 64
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.71 E-value=4e-17 Score=128.39 Aligned_cols=75 Identities=40% Similarity=0.586 Sum_probs=72.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~ 78 (197)
|+|+||+++|+.+.|+|++++||.+||++|+...| +|+++|||+|+|+.|+|+.+|++|+|+++++|+|+++.+.
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~g 95 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 95 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCccccccCCHhHcCCcccceeeeeecccc
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999987643
No 65
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.71 E-value=4.5e-17 Score=114.39 Aligned_cols=70 Identities=27% Similarity=0.354 Sum_probs=65.9
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEec
Q 029207 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLS 75 (197)
Q Consensus 3 I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~ 75 (197)
+.++.++|+.|.++|++++||.+||++|+...| +|+++|||+|+||.|+|+.+|++|||+++++|+|+.+
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITN---VLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHC---CCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 456778999999999999999999999999999 9999999999999999999999999999999999864
No 66
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=4e-17 Score=120.61 Aligned_cols=74 Identities=19% Similarity=0.276 Sum_probs=67.8
Q ss_pred EEEEE-eCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccC
Q 029207 2 KLTVK-TLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (197)
Q Consensus 2 ~I~Vk-~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~ 78 (197)
.|+|+ ...|+.|.++++++.||++||++|+...+ +|+++|+|||+||+|+|+.+|++|||+++.+|||+++...
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~---iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~ 91 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLG---IPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTN 91 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHT---CCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESC
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhC---CChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCC
Confidence 45665 55788999999999999999999999999 9999999999999999999999999999999999987643
No 67
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.70 E-value=5.6e-17 Score=125.74 Aligned_cols=73 Identities=30% Similarity=0.432 Sum_probs=70.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE-e-CCeecCCCCcccccccCCCCeEEEEecc
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI-H-NGKVLKDETTLADNKVSEDGFLVVMLSK 76 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi-~-~Gk~L~D~~tL~~~~I~~~~~I~l~~~~ 76 (197)
|+|+||+++|+.|.++|++++||.+||++|+...| +|+++|||+ | +|+.|+|+.+|++|+|+++++|+++++.
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~ 77 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIG---VHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDK 77 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHC---CCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccC
Confidence 79999999999999999999999999999999999 999999999 9 7999999999999999999999999873
No 68
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.70 E-value=6.5e-17 Score=117.88 Aligned_cols=73 Identities=19% Similarity=0.212 Sum_probs=68.1
Q ss_pred CEEEEEeCCC--cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCccccccc-CCCCeEEEEecc
Q 029207 1 MKLTVKTLKG--SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKV-SEDGFLVVMLSK 76 (197)
Q Consensus 1 M~I~Vk~~~g--~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I-~~~~~I~l~~~~ 76 (197)
|+|+|++..+ ..+.|+|++++||.+||++|++++| +|+++|||+|+|+.|+|+++|++||| ++|+++||++.-
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~G---ipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYG---FPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhC---CCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 6899999874 6899999999999999999999999 99999999999999999999999999 599999999753
No 69
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=2.2e-17 Score=118.36 Aligned_cols=71 Identities=23% Similarity=0.356 Sum_probs=65.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecc
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~ 76 (197)
|+|+|| +.|+.|.|+|++++||.+||++|+...| +|+++|||+|+||.| |+.+|++|+|+++++|+|+.+.
T Consensus 18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tg---ip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITG---LPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHC---SCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCSS
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEecc
Confidence 678898 5789999999999999999999999999 999999999999999 4559999999999999998654
No 70
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.69 E-value=1.5e-18 Score=130.89 Aligned_cols=76 Identities=38% Similarity=0.540 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccCC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~~ 79 (197)
|+|+|++++|++|.|+|++++||.+||.+|+...| +|+++|+|+|+|+.|+|+.+|++|||+++++|+|+++.+..
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC---cChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987654
No 71
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.68 E-value=2.2e-17 Score=104.59 Aligned_cols=45 Identities=49% Similarity=0.910 Sum_probs=43.1
Q ss_pred cccCCCchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 146 NLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 146 ~l~~g~~~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
.|++|+++++.|++|++|| |+|++|++|||+++||++||+|||++
T Consensus 1 ~~~~~~~~~~~i~~L~~MG---F~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 1 TLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp CCCCSHHHHHHHHHHHHTT---CCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CCCCCccCHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3678999999999999999 99999999999999999999999997
No 72
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.68 E-value=2.2e-16 Score=120.79 Aligned_cols=74 Identities=41% Similarity=0.599 Sum_probs=71.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccc
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~ 77 (197)
|+|+||+++|+.+.++|++++||.+||++|+...| +|+++|+|+|+|+.|+|+.+|++|||+++++|+|+.+.+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~ 74 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCT
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecc
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999998643
No 73
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.67 E-value=3e-16 Score=119.94 Aligned_cols=75 Identities=40% Similarity=0.586 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~ 78 (197)
|+|+|++.+|+.+.++|++++||.+||++|+...| +|+++|||+|+|+.|+|+.+|++|+|+++++|+|+++.+.
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G 151 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 67999999999999999999999999999999999 9999999999999999999999999999999999987653
No 74
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.67 E-value=2.2e-16 Score=116.78 Aligned_cols=76 Identities=22% Similarity=0.390 Sum_probs=69.4
Q ss_pred CEEEEEeC----------CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeE
Q 029207 1 MKLTVKTL----------KGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFL 70 (197)
Q Consensus 1 M~I~Vk~~----------~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I 70 (197)
++|+|+.. +|+.+.|+|++++||.+||.+|+...| +|+++|||+|+|+.|+|+.+|++|+|+++++|
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i 102 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATG---MPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSS---CCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHC---CChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 35677764 478999999999999999999999999 99999999999999999999999999999999
Q ss_pred EEEecccCC
Q 029207 71 VVMLSKSKT 79 (197)
Q Consensus 71 ~l~~~~~~~ 79 (197)
+|+++.+..
T Consensus 103 ~lv~rl~GG 111 (115)
T 1we7_A 103 HLALKERSG 111 (115)
T ss_dssp EEEECCCSC
T ss_pred EEEEEcCCC
Confidence 999987654
No 75
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=125.03 Aligned_cols=75 Identities=40% Similarity=0.586 Sum_probs=69.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~ 78 (197)
|.|+||+.+|+.+.++|++++||.+||++|+...| +|+++|||+|+|+.|+|+.+|++|+|+++++|+|+++.+.
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrg 171 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 171 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC----
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhC---CCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCC
Confidence 57899999999999999999999999999999999 9999999999999999999999999999999999987653
No 76
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.66 E-value=8.6e-18 Score=130.43 Aligned_cols=77 Identities=38% Similarity=0.514 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccCCC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~~~ 80 (197)
|+|+|++++|+.+.|+|++++||.+||.+|++..| +|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++.+...
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999876543
No 77
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.5e-16 Score=112.54 Aligned_cols=69 Identities=23% Similarity=0.276 Sum_probs=63.3
Q ss_pred CEEEEEeCCCcEE--EE-EeCCCCCHHHHHHHHHHH-hCCCCCCCCCeEEEeC--CeecCCCCcccccccCCCCeEEE
Q 029207 1 MKLTVKTLKGSHF--EI-RVQPSDTVMAVKKNIEDV-QGKDNYPCGQQLLIHN--GKVLKDETTLADNKVSEDGFLVV 72 (197)
Q Consensus 1 M~I~Vk~~~g~~~--~i-ev~~~~TV~~LK~~I~~~-~g~~~~p~~~qrLi~~--Gk~L~D~~tL~~~~I~~~~~I~l 72 (197)
|+|+||++.|+.+ .| +|++++||.+||++|++. .| +++++|||+|. ||+|+|+++|++|+|+++++|+|
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~---i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQ---WYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSS---SCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcC---CChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 7899999998775 58 999999999999999995 67 99999999976 99999999999999999999875
No 78
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.61 E-value=1.6e-15 Score=129.59 Aligned_cols=74 Identities=41% Similarity=0.599 Sum_probs=69.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccc
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~ 77 (197)
|+|+||+++|+.+.|+|++++||.+||++|++..| +++++|||+|+||+|+|+++|++|+|+++++|+|+++.+
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~G---Ip~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999998753
No 79
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=8.5e-16 Score=111.24 Aligned_cols=72 Identities=19% Similarity=0.263 Sum_probs=65.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCCCcccccccCCCCeEEEEecc
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH--NGKVLKDETTLADNKVSEDGFLVVMLSK 76 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~--~Gk~L~D~~tL~~~~I~~~~~I~l~~~~ 76 (197)
|.++++.++|+.+.|+|++++||.+||++|++++| +|+++|||+| .|+ |+|+.+|++|+|+.+++|||++..
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tg---Ipp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQ---IPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHC---CCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHC---CChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecC
Confidence 56677779999999999999999999999999999 9999999996 566 999999999999999999987643
No 80
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.59 E-value=1.5e-15 Score=107.04 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=64.0
Q ss_pred EEEEEe--CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-------CCeecCCCCcccccccCCCCeEEE
Q 029207 2 KLTVKT--LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH-------NGKVLKDETTLADNKVSEDGFLVV 72 (197)
Q Consensus 2 ~I~Vk~--~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~-------~Gk~L~D~~tL~~~~I~~~~~I~l 72 (197)
+|.|.. .+++.+++.+++++||.+||.+|+..+| +|+++||||| .|+.|+|+++|++|||++|++|||
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~G---ip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFA---TPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSC---CCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEE
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHC---CCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEE
Confidence 455543 3556789999999999999999999999 9999999997 488999999999999999999999
Q ss_pred Eeccc
Q 029207 73 MLSKS 77 (197)
Q Consensus 73 ~~~~~ 77 (197)
+-+.|
T Consensus 81 vd~~P 85 (86)
T 4b6w_A 81 VDLQP 85 (86)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 97654
No 81
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.58 E-value=3.2e-15 Score=109.26 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=65.5
Q ss_pred CEEEEEeCCCcEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe-----------e----cCCCCccccccc
Q 029207 1 MKLTVKTLKGSHFEIRVQ-PSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGK-----------V----LKDETTLADNKV 64 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~-~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk-----------~----L~D~~tL~~~~I 64 (197)
|.|+||+.+|+. .|+|+ +++||.+||++|+.+.| +++++|+|+|.|+ . ++|+++|++|||
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~g---ip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi 83 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQ---IPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNL 83 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSC---CCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhC---cCcccCEEEECCccccccCccccccccccCCCCCCHHHCCC
Confidence 789999999965 89999 99999999999999999 9999999999998 4 588999999999
Q ss_pred CCCCeEEEEec
Q 029207 65 SEDGFLVVMLS 75 (197)
Q Consensus 65 ~~~~~I~l~~~ 75 (197)
++|++|||+..
T Consensus 84 ~~G~~L~l~~~ 94 (107)
T 1wf9_A 84 AHGSMVYLAYE 94 (107)
T ss_dssp CTTCEEECCCS
T ss_pred CCCCEEEEEeC
Confidence 99999998765
No 82
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.57 E-value=8.6e-15 Score=104.98 Aligned_cols=70 Identities=20% Similarity=0.230 Sum_probs=62.2
Q ss_pred CEEEEEeCCC--cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC--Ce---ec-CCCCcccccccCCCCeEEE
Q 029207 1 MKLTVKTLKG--SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN--GK---VL-KDETTLADNKVSEDGFLVV 72 (197)
Q Consensus 1 M~I~Vk~~~g--~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~--Gk---~L-~D~~tL~~~~I~~~~~I~l 72 (197)
++|+|+...+ +.++++|++++||.+||++|+..+| +|+++|||+|. |+ .| +|+++|++|+|++|++|+|
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~G---iP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTG---GCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHC---SCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHC---cCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 3677887655 4789999999999999999999999 99999999998 55 44 8999999999999999998
Q ss_pred E
Q 029207 73 M 73 (197)
Q Consensus 73 ~ 73 (197)
+
T Consensus 93 v 93 (95)
T 2kjr_A 93 V 93 (95)
T ss_dssp E
T ss_pred E
Confidence 6
No 83
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.54 E-value=4.9e-16 Score=124.10 Aligned_cols=71 Identities=21% Similarity=0.308 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccCC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~~ 79 (197)
|+|+||+++|++|.|+|++++||.+||.+|+...| +|+++|||||+|++|+|+.+|+ ++++|+|+++.+..
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keG---IP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG 71 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMG---FEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGG 71 (189)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhC---cChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999 78999999987643
No 84
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.54 E-value=1.7e-14 Score=103.84 Aligned_cols=71 Identities=17% Similarity=0.045 Sum_probs=62.3
Q ss_pred EEEEEeCCC--cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee----cCCCCcccccccCCCCeEEE
Q 029207 2 KLTVKTLKG--SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG---KV----LKDETTLADNKVSEDGFLVV 72 (197)
Q Consensus 2 ~I~Vk~~~g--~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~G---k~----L~D~~tL~~~~I~~~~~I~l 72 (197)
+|.|+.... +.++++|++++||.+||++|+..+| +|+++|||+|.| +. ++|+++|++|+|++|++|+|
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~G---ip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCG---TSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHC---CCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHC---cCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 567776443 5789999999999999999999999 999999999988 33 48899999999999999999
Q ss_pred Eec
Q 029207 73 MLS 75 (197)
Q Consensus 73 ~~~ 75 (197)
+-.
T Consensus 93 vd~ 95 (97)
T 2kj6_A 93 IDL 95 (97)
T ss_dssp EEC
T ss_pred EeC
Confidence 854
No 85
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.53 E-value=2.6e-14 Score=102.11 Aligned_cols=73 Identities=22% Similarity=0.175 Sum_probs=63.4
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee----cCCCCcccccccCCCCeEEE
Q 029207 1 MKLTVKTLKGS-HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG---KV----LKDETTLADNKVSEDGFLVV 72 (197)
Q Consensus 1 M~I~Vk~~~g~-~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~G---k~----L~D~~tL~~~~I~~~~~I~l 72 (197)
+.|+|+..... .++++|++++||.+||++|+...| +|+++|||+|.| +. ++|+++|++|||+++++|||
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~g---ip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVG---SPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTC---SCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHC---CCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence 36778875543 688999999999999999999999 999999999986 54 58999999999999999998
Q ss_pred Eecc
Q 029207 73 MLSK 76 (197)
Q Consensus 73 ~~~~ 76 (197)
+-..
T Consensus 85 ~d~~ 88 (95)
T 1v6e_A 85 IDHS 88 (95)
T ss_dssp BCCS
T ss_pred EECC
Confidence 7644
No 86
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.51 E-value=3.6e-14 Score=99.55 Aligned_cols=71 Identities=18% Similarity=0.336 Sum_probs=63.4
Q ss_pred CEEEEEeCCCcEEEEE-eCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC--CeecC---CCCcccccccCCCCeEEEEe
Q 029207 1 MKLTVKTLKGSHFEIR-VQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN--GKVLK---DETTLADNKVSEDGFLVVML 74 (197)
Q Consensus 1 M~I~Vk~~~g~~~~ie-v~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~--Gk~L~---D~~tL~~~~I~~~~~I~l~~ 74 (197)
|+|+||+.+|+. .++ +++++||.+||.+|++..| +++++|+|+|+ +|.|+ |+++|++|||++|++|+|..
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~g---i~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITG---IAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTC---CCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhC---CCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 899999999954 587 9999999999999999999 99999999987 48874 68899999999999998865
Q ss_pred c
Q 029207 75 S 75 (197)
Q Consensus 75 ~ 75 (197)
.
T Consensus 77 ~ 77 (86)
T 2kzr_A 77 D 77 (86)
T ss_dssp C
T ss_pred C
Confidence 4
No 87
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.50 E-value=7.3e-14 Score=99.93 Aligned_cols=76 Identities=16% Similarity=0.248 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccCC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~~ 79 (197)
|+|+|++.+|+.+.+.|.+++++..||+.++++.| ++++++||+|.|+.|.+++|+++|+++++++|+|+++....
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 67999999999999999999999999999999999 99999999999999999999999999999999999987654
No 88
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.50 E-value=2.2e-14 Score=97.78 Aligned_cols=41 Identities=37% Similarity=0.462 Sum_probs=38.9
Q ss_pred CCchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 150 g~~~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
.+++++.|++|++|| |+|++|++|||+++||+++|+|||++
T Consensus 26 ~~~~ee~I~~L~eMG---F~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 26 VAASEEQIQKLVAMG---FDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp SCCCHHHHHHHHTTT---CCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CcccHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445789999999999 99999999999999999999999998
No 89
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.48 E-value=3.9e-14 Score=87.10 Aligned_cols=38 Identities=21% Similarity=0.393 Sum_probs=36.4
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 153 ~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
.++.|++|++|| |+|++|++||++++||+++|+|||++
T Consensus 4 ~e~~i~~L~~MG---F~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 4 KSLAVEELSGMG---FTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHHTTT---SCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 478999999999 99999999999999999999999986
No 90
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=99.48 E-value=5.9e-14 Score=89.75 Aligned_cols=41 Identities=24% Similarity=0.388 Sum_probs=38.7
Q ss_pred CCchHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 150 GNDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 150 g~~~~~~i~~l~~MG~~~~-~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
...+++.|++|++|| | +|+.+++||++++||+++|+|||++
T Consensus 9 ~~~~~~~l~~L~~MG---F~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 9 EVRFQQQLEQLSAMG---FLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp TTTTHHHHHHHHHTT---CCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 346799999999999 9 9999999999999999999999997
No 91
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=99.47 E-value=5.3e-14 Score=87.71 Aligned_cols=39 Identities=28% Similarity=0.419 Sum_probs=36.6
Q ss_pred chHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 152 DLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 152 ~~~~~i~~l~~MG~~~~-~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
.+++.|++|++|| | +|+.+++||++++||++||||||++
T Consensus 6 ~~~~~i~~L~~MG---F~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 6 RYEHQLRQLNDMG---FFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HTHHHHHHHHHTT---CCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 4789999999999 9 6888999999999999999999986
No 92
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.46 E-value=3.4e-13 Score=91.65 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=68.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEe
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~ 74 (197)
|+|+|++.+|+.+.+.|.+++++..|++.++++.| ++++++||+|.|+.|.++.|.++|++.+|++|++++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHT---CCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 67999999999999999999999999999999999 999999999999999999999999999999999873
No 93
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.46 E-value=1.1e-13 Score=94.41 Aligned_cols=41 Identities=17% Similarity=0.387 Sum_probs=38.7
Q ss_pred CCchHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 150 GNDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 150 g~~~~~~i~~l~~MG~~~~-~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
...|++.|++|++|| | +|+.+++||++++||++||||||++
T Consensus 26 e~~ye~qi~qL~eMG---F~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 26 EGRYQQELEELKALG---FANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp TTTSHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 456899999999999 9 7999999999999999999999998
No 94
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.45 E-value=2.2e-13 Score=101.71 Aligned_cols=74 Identities=15% Similarity=0.111 Sum_probs=64.0
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee----cCCCCcccccccCCCCeEEE
Q 029207 1 MKLTVKTLKGS-HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG---KV----LKDETTLADNKVSEDGFLVV 72 (197)
Q Consensus 1 M~I~Vk~~~g~-~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~G---k~----L~D~~tL~~~~I~~~~~I~l 72 (197)
|.|+|+...+. .++++|++++||.+||.+|+...| +|+++|||+|.| +. ++|+++|++|||++|++|||
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~G---ip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVG---TTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHC---CCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhC---CCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 46778876553 688999999999999999999999 999999999987 43 48899999999999999999
Q ss_pred Eeccc
Q 029207 73 MLSKS 77 (197)
Q Consensus 73 ~~~~~ 77 (197)
+...+
T Consensus 84 vd~~p 88 (122)
T 1t0y_A 84 VDVTG 88 (122)
T ss_dssp EECTT
T ss_pred EeCCC
Confidence 87543
No 95
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.45 E-value=7.8e-14 Score=119.99 Aligned_cols=72 Identities=19% Similarity=0.251 Sum_probs=65.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE---eCCeecCCCCcccccccCCCCeEEEEecc
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI---HNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi---~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~ 76 (197)
|+|+|| ++|+.|.|+|++++||.+||++|++.+| +|+++|||| |+||+|+|+.+|++|||++|++|+||.+.
T Consensus 6 i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tg---Vpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~ 80 (320)
T 3shq_A 6 VVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQ---VRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGST 80 (320)
T ss_dssp EEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCC
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccc
Confidence 578899 5899999999999999999999999999 999999999 89999999999999999999999999654
No 96
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.45 E-value=6.5e-14 Score=90.93 Aligned_cols=37 Identities=32% Similarity=0.635 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 154 EQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 154 ~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
++.|.+|++|| |+++|+++||++..||+|||+|||++
T Consensus 20 ~e~V~~LvsMG---Fs~~qA~kALKat~~NvErAaDWLFS 56 (63)
T 1wgn_A 20 RQCVETVVNMG---YSYECVLRAMKKKGENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHHHHHH---CCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 67899999999 99999999999999999999999999
No 97
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=99.44 E-value=8.7e-14 Score=89.31 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=38.2
Q ss_pred CchHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 151 NDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 151 ~~~~~~i~~l~~MG~~~~-~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
..|++.|++|++|| | +|+.+++||++++||++||+|||++
T Consensus 9 ~~~~~~l~~L~~MG---F~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 9 VRFQQQLEQLNSMG---FINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHHTTT---CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 45889999999999 9 9999999999999999999999997
No 98
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.44 E-value=5.5e-13 Score=94.80 Aligned_cols=75 Identities=16% Similarity=0.256 Sum_probs=71.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~ 78 (197)
|+|+|++.+|+.+.+.|.+++++..|++.++++.| +++.++||+|.|+.|.+++|+++|++.++++|.|+.....
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~g 80 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 80 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTT---CCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 57899999999999999999999999999999999 9999999999999999999999999999999999987654
No 99
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=99.43 E-value=1.9e-13 Score=82.52 Aligned_cols=39 Identities=31% Similarity=0.492 Sum_probs=36.4
Q ss_pred CchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhh
Q 029207 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLY 192 (197)
Q Consensus 151 ~~~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~ 192 (197)
+++++.|++|++|| |+|++|++||++++||+++|++||+
T Consensus 2 ~~~~~~i~~L~~mG---f~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSMG---FDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 45789999999999 9999999999999999999999996
No 100
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.42 E-value=1.2e-13 Score=96.10 Aligned_cols=38 Identities=26% Similarity=0.311 Sum_probs=37.0
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 153 ~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
.++.|++|++|| |+|++|++|||+++||++||+|||++
T Consensus 29 ~ee~I~~Lv~MG---F~~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 29 SQESINQLVYMG---FDTVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp CHHHHHHHHHHS---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 589999999999 99999999999999999999999998
No 101
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.41 E-value=1.2e-12 Score=90.56 Aligned_cols=70 Identities=17% Similarity=0.290 Sum_probs=66.9
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 029207 1 MKLTVKTLKGS-HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (197)
Q Consensus 1 M~I~Vk~~~g~-~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~ 73 (197)
|+|+|++.+|+ .+.+.|.+++++..|+..++++.| ++++++||+|.|+.|.+++|+++|++.++++|+|+
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMG---LSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHT---CTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 57899999996 899999999999999999999999 99999999999999999999999999999999986
No 102
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.40 E-value=2.1e-13 Score=90.54 Aligned_cols=38 Identities=34% Similarity=0.491 Sum_probs=36.9
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 153 ~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
.++.|++|++|| |+|++|++||++++||+++|+|||++
T Consensus 9 ~~~~I~~L~~MG---F~~~~a~~AL~~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 9 DEKALKHITEMG---FSKEASRQALMDNGNNLEAALNVLLT 46 (63)
T ss_dssp CHHHHHHHHTTT---CCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 589999999999 99999999999999999999999997
No 103
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.40 E-value=2.2e-13 Score=88.82 Aligned_cols=40 Identities=28% Similarity=0.416 Sum_probs=37.6
Q ss_pred CchHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 151 NDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 151 ~~~~~~i~~l~~MG~~~~-~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
..+++.|++|++|| | +|+.+++||++++||++||||||++
T Consensus 15 ~~~~~qi~~L~~MG---F~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 15 ERYEHQLRQLNDMG---FFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHTHHHHHHHHHHT---CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 45889999999999 9 6999999999999999999999997
No 104
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.40 E-value=1.3e-12 Score=93.17 Aligned_cols=74 Identities=16% Similarity=0.264 Sum_probs=69.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccc
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~ 77 (197)
|.|+|++.+|+.+.+.|.+++++..|+..++++.| ++++.+||+|.|+.|.++.|+++|++.++++|+|++...
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 91 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhC---CCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 57889988999999999999999999999999999 999999999999999999999999999999999998654
No 105
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.39 E-value=2.5e-13 Score=92.71 Aligned_cols=38 Identities=18% Similarity=0.529 Sum_probs=36.9
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 153 ~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
.++.|++|++|| |+|++|++|||+++||++||+|||++
T Consensus 29 ~~~~v~~L~~MG---F~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 29 DQSSVDTLLSFG---FAEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 588999999999 99999999999999999999999998
No 106
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.5e-13 Score=90.21 Aligned_cols=38 Identities=37% Similarity=0.682 Sum_probs=37.0
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 153 ~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
+++.|++|++|| |+|++|++|||+++||+++|+|||++
T Consensus 9 ~~~~v~~L~~MG---F~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 9 PEDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 589999999999 99999999999999999999999998
No 107
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.2e-13 Score=84.51 Aligned_cols=37 Identities=38% Similarity=0.626 Sum_probs=35.3
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 153 ~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
+++.|++|++|| |+|++|++||+++ ||+++|+|||++
T Consensus 9 ~~~~v~~L~~MG---F~~~~a~~AL~~~-~n~e~A~~~L~~ 45 (47)
T 2ekk_A 9 NQQQLQQLMDMG---FTREHAMEALLNT-STMEQATEYLLT 45 (47)
T ss_dssp CHHHHHHHHHHH---CCHHHHHHHHHHS-CSHHHHHHHHHT
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHc-CCHHHHHHHHHc
Confidence 589999999999 9999999999999 599999999987
No 108
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.38 E-value=1.6e-12 Score=94.51 Aligned_cols=75 Identities=16% Similarity=0.261 Sum_probs=70.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~ 78 (197)
|+|+|++.+|+.+.+.|.+++++..|+..++++.| ++++.+||+|.|+.|.+++|+.+|++.++++|+|++....
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 99 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTS 99 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHT---CCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 57899999999999999999999999999999999 9999999999999999999999999999999999987654
No 109
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.35 E-value=4.3e-13 Score=89.28 Aligned_cols=40 Identities=20% Similarity=0.430 Sum_probs=37.2
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CHHHHHHHhhC-cC
Q 029207 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYN-NPERAVDYLYS-IS 195 (197)
Q Consensus 153 ~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~-N~~~A~EyL~~-~~ 195 (197)
.++.|++|++|| |+|++|++|||+++| |+++|+|||++ ++
T Consensus 19 ~e~~i~~L~~MG---F~~~~a~~AL~~t~~~nve~A~ewL~~~~~ 60 (64)
T 2cpw_A 19 HGSALDVLLSMG---FPRARAQKALASTGGRSVQTACDWLFSHSG 60 (64)
T ss_dssp CCCHHHHHHHHT---CCHHHHHHHHHHTTTSCHHHHHHHHHSCCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 357899999999 999999999999998 99999999998 54
No 110
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.35 E-value=7.2e-13 Score=88.49 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=36.8
Q ss_pred CchHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 151 NDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 151 ~~~~~~i~~l~~MG~~~~-~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
..|++.|++|++|| | +|+.+++||++++||++||||||++
T Consensus 17 ~~y~~ql~qL~~MG---F~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 17 VRFSKEMECLQAMG---FVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp HHTHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 35789999999999 9 6777799999999999999999998
No 111
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.33 E-value=2.5e-12 Score=94.45 Aligned_cols=75 Identities=12% Similarity=0.247 Sum_probs=70.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~ 78 (197)
|.|+|++.+|+.+.+.|.+++++..|+..++++.| ++++++||+|.|+.|.+++|+++|++.++++|+|++....
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~g---i~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQG---ISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTG 101 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHT---CCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccC
Confidence 57899999999999999999999999999999999 9999999999999999999999999999999999986543
No 112
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.32 E-value=6.8e-13 Score=88.29 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=37.6
Q ss_pred CCchHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CHHHHHHHhhC
Q 029207 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAAYN-NPERAVDYLYS 193 (197)
Q Consensus 150 g~~~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~-N~~~A~EyL~~ 193 (197)
+..+++.|++|++|| |+|+.|++||++++| |+++|+|||+.
T Consensus 6 ~~~~e~~v~~L~~MG---F~~~~a~~AL~~t~n~~~e~A~~wL~~ 47 (64)
T 2crn_A 6 SGSSPSLLEPLLAMG---FPVHTALKALAATGRKTAEEALAWLHD 47 (64)
T ss_dssp CCCSCSSHHHHHHTS---CCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcC---CCHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 344577899999999 999999999999998 99999999998
No 113
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.32 E-value=5.2e-12 Score=92.14 Aligned_cols=73 Identities=11% Similarity=0.200 Sum_probs=68.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccc
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~ 77 (197)
|+|+|++ +|+.+.+.|..++++..|+..++++.| ++++.+||+|.|+.|.++.|.++|++.++++|.|++...
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~g---i~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhC---CCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 5788999 999999999999999999999999999 999999999999999999999999999999999998654
No 114
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.5e-12 Score=89.05 Aligned_cols=38 Identities=26% Similarity=0.426 Sum_probs=36.4
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CHHHHHHHhhC
Q 029207 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYN-NPERAVDYLYS 193 (197)
Q Consensus 153 ~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~-N~~~A~EyL~~ 193 (197)
.++.|++|++|| |+|++|++|||+++| |+++|+|||++
T Consensus 9 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~~ve~A~ewL~~ 47 (74)
T 2dag_A 9 DESVIIQLVEMG---FPMDACRKAVYYTGNSGAEAAMNWVMS 47 (74)
T ss_dssp CHHHHHHHHHHS---CCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 489999999999 999999999999997 79999999998
No 115
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=4.4e-12 Score=88.53 Aligned_cols=38 Identities=26% Similarity=0.444 Sum_probs=37.0
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 153 ~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
.++.|++|++|| |+|++|++||++++||+++|+|||++
T Consensus 29 ~e~~i~~L~~MG---F~~~~a~~AL~~t~~nve~A~ewL~~ 66 (83)
T 2dai_A 29 DEAALRQLTEMG---FPENRATKALQLNHMSVPQAMEWLIE 66 (83)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 689999999999 99999999999999999999999998
No 116
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.30 E-value=2.2e-12 Score=82.93 Aligned_cols=41 Identities=24% Similarity=0.382 Sum_probs=36.6
Q ss_pred chHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCHHHHHHHhhC-cC
Q 029207 152 DLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYS-IS 195 (197)
Q Consensus 152 ~~~~~i~~l~~MG~~~~-~~~~~~~aL~~~~~N~~~A~EyL~~-~~ 195 (197)
.|++.|++|++|| | +++.+++||+++++|++||||||++ ++
T Consensus 8 ~~~~~l~~L~~MG---F~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~ 50 (54)
T 2dah_A 8 HFQVQLEQLRSMG---FLNREANLQALIATGGDVDAAVEKLRQSSG 50 (54)
T ss_dssp SSHHHHHHHHHHT---CCCHHHHHHHHHHHTSCHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 4789999999999 9 5556799999999999999999998 44
No 117
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.30 E-value=1e-12 Score=87.47 Aligned_cols=37 Identities=22% Similarity=0.462 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCHHHHHHHhhC
Q 029207 154 EQTIQQIMDMGGGTWDKETVTRALQAA-YNNPERAVDYLYS 193 (197)
Q Consensus 154 ~~~i~~l~~MG~~~~~~~~~~~aL~~~-~~N~~~A~EyL~~ 193 (197)
++.|++|++|| |+|++|++|||++ ++|+++|+|||++
T Consensus 10 ~~~v~~L~~MG---F~~~~a~~AL~~t~~~nve~A~ewLl~ 47 (64)
T 1whc_A 10 LTALESLIEMG---FPRGRAEKALALTGNQGIEAAMDWLME 47 (64)
T ss_dssp CCHHHHHHTTT---CCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 57899999999 9999999999999 5999999999998
No 118
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.23 E-value=1.2e-11 Score=86.73 Aligned_cols=38 Identities=29% Similarity=0.494 Sum_probs=36.7
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 153 ~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
.++.|++|++|| |+|++|++||++.++|+++|+|||++
T Consensus 21 n~~~I~qL~~MG---F~~~~a~~AL~~~n~n~e~A~ewL~~ 58 (85)
T 2dkl_A 21 MSRLIKQLTDMG---FPREPAEEALKSNNMNLDQAMSALLE 58 (85)
T ss_dssp HHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 388999999999 99999999999999999999999998
No 119
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.23 E-value=7.8e-12 Score=87.49 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=36.1
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhc-CCHHHHHHHhhC
Q 029207 153 LEQTIQQIMDMGGGTWDKETVTRALQAAY-NNPERAVDYLYS 193 (197)
Q Consensus 153 ~~~~i~~l~~MG~~~~~~~~~~~aL~~~~-~N~~~A~EyL~~ 193 (197)
+++.|++|++|| |+|++|++||++++ +|+++|+|||++
T Consensus 29 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~n~e~A~ewL~~ 67 (84)
T 1vek_A 29 NEEIVAQLVSMG---FSQLHCQKAAINTSNAGVEEAMNWLLS 67 (84)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 489999999999 99999999999997 599999999998
No 120
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.22 E-value=3.6e-11 Score=85.90 Aligned_cols=72 Identities=25% Similarity=0.247 Sum_probs=61.9
Q ss_pred EEEEEe---CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC------ee-c-CCCCcccccccCCCCeE
Q 029207 2 KLTVKT---LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG------KV-L-KDETTLADNKVSEDGFL 70 (197)
Q Consensus 2 ~I~Vk~---~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~G------k~-L-~D~~tL~~~~I~~~~~I 70 (197)
+|+|+. .+|+.+++.+..++||.+||.+|+..+| +|+..|||.|.+ .. | +|.++|++|+|.+|++|
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~g---ip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I 87 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLK---VPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCL 87 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTT---CCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHC---CChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEE
Confidence 566764 4678899999999999999999999999 999999999873 22 5 67789999999999999
Q ss_pred EEEecc
Q 029207 71 VVMLSK 76 (197)
Q Consensus 71 ~l~~~~ 76 (197)
||....
T Consensus 88 ~V~d~~ 93 (97)
T 1wjn_A 88 LVRWSG 93 (97)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 998744
No 121
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=99.21 E-value=3.7e-12 Score=79.64 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=38.4
Q ss_pred CchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC-cC
Q 029207 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS-IS 195 (197)
Q Consensus 151 ~~~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~-~~ 195 (197)
++.++.|++|++|| |+|.+|++||.+..+|.++|++||++ ++
T Consensus 2 ~~e~eaI~rL~~mG---F~~~~a~~Al~a~~~n~e~A~~~Lf~~~~ 44 (47)
T 1dv0_A 2 SQEKEAIERLKALG---FPESLVIQAYFACEKNENLAANFLLSQNF 44 (47)
T ss_dssp -CCHHHHTTTTTTT---CCHHHHHHHHTTTTSCHHHHHHHTTSCCC
T ss_pred cchHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCcC
Confidence 34588999999999 99999999999999999999999998 44
No 122
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=99.15 E-value=4.7e-11 Score=74.93 Aligned_cols=38 Identities=37% Similarity=0.455 Sum_probs=35.7
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 153 ~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
.++.|++||+|| |+|++|++||+.+.||+|.|..+|+.
T Consensus 11 ~~~~Ia~Lm~mG---Fsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 11 VDAKIAKLMGEG---YAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp CHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 368999999999 99999999999999999999999874
No 123
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.10 E-value=1e-10 Score=73.76 Aligned_cols=38 Identities=32% Similarity=0.444 Sum_probs=35.7
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 153 ~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
.+..|++||+|| |+|++|++||+.+.||+|.|..+|+.
T Consensus 9 ~e~~I~~L~~lG---F~r~~ai~AL~~a~nnve~Aa~iL~e 46 (53)
T 2d9s_A 9 LSSEIERLMSQG---YSYQDIQKALVIAHNNIEMAKNILRE 46 (53)
T ss_dssp SHHHHHHHHHHT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 367799999999 99999999999999999999999986
No 124
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.10 E-value=8.6e-11 Score=88.07 Aligned_cols=40 Identities=35% Similarity=0.593 Sum_probs=37.9
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC-cC
Q 029207 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS-IS 195 (197)
Q Consensus 153 ~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~-~~ 195 (197)
.++.|++|++|| |+|++|++||++++||+++|+|||++ ++
T Consensus 78 ~e~~v~~L~~MG---F~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 78 PEEIVAIITSMG---FQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CHHHHHHHHHHT---SCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 589999999999 99999999999999999999999999 44
No 125
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=99.09 E-value=7.6e-11 Score=85.87 Aligned_cols=39 Identities=33% Similarity=0.512 Sum_probs=37.0
Q ss_pred chHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 152 DLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 152 ~~~~~i~~l~~MG~~~~-~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
.+++.|++|.+|| | +|+.+++||+++++|++||||||++
T Consensus 65 ~~~~qL~qL~eMG---F~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 65 QWQPQLQQLRDMG---IQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp TTHHHHHHHHTTT---CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred chHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4789999999999 9 7899999999999999999999997
No 126
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.09 E-value=5.7e-10 Score=82.26 Aligned_cols=73 Identities=19% Similarity=0.298 Sum_probs=68.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecc
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~ 76 (197)
|+|+|+..+|+.+.+.|..+.++..|+..++++.| ++...+||+|.|+.|.++.|..++++.++++|.|++..
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~G---l~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT---CCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhC---CChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 46888888899999999999999999999999999 99999999999999999999999999999999998754
No 127
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=99.03 E-value=4.3e-10 Score=68.49 Aligned_cols=41 Identities=32% Similarity=0.477 Sum_probs=38.4
Q ss_pred CCchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 150 g~~~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
|+.+|..|..||+|| |+|++|++||-.+.||++.|-+.|+.
T Consensus 1 ~~~~e~~I~~L~s~G---f~~~~~~rAL~ia~Nnie~A~nIL~e 41 (46)
T 2oo9_A 1 GSQLSSEIENLMSQG---YSYQDIQKALVIAQNNIEMAKNILRE 41 (46)
T ss_dssp CCHHHHHHHHHHHTT---BCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcC---CCHHHHHHHHHHhhccHHHHHHHHHH
Confidence 567899999999999 99999999999999999999998875
No 128
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.99 E-value=3.3e-10 Score=84.04 Aligned_cols=39 Identities=18% Similarity=0.400 Sum_probs=36.9
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 152 ~~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
++.+.|.+|++|| |++++|++||+...||+|||+|||++
T Consensus 75 ~~~~~v~~L~eMG---F~~~~a~~AL~~~~nd~erAlewL~~ 113 (118)
T 4ae4_A 75 EFLQLMSKFKEMG---FELKDIKEVLLLHNNDQDNALEDLMA 113 (118)
T ss_dssp HHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3667899999999 99999999999999999999999987
No 129
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.98 E-value=4.5e-10 Score=70.95 Aligned_cols=38 Identities=32% Similarity=0.441 Sum_probs=36.3
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 153 ~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
.|+.|+.||+|| |+|++|++||+.+.||++.|-..|+.
T Consensus 7 ~e~~Ia~L~smG---fsr~da~~AL~ia~Ndv~~AtNiLlE 44 (56)
T 2juj_A 7 LSSEIENLMSQG---YSYQDIQKALVIAQNNIEMAKNILRE 44 (56)
T ss_dssp HHHHHHHHHTTT---CCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred ChHHHHHHHHcC---CCHHHHHHHHHHhcccHHHHHHHHHH
Confidence 578999999999 99999999999999999999999986
No 130
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.88 E-value=7.5e-09 Score=83.22 Aligned_cols=76 Identities=11% Similarity=0.146 Sum_probs=69.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccCCC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~~~ 80 (197)
++|+|+ .+|+.+.+.|..++++..||+.++++.| ++..++||+|.|+.|.+++|..++++.+|++|.++.......
T Consensus 30 I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~G---i~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 30 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp EEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHS---SCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred EEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhC---CChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 467787 4889999999999999999999999999 999999999999999999999999999999999998776544
No 131
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.82 E-value=7.3e-09 Score=82.43 Aligned_cols=75 Identities=11% Similarity=0.172 Sum_probs=68.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccCC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~~ 79 (197)
|.|+|+ .+|+.+.+.|..++++..|++.++++.| ++...+||+|.|+.|.+++|..++++.++|+|.|++.....
T Consensus 58 InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqG---L~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 58 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG 132 (207)
T ss_dssp EEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTT---CCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred EEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhC---CCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 357776 4889999999999999999999999999 99999999999999999999999999999999999876543
No 132
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.80 E-value=3.6e-09 Score=73.14 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=57.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCee---c--CCCCcccccccCCCCeEEEE
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKV---L--KDETTLADNKVSEDGFLVVM 73 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~---L--~D~~tL~~~~I~~~~~I~l~ 73 (197)
|.|.||+.+| .+.|++++++||.+||++|.+..+ ++.+.|.|.++-.. | .++.+|+++||++|+.|+|.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~---i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFG---FQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTC---CCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcC---CCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 6788998887 788999999999999999999999 88888777654433 3 47789999999999999874
No 133
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.75 E-value=5.4e-09 Score=84.11 Aligned_cols=42 Identities=26% Similarity=0.429 Sum_probs=39.4
Q ss_pred CCCchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 149 AGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 149 ~g~~~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
.+.++++.|++|++|| |+|++|+.||+..++|+++|+|||++
T Consensus 159 ~~~~~eekV~~l~~MG---f~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 159 SSPEYTKKIENLCAMG---FDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp CCHHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 4567899999999999 99999999999999999999999985
No 134
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.73 E-value=9.2e-08 Score=65.25 Aligned_cols=70 Identities=14% Similarity=0.181 Sum_probs=64.5
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CeEEEeCCeecCCCCcccccccCCCCeEEEEe
Q 029207 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCG-QQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (197)
Q Consensus 2 ~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~-~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~ 74 (197)
.+.+++.....+.+.|..+.+|.+|-+..+...| ++.+ .++|.|.|..|+.+.++.+|++.+++.|.+++
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~---I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVK---ISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHT---CCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcC---CCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 3556777777899999999999999999999999 9999 99999999999999999999999999999885
No 135
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.68 E-value=1.8e-08 Score=74.57 Aligned_cols=40 Identities=35% Similarity=0.597 Sum_probs=37.1
Q ss_pred CchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 151 ~~~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
++..+.|++|++|| |+++.|++||++..||+++|+|||+.
T Consensus 6 ~~e~~~v~~l~~MG---Fp~~~~~kAl~~~g~~~e~amewL~~ 45 (118)
T 4ae4_A 6 PSERQCVETVVNMG---YSYECVLRAMKAAGANIEQILDYLFA 45 (118)
T ss_dssp HHHHHHHHHHHHTT---CCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC---CCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 34578999999999 99999999999999999999999985
No 136
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.65 E-value=3.8e-08 Score=62.65 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=37.7
Q ss_pred CchHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 151 NDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 151 ~~~~~~i~~l~~MG~~~~-~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
+.|...+++|.+|| | +++.-++||+...+|+++||++|+.
T Consensus 7 e~~a~~L~~L~eMG---F~D~~~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 7 GQTAALMAHLFEMG---FCDRQLNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp TTHHHHHHHHHHHT---CCCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 44778999999999 9 9999999999999999999999997
No 137
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.59 E-value=2.5e-07 Score=66.17 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=63.9
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 029207 1 MKLTVKTLKGS-HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (197)
Q Consensus 1 M~I~Vk~~~g~-~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~ 73 (197)
+.|+|+..+|+ .+.+.|..+.++..|....+++.| ++....||+|.|..|..+.|..++++.+++.|.|+
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g---~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMG---LSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTT---CSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35777777884 788999999999999999999999 88999999999999999999999999999999886
No 138
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.56 E-value=3.4e-08 Score=73.82 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CHHHHHHHhhC
Q 029207 154 EQTIQQIMDMGGGTWDKETVTRALQAAYN-NPERAVDYLYS 193 (197)
Q Consensus 154 ~~~i~~l~~MG~~~~~~~~~~~aL~~~~~-N~~~A~EyL~~ 193 (197)
++.|++|++|| |+++.|.+||++..| |+++|++||+.
T Consensus 4 ~~~l~~L~~MG---F~~~~a~~AL~~t~n~~~e~A~~wL~~ 41 (126)
T 2lbc_A 4 ESSVMQLAEMG---FPLEACRKAVYFTGNMGAEVAFNWIIV 41 (126)
T ss_dssp THHHHHHHTTS---SCCHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 57899999999 999999999999977 99999999987
No 139
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.56 E-value=7.8e-09 Score=83.31 Aligned_cols=74 Identities=11% Similarity=0.181 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~ 78 (197)
|.|+| ..+|+.+.+.|..++.+..|++.++++.| ++++.+|++|+|+.|.+++|.+++++++||+|.++.....
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqG---Ls~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~G 95 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (227)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhC---CCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccC
Confidence 56777 66888899999999999999999999999 9999999999999999999999999999999999976644
No 140
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.54 E-value=9.8e-08 Score=68.64 Aligned_cols=40 Identities=25% Similarity=0.519 Sum_probs=38.1
Q ss_pred CchHHHHHHHHHc-CCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 151 NDLEQTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 151 ~~~~~~i~~l~~M-G~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
+++++.|+.|++| | |++++|+.||..++|++++|++||+.
T Consensus 37 ~d~eekVk~L~EmtG---~seeeAr~AL~~~ngDl~~AI~~Lle 77 (104)
T 1wj7_A 37 ADFEEKVKQLIDITG---KNQDECVIALHDCNGDVNRAINVLLE 77 (104)
T ss_dssp HHHHHHHHHHHHHTC---CCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred ccHHHHHHHHHHhhC---CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3578999999999 9 99999999999999999999999998
No 141
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=98.46 E-value=1.4e-07 Score=73.91 Aligned_cols=41 Identities=24% Similarity=0.465 Sum_probs=38.5
Q ss_pred CCchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 150 g~~~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
.++.++.|++|++|| |+|+.|++||.++.+|.+.|++||++
T Consensus 127 tpee~eaI~rL~~mG---F~r~~viqA~~ac~knee~Aan~L~~ 167 (171)
T 2qsf_X 127 TPEDDQAISRLCELG---FERDLVIQVYFACDKNEEAAANILFS 167 (171)
T ss_dssp CHHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHTT
T ss_pred CccHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 455688999999999 99999999999999999999999997
No 142
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.45 E-value=2e-07 Score=58.78 Aligned_cols=38 Identities=29% Similarity=0.468 Sum_probs=35.3
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CHHHHHHHhhC
Q 029207 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYN-NPERAVDYLYS 193 (197)
Q Consensus 153 ~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~-N~~~A~EyL~~ 193 (197)
.-+++++|++|| |+++.|.+||+.+.| +++.|+|||.-
T Consensus 9 n~qmlq~L~eMG---Fd~erae~Alk~Tg~~Gle~AmewL~k 47 (54)
T 2cos_A 9 NRQMLQELVNAG---CDQEMAGRALKQTGSRSIEAALEYISK 47 (54)
T ss_dssp CHHHHHHHHHHH---CCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 457899999999 999999999999988 89999999975
No 143
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.41 E-value=1.8e-06 Score=61.11 Aligned_cols=72 Identities=13% Similarity=0.192 Sum_probs=66.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecc
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~ 76 (197)
+.|+|+ .+|..+.+.+..+.....|.+..+++.| +.+..+|++|.|..+.++.|-.++++.+++.|.+++.+
T Consensus 22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~g---v~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLG---VSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHT---SCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcC---CChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 357788 4788999999999999999999999999 99999999999999999999999999999999999754
No 144
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.40 E-value=5.8e-08 Score=84.82 Aligned_cols=43 Identities=21% Similarity=0.307 Sum_probs=39.9
Q ss_pred CchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC-cCC
Q 029207 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS-ISS 196 (197)
Q Consensus 151 ~~~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~-~~~ 196 (197)
++.++.|++|++|| |+|++|++||++..+|.++|++||++ +++
T Consensus 323 ~ee~eaI~rL~~mG---F~~~~a~~al~a~~~n~e~A~~~L~~~~~d 366 (368)
T 1oqy_A 323 PQEKEAIERLKALG---FPESLVIQAYFACEKNENLAANFLLSQNFD 366 (368)
T ss_dssp TTTHHHHHHHHHHT---CCSHHHHHHTSSSSSCSSHHHHHHHHHHCC
T ss_pred CcCHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhhCcCc
Confidence 56789999999999 99999999999999999999999998 543
No 145
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.34 E-value=3e-06 Score=60.07 Aligned_cols=69 Identities=16% Similarity=0.153 Sum_probs=52.7
Q ss_pred EEEEeC-CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeec--CCCCcccccccC-CCCeEEEEe
Q 029207 3 LTVKTL-KGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVL--KDETTLADNKVS-EDGFLVVML 74 (197)
Q Consensus 3 I~Vk~~-~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L--~D~~tL~~~~I~-~~~~I~l~~ 74 (197)
|+|=.+ .+..+.+.+.+++||..||++|++++| +++++|+|+|.||.| +..+....|--. ...-|.|+-
T Consensus 15 vHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTg---Ip~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 15 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTK---IISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp EEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHC---CCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred EEEEEcccceEEEEEeccchHHHHHHHHHHHHhC---CCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 444444 467788999999999999999999999 999999999999865 555666666443 334455443
No 146
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.29 E-value=2.3e-06 Score=69.13 Aligned_cols=74 Identities=11% Similarity=0.176 Sum_probs=67.3
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccCC
Q 029207 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (197)
Q Consensus 2 ~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~~ 79 (197)
.|+|+. +|+...+.|..++++..|++..+++.| ++.+++||+|.|+.+.++++..++.+.++++|.++..+...
T Consensus 23 ~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g---~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg 96 (209)
T 3uf8_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (209)
T ss_dssp EEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTC
T ss_pred EEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhC---CChheEEEEECCEeccCCCChHHhhhcccccchhhcccccc
Confidence 567776 677888999999999999999999999 99999999999999999999999999999999999766553
No 147
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.20 E-value=7.8e-06 Score=57.35 Aligned_cols=75 Identities=15% Similarity=0.157 Sum_probs=69.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccC
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~ 78 (197)
|.|+|...+++.+.+.|.++.++.++-+..++++| +.+++..|.|++|.|+-+..+.-.||-++..|.++.+.+.
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~g---l~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~s 84 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQD---FNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSRS 84 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTT---CCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSSC
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhC---CChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccCC
Confidence 67999999999999999999999999999999999 8899999999999999999999999999999999865443
No 148
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=98.18 E-value=1.4e-06 Score=72.48 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=39.4
Q ss_pred CCCchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 149 AGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 149 ~g~~~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
.++++++.|++|++|| |+|++|+.||+...+|.++|+|||++
T Consensus 211 ~~~~~~~~v~~l~~mg---f~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 211 SSPEYTKKIENLCAAG---FDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp CCHHHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 4567899999999999 99999999999999999999999984
No 149
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.09 E-value=4.1e-07 Score=78.92 Aligned_cols=72 Identities=11% Similarity=0.211 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecc
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~ 76 (197)
+.|+|+. +|+...+.|..++++..|++..+++.| ++.+.+|++|.|+.|.+++|.+++++++|++|.++...
T Consensus 22 I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G---~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q 93 (360)
T 3ix6_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (360)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhC---CCcceEEEEECCeECCCCCChHHcCCCccchhhhhhcc
Confidence 3567776 677888999999999999999999999 99999999999999999999999999999999999764
No 150
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=98.07 E-value=7.3e-06 Score=61.28 Aligned_cols=69 Identities=26% Similarity=0.237 Sum_probs=56.7
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-------------------------------------Ce
Q 029207 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCG-------------------------------------QQ 44 (197)
Q Consensus 2 ~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~-------------------------------------~q 44 (197)
.|+|+.++|...++.|+.+.+|.+++..|+.+.| +... .+
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kig---I~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~ 89 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIG---ITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQ 89 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHT---CCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhC---CCCcccccccccccccccccCchhhccccccccchhHHHHHHH
Confidence 3889999999999999999999999999999999 5432 34
Q ss_pred EEEe--CCeecCCCCcccccccCCCCeEEEE
Q 029207 45 LLIH--NGKVLKDETTLADNKVSEDGFLVVM 73 (197)
Q Consensus 45 rLi~--~Gk~L~D~~tL~~~~I~~~~~I~l~ 73 (197)
||-. .+..|+++++|.++||.++++|.|-
T Consensus 90 kL~~dd~~~WLD~srtL~EQGI~e~~tllLR 120 (128)
T 2kc2_A 90 KLHTDDELNWLDHGRTLREQGVEEHETLLLR 120 (128)
T ss_dssp SCCCSSSEEEECSSSCHHHHTCCTTSEEEEE
T ss_pred HhcccCCCCcccCCCcHHHcCCCCCCEEEEE
Confidence 4422 2367888999999999999997653
No 151
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=98.07 E-value=7.8e-06 Score=56.40 Aligned_cols=70 Identities=21% Similarity=0.292 Sum_probs=59.0
Q ss_pred EEEEEe--CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CCeEEEeCCeecCCCCcccccccCCCCeEEE
Q 029207 2 KLTVKT--LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC---GQQLLIHNGKVLKDETTLADNKVSEDGFLVV 72 (197)
Q Consensus 2 ~I~Vk~--~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~---~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l 72 (197)
.|+|.. ..++.|.|.+....||+.|++.+.+.++.. .+. -++|+.-+|.+|.+++.|.+|+|.+|+.|.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~-~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVS-MPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCC-SCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCC-cCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 466664 578999999999999999999999999833 221 2568888999999999999999999999976
No 152
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.88 E-value=1.7e-06 Score=75.67 Aligned_cols=74 Identities=9% Similarity=0.168 Sum_probs=0.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecccCC
Q 029207 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (197)
Q Consensus 2 ~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~~~~ 79 (197)
.|+|+. +|....+.|..++++..|++..+++.| ++..+++++|.|+.|.+++|.++++++++++|.++......
T Consensus 32 ~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g---~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg 105 (389)
T 4da1_A 32 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGG 105 (389)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEec-CCcEEEEEECCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccc
Confidence 456665 667778999999999999999999999 99999999999999999999999999999999999876543
No 153
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.80 E-value=0.0001 Score=50.78 Aligned_cols=68 Identities=21% Similarity=0.320 Sum_probs=57.7
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC---CCCcccccccCCCCeEEEE
Q 029207 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVLK---DETTLADNKVSEDGFLVVM 73 (197)
Q Consensus 2 ~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi--~~Gk~L~---D~~tL~~~~I~~~~~I~l~ 73 (197)
+|.||..+|+.+.-.+..++||.+|...|.. .+ .+....+|+ |-.|.|. .+++|.++|+.++.+|+|-
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~---~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KG---FPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TT---CCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cC---CCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 6889999999888889999999999999988 56 667888888 5578883 4689999999988888764
No 154
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.69 E-value=0.00054 Score=49.57 Aligned_cols=71 Identities=14% Similarity=0.244 Sum_probs=59.3
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC--C-CCcccccccCCCCeEEEEec
Q 029207 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVLK--D-ETTLADNKVSEDGFLVVMLS 75 (197)
Q Consensus 2 ~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi--~~Gk~L~--D-~~tL~~~~I~~~~~I~l~~~ 75 (197)
+|.||..+|+.+.-.+..++||.+|...|....+ .+.....|+ |-.|.|. | +++|.++|+.+...|+|...
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~---~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVG---NTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHT---TSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccC---CCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 6889999999999999999999999999999877 556777776 5678886 3 67999999998777766543
No 155
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=97.46 E-value=0.00014 Score=47.07 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=36.9
Q ss_pred chHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 152 DLEQTIQQIMDM--GGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 152 ~~~~~i~~l~~M--G~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
..|+.|++|.+| + ++++.+.++|++..||+|+|++.|+.
T Consensus 8 ~~ee~l~~L~emFP~---ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 8 CSEEDLKAIQDMFPN---MDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp SCHHHHHHHHHHCSS---SCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 358999999999 8 99999999999999999999999997
No 156
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=97.45 E-value=0.00019 Score=44.66 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=35.5
Q ss_pred hHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 153 LEQTIQQIMDM--GGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 153 ~~~~i~~l~~M--G~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
-++.|+.|.|| . -+++++.++|+++.||.|+|+.-|++
T Consensus 4 ~e~~v~~L~EMFP~---~~~~~ik~~L~~~~Gd~d~Ai~~LL~ 43 (49)
T 1otr_A 4 HESKLSILMDMFPA---ISKSKLQVHLLENNNDLDLTIGLLLK 43 (49)
T ss_dssp HHHHHHHHHHHCSS---SCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred hHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 37899999999 6 69999999999999999999999998
No 157
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.36 E-value=0.00067 Score=50.22 Aligned_cols=69 Identities=20% Similarity=0.336 Sum_probs=58.4
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeec--CC-CCcccccccCCCCeEEEEe
Q 029207 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVL--KD-ETTLADNKVSEDGFLVVML 74 (197)
Q Consensus 2 ~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi--~~Gk~L--~D-~~tL~~~~I~~~~~I~l~~ 74 (197)
+|.||..+|..+.-.+..++||.+|...|... + ++.....|+ |-.|.| .| +++|.++|+.+...|+|..
T Consensus 45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~---~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-G---YPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-H---CCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C---CCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 68899999999998999999999999999886 6 667778887 668888 34 6899999999888877653
No 158
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=97.31 E-value=0.00015 Score=69.58 Aligned_cols=40 Identities=35% Similarity=0.635 Sum_probs=37.4
Q ss_pred CchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 151 ~~~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
...++.|..|++|| |+++++++||++..||++||+|||++
T Consensus 718 ~~~~e~i~~l~~mG---f~~~~a~~aL~~t~~~~eraidwlfs 757 (854)
T 3ihp_A 718 PPPEDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFS 757 (854)
T ss_dssp -CCHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcC---CCHHHHHHHHHhhcCcHHHHHHhhhc
Confidence 44689999999999 99999999999999999999999998
No 159
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=97.17 E-value=0.00064 Score=44.61 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=33.5
Q ss_pred HHHHHHHHHc-CCCCCCHHHHHHHHHHhcCCHHHHHHHhh
Q 029207 154 EQTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLY 192 (197)
Q Consensus 154 ~~~i~~l~~M-G~~~~~~~~~~~aL~~~~~N~~~A~EyL~ 192 (197)
.+.|..|.++ | ....+|.+||..+.+|.+.|++||-
T Consensus 10 ~~~Vk~LRe~TG---ag~~dcKkAL~e~~GDi~~Ai~~Lr 46 (64)
T 2cp9_A 10 KELLMKLRRKTG---YSFVNCKKALETCGGDLKQAEIWLH 46 (64)
T ss_dssp CHHHHHHHHHHC---CCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3789999997 8 9999999999999999999999995
No 160
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.14 E-value=0.00073 Score=44.75 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=39.1
Q ss_pred CCCchHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 149 AGNDLEQTIQQIMDM--GGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 149 ~g~~~~~~i~~l~~M--G~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
.+.++++.+++|.+| . ++++.+...|++..+|+|+|++-||+
T Consensus 14 ~~~~~~~~v~~L~~MFP~---lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 14 RRLEFNQAMDDFKTMFPN---MDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp CCCCSHHHHHHHHHHCSS---SCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 466789999999999 6 89999999999999999999999987
No 161
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.02 E-value=0.0023 Score=46.12 Aligned_cols=68 Identities=19% Similarity=0.188 Sum_probs=56.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC--CCCcccccccCCCCeEEEE
Q 029207 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVLK--DETTLADNKVSEDGFLVVM 73 (197)
Q Consensus 2 ~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi--~~Gk~L~--D~~tL~~~~I~~~~~I~l~ 73 (197)
+|.||..+|+.+.-.+..++||.+|...|... + +.....+|+ |-.|.|. .+++|.++|+.+..+|+|.
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~---~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve 96 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-G---YHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE 96 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-T---CCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C---CCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEE
Confidence 68899999999888899999999999999965 4 456778886 5678885 3689999999987777664
No 162
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=96.95 E-value=0.00013 Score=59.21 Aligned_cols=39 Identities=28% Similarity=0.363 Sum_probs=0.0
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 152 ~~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
++++.|+++++|| |++++++.||+...+|.++|+|.|++
T Consensus 176 ~~~~~v~~~~~mg---f~~~~~~~al~~~~~~~~~~~~~l~~ 214 (216)
T 2pwq_A 176 PREVIIKKITEMG---FSEDQAKNALIKANWNETLALNTLLE 214 (216)
T ss_dssp ------------------------------------------
T ss_pred chhhHHHHHHHcC---CCHHHHHHHHHHcCCchHHHHHHHhc
Confidence 4589999999999 99999999999999999999999985
No 163
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=96.94 E-value=0.0032 Score=46.65 Aligned_cols=65 Identities=15% Similarity=0.248 Sum_probs=53.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecCC-CCcccccccCCCC
Q 029207 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVLKD-ETTLADNKVSEDG 68 (197)
Q Consensus 2 ~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi--~~Gk~L~D-~~tL~~~~I~~~~ 68 (197)
+|.||..+|..+.-.+..++||.+|...|...... +......|+ |-.|.|.| +++|.++|+.+..
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~--~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psa 121 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPA--MAATSFVLMTTFPNKELADENQTLKEANLLNAV 121 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSG--GGTSCEEEEETTTTEECCSTTCBHHHHTCSSCE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcC--CCCCCeEEecCCCCCCCCCCCCcHHHCCCcCce
Confidence 58899999999999999999999999999986321 445667776 56789965 6899999999743
No 164
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=96.09 E-value=0.025 Score=37.81 Aligned_cols=60 Identities=15% Similarity=0.215 Sum_probs=46.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~ 73 (197)
|+|+||........+++....||.+|-+. .| ++++..-+..+|+++..+. +.+||.|-++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lg---l~~~~VvV~vNG~~v~~d~------~l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VD---LSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TC---CCSSCCCEECCCCCCCTTS------SSCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cC---CCcceEEEEECCEECCHHH------CCCCCEEEEE
Confidence 89999977445566899999999988754 56 8888888889999886555 2347887765
No 165
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=96.06 E-value=0.0034 Score=39.08 Aligned_cols=39 Identities=28% Similarity=0.394 Sum_probs=33.7
Q ss_pred CchHHHHHHHHHcCCCCCCHHHH--HHHHHHhcCCHHHHHHHhh
Q 029207 151 NDLEQTIQQIMDMGGGTWDKETV--TRALQAAYNNPERAVDYLY 192 (197)
Q Consensus 151 ~~~~~~i~~l~~MG~~~~~~~~~--~~aL~~~~~N~~~A~EyL~ 192 (197)
+..++.|.+|++|| |+-+-- .+.|....+|..+|++-|-
T Consensus 8 ~rl~~al~qMl~MG---F~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 8 PRLIESLSQMLSMG---FSDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHHHHHTTT---CCCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred hHHHHHHHHHHHcC---CCccccHHHHHHHHccCCHHHHHHHhh
Confidence 34689999999999 987765 6999999999999999763
No 166
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.00 E-value=0.022 Score=37.91 Aligned_cols=43 Identities=19% Similarity=0.388 Sum_probs=39.0
Q ss_pred cCCCchHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 148 VAGNDLEQTIQQIMDM--GGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 148 ~~g~~~~~~i~~l~~M--G~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
..+.+.++.|.+|.++ - +....+.++|+...+|+|+.+..||.
T Consensus 8 ~~~~~l~s~I~qV~DLfPd---LG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 8 MCGVELDSLISQVKDLLPD---LGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp CSSHHHHHHHHHHHHHCCS---SCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHccc---CCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 3577889999999998 6 77999999999999999999999997
No 167
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.94 E-value=0.031 Score=38.51 Aligned_cols=70 Identities=19% Similarity=0.202 Sum_probs=57.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC---CeecCCCCcccccccCCCCeEEEEeccc
Q 029207 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN---GKVLKDETTLADNKVSEDGFLVVMLSKS 77 (197)
Q Consensus 2 ~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~---Gk~L~D~~tL~~~~I~~~~~I~l~~~~~ 77 (197)
++.|....-+++.+.|++..++.+|--.|+++.. +.++...|... +..|+-+++|.||||++ ++.+-.++
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kce---fdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d~~~ 84 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCE---FDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMDVNR 84 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTT---CCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEECCC
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhccc---CChhhEEEecCCCCCcccchhcchhhhhhhh---hheecccc
Confidence 5667766777888999999999999999999988 88999888754 45788899999999997 66654443
No 168
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=95.76 E-value=0.0066 Score=58.17 Aligned_cols=38 Identities=26% Similarity=0.426 Sum_probs=34.7
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CHHHHHHHhhC
Q 029207 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYN-NPERAVDYLYS 193 (197)
Q Consensus 153 ~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~-N~~~A~EyL~~ 193 (197)
.++.+++|++|| |++..+++||.+..| |.+.|++||+.
T Consensus 652 d~~~l~~L~~mG---f~~~~~~kal~~t~n~~~e~a~~wl~~ 690 (854)
T 3ihp_A 652 DESVIIQLVEMG---FPMDACRKAVYYTGNSGAEAAMNWVMS 690 (854)
T ss_dssp -CHHHHHHHHHT---CCHHHHHHHHHHTTSCCHHHHHHHHHH
T ss_pred CHHHHHHHHhcC---CCHHHHHHHHhhcCCCchHHHhHHHhh
Confidence 468999999999 999999999999977 59999999987
No 169
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.71 E-value=0.072 Score=38.49 Aligned_cols=64 Identities=23% Similarity=0.282 Sum_probs=45.6
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEeC----CeecCCC-------------CcccccccCC
Q 029207 10 GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYP------CGQQLLIHN----GKVLKDE-------------TTLADNKVSE 66 (197)
Q Consensus 10 g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p------~~~qrLi~~----Gk~L~D~-------------~tL~~~~I~~ 66 (197)
+..+.+.|-..+||.++|++|-+..-+. .| ++++.|-+. |++|.|. .||.+|+|.+
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~-~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 101 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRG-QPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD 101 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC----------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcC-CccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence 4557788888999999999998775332 32 356666652 4667552 3689999999
Q ss_pred CCeEEEEe
Q 029207 67 DGFLVVML 74 (197)
Q Consensus 67 ~~~I~l~~ 74 (197)
|.+|.++-
T Consensus 102 gatl~l~~ 109 (111)
T 4e71_A 102 GATLILSK 109 (111)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEe
Confidence 99998764
No 170
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=95.70 E-value=0.072 Score=43.13 Aligned_cols=62 Identities=16% Similarity=0.283 Sum_probs=51.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CeEEEe-C----CeecCC-CCcccccccCCCCeEEEEeccc
Q 029207 13 FEIRVQPSDTVMAVKKNIEDVQGKDNYPCG-QQLLIH-N----GKVLKD-ETTLADNKVSEDGFLVVMLSKS 77 (197)
Q Consensus 13 ~~iev~~~~TV~~LK~~I~~~~g~~~~p~~-~qrLi~-~----Gk~L~D-~~tL~~~~I~~~~~I~l~~~~~ 77 (197)
+++.++..+||.+|++.+...++ ++.+ ..||.. . ...|.| +.+|.+++|.++..|+|-++..
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~---i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~ 222 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFN---IPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNE 222 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTT---CCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCT
T ss_pred EEEEecccCcHHHHHHHHHHHhC---CCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecC
Confidence 45777999999999999999999 8887 689863 3 245665 5899999999999998887653
No 171
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=95.69 E-value=0.085 Score=34.56 Aligned_cols=60 Identities=20% Similarity=0.301 Sum_probs=44.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~ 73 (197)
|+|+|..-. ....+++....||.+|.+.+ + ++.....+..+|+++..+. -+++||.|.++
T Consensus 5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~---~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii 64 (70)
T 1ryj_A 5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----E---IPIETVVVKKNGQIVIDEE-----EIFDGDIIEVI 64 (70)
T ss_dssp EEEEEEETT-EEEEEEESSCCBHHHHHHHT----T---CCTTTEEEEETTEECCTTS-----BCCTTCEEEEE
T ss_pred EEEEEeCcc-CceeEECCCCCcHHHHHHHh----C---CCCCCEEEEECCEECCCcc-----cCCCCCEEEEE
Confidence 566666332 23566777778999999875 4 5667778889999997654 57889999876
No 172
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=95.51 E-value=0.048 Score=43.74 Aligned_cols=61 Identities=20% Similarity=0.301 Sum_probs=50.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CeEEE--e-CC--eecCC-CCcccccccCCCCeEEEEecc
Q 029207 13 FEIRVQPSDTVMAVKKNIEDVQGKDNYPCG-QQLLI--H-NG--KVLKD-ETTLADNKVSEDGFLVVMLSK 76 (197)
Q Consensus 13 ~~iev~~~~TV~~LK~~I~~~~g~~~~p~~-~qrLi--~-~G--k~L~D-~~tL~~~~I~~~~~I~l~~~~ 76 (197)
+++.++..+||.+|++.+...++ ++.+ +.||. | .+ ..|+| +.+|.+++|.++..|+|-++.
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~---i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFS---IPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTT---CCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred eEEEEcccchHHHHHHHHHHHhC---CCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 56788999999999999999999 8886 68885 3 33 35665 579999999999999988765
No 173
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=95.44 E-value=0.07 Score=39.97 Aligned_cols=65 Identities=23% Similarity=0.270 Sum_probs=46.9
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCe-ecCCC-------------CcccccccCC
Q 029207 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYP------CGQQLLIH----NGK-VLKDE-------------TTLADNKVSE 66 (197)
Q Consensus 11 ~~~~iev~~~~TV~~LK~~I~~~~g~~~~p------~~~qrLi~----~Gk-~L~D~-------------~tL~~~~I~~ 66 (197)
..+.+.|-..+||.++|++|-+...++ +| ++++-|-+ .|+ +|.|. .||..|+|.+
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~-~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKG-VPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTT-SCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcC-CccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 457788888999999999999887543 43 33455544 244 36553 2799999999
Q ss_pred CCeEEEEecc
Q 029207 67 DGFLVVMLSK 76 (197)
Q Consensus 67 ~~~I~l~~~~ 76 (197)
|.+|.++-+.
T Consensus 120 ga~l~l~~~~ 129 (138)
T 2r2o_A 120 GATVALVPCL 129 (138)
T ss_dssp TCEEEEEEC-
T ss_pred CCEEEEEECC
Confidence 9999987554
No 174
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=94.93 E-value=0.11 Score=44.53 Aligned_cols=71 Identities=14% Similarity=0.079 Sum_probs=55.5
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCC-CCCCCCeEEEe------CCeecCCCCcccccccCCCCeEEEE
Q 029207 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKD-NYPCGQQLLIH------NGKVLKDETTLADNKVSEDGFLVVM 73 (197)
Q Consensus 2 ~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~-~~p~~~qrLi~------~Gk~L~D~~tL~~~~I~~~~~I~l~ 73 (197)
.+.|... +.+.++.++++.||.++..+|.++.... ..+.++.-|.. +|+-|++.++|+.|++++++.|...
T Consensus 5 ~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 5 SLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp EEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence 3455544 6677899999999999999998887521 13567777776 4677998999999999999988765
No 175
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=94.80 E-value=0.013 Score=36.92 Aligned_cols=41 Identities=24% Similarity=0.303 Sum_probs=31.6
Q ss_pred CchHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCHHHHHHHhhCc
Q 029207 151 NDLEQTIQQIMDM--GGGTWDKETVTRALQAAYNNPERAVDYLYSI 194 (197)
Q Consensus 151 ~~~~~~i~~l~~M--G~~~~~~~~~~~aL~~~~~N~~~A~EyL~~~ 194 (197)
.+.++.|++|.+| . +|++-+...|++..+|.+.||+.||..
T Consensus 10 ~e~~~~~~~L~~MFP~---lD~evI~~Vl~a~~G~~~~~IdaLLqm 52 (54)
T 1p3q_Q 10 NERKDTLNTLQNMFPD---MDPSLIEDVCIAAASRIGPCVDALLSL 52 (54)
T ss_dssp HHHHHHHHHHHHHSTT---SCHHHHHHHHHHSCC--CGGGC-----
T ss_pred HHHHHHHHHHHHHccc---CCHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 3578999999999 6 899999999999999999999999873
No 176
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=94.69 E-value=0.26 Score=36.35 Aligned_cols=66 Identities=27% Similarity=0.326 Sum_probs=47.4
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe-CC---e-ecCCC-------------Cccccccc
Q 029207 9 KGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYP------CGQQLLIH-NG---K-VLKDE-------------TTLADNKV 64 (197)
Q Consensus 9 ~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p------~~~qrLi~-~G---k-~L~D~-------------~tL~~~~I 64 (197)
++..+.+.|-..+||.++|++|-+..-+. +| ++++.|-+ .| + +|.|. .||.+|+|
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~-~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V 93 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKN-VPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKI 93 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTT-SCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhcc-CCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCC
Confidence 34557788888999999999998776432 33 35666765 33 3 36542 36899999
Q ss_pred CCCCeEEEEec
Q 029207 65 SEDGFLVVMLS 75 (197)
Q Consensus 65 ~~~~~I~l~~~ 75 (197)
.+|.+|.++.+
T Consensus 94 ~dgatv~l~~~ 104 (127)
T 3h6n_A 94 PEGASLAMSLI 104 (127)
T ss_dssp CTTCEEEEEEC
T ss_pred CCCCEEEEEEc
Confidence 99999988754
No 177
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=94.67 E-value=0.32 Score=33.73 Aligned_cols=68 Identities=19% Similarity=0.275 Sum_probs=47.5
Q ss_pred CEEEEEeCC------C-cEEEEEeCCCCCHHHHHHHHHHHhCC--CCC------CCCCeEEEeCCeecCCCCcccccccC
Q 029207 1 MKLTVKTLK------G-SHFEIRVQPSDTVMAVKKNIEDVQGK--DNY------PCGQQLLIHNGKVLKDETTLADNKVS 65 (197)
Q Consensus 1 M~I~Vk~~~------g-~~~~iev~~~~TV~~LK~~I~~~~g~--~~~------p~~~qrLi~~Gk~L~D~~tL~~~~I~ 65 (197)
|+|+|+... | ....+++....||.+|.+.+...+.. ..+ ......+..+|+.... +.-++
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 678887664 4 46678887788999999999876420 000 0244567788887753 56788
Q ss_pred CCCeEEEE
Q 029207 66 EDGFLVVM 73 (197)
Q Consensus 66 ~~~~I~l~ 73 (197)
+||.|.++
T Consensus 85 dGDeV~i~ 92 (98)
T 1vjk_A 85 DGDVVGVF 92 (98)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 99998876
No 178
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=94.54 E-value=0.13 Score=33.82 Aligned_cols=65 Identities=8% Similarity=0.240 Sum_probs=44.9
Q ss_pred CEEEEEeCCC-cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 029207 1 MKLTVKTLKG-SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC--GQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (197)
Q Consensus 1 M~I~Vk~~~g-~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~--~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~ 73 (197)
|+|+|+.... +.-.+++ ...||.+|.+.+....+ +.. ....+..+|+.+.+ .+.-+++||.|.++
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~---l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEG---LKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLL 68 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTT---TTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEE
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcC---HHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEE
Confidence 8899987653 1134666 56799999999986543 221 45667778887543 24568889999886
No 179
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=94.42 E-value=0.03 Score=42.85 Aligned_cols=37 Identities=22% Similarity=0.227 Sum_probs=31.5
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHh
Q 029207 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYL 191 (197)
Q Consensus 153 ~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL 191 (197)
....+++|++.| .|+|++|..||+.+.+|+++|+--|
T Consensus 102 R~~K~~eL~s~G--~~~~~~~~~aL~~~~Gdv~~Al~eL 138 (162)
T 4dbg_B 102 RRRKVQELQSLG--FGPEEGSLQALFQHGGDVSRALTEL 138 (162)
T ss_dssp HHHHHHHHHHTT--CCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHhcC--CchHHHHHHHHHHcCCcHHHHHHHH
Confidence 445788899999 3499999999999999999998544
No 180
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=94.05 E-value=0.11 Score=31.07 Aligned_cols=37 Identities=14% Similarity=0.248 Sum_probs=32.6
Q ss_pred hHHHHHHHHHc-CCCCCCHHHHHHHHHHhcCCHHHHHHHhh
Q 029207 153 LEQTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLY 192 (197)
Q Consensus 153 ~~~~i~~l~~M-G~~~~~~~~~~~aL~~~~~N~~~A~EyL~ 192 (197)
.++.|++.+++ | -+++.++.-|..+.+|.++||.-.+
T Consensus 5 ~~~~i~~F~~iTg---~~~~~A~~~L~~~~wdle~Ai~~ff 42 (46)
T 1v92_A 5 RQDALREFVAVTG---AEEDRARFFLESAGWDLQIALASFY 42 (46)
T ss_dssp HHHHHHHHHHHTC---CCHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred HHHHHHHHHHHhC---cCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56789999998 6 6999999999999999999997544
No 181
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=93.59 E-value=0.27 Score=35.78 Aligned_cols=65 Identities=26% Similarity=0.421 Sum_probs=45.3
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe-CC---e-ecCCC-------------CcccccccCC
Q 029207 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYP------CGQQLLIH-NG---K-VLKDE-------------TTLADNKVSE 66 (197)
Q Consensus 11 ~~~~iev~~~~TV~~LK~~I~~~~g~~~~p------~~~qrLi~-~G---k-~L~D~-------------~tL~~~~I~~ 66 (197)
..+.+.|-..+||.++|++|-+..-+. .| ++++.|-+ .| + +|.|. .||.+|+|.+
T Consensus 27 ~~i~VkVLdCDTItQvKeKiLd~vyk~-~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 27 PEVPVKILNCDTITQVKEKILDAIFKN-VPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CceEeeeecCCchHHHHHHHHHHHhcC-CCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 346777878999999999998776432 33 34556654 33 3 35441 3689999999
Q ss_pred CCeEEEEecc
Q 029207 67 DGFLVVMLSK 76 (197)
Q Consensus 67 ~~~I~l~~~~ 76 (197)
|.+|.++-+.
T Consensus 106 gatl~l~~~~ 115 (117)
T 4e74_A 106 GSVVALVSKQ 115 (117)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999987543
No 182
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=93.58 E-value=0.072 Score=42.81 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhcCCH
Q 029207 154 EQTIQQIMDMGGGTWDKETVTRALQAAYNNP 184 (197)
Q Consensus 154 ~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~ 184 (197)
+..|+++++|| |+++.|+.||+-...+-
T Consensus 170 ~~~v~~~~~mg---~~~~~~~~al~~~~~~~ 197 (215)
T 1tte_A 170 HDLIDEFESQG---FEKDKIVEVLRRLGVKS 197 (215)
T ss_dssp HHHHHHHHHHT---CCHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCc
Confidence 68999999999 99999999998776544
No 183
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=93.40 E-value=0.2 Score=34.25 Aligned_cols=46 Identities=13% Similarity=0.080 Sum_probs=39.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGK 51 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk 51 (197)
|+|+|..- .++.|.|.++.+..+|..+|.++.+ ++.+..+|-|+..
T Consensus 6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~---l~~~~~~LsYk~~ 51 (83)
T 1oey_A 6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLE---LRLEHTKLSYRPR 51 (83)
T ss_dssp EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTT---CCGGGCCEEECCT
T ss_pred EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhC---CCcceeEEEeeCC
Confidence 34555543 6888999999999999999999999 8899999999863
No 184
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=93.40 E-value=0.29 Score=33.52 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=51.5
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecc
Q 029207 15 IRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (197)
Q Consensus 15 iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~ 76 (197)
-.++=..++..||..++.+.| +.-+...+...+..|+++++|.+-+++-...+.+.+--
T Consensus 7 qhmDI~epL~~Lk~LLe~Rl~---i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 7 QAIDINEPIGNLKKLLEPRLQ---CSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEESSSBGGGHHHHSHHHHC---SCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhccccCcHHHHHHHHHHHhc---CCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 345567789999999999999 88899999999999999999999999988888887654
No 185
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=93.37 E-value=0.12 Score=36.71 Aligned_cols=36 Identities=33% Similarity=0.408 Sum_probs=32.1
Q ss_pred HHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCHHHHHHHhh
Q 029207 154 EQTIQQIMD-MGGGTWDKETVTRALQAAYNNPERAVDYLY 192 (197)
Q Consensus 154 ~~~i~~l~~-MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~ 192 (197)
++.|.-+|+ +| -+|+++++||+.+.||+=.|+-||.
T Consensus 66 ~edi~lv~~q~~---vs~~~A~~aL~~~~gDiv~Ai~~Lt 102 (102)
T 1tr8_A 66 EDDIELVMNQTG---ASREDATRALQETGGDLAEAIMRLS 102 (102)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHC-
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHhC
Confidence 577888888 69 9999999999999999999998883
No 186
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.29 E-value=0.13 Score=33.16 Aligned_cols=39 Identities=31% Similarity=0.335 Sum_probs=33.7
Q ss_pred chHHHHHHHHHc-CCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 152 DLEQTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 152 ~~~~~i~~l~~M-G~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
..++.|++.+++ | -+++.++.-|.++.+|.++||...+.
T Consensus 14 ~~~e~i~qF~~iTg---~~~~~A~~~Le~~~WnLe~Av~~ff~ 53 (62)
T 2dal_A 14 ALKGLIQQFTTITG---ASESVGKHMLEACNNNLEMAVTMFLD 53 (62)
T ss_dssp HHHHHHHHHHHHTC---CCHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 347799999997 6 77999999999999999999976554
No 187
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=92.49 E-value=1.2 Score=30.00 Aligned_cols=58 Identities=10% Similarity=0.096 Sum_probs=41.1
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCC---CCC-----CCCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 029207 11 SHFEIRVQPSDTVMAVKKNIEDVQGKD---NYP-----CGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (197)
Q Consensus 11 ~~~~iev~~~~TV~~LK~~I~~~~g~~---~~p-----~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~ 73 (197)
....+++....||.+|.+.+...+..- .+. .....+..+|+.... +.-+++||.|.++
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~ 83 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALF 83 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEE
Confidence 567888887889999999998775310 000 023577788988764 4568889999887
No 188
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=92.26 E-value=0.21 Score=34.12 Aligned_cols=41 Identities=12% Similarity=0.209 Sum_probs=34.6
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 153 ~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
+..=+.+|-+.=|.+.++.+.+.|.-.+.+|++||++|+|+
T Consensus 34 L~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~ 74 (83)
T 1ufz_A 34 LYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLE 74 (83)
T ss_dssp HHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 34456677776668899999999999999999999999997
No 189
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=91.75 E-value=0.38 Score=30.90 Aligned_cols=28 Identities=7% Similarity=0.266 Sum_probs=24.5
Q ss_pred CCchHHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 029207 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180 (197)
Q Consensus 150 g~~~~~~i~~l~~MG~~~~~~~~~~~aL~~~ 180 (197)
+...++.+..|+.+| |.+.++.+|++..
T Consensus 14 ~~~~~ea~~AL~aLG---Y~~~ea~kav~~v 41 (62)
T 1ixs_A 14 SEAAEEAVMALAALG---FKEAQARAVVLDL 41 (62)
T ss_dssp CHHHHHHHHHHHHTT---CCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 334678999999999 9999999999876
No 190
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=91.14 E-value=1.3 Score=36.32 Aligned_cols=75 Identities=17% Similarity=0.161 Sum_probs=54.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe---CCe--ecCCCCcccccccCCCCeEEEEec
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH---NGK--VLKDETTLADNKVSEDGFLVVMLS 75 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~---~Gk--~L~D~~tL~~~~I~~~~~I~l~~~ 75 (197)
|.|.|..++| ++.+.++...|+.+|-+.|....|. ...+..-|.| +|. .|+.++.|.+.+++.+..+.+..+
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L--~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGL--REVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTC--CCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCC--CCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 4688888988 6789999999999999999999992 2233445554 342 477788888877666666666555
Q ss_pred ccC
Q 029207 76 KSK 78 (197)
Q Consensus 76 ~~~ 78 (197)
++=
T Consensus 79 ~kf 81 (294)
T 1ef1_A 79 AKF 81 (294)
T ss_dssp ESS
T ss_pred EEE
Confidence 543
No 191
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=90.95 E-value=0.4 Score=32.95 Aligned_cols=56 Identities=9% Similarity=0.232 Sum_probs=40.4
Q ss_pred CCCcEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 029207 8 LKGSHFEIRVQPS-DTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (197)
Q Consensus 8 ~~g~~~~iev~~~-~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~ 73 (197)
++|+. +++... .||.+|.+.+ + ++.....+..+|+++..+ ...+.-+++||.|-++
T Consensus 25 vNGe~--~el~~~~~Tv~dLL~~L----~---~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~ 81 (87)
T 1tyg_B 25 LNGKD--VKWKKDTGTIQDLLASY----Q---LENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIV 81 (87)
T ss_dssp ETTEE--ECCSSSCCBHHHHHHHT----T---CTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEE
T ss_pred ECCEE--EECCCCCCcHHHHHHHh----C---CCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEE
Confidence 35654 445565 7999998865 5 666777888999988532 3445568899999887
No 192
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=90.65 E-value=0.22 Score=38.12 Aligned_cols=28 Identities=21% Similarity=0.187 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHhcCCHHHHHHHhh
Q 029207 165 GGTWDKETVTRALQAAYNNPERAVDYLY 192 (197)
Q Consensus 165 ~~~~~~~~~~~aL~~~~~N~~~A~EyL~ 192 (197)
+|.++..++.+||+.+.+|.++||.+++
T Consensus 72 ~g~~s~~EAr~Aw~~~~Gd~~~Av~~ci 99 (162)
T 4dbg_B 72 LGAFSCQEARRAWLDRHGNLDEAVEECV 99 (162)
T ss_dssp GCCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHccCChHHHHHHHH
Confidence 7899999999999999999999998865
No 193
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=90.64 E-value=1 Score=30.66 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=44.2
Q ss_pred CEEEEEeCC------CcEEEEEeCCCCCHHHHHHHHHHHhCCC--CC-C-------CCCeEEEeCCeecCCCCccccccc
Q 029207 1 MKLTVKTLK------GSHFEIRVQPSDTVMAVKKNIEDVQGKD--NY-P-------CGQQLLIHNGKVLKDETTLADNKV 64 (197)
Q Consensus 1 M~I~Vk~~~------g~~~~iev~~~~TV~~LK~~I~~~~g~~--~~-p-------~~~qrLi~~Gk~L~D~~tL~~~~I 64 (197)
|+|+|+... |....++++ ..||.+|...+...+..- .+ . .....+..+|+...+..-+ +.-+
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~~-~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSAS-GDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEEC-CSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEecC-CCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCC
Confidence 788887543 433356653 579999999998875310 00 0 1135677788877543322 4568
Q ss_pred CCCCeEEEE
Q 029207 65 SEDGFLVVM 73 (197)
Q Consensus 65 ~~~~~I~l~ 73 (197)
++|+.|.++
T Consensus 79 ~~gDeV~i~ 87 (93)
T 3dwg_C 79 ADGDSVTIL 87 (93)
T ss_dssp CTTCEEEEE
T ss_pred CCCCEEEEE
Confidence 999999886
No 194
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=90.54 E-value=0.98 Score=33.17 Aligned_cols=61 Identities=25% Similarity=0.273 Sum_probs=41.1
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHh----CCCCCC----CCCeEEEe-CC---eecCC----------C----Cccccccc
Q 029207 11 SHFEIRVQPSDTVMAVKKNIEDVQ----GKDNYP----CGQQLLIH-NG---KVLKD----------E----TTLADNKV 64 (197)
Q Consensus 11 ~~~~iev~~~~TV~~LK~~I~~~~----g~~~~p----~~~qrLi~-~G---k~L~D----------~----~tL~~~~I 64 (197)
..+.+.|-..+||.++|++|-+.. | +| ++++.|-+ .| .+|.| . .||..|+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~---~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V 115 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNG---SPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEI 115 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHS---SCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTC
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCC---CcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCC
Confidence 457788888999999999987543 4 43 34455543 22 23322 1 26788999
Q ss_pred CCCCeEEEEe
Q 029207 65 SEDGFLVVML 74 (197)
Q Consensus 65 ~~~~~I~l~~ 74 (197)
.+|.+|-++.
T Consensus 116 ~Dgatlal~k 125 (126)
T 3kuz_A 116 SNGSTIKVFK 125 (126)
T ss_dssp CTTCEEEEEE
T ss_pred CCCCEEEEee
Confidence 9999998763
No 195
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.28 E-value=0.64 Score=30.21 Aligned_cols=36 Identities=25% Similarity=0.255 Sum_probs=32.8
Q ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 155 QTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 155 ~~i~~l~~M-G~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
+.|++.+++ | =+++.++.-|.++.+|.++||...+.
T Consensus 19 ~~i~qF~~iTg---~~~~~A~~~Le~~~WdLe~Al~~ff~ 55 (66)
T 2dzl_A 19 VMINQFVLAAG---CAADQAKQLLQAAHWQFETALSTFFQ 55 (66)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 789999998 7 79999999999999999999987765
No 196
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=89.99 E-value=1.4 Score=36.63 Aligned_cols=74 Identities=12% Similarity=0.034 Sum_probs=54.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCe--ecCCCCcccccccCCCCeEEEEecc
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH--NGK--VLKDETTLADNKVSEDGFLVVMLSK 76 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~--~Gk--~L~D~~tL~~~~I~~~~~I~l~~~~ 76 (197)
+.+.|..++| .+.+.++...|+.+|-+.|....|. ...+..-|.| +|. .|+.++.|.+.+++.+..+.+..++
T Consensus 23 ~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L--~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr~ 99 (314)
T 1h4r_A 23 FTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGL--RETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFLA 99 (314)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTC--CCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEEE
T ss_pred eEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCC--CCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEEE
Confidence 3577888898 7889999999999999999999992 2234445555 443 4788888988776666655555554
Q ss_pred c
Q 029207 77 S 77 (197)
Q Consensus 77 ~ 77 (197)
+
T Consensus 100 k 100 (314)
T 1h4r_A 100 K 100 (314)
T ss_dssp S
T ss_pred E
Confidence 3
No 197
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=89.93 E-value=1.1 Score=28.78 Aligned_cols=62 Identities=18% Similarity=0.088 Sum_probs=40.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEe
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~ 74 (197)
|.|+|...+|+. +++....|+.+|-..|....+ ....-...+|++.+-+ +-+++++.|-++-
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~-----~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG-----DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH-----HTEEEEEETTEECCTT-----CBCCSSSBEEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc-----cceEEEEECCEEeCCC-----cCcCCCCEEEEEE
Confidence 788998778876 455678899999888754332 1222334688876544 4455677777664
No 198
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=89.12 E-value=0.53 Score=33.89 Aligned_cols=69 Identities=10% Similarity=0.078 Sum_probs=41.6
Q ss_pred CEEEEEeCC------C--cEEEEEeCC---CCCHHHHHHHHHHHhCCCCCCCCCeEEEeC-Ce------ecCCCC---cc
Q 029207 1 MKLTVKTLK------G--SHFEIRVQP---SDTVMAVKKNIEDVQGKDNYPCGQQLLIHN-GK------VLKDET---TL 59 (197)
Q Consensus 1 M~I~Vk~~~------g--~~~~iev~~---~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~-Gk------~L~D~~---tL 59 (197)
|+|+|+... | +.+.+++.. ..||.+|...|.+.+. ..+.+|+.. |+ +|-++. .|
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~-----~~~~~lf~~~g~lr~~i~VlVN~~di~~l 86 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLL-----KERPELFIQGDSVRPGILVLINDADWELL 86 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTC-----CSCHHHHCCSSSCCSSEEEEESSSBHHHH
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHcc-----chhHhhCccCCcccCCeEEEECCeeeecc
Confidence 678887654 3 356788873 3699999999987752 223233211 21 232222 22
Q ss_pred --cccccCCCCeEEEEe
Q 029207 60 --ADNKVSEDGFLVVML 74 (197)
Q Consensus 60 --~~~~I~~~~~I~l~~ 74 (197)
.++-++++|.|.++-
T Consensus 87 ~gldt~L~dGDeV~iip 103 (114)
T 1wgk_A 87 GELDYQLQDQDSILFIS 103 (114)
T ss_dssp CTTTCBCCSSEEEEEEE
T ss_pred CCcCcCCCCCCEEEEeC
Confidence 346789999988763
No 199
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=88.77 E-value=1.7 Score=39.63 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=55.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC---C--eecCCCCcccccccCCCCeEEEEec
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN---G--KVLKDETTLADNKVSEDGFLVVMLS 75 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~---G--k~L~D~~tL~~~~I~~~~~I~l~~~ 75 (197)
|.|.|..++| ++.|.|+...|+.+|-..|+...|. ...+..-|.|. | ..|+.++.|.+.+++.+..+.+.++
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL--~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGL--REVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTC--CCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCC--CCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 4578888888 6789999999999999999999992 23445566553 2 3577788888887776666666665
Q ss_pred ccC
Q 029207 76 KSK 78 (197)
Q Consensus 76 ~~~ 78 (197)
++-
T Consensus 82 vkf 84 (575)
T 2i1j_A 82 AKF 84 (575)
T ss_dssp ESS
T ss_pred EEE
Confidence 543
No 200
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=88.61 E-value=2 Score=29.62 Aligned_cols=46 Identities=13% Similarity=0.193 Sum_probs=36.2
Q ss_pred EEEEe-CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CeEEEeCCe
Q 029207 3 LTVKT-LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCG-QQLLIHNGK 51 (197)
Q Consensus 3 I~Vk~-~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~-~qrLi~~Gk 51 (197)
|+||. .+|..+.+.++++.+..+|.++|.+.++ +..+ ...|-|...
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~---~~~~~~f~lky~DE 54 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCS---FDNEQLFTMKWIDE 54 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTT---CCSSCCEEEEECCS
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhC---CCCCCeEEEEEECC
Confidence 34443 5788899999999999999999999998 6544 467778754
No 201
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=88.14 E-value=1.8 Score=31.74 Aligned_cols=57 Identities=18% Similarity=0.310 Sum_probs=40.3
Q ss_pred EEEeCC----CCCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeec-----CC--CCcccccccCCCCeEEEEe
Q 029207 14 EIRVQP----SDTVMAVKKNIEDVQGKDNYPCGQQLLIH--NGKVL-----KD--ETTLADNKVSEDGFLVVML 74 (197)
Q Consensus 14 ~iev~~----~~TV~~LK~~I~~~~g~~~~p~~~qrLi~--~Gk~L-----~D--~~tL~~~~I~~~~~I~l~~ 74 (197)
.|.|+. ..|..+|-+.|..++| +. +.+.++- ..+.| +| +++|+++||++|++|.++-
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~g---y~-~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYS---YP-QDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHT---CC-SSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred EEEeCcccccccCHHHHHHHHHHhcC---CC-CcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 455553 4699999988988899 54 3555442 23443 33 4799999999999998874
No 202
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=88.13 E-value=2.5 Score=35.89 Aligned_cols=70 Identities=24% Similarity=0.232 Sum_probs=52.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---------eecCCCCcccccccCCCCeEEE
Q 029207 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG---------KVLKDETTLADNKVSEDGFLVV 72 (197)
Q Consensus 2 ~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~G---------k~L~D~~tL~~~~I~~~~~I~l 72 (197)
.+.|..++|....+.|+...|+.+|-..|+...|. ...+..-|.+.. .-|+.++.+.+.++.....+++
T Consensus 87 ~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L--~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~f 164 (371)
T 3ivf_A 87 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGI--TNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLL 164 (371)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTC--SCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEE
T ss_pred EEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCC--CCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEE
Confidence 57889999999999999999999999999999993 345556776642 2356667777766655555554
Q ss_pred E
Q 029207 73 M 73 (197)
Q Consensus 73 ~ 73 (197)
.
T Consensus 165 r 165 (371)
T 3ivf_A 165 R 165 (371)
T ss_dssp E
T ss_pred E
Confidence 3
No 203
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=87.99 E-value=2.2 Score=39.31 Aligned_cols=64 Identities=23% Similarity=0.280 Sum_probs=44.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe-C---Ce-ecCCC-------------CcccccccCCC
Q 029207 12 HFEIRVQPSDTVMAVKKNIEDVQGKDNYP------CGQQLLIH-N---GK-VLKDE-------------TTLADNKVSED 67 (197)
Q Consensus 12 ~~~iev~~~~TV~~LK~~I~~~~g~~~~p------~~~qrLi~-~---Gk-~L~D~-------------~tL~~~~I~~~ 67 (197)
.+.+.|-..+||.++|++|-+..-+. .| ++++.|-+ . |+ +|.|. .||.+|+|.+|
T Consensus 275 ~i~VkVLdCDTItQVKeKiLDavYk~-~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 275 GVPVKVLDCDTISQAKEKMLDQLYKG-VPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred ceeeEeeccCcHHHHHHHHHHHHHcC-CCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 46778888999999999998664322 33 34555554 2 33 46553 37999999999
Q ss_pred CeEEEEecc
Q 029207 68 GFLVVMLSK 76 (197)
Q Consensus 68 ~~I~l~~~~ 76 (197)
.+|.++-+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999876543
No 204
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=87.98 E-value=0.67 Score=29.63 Aligned_cols=60 Identities=13% Similarity=0.229 Sum_probs=41.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~ 73 (197)
|+|+| +|+.+ ++....||.+|.+.+ + ++.....+..+|+.+..+ ...+.-+++||.|.++
T Consensus 1 m~i~v---Ng~~~--~~~~~~tv~~ll~~l----~---~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 1 MQILF---NDQAM--QCAAGQTVHELLEQL----D---QRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLF 60 (66)
T ss_dssp CCEEE---SSCEE--CCCTTCCHHHHHHHH----T---CCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEE
T ss_pred CEEEE---CCEEE--EcCCCCcHHHHHHHc----C---CCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEE
Confidence 44444 46654 455678999998876 4 566777888999987532 2334467889988876
No 205
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=87.90 E-value=1.4 Score=29.32 Aligned_cols=39 Identities=26% Similarity=0.398 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 154 EQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 154 ~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
+-.+++|-|+- |+=|-.-...||+++.+|...||-+|..
T Consensus 25 q~lLnQLrEIT-GiqD~~~L~~ALkas~Gdl~~AV~~LT~ 63 (80)
T 1vdl_A 25 QTFLNQLREIT-GINDAQILQQALKDSNGNLELAVAFLTA 63 (80)
T ss_dssp HHHHHHHHHHS-CCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHh-CCCcHHHHHHHHHhccCCHHHHHHHHhc
Confidence 45889999995 5667777888999999999999999987
No 206
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=87.59 E-value=0.62 Score=31.19 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=43.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CCCeEEEeCCeecCCCCcccccccCCCCeEEEEe
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYP-CGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p-~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~ 74 (197)
|+|+| +|+.+.+......||.+|.+.+ + ++ ....-+.++|.++.. ....+.-+++||.|-++-
T Consensus 1 M~I~v---NGe~~e~~~~~~~Tl~~LL~~l----~---~~~~~~vAVavNg~iVpr-~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 1 MNLTV---NGKPSTVDGAESLNVTELLSAL----K---VAQAEYVTVELNGEVLER-EAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp CEEEE---TTEEEECSSCSCEEHHHHHHHH----T---CSCTTTCCEEETTEECCT-THHHHCEECSSBCEEECC
T ss_pred CEEEE---CCEEEEcCCCCCCcHHHHHHHc----C---CCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEe
Confidence 55554 4765544321567999987754 5 66 677788899999854 355666788999998764
No 207
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=87.54 E-value=0.88 Score=27.36 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=31.2
Q ss_pred chHHHHHHHHHc-CCCCCCH-HHHHHHHHHhcCCHHHHHH
Q 029207 152 DLEQTIQQIMDM-GGGTWDK-ETVTRALQAAYNNPERAVD 189 (197)
Q Consensus 152 ~~~~~i~~l~~M-G~~~~~~-~~~~~aL~~~~~N~~~A~E 189 (197)
+.++.|.+..++ | -+. ++|+.=|.++++|.+.||.
T Consensus 4 d~de~ia~F~~iTG---~~d~~~A~~~Lea~nWDLe~Av~ 40 (45)
T 3e21_A 4 DREMILADFQACTG---IENIDEAITLLEQNNWDLVAAIN 40 (45)
T ss_dssp CHHHHHHHHHHHHC---CCCHHHHHHHHHHTTTCHHHHHT
T ss_pred cHHHHHHHHHHHHC---CCCHHHHHHHHHHcCCcHHHHHH
Confidence 468999999999 7 764 9999999999999999984
No 208
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.46 E-value=1.1 Score=29.14 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=34.5
Q ss_pred CchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 151 ~~~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
.+.++.|++.+++-| +=+.+.|+.-|..+.+|.+.||...+.
T Consensus 16 ~~~~e~i~qF~~ITg-~~d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 16 QEQTEKLLQFQDLTG-IESMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp HHHHHHHHHHHHHHC-CSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 446789999999853 237889999999999999999976554
No 209
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=87.15 E-value=2.5 Score=29.75 Aligned_cols=71 Identities=17% Similarity=0.121 Sum_probs=49.3
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--e----CCeecCCCCccccc----ccCCCCeEEE
Q 029207 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--H----NGKVLKDETTLADN----KVSEDGFLVV 72 (197)
Q Consensus 3 I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi--~----~Gk~L~D~~tL~~~----~I~~~~~I~l 72 (197)
|+|-..+|....|.|+..+|+.++-+++..+.+.. .....-|+ + --+.|+|+..|-+. .+..+..+++
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~--~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F 89 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHAL--SDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVF 89 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCC--CCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCC--CCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEE
Confidence 55666799999999999999999999999998732 22222332 1 23678998765544 4555666666
Q ss_pred Eec
Q 029207 73 MLS 75 (197)
Q Consensus 73 ~~~ 75 (197)
..+
T Consensus 90 ~kr 92 (100)
T 1wgr_A 90 RKN 92 (100)
T ss_dssp CSC
T ss_pred ecc
Confidence 443
No 210
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=86.69 E-value=3.7 Score=37.73 Aligned_cols=65 Identities=20% Similarity=0.369 Sum_probs=45.4
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe-C---Ce-ecCCC-------------CcccccccCC
Q 029207 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYP------CGQQLLIH-N---GK-VLKDE-------------TTLADNKVSE 66 (197)
Q Consensus 11 ~~~~iev~~~~TV~~LK~~I~~~~g~~~~p------~~~qrLi~-~---Gk-~L~D~-------------~tL~~~~I~~ 66 (197)
..+.+.|-..+||.++|++|-+..-+. .| ++++-|-+ . |+ +|.|. .||.+|+|.+
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~-~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKG-IPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcC-CCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 457788888999999999998775322 32 44555644 2 33 35442 3689999999
Q ss_pred CCeEEEEecc
Q 029207 67 DGFLVVMLSK 76 (197)
Q Consensus 67 ~~~I~l~~~~ 76 (197)
|.+|.++-+.
T Consensus 326 ga~v~L~p~~ 335 (627)
T 3ig3_A 326 GSLVALVPKQ 335 (627)
T ss_dssp TCEEEEEEC-
T ss_pred CceEEEEecc
Confidence 9999987544
No 211
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=86.50 E-value=0.78 Score=30.26 Aligned_cols=60 Identities=18% Similarity=0.239 Sum_probs=43.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEe
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~ 74 (197)
|+|+| +|+.+.+ ...||.+|.+. .+ +++...-+.++|.++.. ....+.-+++||.|-++-
T Consensus 1 M~I~v---NG~~~e~---~~~Tl~~LL~~----l~---~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 1 MLVTI---NGEQREV---QSASVAALMTE----LD---CTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILT 60 (73)
T ss_dssp CCEEE---TTEEECC---CCSBHHHHHHH----TT---CCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEEC
T ss_pred CEEEE---CCEEEEc---CCCcHHHHHHH----cC---CCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEc
Confidence 55544 4765554 56899998764 46 77888888999998843 345566788999998874
No 212
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=86.47 E-value=3.2 Score=34.25 Aligned_cols=70 Identities=10% Similarity=-0.058 Sum_probs=49.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC---C--eecCCCCcccccccCCCCeEEE
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN---G--KVLKDETTLADNKVSEDGFLVV 72 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~---G--k~L~D~~tL~~~~I~~~~~I~l 72 (197)
|.+.|..++|....++|+...|+.+|-..|....|. ...+..-|.|. | ..|+.++.|.+......-.+++
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L--~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~f 92 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNL--LEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTF 92 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTC--SSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEE
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCC--CCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEE
Confidence 568899999999999999999999999999999993 23344556543 3 3477777777764332233443
No 213
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=86.19 E-value=3.8 Score=28.24 Aligned_cols=69 Identities=12% Similarity=0.183 Sum_probs=42.0
Q ss_pred CEEEEEeCC------C-cEEEEEeCCCCCHHHHHHHHHHHhCC--CCC-CC----CCe-------EEEeCCeecCCCCcc
Q 029207 1 MKLTVKTLK------G-SHFEIRVQPSDTVMAVKKNIEDVQGK--DNY-PC----GQQ-------LLIHNGKVLKDETTL 59 (197)
Q Consensus 1 M~I~Vk~~~------g-~~~~iev~~~~TV~~LK~~I~~~~g~--~~~-p~----~~q-------rLi~~Gk~L~D~~tL 59 (197)
|+|+|+... | +.++++ ..||.+|.+.+...+.. ..+ .. ... .+..+|+...... -
T Consensus 4 m~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~ 79 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-G 79 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-S
T ss_pred eEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-C
Confidence 678888664 3 344444 57999999999877420 001 00 123 5677887663221 1
Q ss_pred cccccCCCCeEEEE
Q 029207 60 ADNKVSEDGFLVVM 73 (197)
Q Consensus 60 ~~~~I~~~~~I~l~ 73 (197)
.+.-+++||.|.++
T Consensus 80 ~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 80 LETLLKDSDEIGIL 93 (99)
T ss_dssp TTSCCCTTEEEEEE
T ss_pred CCCCCCCCCEEEEE
Confidence 24468889998876
No 214
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=86.06 E-value=2 Score=29.36 Aligned_cols=44 Identities=14% Similarity=0.079 Sum_probs=33.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE-eCCe
Q 029207 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI-HNGK 51 (197)
Q Consensus 2 ~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi-~~Gk 51 (197)
+|+|- .++..|-|-|..+.+..+||.+|..+.. + +.+.|+ |++.
T Consensus 14 KVK~y-y~DDIiAIrvP~di~~~~L~dKi~~RLk---~--~~~~l~~ykde 58 (85)
T 1ip9_A 14 KIKFY-YKDDIFALMLKGDTTYKELRSKIAPRID---T--DNFKLQTKLFD 58 (85)
T ss_dssp EEEEC-BTTCCEEEEECSCCCHHHHHHHHHHHHT---S--SCEEEEECCSS
T ss_pred EEEEE-ecCcEEEEECCCCCCHHHHHHHHHHHhc---c--cceEEEEecCC
Confidence 44443 3677999999999999999999999988 4 455554 4543
No 215
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=86.04 E-value=2.2 Score=26.03 Aligned_cols=37 Identities=30% Similarity=0.300 Sum_probs=33.0
Q ss_pred HHHHHHHHH--cCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 154 EQTIQQIMD--MGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 154 ~~~i~~l~~--MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
|+.|.+... -| -+|+-+++-|+-.+-|++.||.-|++
T Consensus 10 e~li~q~q~VLqg---ksR~vIirELqrTnLdVN~AvNNlLs 48 (53)
T 2qho_B 10 EELISQAQVVLQG---KSRSVIIRELQRTNLDVNLAVNNLLS 48 (53)
T ss_dssp HHHHHHHHHHSTT---CCHHHHHHHHHHTTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC---CcHHHHHHHHHHhCccHHHHHHHHhc
Confidence 677777665 49 99999999999999999999999998
No 216
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=85.60 E-value=0.28 Score=35.18 Aligned_cols=68 Identities=9% Similarity=0.098 Sum_probs=40.9
Q ss_pred CEEEEEeCC------CcEEEEEeCC----CCCHHHHHHHHHHHhCCCCCCCCCeEEE-eCC--e------ecCCCCcc--
Q 029207 1 MKLTVKTLK------GSHFEIRVQP----SDTVMAVKKNIEDVQGKDNYPCGQQLLI-HNG--K------VLKDETTL-- 59 (197)
Q Consensus 1 M~I~Vk~~~------g~~~~iev~~----~~TV~~LK~~I~~~~g~~~~p~~~qrLi-~~G--k------~L~D~~tL-- 59 (197)
|+|+|+... |+...+++.. ..||.+|-..|.+.+. ..+-+|+ -+| + +|-++..+
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~-----~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~ 79 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV-----KERPDLLVDQTGQTLRPGILVLVNSCDAEV 79 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC-----CSCHHHHBCSSSSSBCTTEEEEESSSBHHH
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc-----ccchhhEecCCCcccCCCeEEEECCeeeec
Confidence 567777554 3555677763 2499999988887753 2233332 123 1 34344333
Q ss_pred ---cccccCCCCeEEEE
Q 029207 60 ---ADNKVSEDGFLVVM 73 (197)
Q Consensus 60 ---~~~~I~~~~~I~l~ 73 (197)
.+|-+++||.|.++
T Consensus 80 l~gldt~L~dgD~V~fi 96 (110)
T 2k9x_A 80 VGGMDYVLNDGDTVEFI 96 (110)
T ss_dssp HTSSCCCCCSSCEEEEE
T ss_pred cCCcccCCCCcCEEEEe
Confidence 34679999998775
No 217
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=85.52 E-value=1 Score=33.20 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=30.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC
Q 029207 13 FEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN 49 (197)
Q Consensus 13 ~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~ 49 (197)
..+.|-.+.|+.+||..|++..| +++++|||.+-
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg---~~~~~~RlW~~ 91 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMG---FPQDQIRLWPM 91 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHC---CCGGGCEEEEC
T ss_pred ceEEEeccCcHHHHHHHHHHHhC---CCcccEEEEEe
Confidence 35678889999999999999999 99999999743
No 218
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=84.74 E-value=7 Score=26.77 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=25.5
Q ss_pred CEEEEEeCC-------C-cEEEEEeC--CCCCHHHHHHHHHHHhC
Q 029207 1 MKLTVKTLK-------G-SHFEIRVQ--PSDTVMAVKKNIEDVQG 35 (197)
Q Consensus 1 M~I~Vk~~~-------g-~~~~iev~--~~~TV~~LK~~I~~~~g 35 (197)
|+|+|+... | +..++++. ...||.+|...+.+.+.
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~ 46 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMI 46 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTC
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCc
Confidence 567776542 2 45667776 67899999999998864
No 219
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=84.56 E-value=2.1 Score=27.78 Aligned_cols=54 Identities=7% Similarity=0.126 Sum_probs=39.5
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCe--EEEeCCeecCCCCcccccccCCCCeEEEE
Q 029207 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQ--LLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (197)
Q Consensus 11 ~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~q--rLi~~Gk~L~D~~tL~~~~I~~~~~I~l~ 73 (197)
+...+++....||.+|.+.+...+.. .... .+..+|+....+ .-+++||.|.++
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~----~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ 71 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ----INNKKFQVAVNEEFVQKS-----DFIQPNDTVALI 71 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG----GTTCCCEEEETTEEECTT-----SEECTTCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc----hhcceEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 35667777778999999998876431 1233 788899988653 568889998876
No 220
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=83.77 E-value=2.1 Score=27.05 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=40.0
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEe
Q 029207 8 LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (197)
Q Consensus 8 ~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~ 74 (197)
++|+.+. + ...||.+|.+.+ + ++.....+..+|+++..+ ...+.-+++||.|.++-
T Consensus 4 vNg~~~~--~-~~~tv~~ll~~l----~---~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 4 LNGEPRP--L-EGKTLKEVLEEM----G---VELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp ETTEEEC--C-TTCCHHHHHHHH----T---BCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEE
T ss_pred ECCEEEE--c-CCCcHHHHHHHc----C---CCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEe
Confidence 4676654 4 568999998876 4 556777888999988532 33445688999998873
No 221
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=81.06 E-value=2.2 Score=26.83 Aligned_cols=38 Identities=13% Similarity=0.244 Sum_probs=29.0
Q ss_pred cccCCCchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHh
Q 029207 146 NLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYL 191 (197)
Q Consensus 146 ~l~~g~~~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL 191 (197)
.++.+..+.+.+.+ |+|+-+.+||+.+.+|..+|.+.|
T Consensus 5 ~~~~~~~l~~~l~~--------~E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 5 YLLKIKELKEAKKE--------FEKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp TTTTCSCHHHHHHH--------HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HhccCCCHHHHHHH--------HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 34445555555443 678999999999999999999876
No 222
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=80.82 E-value=11 Score=25.64 Aligned_cols=72 Identities=18% Similarity=0.188 Sum_probs=45.3
Q ss_pred CEEEEEeCCCcEEEEEe-CCCCCHHHHHHHHHHHhCCC-CCCCCC-e---EEEe-CCeecCCCCcccccccCCCCeEEEE
Q 029207 1 MKLTVKTLKGSHFEIRV-QPSDTVMAVKKNIEDVQGKD-NYPCGQ-Q---LLIH-NGKVLKDETTLADNKVSEDGFLVVM 73 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev-~~~~TV~~LK~~I~~~~g~~-~~p~~~-q---rLi~-~Gk~L~D~~tL~~~~I~~~~~I~l~ 73 (197)
|+|+|+. .+..+.+-+ +...||..|-++--..+-+. ...++. . +|-+ .|-+|+.+..|.+. +.++++|.-+
T Consensus 3 MKvtV~f-g~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dV-ldD~e~i~A~ 80 (85)
T 2ns5_A 3 FKVTVCF-GRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDV-ADDKDRLVAV 80 (85)
T ss_dssp EEEEEEE-TTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHH-SCTTEEEEEE
T ss_pred cEEEEEE-CCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhh-ccCcceEEEE
Confidence 8999995 466677776 45569999977644443210 021222 2 2234 67899888888886 5677777655
Q ss_pred e
Q 029207 74 L 74 (197)
Q Consensus 74 ~ 74 (197)
.
T Consensus 81 ~ 81 (85)
T 2ns5_A 81 F 81 (85)
T ss_dssp E
T ss_pred e
Confidence 3
No 223
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=80.16 E-value=2.5 Score=29.54 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=40.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-----------CeEEEeCC-eecCC------CCcccccccCCCCeEEEE
Q 029207 12 HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCG-----------QQLLIHNG-KVLKD------ETTLADNKVSEDGFLVVM 73 (197)
Q Consensus 12 ~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~-----------~qrLi~~G-k~L~D------~~tL~~~~I~~~~~I~l~ 73 (197)
...|+|++++|+.+|-+.|.+.-. +... ...|+..+ ..|+. +++|.++|+.+|+.|+|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~---~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSAS---LQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTT---CCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChH---hhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 346899999999999999998433 2122 23333333 22322 467999999999998873
No 224
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=78.15 E-value=9.7 Score=31.98 Aligned_cols=53 Identities=11% Similarity=0.094 Sum_probs=41.7
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC-eec-CCCCcccccccC
Q 029207 10 GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG-KVL-KDETTLADNKVS 65 (197)
Q Consensus 10 g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~G-k~L-~D~~tL~~~~I~ 65 (197)
-....+.+.+..|+.+|+++|+..++ ++++.|.|+|.+ +.. +-......|.-.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~t~---i~~~~q~~l~~~~~~~~~~~~~~~~~~~~ 375 (396)
T 4eut_A 321 MTAHKIYIHSYNTATIFHELVYKQTK---IISSNQELIYEGRRLVLEPGRLAQHFPKT 375 (396)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHC---CCSTTEEEESSSSEECCCSSCBTTSSCCC
T ss_pred ceEEEEEcCchhHHHHHHHHHHHhcC---CChhhhHHHhcCCCCCCCCCCccccCCCC
Confidence 34556788899999999999999999 999999999998 444 334555666443
No 225
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=79.45 E-value=0.44 Score=34.84 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=31.9
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 155 QTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 155 ~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
-.+++|-|+- |+=|-+....||+|+++|...||.+|..
T Consensus 20 ~lLNQLrEIT-GIqD~~~L~~ALkAsnGdl~qAV~~LT~ 57 (129)
T 2lva_A 20 MLLNQLREIT-GIQDPSFLHEALKASNGDITQAVSLLTD 57 (129)
Confidence 4788999984 4556777788999999999999999976
No 226
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=74.13 E-value=15 Score=23.67 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=37.4
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCC--CCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 029207 11 SHFEIRVQPSDTVMAVKKNIEDVQGK--DNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (197)
Q Consensus 11 ~~~~iev~~~~TV~~LK~~I~~~~g~--~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~ 73 (197)
..+.++ ....||.+|.+.+...+.. ..+......+..+|+.... +.-+++|+.|.++
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFF 75 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEE
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEe
Confidence 345565 5667999999998754210 0011234578889988753 4468889999886
No 227
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=72.72 E-value=22 Score=24.91 Aligned_cols=72 Identities=19% Similarity=0.169 Sum_probs=54.2
Q ss_pred EEEEEeCCC---cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe---ecCCCCcccccccCCCCeEEEEe
Q 029207 2 KLTVKTLKG---SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGK---VLKDETTLADNKVSEDGFLVVML 74 (197)
Q Consensus 2 ~I~Vk~~~g---~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk---~L~D~~tL~~~~I~~~~~I~l~~ 74 (197)
+|+|...+. ..+++.|..+.-|+.|.-+|-++.... -...+.-|-.--| .|+-..+|..|||+-+..+++.-
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~-~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIA-QDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCS-SCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccc-cchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 577887554 568899999999999999988776511 3355666665443 46778899999999999998764
No 228
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=71.99 E-value=16 Score=23.94 Aligned_cols=58 Identities=10% Similarity=0.190 Sum_probs=36.8
Q ss_pred EEeCCCCCHHHHHHHHHHHhCC--C--CCC----CCCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 029207 15 IRVQPSDTVMAVKKNIEDVQGK--D--NYP----CGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (197)
Q Consensus 15 iev~~~~TV~~LK~~I~~~~g~--~--~~p----~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~ 73 (197)
++++...||.+|.+.+...+.. . .+. .....+..+|+...... -.+.-+++|+.|.++
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLF 84 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEe
Confidence 4555568999999999876320 0 000 13456778888775321 234468899998876
No 229
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=71.22 E-value=1.7 Score=28.61 Aligned_cols=48 Identities=23% Similarity=0.442 Sum_probs=34.8
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 029207 14 EIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (197)
Q Consensus 14 ~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~ 73 (197)
.+++....||.+|.+.+ + ++.....+..+|+.+..+ .-+++||.|-++
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~---~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ 71 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----G---FNTESAIAKVNGKVVLED-----DEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----T---CSSCSSCEEETTEEECSS-----SCCCSSCCCBCS
T ss_pred EEECCCCCcHHHHHHHh----C---CCCcCEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 45566678999998764 4 556677888999988654 457778877654
No 230
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=70.81 E-value=21 Score=24.05 Aligned_cols=61 Identities=11% Similarity=0.113 Sum_probs=48.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHHh-CCCCC---CCCCeEEEeCC--eecCCCCcccccccCCCCeEEEEe
Q 029207 13 FEIRVQPSDTVMAVKKNIEDVQ-GKDNY---PCGQQLLIHNG--KVLKDETTLADNKVSEDGFLVVML 74 (197)
Q Consensus 13 ~~iev~~~~TV~~LK~~I~~~~-g~~~~---p~~~qrLi~~G--k~L~D~~tL~~~~I~~~~~I~l~~ 74 (197)
.-+.|+.++|+.++-++++... |.. + |..-.+..++| +.|..+.++++-||+.-+.|-+..
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrR-V~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRR-VHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTT-BCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhccee-cCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 3468999999999999988654 432 2 22246778999 899999999999999999888765
No 231
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=70.71 E-value=5.7 Score=36.89 Aligned_cols=51 Identities=18% Similarity=0.277 Sum_probs=41.4
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe-ecCCCCccccc
Q 029207 9 KGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGK-VLKDETTLADN 62 (197)
Q Consensus 9 ~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk-~L~D~~tL~~~ 62 (197)
..+.+.+.+.++.|+.+|+..|++.+| ++.+.|.|++.+. .++.......|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~---i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTG---IPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSC---CCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhC---CCHHHHHHHhccCCCCCCCcchhhh
Confidence 345567888899999999999999999 9999999998764 45556566665
No 232
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=67.16 E-value=24 Score=23.24 Aligned_cols=62 Identities=21% Similarity=0.231 Sum_probs=42.3
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEec
Q 029207 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLS 75 (197)
Q Consensus 2 ~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~ 75 (197)
.|+|.+.+|+.+.+ ....|+.|+=..|....+. .-.--..+|+...- ++-+++|+.|-++..
T Consensus 7 ~i~v~tP~G~~~~l--p~GaT~~D~A~~Ih~~lg~-----~~v~AkVNG~~v~L-----~~~L~~gd~VeIit~ 68 (78)
T 3hvz_A 7 EVFVFTPKGDVISL--PIGSTVIDFAYAIHSAVGN-----RMIGAKVDGRIVPI-----DYKVKTGEIIDVLTT 68 (78)
T ss_dssp EEEEECTTSCEEEE--ETTCBHHHHHHHHCHHHHH-----TEEEEEETTEEECT-----TCBCCTTCBEEEEEC
T ss_pred eEEEECCCCCEEEe--cCCCCHHHHHHHhhhhhhc-----ceEEEEECCEEcCC-----CcccCCCCEEEEEcc
Confidence 47888889977654 4778999998888776651 22233457876643 345678888887653
No 233
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=66.88 E-value=8.9 Score=30.13 Aligned_cols=25 Identities=8% Similarity=0.416 Sum_probs=23.3
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 029207 153 LEQTIQQIMDMGGGTWDKETVTRALQAA 180 (197)
Q Consensus 153 ~~~~i~~l~~MG~~~~~~~~~~~aL~~~ 180 (197)
.++.+..|+.+| |.+.++.+|++..
T Consensus 160 ~~ea~~AL~~LG---y~~~ea~~av~~~ 184 (203)
T 1cuk_A 160 EQEAVARLVALG---YKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHHT---CCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHh
Confidence 478999999999 9999999999987
No 234
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=66.38 E-value=23 Score=25.86 Aligned_cols=58 Identities=21% Similarity=0.291 Sum_probs=41.7
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE-eCCeec-CCCCccccc--ccC-CCCeEEEEec
Q 029207 15 IRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI-HNGKVL-KDETTLADN--KVS-EDGFLVVMLS 75 (197)
Q Consensus 15 iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi-~~Gk~L-~D~~tL~~~--~I~-~~~~I~l~~~ 75 (197)
+-|..+.||.+|...|....+ +.+++--.+ |.++.+ .-+.+++++ .-+ ++++|+|...
T Consensus 57 flVp~~~tv~qf~~~iRkrL~---l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys 119 (130)
T 2zjd_A 57 FLVPDHVNMSELIKIIRRRLQ---LNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYA 119 (130)
T ss_dssp EEEETTCBHHHHHHHHHHHHT---CCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHhC---CCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEEe
Confidence 346688999999999999998 767665555 766655 556677776 222 4678888754
No 235
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=66.06 E-value=3.4 Score=27.78 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHhcCCHHHHHHHh
Q 029207 168 WDKETVTRALQAAYNNPERAVDYL 191 (197)
Q Consensus 168 ~~~~~~~~aL~~~~~N~~~A~EyL 191 (197)
|+|+-+.+||+.+.+|..+|.+.|
T Consensus 41 ~Er~~I~~aL~~~~GN~s~AA~~L 64 (81)
T 1umq_A 41 VRWEHIQRIYEMCDRNVSETARRL 64 (81)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh
Confidence 678888899999999999998876
No 236
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=66.03 E-value=27 Score=23.60 Aligned_cols=61 Identities=11% Similarity=0.135 Sum_probs=48.5
Q ss_pred EEEeCCCCCHHHHHHHHHHHh-CCCC-CCCCCeEEEeCCee--cCCCCcccccccCCCCeEEEEe
Q 029207 14 EIRVQPSDTVMAVKKNIEDVQ-GKDN-YPCGQQLLIHNGKV--LKDETTLADNKVSEDGFLVVML 74 (197)
Q Consensus 14 ~iev~~~~TV~~LK~~I~~~~-g~~~-~p~~~qrLi~~Gk~--L~D~~tL~~~~I~~~~~I~l~~ 74 (197)
-+.|+..+|+.++-++++... |... -.+.-.|+.++|.. |.++.++++-||+.-+.|-++.
T Consensus 18 Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 18 LVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 468899999999999988654 4320 12336788899987 9999999999999999988764
No 237
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=65.63 E-value=32 Score=24.15 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=48.9
Q ss_pred EEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE---eCCe--ecCCCCcccccccCCCCeEEEEecc
Q 029207 4 TVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI---HNGK--VLKDETTLADNKVSEDGFLVVMLSK 76 (197)
Q Consensus 4 ~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi---~~Gk--~L~D~~tL~~~~I~~~~~I~l~~~~ 76 (197)
.|-..+...+++.+..+.|+.+++..+.++.+ +..+.+.|+ ++|. +|++++..-.-.+.-+..|++-.+-
T Consensus 13 ~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~---~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~kd 87 (104)
T 1wgy_A 13 HVYITEHSYVSVKAKVSSIAQEILKVVAEKIQ---YAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRKD 87 (104)
T ss_dssp EEECSSSCEEEECCCTTCBSHHHHHHHHHHHT---SCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEECC
T ss_pred EEEeccCceEEEEEeccchHHHHHHHHHHHhc---CCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeehH
Confidence 34445667788999999999999999999998 666678775 6775 3555543322344456788776543
No 238
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=64.78 E-value=8.7 Score=26.83 Aligned_cols=26 Identities=12% Similarity=0.024 Sum_probs=23.9
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhC
Q 029207 10 GSHFEIRVQPSDTVMAVKKNIEDVQG 35 (197)
Q Consensus 10 g~~~~iev~~~~TV~~LK~~I~~~~g 35 (197)
+..+.|-|.++.+..+|..+|..+.+
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~ 47 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKIS 47 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHc
Confidence 55789999999999999999999988
No 239
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=64.25 E-value=12 Score=29.68 Aligned_cols=25 Identities=8% Similarity=0.315 Sum_probs=23.0
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 029207 153 LEQTIQQIMDMGGGTWDKETVTRALQAA 180 (197)
Q Consensus 153 ~~~~i~~l~~MG~~~~~~~~~~~aL~~~ 180 (197)
.++.+..|+.+| |.+.++.+|++..
T Consensus 164 ~~ea~~AL~~LG---y~~~ea~~av~~~ 188 (212)
T 2ztd_A 164 RSPVVEALVGLG---FAAKQAEEATDTV 188 (212)
T ss_dssp HHHHHHHHHHTT---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 468999999999 9999999999876
No 240
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.67 E-value=25 Score=24.16 Aligned_cols=50 Identities=18% Similarity=0.219 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCCCcccccccCCCCeEEEEecc
Q 029207 21 DTVMAVKKNIEDVQGKDNYPCGQQLLIH--NGKVLKDETTLADNKVSEDGFLVVMLSK 76 (197)
Q Consensus 21 ~TV~~LK~~I~~~~g~~~~p~~~qrLi~--~Gk~L~D~~tL~~~~I~~~~~I~l~~~~ 76 (197)
.+..+|+.+....++ ++....+|+. .|..++|+.-+..+. .+++.+++.+
T Consensus 28 ~sL~EL~~K~~~~l~---l~~~~~~lvLeeDGT~VddEeyF~tLp---~nT~lmvL~~ 79 (91)
T 2eel_A 28 SSLQELISKTLDALV---IATGLVTLVLEEDGTVVDTEEFFQTLG---DNTHFMILEK 79 (91)
T ss_dssp SSHHHHHHHHHHHTT---CSSSCEEEEETTTCCBCCCHHHHTTSC---SSEEEEEEET
T ss_pred CCHHHHHHHHHHHhc---CCCCCcEEEEeeCCcEEechhhhhhCC---CCCEEEEEcC
Confidence 379999999999998 7655666654 588888776555543 4566655544
No 241
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=63.55 E-value=5.8 Score=27.89 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=25.6
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHh-------cCCHHHHHHHhh
Q 029207 155 QTIQQIMDMGGGTWDKETVTRALQAA-------YNNPERAVDYLY 192 (197)
Q Consensus 155 ~~i~~l~~MG~~~~~~~~~~~aL~~~-------~~N~~~A~EyL~ 192 (197)
..|+..++|| |++..|.++++.- |..++.-|.=|+
T Consensus 29 ~vV~~alemG---f~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll 70 (104)
T 2kna_A 29 PMVQEAIRMG---FSFKDIKKIMEEKIQISGSNYKSLEVLVADLV 70 (104)
T ss_dssp THHHHHHHTT---CCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHH
T ss_pred HHHHHHHHcC---ccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Confidence 3799999999 9999999998763 444454444444
No 242
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=63.45 E-value=17 Score=22.84 Aligned_cols=39 Identities=23% Similarity=0.242 Sum_probs=34.1
Q ss_pred CchHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 151 NDLEQTIQQIMDM--GGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 151 ~~~~~~i~~l~~M--G~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
+..+.+|+++.+| - ++++++..-|+.. +|++.-+|=+|.
T Consensus 15 sql~~Mve~V~~mFPq---v~~~~I~~DL~rT-gSVe~TienILe 55 (58)
T 4g3o_A 15 GQLNAMAHQIQEMFPQ---VPYHLVLQDLQLT-RSVEITTDNILE 55 (58)
T ss_dssp HHHHHHHHHHHHHCTT---SCHHHHHHHHHHH-CCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCC---CCHHHHHHHHHHh-CCHHHHHHHHHc
Confidence 4578899999999 6 7999999999987 999999987764
No 243
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=62.92 E-value=3.9 Score=25.53 Aligned_cols=23 Identities=4% Similarity=0.122 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHhcCCHHHHHHHh
Q 029207 168 WDKETVTRALQAAYNNPERAVDYL 191 (197)
Q Consensus 168 ~~~~~~~~aL~~~~~N~~~A~EyL 191 (197)
|+|+-+.+||+.+ +|..+|.+.|
T Consensus 21 ~Er~~I~~aL~~~-gn~~~aA~~L 43 (61)
T 1g2h_A 21 YEAQVLKLFYAEY-PSTRKLAQRL 43 (61)
T ss_dssp HHHHHHHHHHHHS-CSHHHHHHHT
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHh
Confidence 7888999999999 9999999876
No 244
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=62.24 E-value=6.9 Score=35.24 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=29.0
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 029207 14 EIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH 48 (197)
Q Consensus 14 ~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~ 48 (197)
.+.|..+.|+.+||+.|++..| +++++|||..
T Consensus 39 ~~rv~k~~~~~~l~~~va~~lg---~~~~~~RlW~ 70 (530)
T 2ylm_A 39 VFKVLKNSSLAEFVQSLSQTMG---FPQDQIRLWP 70 (530)
T ss_dssp EEEEETTSBHHHHHHHHHHHHT---SCGGGEEEEE
T ss_pred eEEEcCcCCHHHHHHHHHHHhC---cCcccEEEEE
Confidence 5678889999999999999999 9999999963
No 245
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=61.27 E-value=34 Score=24.62 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=46.2
Q ss_pred EEEEeCCCCCHHHHHHHHHH-HhCCC----CCCCCCeEEEeCCeec--CCCCcccccccCCCCeEEEE
Q 029207 13 FEIRVQPSDTVMAVKKNIED-VQGKD----NYPCGQQLLIHNGKVL--KDETTLADNKVSEDGFLVVM 73 (197)
Q Consensus 13 ~~iev~~~~TV~~LK~~I~~-~~g~~----~~p~~~qrLi~~Gk~L--~D~~tL~~~~I~~~~~I~l~ 73 (197)
+.+-|.++++.++|-+.+-. .++.+ .+..+.-....+|+.. +.+++|.+.||...+.|.+.
T Consensus 40 ~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 40 FALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp EEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred eeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 67889999999999886543 33311 1455566788999988 45789999999999988765
No 246
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=61.15 E-value=25 Score=25.35 Aligned_cols=68 Identities=16% Similarity=0.188 Sum_probs=44.2
Q ss_pred EEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC------CeEEE---eCCe--ecCCCCcccccccCCCCeEEEE
Q 029207 5 VKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCG------QQLLI---HNGK--VLKDETTLADNKVSEDGFLVVM 73 (197)
Q Consensus 5 Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~------~qrLi---~~Gk--~L~D~~tL~~~~I~~~~~I~l~ 73 (197)
|-..+...+++.+.-+.|+.+++..+.++.+ +..+ .+.|+ ++|. +|++++..-.-.+.-+..|++-
T Consensus 14 VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~---~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfvc 90 (120)
T 2dhz_A 14 VYMPDHSYVTIRSRLSASVQDILGSVTEKLQ---YSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFAC 90 (120)
T ss_dssp EECTTSCCCCEEECTTCCHHHHHHHHHHHST---TCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEEE
T ss_pred EEeccCceEEEEEeccccHHHHHHHHHHHhc---cccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEEe
Confidence 3344556677888889999999999999988 4333 67664 7774 4555443222234445677765
Q ss_pred ec
Q 029207 74 LS 75 (197)
Q Consensus 74 ~~ 75 (197)
.+
T Consensus 91 ~k 92 (120)
T 2dhz_A 91 TR 92 (120)
T ss_dssp CT
T ss_pred eh
Confidence 43
No 247
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=60.29 E-value=17 Score=32.51 Aligned_cols=58 Identities=21% Similarity=0.189 Sum_probs=43.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCeEEEeCC----eecCCCCcccc
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYP--CGQQLLIHNG----KVLKDETTLAD 61 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p--~~~qrLi~~G----k~L~D~~tL~~ 61 (197)
|.+.|..++|....+.|+...|+.+|-..|....| +. .+..-|.+.. +.|+++..+.|
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lg---L~e~~~~FgL~~~~~~~~~~L~~~~~i~D 280 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLA---MEDSRNMFALFEYNGHVDKAIESRTVVAD 280 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTT---CTTCCSEEEEEEESSSCEEECCTTSBHHH
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcC---CCCCCCceEEEEEeCCeeEecCCCCchhH
Confidence 35788889999999999999999999999999999 54 3445565432 23566555443
No 248
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=60.24 E-value=38 Score=23.10 Aligned_cols=57 Identities=9% Similarity=0.068 Sum_probs=41.4
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeec-CCCCccccc--ccCCCCeEEEEec
Q 029207 14 EIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVL-KDETTLADN--KVSEDGFLVVMLS 75 (197)
Q Consensus 14 ~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L-~D~~tL~~~--~I~~~~~I~l~~~ 75 (197)
.+-|..+.|+.+|...|.++.+ + +.+-|..+...+ ..+.+++++ ..+++++|+|.-.
T Consensus 26 KflV~~~~t~~~~v~~lRkrL~---l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~Ys 85 (91)
T 3w1s_C 26 VCKISMSQSFAMVILFLKRRLK---M--DHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVSYC 85 (91)
T ss_dssp EEEEETTSBHHHHHHHHHHHHT---C--SCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHhhC---C--ceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEEEe
Confidence 4567789999999999999988 5 566665577644 446677665 3346788887654
No 249
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=59.39 E-value=20 Score=24.41 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=41.2
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-CCeec-CCCCccccc--ccCCCCeEEEEec
Q 029207 14 EIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH-NGKVL-KDETTLADN--KVSEDGFLVVMLS 75 (197)
Q Consensus 14 ~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~-~Gk~L-~D~~tL~~~--~I~~~~~I~l~~~ 75 (197)
.+-|..+.||.++...|..+.+ +.+++--.+| +...+ ..+.+++++ ..+++++|+|.-.
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~---l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k~DGfLyv~Ys 85 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLK---LVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYC 85 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTT---CCSSSCCEEEETTTBCCCTTCBHHHHHHHHCBTTEEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHhC---CCCCCeEEEEECCccCCChhhHHHHHHHHhCCCCEEEEEEe
Confidence 4566789999999999999988 6666544444 65554 446677665 2346788887654
No 250
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=56.82 E-value=45 Score=24.14 Aligned_cols=59 Identities=20% Similarity=0.112 Sum_probs=41.1
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-CCeecCCCCccccc--ccC-CCCeEEEEecc
Q 029207 15 IRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH-NGKVLKDETTLADN--KVS-EDGFLVVMLSK 76 (197)
Q Consensus 15 iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~-~Gk~L~D~~tL~~~--~I~-~~~~I~l~~~~ 76 (197)
+-|..+.||++|...|..... +.+++--.+| ++....-+.+++++ .-+ ++++|+|....
T Consensus 57 flVp~~~tv~qf~~~IRkrl~---L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys~ 119 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKRIH---LRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSD 119 (125)
T ss_dssp EEEETTSBHHHHHHHHHHHTT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEES
T ss_pred EEcCCCCEeeeehhhhHhhcC---CCccccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEecC
Confidence 346688999999999999988 6666644444 55444566777776 233 56788887643
No 251
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=56.76 E-value=22 Score=24.84 Aligned_cols=50 Identities=10% Similarity=0.153 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHhCCCCCCCC--CeEEE--eCCeecCCCCcccccccCCCCeEEEEecc
Q 029207 21 DTVMAVKKNIEDVQGKDNYPCG--QQLLI--HNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (197)
Q Consensus 21 ~TV~~LK~~I~~~~g~~~~p~~--~qrLi--~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~ 76 (197)
.+..+|+.+...+++ ++.. ..+|+ ..|..++|+.-+..+. ++++.+++.+
T Consensus 37 ~SL~EL~~K~~~~l~---l~~~~~~~~lvLeeDGT~VddEeYF~tLp---~nT~lmvL~~ 90 (100)
T 1f2r_I 37 SSLEELRSKACELLA---IDKSLTPITLVLAEDGTIVDDDDYFLCLP---SNTKFVALAC 90 (100)
T ss_dssp SSHHHHHHHHHHHHC---CCGGGCSCEEEESSSCCBCCSSSSSSSSC---SCCEEEEECS
T ss_pred CCHHHHHHHHHHHhc---cCCCCCceEEEEeeCCcEEechhHhhcCC---CCCEEEEEcC
Confidence 379999999999999 7542 34553 4799998887665543 4455555443
No 252
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=56.04 E-value=9.1 Score=32.42 Aligned_cols=29 Identities=21% Similarity=0.490 Sum_probs=25.6
Q ss_pred CchHHHHHHHHHcCCCCCCHHHHHHHHHHhcC
Q 029207 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYN 182 (197)
Q Consensus 151 ~~~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~ 182 (197)
.+++..|+.|.+|| |+.+++.++|.....
T Consensus 44 ~~~e~~l~~L~d~G---fs~~~i~~il~~~P~ 72 (335)
T 4fp9_B 44 LELERVMSSLLDMG---FSNAHINELLSVRRG 72 (335)
T ss_dssp HHHHHHHHHHHHTT---CCHHHHHHHHHHCSS
T ss_pred ccHHHHHHHHHHCC---CCHHHHHHHHHhCcc
Confidence 35899999999999 999999999988654
No 253
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=56.03 E-value=34 Score=24.54 Aligned_cols=58 Identities=26% Similarity=0.267 Sum_probs=41.9
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCCCccccc--cc-CCCCeEEEEec
Q 029207 15 IRVQPSDTVMAVKKNIEDVQGKDNYPCGQ-QLLIHNGKVLKDETTLADN--KV-SEDGFLVVMLS 75 (197)
Q Consensus 15 iev~~~~TV~~LK~~I~~~~g~~~~p~~~-qrLi~~Gk~L~D~~tL~~~--~I-~~~~~I~l~~~ 75 (197)
+-|..+.||++|...|....+ +.+++ +-|..++....-+.+++++ .- .++++|+|...
T Consensus 52 flVp~~~tv~qf~~~iRkrl~---l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Ys 113 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQ---LEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYS 113 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHT---CCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhC---CCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEEe
Confidence 346689999999999999998 66665 4455577766667787776 23 24668888754
No 254
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=55.70 E-value=25 Score=23.89 Aligned_cols=33 Identities=12% Similarity=0.024 Sum_probs=24.9
Q ss_pred EEEEeCCCcE-EEEEeC-CCCCHHHHHHHHHHHhC
Q 029207 3 LTVKTLKGSH-FEIRVQ-PSDTVMAVKKNIEDVQG 35 (197)
Q Consensus 3 I~Vk~~~g~~-~~iev~-~~~TV~~LK~~I~~~~g 35 (197)
|+.|....+. ..|.++ ...+|.+||+.|..+.+
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~k 43 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREK 43 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHT
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhC
Confidence 5666665544 457777 45699999999999888
No 255
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=55.50 E-value=28 Score=32.09 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=38.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH 48 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~ 48 (197)
|.+.|..++|....++|+...|+.+|-..|+.+.|. ...+..-|.+
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL--~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISL--KDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTC--SSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCC--cccccceeEE
Confidence 467889999999999999999999999999999993 3345566665
No 256
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=55.21 E-value=31 Score=23.65 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=34.5
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCe-EEEeCCeec
Q 029207 10 GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQ-LLIHNGKVL 53 (197)
Q Consensus 10 g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~q-rLi~~Gk~L 53 (197)
...+.+.|+...+=.++|+.|+..++ +.+... .|+..||.=
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~---VkV~~VnT~~~~gK~k 68 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFE---VEVEVVNTLVVKGKVK 68 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSC---CCCCEEEEEEECCCBC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcC---CceEEEEEEEeCCcee
Confidence 36899999999999999999999999 878777 456787643
No 257
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=54.04 E-value=24 Score=24.76 Aligned_cols=57 Identities=19% Similarity=0.076 Sum_probs=38.7
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCCCccccc--cc-CCCCeEEEEe
Q 029207 15 IRVQPSDTVMAVKKNIEDVQGKDNYPCGQ-QLLIHNGKVLKDETTLADN--KV-SEDGFLVVML 74 (197)
Q Consensus 15 iev~~~~TV~~LK~~I~~~~g~~~~p~~~-qrLi~~Gk~L~D~~tL~~~--~I-~~~~~I~l~~ 74 (197)
+-|..+.||++|...|....+ +.+++ +-|+.++....-+.+|+++ .. .++++|+|..
T Consensus 48 flVp~~~tv~~~~~~iRk~l~---l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Y 108 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIH---LRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAY 108 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEeCCCCcHHHHHHHHHHHhc---CCCCCcEEEEECCEecCccChHHHHHHHcCCCCCEEEEEE
Confidence 345568899999999999988 65555 4554455544556777776 22 2467888764
No 258
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=53.84 E-value=22 Score=22.18 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=31.3
Q ss_pred chHHHHHHHHHc-CCCCCCHHHHHHHHHHhcCCHHHHHHH
Q 029207 152 DLEQTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDY 190 (197)
Q Consensus 152 ~~~~~i~~l~~M-G~~~~~~~~~~~aL~~~~~N~~~A~Ey 190 (197)
+.+++|..+... | -..+-+.++|.-+.+|.+||+.-
T Consensus 6 ~q~~mv~~~s~~Tg---mn~~~s~~cL~~~~Wd~~~A~~~ 42 (59)
T 1oai_A 6 EQQEMLQAFSTQSG---MNLEWSQKCLQDNNWDYTRSAQA 42 (59)
T ss_dssp HHHHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 457788888887 8 88999999999999999999954
No 259
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=53.83 E-value=44 Score=27.47 Aligned_cols=69 Identities=20% Similarity=0.200 Sum_probs=46.5
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eC----CeecCCCCccccc----ccCCCCeEEE
Q 029207 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HN----GKVLKDETTLADN----KVSEDGFLVV 72 (197)
Q Consensus 3 I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi--~~----Gk~L~D~~tL~~~----~I~~~~~I~l 72 (197)
|.|-..+|....|.|++++|+.+|-+.+..+.+. ...+.--|+ +. -+.|+|...|-+. .....+.+++
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~--~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~f 111 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHC--GYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIF 111 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCC--CCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCC--CCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEEE
Confidence 4455568889999999999999999988887763 223333332 11 2678888776554 4455566655
Q ss_pred E
Q 029207 73 M 73 (197)
Q Consensus 73 ~ 73 (197)
.
T Consensus 112 ~ 112 (281)
T 4gmv_A 112 M 112 (281)
T ss_dssp E
T ss_pred E
Confidence 4
No 260
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=53.65 E-value=49 Score=23.58 Aligned_cols=59 Identities=22% Similarity=0.192 Sum_probs=40.6
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-CCeecCCCCccccc--cc-CCCCeEEEEecc
Q 029207 15 IRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH-NGKVLKDETTLADN--KV-SEDGFLVVMLSK 76 (197)
Q Consensus 15 iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~-~Gk~L~D~~tL~~~--~I-~~~~~I~l~~~~ 76 (197)
+-|..+.||++|...|....+ +.+++--.+| ++....-+.+++++ .- .++++|+|....
T Consensus 51 flVp~~~tv~qf~~~iRkrl~---l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~ 113 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKRIM---LPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSG 113 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHTT---CCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhC---cCCCccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEEec
Confidence 346789999999999999988 6665544444 55444556777766 22 346688887543
No 261
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=53.53 E-value=25 Score=25.06 Aligned_cols=58 Identities=28% Similarity=0.256 Sum_probs=39.9
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCCCccccc--cc-CCCCeEEEEecc
Q 029207 16 RVQPSDTVMAVKKNIEDVQGKDNYPCGQ-QLLIHNGKVLKDETTLADN--KV-SEDGFLVVMLSK 76 (197)
Q Consensus 16 ev~~~~TV~~LK~~I~~~~g~~~~p~~~-qrLi~~Gk~L~D~~tL~~~--~I-~~~~~I~l~~~~ 76 (197)
-|..+.||++|...|....+ +.+++ +-|+.++....-+.+++++ .. .++++|+|....
T Consensus 50 lVp~~~tv~~f~~~iRk~l~---l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~ 111 (117)
T 1eo6_A 50 LVPSDITVAQFMWIIRKRIQ---LPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSG 111 (117)
T ss_dssp EEETTSBHHHHHHHHHHHHT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred EcCCCCCHHHHHHhhHHhhc---CCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEeC
Confidence 45568899999999999988 65555 4454455544556777776 22 347799887653
No 262
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=53.45 E-value=18 Score=24.96 Aligned_cols=58 Identities=9% Similarity=-0.033 Sum_probs=40.1
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 029207 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (197)
Q Consensus 11 ~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~ 73 (197)
..+.+++....||.++-+...-......+......+-.+|+... .+.-+++||.|-++
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIy 83 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIY 83 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEEC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEE
Confidence 34667888999999998876532221004455678888888886 34457889999876
No 263
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=53.03 E-value=50 Score=24.52 Aligned_cols=64 Identities=14% Similarity=0.188 Sum_probs=44.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCC----eEEEeC-----------------Cee-cCCCCcccccccCCCCe
Q 029207 12 HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQ----QLLIHN-----------------GKV-LKDETTLADNKVSEDGF 69 (197)
Q Consensus 12 ~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~----qrLi~~-----------------Gk~-L~D~~tL~~~~I~~~~~ 69 (197)
.+.|-...+.|+.+|=..|.+.... .+... .++||- |+. -+|++||.+++..-|+.
T Consensus 55 ElQIYTW~daTLrEL~~Lvk~~~p~--ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDy 132 (143)
T 4a6q_A 55 ELQIYTWMDATLKELTSLVKEVYPE--ARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDY 132 (143)
T ss_dssp CEEEEECTTCBHHHHHHHHHHHCGG--GGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCE
T ss_pred eeEEeeCCCCCHHHHHHHHHHhCcc--ccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCE
Confidence 4677778999999999999887541 11111 233432 322 25789999999999999
Q ss_pred EEEEeccc
Q 029207 70 LVVMLSKS 77 (197)
Q Consensus 70 I~l~~~~~ 77 (197)
|.|-+..+
T Consensus 133 idvaI~pP 140 (143)
T 4a6q_A 133 LDIAITPP 140 (143)
T ss_dssp EEEEEECG
T ss_pred EEEEEeCC
Confidence 99987544
No 264
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=52.54 E-value=5.6 Score=26.85 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHhcCCHHHHHHHh
Q 029207 168 WDKETVTRALQAAYNNPERAVDYL 191 (197)
Q Consensus 168 ~~~~~~~~aL~~~~~N~~~A~EyL 191 (197)
|+|+-+.+||+.+.+|..+|.+.|
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L 74 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL 74 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 789999999999999999999876
No 265
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=51.69 E-value=8.2 Score=26.67 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHhcCCHHHHHHHh
Q 029207 168 WDKETVTRALQAAYNNPERAVDYL 191 (197)
Q Consensus 168 ~~~~~~~~aL~~~~~N~~~A~EyL 191 (197)
|+|+-+.+||+.+.+|..+|.+.|
T Consensus 58 ~Er~~I~~aL~~~~gn~~~AA~~L 81 (98)
T 1eto_A 58 VEQPLLDMVMQYTLGNQTRAALMM 81 (98)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh
Confidence 678889999999999999999887
No 266
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.22 E-value=48 Score=20.72 Aligned_cols=39 Identities=23% Similarity=0.228 Sum_probs=34.2
Q ss_pred CchHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 151 NDLEQTIQQIMDM--GGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 151 ~~~~~~i~~l~~M--G~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
+..+.+|+++.+| - ++++.+.+-|+... |++.-+|=+|.
T Consensus 11 ~q~~~mv~~V~~mfP~---vp~~~I~~DL~~Tg-sVe~TienILe 51 (58)
T 2ejs_A 11 SQLNAMAHQIQEMFPQ---VPYHLVLQDLQLTR-SVEITTDNILE 51 (58)
T ss_dssp CHHHHHHHHHHHHCCS---SCHHHHHHHHHHHC-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC---CCHHHHHHHHHHhC-CHHHHHHHHHh
Confidence 4578999999999 6 79999999998887 99999987764
No 267
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=47.88 E-value=33 Score=27.84 Aligned_cols=68 Identities=7% Similarity=0.052 Sum_probs=41.4
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC-------CeecCCCCccccc--ccCCCCeEEEE
Q 029207 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN-------GKVLKDETTLADN--KVSEDGFLVVM 73 (197)
Q Consensus 3 I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~-------Gk~L~D~~tL~~~--~I~~~~~I~l~ 73 (197)
|+|-.-+|....|.|++++|+.+|=..+..+.+ +..+.-..+|- -|.|+|...+-+. ....++.+++.
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~---~~~~~~W~l~E~~~~l~lER~ledhE~V~ev~~~~~s~~~l~f~ 87 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSH---SVDDNSWTLVEHHPHLGLERCLEDHELVVQVESTMASESKFLFR 87 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC----------EEEEEEETTTTEEEECCTTSBHHHHHHTCCSSCEEEEE
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcC---CCCCCCEEEEEECCCcccccccccchhHHHHHhccCCCceEEEe
Confidence 556667888999999999999999998887765 32222222221 2678888765544 22234444443
No 268
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=46.21 E-value=72 Score=23.97 Aligned_cols=56 Identities=13% Similarity=0.115 Sum_probs=37.7
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCC---------CCCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 029207 14 EIRVQPSDTVMAVKKNIEDVQGKDNYP---------CGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (197)
Q Consensus 14 ~iev~~~~TV~~LK~~I~~~~g~~~~p---------~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~ 73 (197)
.++++. .||.+|.+.+...+.. +. .....+..||+......- .+.-+++||.|.++
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~--l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~ 81 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPA--LKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLF 81 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGG--GHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEE
T ss_pred eEEECC-CcHHHHHHHHHhhChh--hhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEE
Confidence 445655 8999999999876420 10 234567788888765332 34468999999886
No 269
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=45.77 E-value=42 Score=22.89 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=33.7
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCe-EEEeCCee
Q 029207 10 GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQ-LLIHNGKV 52 (197)
Q Consensus 10 g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~q-rLi~~Gk~ 52 (197)
...+.+.|+...+=.++|+.|+..++ +.+... .|+..||.
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~---VkV~~VnT~~~~gK~ 61 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFK---VKVVKVNTLHVRGKK 61 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTT---CCEEEEEEEEECCCE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhC---CceeeeeeeeeCCce
Confidence 36899999999999999999999999 777776 45677764
No 270
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=45.77 E-value=31 Score=18.89 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=20.1
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHH
Q 029207 153 LEQTIQQIMDMGGGTWDKETVTRAL 177 (197)
Q Consensus 153 ~~~~i~~l~~MG~~~~~~~~~~~aL 177 (197)
.++.+..|.+-| .+|+..++||
T Consensus 9 Q~eLL~aLL~SG---lsKe~LiqaL 30 (32)
T 1g2y_A 9 QTEMLAALLESG---LSKEALIQAL 30 (32)
T ss_dssp HHHHHHHHHHTT---CCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CcHHHHHHHh
Confidence 468899999999 9999999998
No 271
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=45.00 E-value=18 Score=27.50 Aligned_cols=27 Identities=15% Similarity=0.385 Sum_probs=22.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHH
Q 029207 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKN 29 (197)
Q Consensus 2 ~I~Vk~~~g~~~~iev~~~~TV~~LK~~ 29 (197)
.|+|. ++|+.+.+++++..|+.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 5 HIELT-INGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHH
Confidence 56666 7899999999999999987554
No 272
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=44.40 E-value=18 Score=27.38 Aligned_cols=27 Identities=15% Similarity=0.439 Sum_probs=22.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHH
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKK 28 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~ 28 (197)
|.|+++ ++|+.+.+++++..|+.++-.
T Consensus 4 ~~i~~~-vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 4 ITINLN-LNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEEEE-ETTEEEEEEECSSSBHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCCHHHHHH
Confidence 356666 789999999999999998754
No 273
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=44.31 E-value=28 Score=23.85 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.7
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHH
Q 029207 2 KLTVKTLKGSHFEIRVQPSDTVMAVKK 28 (197)
Q Consensus 2 ~I~Vk~~~g~~~~iev~~~~TV~~LK~ 28 (197)
+|+|...+|..+.|++....|+.+.-.
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~ 28 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALR 28 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHH
Confidence 689999999999999999999988554
No 274
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=42.67 E-value=5.2 Score=31.23 Aligned_cols=24 Identities=8% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 029207 154 EQTIQQIMDMGGGTWDKETVTRALQAA 180 (197)
Q Consensus 154 ~~~i~~l~~MG~~~~~~~~~~~aL~~~ 180 (197)
++.+..|+.+| |.+.++.+|++..
T Consensus 147 ~ea~~AL~~LG---y~~~ea~~av~~~ 170 (191)
T 1ixr_A 147 EEAVMALAALG---FKEAQARAVVLDL 170 (191)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 57999999999 9999999999887
No 275
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=42.17 E-value=23 Score=23.47 Aligned_cols=36 Identities=8% Similarity=-0.057 Sum_probs=29.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----CCCeEEEeCC
Q 029207 12 HFEIRVQPSDTVMAVKKNIEDVQGKDNYP-----CGQQLLIHNG 50 (197)
Q Consensus 12 ~~~iev~~~~TV~~LK~~I~~~~g~~~~p-----~~~qrLi~~G 50 (197)
.+.|-|.++.+..+|..+|..+.+ .. ....+|-|+.
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~---~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKIS---NTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTT---TTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHc---ccccccccceeEEEEEc
Confidence 578899999999999999999998 43 2556776765
No 276
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}
Probab=42.16 E-value=32 Score=27.29 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=39.1
Q ss_pred cCCCchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 148 VAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 148 ~~g~~~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
..|...++.+..|...| ..+++++..||+++..--..|+++|+-
T Consensus 161 Fig~ar~qLl~aL~~l~--ll~~~~~~~a~~~~~~~~~~~~~~~~~ 204 (214)
T 3kvh_A 161 FVSTAKCQLLFALKVLN--MMPEEKLVEALAAATEKQKKALEKLLP 204 (214)
T ss_dssp BCTTHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHcC--CCCHHHHHHHHHhccCcchhHHHhhCc
Confidence 45788999999999999 569999999999999988999999986
No 277
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=42.04 E-value=20 Score=26.99 Aligned_cols=28 Identities=14% Similarity=0.316 Sum_probs=22.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHH
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKN 29 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~ 29 (197)
|.|+|. ++|+.+.+++++..||.++-..
T Consensus 10 m~i~~~-ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 10 MRISAT-INGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 456666 6899999999999999887654
No 278
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=41.80 E-value=34 Score=27.83 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=32.1
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHhh
Q 029207 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLY 192 (197)
Q Consensus 153 ~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~ 192 (197)
.+..+..+..|| |+++++...|+.-.+|--.|.=|||
T Consensus 289 ~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~y~ll 325 (328)
T 3fe3_A 289 DQKRIDIMVGMG---YSQEEIQESLSKMKYDEITATYLLL 325 (328)
T ss_dssp CHHHHHHHHHTT---CCHHHHHHHHHTTCCSHHHHHHHHH
T ss_pred cHHHHHHHHHCC---CCHHHHHHHHHcCCCCHHHHHHHHh
Confidence 567889999999 9999999999999999888876665
No 279
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=41.70 E-value=21 Score=32.05 Aligned_cols=70 Identities=13% Similarity=0.194 Sum_probs=52.1
Q ss_pred EEEEeCC--CcEEE----EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC----C--eecC-CCCccccc--ccCCC
Q 029207 3 LTVKTLK--GSHFE----IRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN----G--KVLK-DETTLADN--KVSED 67 (197)
Q Consensus 3 I~Vk~~~--g~~~~----iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~----G--k~L~-D~~tL~~~--~I~~~ 67 (197)
|++|..+ .+++. +-|..+.+|.+|-..|.+..| +|++.--++|. + ..|+ .+.++.+. .|.+|
T Consensus 133 lFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g---~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~G 209 (530)
T 2ylm_A 133 LFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAG---FIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDG 209 (530)
T ss_dssp EEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHT---CCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTT
T ss_pred EEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcC---CCCCCceEEEEecCCCceeEcccccccHHHHHhcccCC
Confidence 5566443 23332 567889999999999999999 88876655554 2 3467 57899999 99999
Q ss_pred CeEEEEec
Q 029207 68 GFLVVMLS 75 (197)
Q Consensus 68 ~~I~l~~~ 75 (197)
+.|.+-..
T Consensus 210 dII~fQ~~ 217 (530)
T 2ylm_A 210 DIIVFQKD 217 (530)
T ss_dssp EEEEEEEC
T ss_pred CEEEEEec
Confidence 99877653
No 280
>2hjj_A Hypothetical protein YKFF; northeast structural genomics consortium (NESG), PROT structure initiative., PSI-2, structural genomics, unknown; NMR {Escherichia coli} SCOP: d.50.3.3
Probab=41.43 E-value=15 Score=24.84 Aligned_cols=20 Identities=20% Similarity=0.428 Sum_probs=14.1
Q ss_pred CCCCCCHHHHHHHHHHhcCCH
Q 029207 164 GGGTWDKETVTRALQAAYNNP 184 (197)
Q Consensus 164 G~~~~~~~~~~~aL~~~~~N~ 184 (197)
.-|.|+|+|+. |.-++|.|+
T Consensus 8 pegpFtReQA~-aV~~~Y~NV 27 (87)
T 2hjj_A 8 PPGPFTRRQAQ-AVTTTYSNI 27 (87)
T ss_dssp --CCCCHHHHH-HHHHHCTTE
T ss_pred CCCCccHHHHH-HHHHHhccc
Confidence 34689999965 557788875
No 281
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=40.64 E-value=23 Score=26.79 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=22.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHH
Q 029207 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKN 29 (197)
Q Consensus 2 ~I~Vk~~~g~~~~iev~~~~TV~~LK~~ 29 (197)
.|++. ++|+.+.++++++.|+.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 5 IITVN-VNGKAQEKAVEPRTLLIHFLRE 31 (163)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 45565 7899999999999999987554
No 282
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=39.69 E-value=43 Score=20.73 Aligned_cols=35 Identities=11% Similarity=-0.056 Sum_probs=29.5
Q ss_pred hHHHHHHHHHc-CCCCCCHHHHHHHHHHhcCCHHHHHHH
Q 029207 153 LEQTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDY 190 (197)
Q Consensus 153 ~~~~i~~l~~M-G~~~~~~~~~~~aL~~~~~N~~~A~Ey 190 (197)
.+++|..|... | -..+=...+|.-+.+|.++|+.-
T Consensus 6 q~~mv~~~s~~T~---Mn~e~S~~cL~~n~Wd~~~A~~~ 41 (57)
T 2jp7_A 6 QLELLNKLHLETK---LNAEYTFMLAEQSNWNYEVAIKG 41 (57)
T ss_dssp HHHHHHHHHHHHC---SCHHHHHHHHHHTTTCSHHHHHH
T ss_pred HHHHHHHHHHHHC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 46778888776 7 88999999999999999999854
No 283
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=38.80 E-value=73 Score=22.24 Aligned_cols=43 Identities=12% Similarity=0.082 Sum_probs=35.0
Q ss_pred EEEEe-CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe
Q 029207 3 LTVKT-LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGK 51 (197)
Q Consensus 3 I~Vk~-~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk 51 (197)
|.||. ..|.++.|.+....+..+|..++...+| ..+-|.|-..
T Consensus 9 vRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fG------q~ldL~y~n~ 52 (103)
T 2cu1_A 9 VRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFG------QSMDLHYTNN 52 (103)
T ss_dssp EEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHS------SCEEEEECSS
T ss_pred EEEEEEecCeEEEEeccCCccHHHHHHHHHHHhC------CeeeEEEecc
Confidence 45554 4788899999999999999999999999 3567777654
No 284
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=38.79 E-value=17 Score=25.86 Aligned_cols=62 Identities=18% Similarity=0.140 Sum_probs=45.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe---ecCCCCcccccccCCCCeEEEE
Q 029207 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGK---VLKDETTLADNKVSEDGFLVVM 73 (197)
Q Consensus 11 ~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk---~L~D~~tL~~~~I~~~~~I~l~ 73 (197)
..+++.|..+.-|+.|.-+|-++.... -...+.-|-.--| .|+-..+|..|||+-+..+++.
T Consensus 36 ~~~~lrV~GdlHIGGvmLkLVE~i~i~-~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 36 RDVTLRVTGEVHIGGVMLKLVEKLDVK-KDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp BCCEECCCTTSCHHHHHHHHHHHCCSC-CCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBB
T ss_pred ccEEEEEeeccccccchhhhhhhhccc-ccchHhhhhhhhhchhhhcchhhHhhhceeccccceec
Confidence 667888988899999999988776511 2344555554332 4677889999999998888764
No 285
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=38.67 E-value=46 Score=31.02 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=39.5
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCC--------CeEEEeCCe--e----cC--CCCcccccccCCCCeEEEE
Q 029207 13 FEIRVQPSDTVMAVKKNIEDVQGKDNYPCG--------QQLLIHNGK--V----LK--DETTLADNKVSEDGFLVVM 73 (197)
Q Consensus 13 ~~iev~~~~TV~~LK~~I~~~~g~~~~p~~--------~qrLi~~Gk--~----L~--D~~tL~~~~I~~~~~I~l~ 73 (197)
..++++.+.|+.+|-+.|+.+.... +..- ..+++|... . .+ -+++|.++||++|+.|.|.
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 714 QNIQFSPSAKLQEVLDYLTNSASLQ-MKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp EEEEECTTSBHHHHHHHHHHCTTTC-CSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred EEEEECCcChHHHHHHHHHhhhccC-cccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 4577777889999988888853300 2111 236666532 1 11 2578999999999998875
No 286
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=38.63 E-value=39 Score=23.22 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=31.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeE-EEeCCee
Q 029207 12 HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQL-LIHNGKV 52 (197)
Q Consensus 12 ~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qr-Li~~Gk~ 52 (197)
.+.+.|++..|=.++|+.|+..++ +.+.... ++..||.
T Consensus 24 ~y~F~V~~~anK~eIK~aVE~lf~---VkV~~VNT~~~~gK~ 62 (95)
T 2zjr_Q 24 VYSFWVSPKATKTEIKDAIQQAFG---VRVIGISTMNVPGKR 62 (95)
T ss_dssp CCEEEECSSCTHHHHHHHHHHHHC---CCCSEEEECCBCCCC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhC---CCceEEEeEEeCCcc
Confidence 389999999999999999999999 8787774 4567753
No 287
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=38.57 E-value=39 Score=23.74 Aligned_cols=37 Identities=30% Similarity=0.353 Sum_probs=30.8
Q ss_pred HHHHHHHH-cCCCCCCHHHHHHHHHHhcCCHHHHHHHhhCc
Q 029207 155 QTIQQIMD-MGGGTWDKETVTRALQAAYNNPERAVDYLYSI 194 (197)
Q Consensus 155 ~~i~~l~~-MG~~~~~~~~~~~aL~~~~~N~~~A~EyL~~~ 194 (197)
+.|.+||+ .. -+--.|.+||-...++.+.|-.||+++
T Consensus 15 ~~i~~lMeef~---~DL~sVTqAlLK~SGel~at~~fL~~~ 52 (111)
T 3k6g_A 15 KIIRQLMEKFN---LDLSTVTQAFLKNSGELEATSAFLASG 52 (111)
T ss_dssp HHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHh---hhHHHHHHHHHHccccHHHHHHHHhCC
Confidence 34555554 57 799999999999999999999999984
No 288
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=38.38 E-value=44 Score=22.59 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=24.8
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHH
Q 029207 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDV 33 (197)
Q Consensus 3 I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~ 33 (197)
+.|...+|-+|.++|..+.-+..-|+.|+..
T Consensus 39 viisf~ngatfqvevpgsqh~~sqk~~~erm 69 (104)
T 3chb_D 39 AIITFKNGATFQVEVPGSQHIDSQKKAIERM 69 (104)
T ss_dssp EEEECTTCCEEEECCCCTTSCHHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 4556668999999999998888888777654
No 289
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=38.15 E-value=48 Score=22.74 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=39.3
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe-ec-CCCCccccc--ccCCCCeEEEEec
Q 029207 14 EIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGK-VL-KDETTLADN--KVSEDGFLVVMLS 75 (197)
Q Consensus 14 ~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk-~L-~D~~tL~~~--~I~~~~~I~l~~~ 75 (197)
.+-|..+.||.+|...|.++.+ +. .+-| |-+. .+ ..+.+++++ ..+++++|+|.-+
T Consensus 31 KflV~~~~t~~~~~~~lRkrL~---l~--alFl-yvn~~~~Ps~d~~m~~LY~~~kdDGfLyi~Ys 90 (96)
T 1wz3_A 31 KFKVSGSDKFANVIDFLRRQLH---SD--SLFV-YVNSAFSPNPDESVIDLYNNFGFDGKLVVNYA 90 (96)
T ss_dssp EEEEETTSBTHHHHHHHHHHHT---CS--SCEE-EEEEEECCCTTSBHHHHHHHHCBTTBEEEEEE
T ss_pred EEEeCCCCcHHHHHHHHHHhcC---Cc--eEEE-EECCcccCChhhHHHHHHHHhCCCCEEEEEEe
Confidence 3556688999999999999988 55 5555 4444 44 556777766 3445778887654
No 290
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.94 E-value=75 Score=20.03 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=34.5
Q ss_pred CchHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCHHHHHHHhhC
Q 029207 151 NDLEQTIQQIMDM--GGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (197)
Q Consensus 151 ~~~~~~i~~l~~M--G~~~~~~~~~~~aL~~~~~N~~~A~EyL~~ 193 (197)
+..+.+++++.+| - ++++.+.+-|+... |++.-+|=+|.
T Consensus 11 ~ql~~mv~~V~~mfP~---vp~~~I~~DL~~Tg-sVe~TienILe 51 (61)
T 2ekf_A 11 VQLATLAQRVKEVLPH---VPLGVIQRDLAKTG-CVDLTITNLLE 51 (61)
T ss_dssp CCHHHHHHHHHHHCSS---SCHHHHHHHHHTSC-CHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCC---CCHHHHHHHHHHhC-CHHHHHHHHHc
Confidence 4578999999999 6 79999999998875 99999998886
No 291
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=36.44 E-value=78 Score=24.99 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=28.4
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhC
Q 029207 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQG 35 (197)
Q Consensus 3 I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g 35 (197)
|.|-..+|....|.|+++.|+.+|-+.|..+.+
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~ 69 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTH 69 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHC
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhC
Confidence 445556788889999999999999999999988
No 292
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=34.88 E-value=61 Score=22.83 Aligned_cols=70 Identities=17% Similarity=0.283 Sum_probs=44.5
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-------CCCeEEE---eCCe--ecCC-CCcccccccCCCCe
Q 029207 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYP-------CGQQLLI---HNGK--VLKD-ETTLADNKVSEDGF 69 (197)
Q Consensus 3 I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p-------~~~qrLi---~~Gk--~L~D-~~tL~~~~I~~~~~ 69 (197)
|.+-..+|-.+.+++..+.|+.++|..+-++-+. +| ++.-.+. ..|. .|.| ++.|.++..- -..
T Consensus 22 v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~--~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf-~pi 98 (108)
T 2v1y_A 22 VECLLPNGMIVTLECLREATLITIKHELFKEARK--YPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF-QPF 98 (108)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGG--STTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS-SSE
T ss_pred EEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHh--CchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc-ceE
Confidence 3444568988899999999999999988776331 22 2222222 2243 3655 5789888766 355
Q ss_pred EEEEec
Q 029207 70 LVVMLS 75 (197)
Q Consensus 70 I~l~~~ 75 (197)
+-++-+
T Consensus 99 Lklver 104 (108)
T 2v1y_A 99 LKVIEP 104 (108)
T ss_dssp EEEECC
T ss_pred EEEEee
Confidence 555543
No 293
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=33.93 E-value=27 Score=29.57 Aligned_cols=36 Identities=19% Similarity=0.497 Sum_probs=26.6
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHH-------HhcCCHHHHHHHhhC
Q 029207 155 QTIQQIMDMGGGTWDKETVTRALQ-------AAYNNPERAVDYLYS 193 (197)
Q Consensus 155 ~~i~~l~~MG~~~~~~~~~~~aL~-------~~~~N~~~A~EyL~~ 193 (197)
..|+..++|| |++..|.++++ -.|..++.-|+=|++
T Consensus 121 ~~v~~~l~mG---f~~~~v~~~~~~~~~~~g~~~~~~~~lv~~~l~ 163 (345)
T 3t6p_A 121 PVVKSALEMG---FNRDLVKQTVQSKILTTGENYKTVNDIVSALLN 163 (345)
T ss_dssp HHHHHHHHTT---CCHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHH
T ss_pred HHHHHHHHhc---ccHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHh
Confidence 6789999999 99999999986 244555555554443
No 294
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=33.01 E-value=26 Score=26.20 Aligned_cols=25 Identities=8% Similarity=0.147 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhCcC
Q 029207 171 ETVTRALQAAYNNPERAVDYLYSIS 195 (197)
Q Consensus 171 ~~~~~aL~~~~~N~~~A~EyL~~~~ 195 (197)
..++..|+-.-+|++.++.||++|+
T Consensus 84 ~G~l~vL~D~G~~d~e~~~wLftpd 108 (148)
T 2kfs_A 84 PGLLTILHDGGYRDTEIMRWLFTPD 108 (148)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTSCE
T ss_pred ccHHHHHhcCCCCHHHHHHHhcCCC
Confidence 3467777877788999999999854
No 295
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=32.20 E-value=31 Score=25.90 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=21.6
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHH
Q 029207 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNI 30 (197)
Q Consensus 3 I~Vk~~~g~~~~iev~~~~TV~~LK~~I 30 (197)
|++. ++|+.+.+++++..|+.++-..+
T Consensus 5 i~~~-vNG~~~~v~~~~~~tLL~~Lr~~ 31 (161)
T 1rm6_C 5 LRLT-LNGRAREDLVPDNMLLLDYLRET 31 (161)
T ss_dssp EEEE-ETTEEEEEEEETTCBHHHHHHHT
T ss_pred EEEE-ECCEEEEEecCCcCcHHHHHHHc
Confidence 4444 69999999999999998877654
No 296
>2jx5_A GLUB(S27A); ubiquitin, ribosome, recombination, evolution, ribosomal protein; NMR {Giardia lamblia atcc 50803}
Probab=32.20 E-value=92 Score=19.34 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=39.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCccc
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~L~D~~tL~ 60 (197)
|-|.|| +..+.+.+++....-..+|-..+... | -...|-..|++|.....|.
T Consensus 1 mlvivr-lqdq~lpfelpaga~asqls~lls~~-g------m~fslhtqgrvlseaaeln 52 (69)
T 2jx5_A 1 MLVIVR-LQDQTLPFELPAGARASQLSNLLSSS-G------MAFSLHTQGRVLSEAAELN 52 (69)
T ss_dssp CEEEEE-ETTEEEEEECCTTCCHHHHHHHHHHS-S------CCCEEEETTEECCTTCCCC
T ss_pred CeEEEE-eccccccccccccccHHHHHHHHhhc-C------ceEEEeecchhhhhHHhhC
Confidence 667888 56778999999999999999877763 4 2456778899987655443
No 297
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=30.07 E-value=49 Score=22.52 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=20.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHH
Q 029207 2 KLTVKTLKGSHFEIRVQPSDTVMAVK 27 (197)
Q Consensus 2 ~I~Vk~~~g~~~~iev~~~~TV~~LK 27 (197)
+|+|...+|+.+.|++....||.+.=
T Consensus 8 ~V~~~~~~g~~~~v~~~~g~tLL~aa 33 (108)
T 2bt6_A 8 TVHFINRDGETLTTKGKIGDSLLDVV 33 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHH
T ss_pred EEEEECCCCCEEEEEECCCChHHHHH
Confidence 57777678988899999999987754
No 298
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=30.04 E-value=92 Score=20.83 Aligned_cols=34 Identities=12% Similarity=0.087 Sum_probs=29.4
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEE
Q 029207 10 GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLL 46 (197)
Q Consensus 10 g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrL 46 (197)
.+.+.+.|+...+=.++|+.|+..++ +.+....-
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~---VkV~~VNT 55 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYD---VTVEQVNT 55 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHC---CCEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhC---CCceEEEe
Confidence 45789999999999999999999999 77776644
No 299
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=29.15 E-value=67 Score=21.54 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=21.6
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHH
Q 029207 2 KLTVKTLKGSHFEIRVQPSDTVMAVKK 28 (197)
Q Consensus 2 ~I~Vk~~~g~~~~iev~~~~TV~~LK~ 28 (197)
+|+|...+|+...+++.+..|+.+.-.
T Consensus 5 ~v~~~~~~g~~~~~~~~~g~tlL~a~~ 31 (103)
T 2wlb_A 5 KVFFVTPEGREIMIEGNEGDSILDLAH 31 (103)
T ss_dssp EEEEECTTCCEEEEEECTTCBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHH
Confidence 567776788888999999999987654
No 300
>1ltr_D ETB-R2, heat-labIle enterotoxin; B subunit, anti-HSV; 3.04A {Escherichia coli} SCOP: b.40.2.1
Probab=28.82 E-value=53 Score=22.51 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=23.6
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHH
Q 029207 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDV 33 (197)
Q Consensus 3 I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~ 33 (197)
+.|...+|-+|.++|..+.-+..-|+.|+..
T Consensus 38 viisf~ngatfqvevpgsqh~~sqk~~~erm 68 (113)
T 1ltr_D 38 VIITFKSGATFQVEVPGSQHIDSQKKAIERM 68 (113)
T ss_dssp EEEECTTSCEEEECCCSTTSCSHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 4456668999999999888777777766654
No 301
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=28.20 E-value=32 Score=25.64 Aligned_cols=49 Identities=12% Similarity=0.172 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHhCCCCCCC--CCeEEE--eCCeecCCCCcccccccCCCCeEEEEec
Q 029207 21 DTVMAVKKNIEDVQGKDNYPC--GQQLLI--HNGKVLKDETTLADNKVSEDGFLVVMLS 75 (197)
Q Consensus 21 ~TV~~LK~~I~~~~g~~~~p~--~~qrLi--~~Gk~L~D~~tL~~~~I~~~~~I~l~~~ 75 (197)
.+..+|+.+....++ ++. ...+|+ ..|..++|+.-+..+. + +++.+++.
T Consensus 82 ~SL~EL~~K~~~kL~---l~~~~~~~~LvLeeDGTeVddEeYF~tLp--~-nT~LmvL~ 134 (145)
T 1ibx_B 82 SCLEDLRSKACDILA---IDKSLTPVTLVLAEDGTIVDDDDYFLCLP--S-NTKFVALA 134 (145)
T ss_dssp SSHHHHHHHHHHHHT---CSCTTSCCEEEETTTCCBCSSHHHHHHSC--S-SCBEEEEC
T ss_pred CCHHHHHHHHHHHhc---CCCCccccEEEEeeCCcEEechhHhhcCC--C-CCEEEEEC
Confidence 489999999999999 754 355554 4688888776555543 3 44444443
No 302
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=27.19 E-value=85 Score=21.11 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=22.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHH
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKK 28 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~ 28 (197)
.+|+|...+|....|++....||.+.-.
T Consensus 1 ~~v~~~~~~g~~~~~~~~~g~tlL~aa~ 28 (106)
T 1uwm_A 1 AKIIFIEHNGTRHEVEAKPGLTVMEAAR 28 (106)
T ss_dssp CEEEEECTTCCEEEEECCTTSBHHHHHH
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHH
Confidence 3688877789888999999999987543
No 303
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=27.00 E-value=26 Score=26.24 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=22.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCC---CHHHHHHH
Q 029207 1 MKLTVKTLKGSHFEIRVQPSD---TVMAVKKN 29 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~---TV~~LK~~ 29 (197)
|+|.|. .+|+.+..++..+. |+.+|.++
T Consensus 30 ~~I~i~-~~~~~~~a~L~D~~aP~Ta~~f~~~ 60 (153)
T 2nnz_A 30 MRLRIR-FESAECEVELYEEWAPETVRAIADA 60 (153)
T ss_dssp CCEEEE-ETTEEEEECCCTTSCHHHHHHHHHT
T ss_pred eEEEEE-ECCEEEEEEEcCCCCHHHHHHHHHh
Confidence 677777 56788999999898 99998875
No 304
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.75 E-value=1.2e+02 Score=20.40 Aligned_cols=35 Identities=11% Similarity=0.179 Sum_probs=29.8
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE
Q 029207 10 GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI 47 (197)
Q Consensus 10 g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi 47 (197)
...+.+.|+...+=.++|+.|+..++ +.+...+-+
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~---VkV~~VNTl 57 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFN---VKVEKVNTL 57 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTT---CCEEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcC---CCceEEEEe
Confidence 46789999999999999999999999 777766543
No 305
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=25.96 E-value=63 Score=21.98 Aligned_cols=26 Identities=12% Similarity=0.239 Sum_probs=20.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHH
Q 029207 2 KLTVKTLKGSHFEIRVQPSDTVMAVK 27 (197)
Q Consensus 2 ~I~Vk~~~g~~~~iev~~~~TV~~LK 27 (197)
+|+|...+|+.+.|++....|+.+.=
T Consensus 7 ~v~~~~~~g~~~~~~~~~g~tlL~aa 32 (109)
T 2y5c_A 7 NVVFVDRSGQRIPVSGRVGDNVLHLA 32 (109)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHH
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHH
Confidence 56676678998889999999998754
No 306
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=25.73 E-value=1.6e+02 Score=20.04 Aligned_cols=44 Identities=16% Similarity=0.074 Sum_probs=34.6
Q ss_pred EEEEe-CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCee
Q 029207 3 LTVKT-LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKV 52 (197)
Q Consensus 3 I~Vk~-~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk~ 52 (197)
|.||. ..|+++.|.+..-....+|..++...+| ..+-|.|-...
T Consensus 5 vRIKfE~~gEKRIi~f~RPvkf~dl~qkv~~afG------q~ldl~y~nnE 49 (94)
T 2jrh_A 5 VRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFG------QPLDLHYMNNE 49 (94)
T ss_dssp EEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHC------SSEEEEEECSS
T ss_pred eEEEEEecCceEEEecCCCccHHHHHHHHHHHhC------CeeeeEEecce
Confidence 34443 4788999999999999999999999999 45667665543
No 307
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=25.56 E-value=89 Score=21.00 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=22.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHH
Q 029207 2 KLTVKTLKGSHFEIRVQPSDTVMAVKK 28 (197)
Q Consensus 2 ~I~Vk~~~g~~~~iev~~~~TV~~LK~ 28 (197)
+|+|...+|....|++....||.+.-.
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLeaa~ 28 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQAAV 28 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHH
Confidence 578877889888999999999987643
No 308
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=25.28 E-value=85 Score=26.88 Aligned_cols=60 Identities=13% Similarity=0.041 Sum_probs=40.4
Q ss_pred EEEEe------CCCcEEEEEeCCCCCHHHHHHHHH--HHhCCCCCCCCCeEEE--e--CC--eecCCCCccccc
Q 029207 3 LTVKT------LKGSHFEIRVQPSDTVMAVKKNIE--DVQGKDNYPCGQQLLI--H--NG--KVLKDETTLADN 62 (197)
Q Consensus 3 I~Vk~------~~g~~~~iev~~~~TV~~LK~~I~--~~~g~~~~p~~~qrLi--~--~G--k~L~D~~tL~~~ 62 (197)
++|+. ++|....|.++.+.||+++-..|. .+.|.+....+..-|. + .| ..|+.+++|.+.
T Consensus 24 ~~~~~~~~~~~~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~v 97 (392)
T 4eku_A 24 LKVCFYSNSFNPGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGEV 97 (392)
T ss_dssp EEEEECCSSSCGGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHHH
T ss_pred EEEEecccccCCCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHHHH
Confidence 45666 677777899999999999999998 4566211123344443 3 23 467888888774
No 309
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=24.98 E-value=33 Score=28.55 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=23.8
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHH----HHhcCCHHHHHHHhhC
Q 029207 153 LEQTIQQIMDMGGGTWDKETVTRAL----QAAYNNPERAVDYLYS 193 (197)
Q Consensus 153 ~~~~i~~l~~MG~~~~~~~~~~~aL----~~~~~N~~~A~EyL~~ 193 (197)
.+..|+-|.++| ++++++.++- ...-.|++.-++||.+
T Consensus 19 ~~~~v~~L~s~G---l~~~~~~~~~p~l~~~s~~~~~~vl~fL~~ 60 (343)
T 3mva_O 19 NEDLLKNLLTMG---VDIDMARKRQPGVFHRMITNEQDLKMFLLS 60 (343)
T ss_dssp -CCHHHHHHHHT---CCHHHHHHHCGGGGGCSCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHcC---CCHHHHHHhCchhhccCcccHHHHHHHHHH
Confidence 356777777788 8877766541 1233477777777754
No 310
>2ysk_A Hypothetical protein TTHA1432; conserved hypothetical, NPPSFA, national project on protein structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=24.79 E-value=66 Score=23.51 Aligned_cols=27 Identities=26% Similarity=0.387 Sum_probs=22.7
Q ss_pred chHHHHHHHHH-cCCCCC-CHHHHHHHHHHhc
Q 029207 152 DLEQTIQQIMD-MGGGTW-DKETVTRALQAAY 181 (197)
Q Consensus 152 ~~~~~i~~l~~-MG~~~~-~~~~~~~aL~~~~ 181 (197)
++++.|+++++ +| | +|+++.+++|+..
T Consensus 15 ~~~~fl~~V~~~~~---~~~~~~A~~~~raVL 43 (145)
T 2ysk_A 15 KTHAWLKAIMEELG---TEDRHKAYLALRAVL 43 (145)
T ss_dssp HHHHHHHHHHHHHT---CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---CCCHHHHHHHHHHHH
Confidence 46788889888 78 8 9999999999854
No 311
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=24.79 E-value=98 Score=18.99 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=24.3
Q ss_pred CCchHHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 029207 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180 (197)
Q Consensus 150 g~~~~~~i~~l~~MG~~~~~~~~~~~aL~~~ 180 (197)
.+..+..|+=|.+=| .+.+++..||+-+
T Consensus 27 ~sp~~~K~~FL~sKG---Lt~~EI~~Al~rs 54 (54)
T 3ff5_A 27 QSPLATRRAFLKKKG---LTDEEIDLAFQQS 54 (54)
T ss_dssp GSCHHHHHHHHHHTT---CCHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHcC---CCHHHHHHHHHcC
Confidence 445789999999999 9999999999853
No 312
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=24.61 E-value=1.2e+02 Score=19.63 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=27.7
Q ss_pred CCCchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCC
Q 029207 149 AGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNN 183 (197)
Q Consensus 149 ~g~~~~~~i~~l~~MG~~~~~~~~~~~aL~~~~~N 183 (197)
..+.+++.|+-|..=| -..+++..||+.+..+
T Consensus 31 ~~sp~~~K~~FL~sKG---Lt~eEI~~Al~ra~~~ 62 (70)
T 2w84_A 31 RQSPLATRRAFLKKKG---LTDEEIDMAFQQSGTA 62 (70)
T ss_dssp GGSCHHHHHHHHHHTT---CCHHHHHHHHHHHTCC
T ss_pred hhCCHHHHHHHHHHcC---CCHHHHHHHHHHccCC
Confidence 3445889999999999 9999999999998654
No 313
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=24.32 E-value=71 Score=26.20 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=24.4
Q ss_pred CEEEEEeCCCcEEEEEeCC--CCCHHHHH
Q 029207 1 MKLTVKTLKGSHFEIRVQP--SDTVMAVK 27 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~--~~TV~~LK 27 (197)
++|.|..++|....|+|+. +.|+.+|-
T Consensus 6 ~~i~V~l~dg~~~~~~i~~~~~tt~~el~ 34 (322)
T 4dxa_B 6 EKVRIYRMDGSYRSVELKHGNNTTVQQIM 34 (322)
T ss_dssp CEEEEECTTSCEEEEECTTGGGCCHHHHH
T ss_pred eEEEEEEECCcEEEEEEcCCCCCcHHHHH
Confidence 4789999999999999998 89999994
No 314
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=24.00 E-value=1.3e+02 Score=22.81 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.4
Q ss_pred cEE-EEEeCCCCCHHHHHHHHHHHhC
Q 029207 11 SHF-EIRVQPSDTVMAVKKNIEDVQG 35 (197)
Q Consensus 11 ~~~-~iev~~~~TV~~LK~~I~~~~g 35 (197)
..+ .|.|..+.|..+|...|...+|
T Consensus 21 ~iWRri~Vp~~~TL~~LH~vIq~afg 46 (188)
T 2i1s_A 21 QIWRRIQVPENYTFLDLHKAIQAVMD 46 (188)
T ss_dssp CEEEEEEEETTCBHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhC
Confidence 444 5899999999999999999999
No 315
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=23.78 E-value=34 Score=27.86 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHhcCCHHHHHHHh
Q 029207 168 WDKETVTRALQAAYNNPERAVDYL 191 (197)
Q Consensus 168 ~~~~~~~~aL~~~~~N~~~A~EyL 191 (197)
|+|+.+.+||+...+|..+|.+.|
T Consensus 268 ~e~~~i~~~l~~~~gn~~~aA~~L 291 (304)
T 1ojl_A 268 VEKEVILAALEKTGGNKTEAARQL 291 (304)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 568888999999999999999877
No 316
>1b44_D ETB-POL, protein (B-POL subunit of heat-labIle enterotoxin); B subunit, heat-labIle enterotoxin anti-HSV; 3.30A {Escherichia coli} SCOP: b.40.2.1
Probab=22.62 E-value=64 Score=22.59 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=22.9
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHH
Q 029207 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDV 33 (197)
Q Consensus 3 I~Vk~~~g~~~~iev~~~~TV~~LK~~I~~~ 33 (197)
+.|...+|-+|.++|..+.-+..-|+.|+..
T Consensus 38 viisf~ngatfqvevpgsqh~~sqk~~~erm 68 (129)
T 1b44_D 38 VIITFKSGATFQVEVPGSQHIDSQKKAIERM 68 (129)
T ss_dssp EEEECTTSCEEEECCCCTTSCSTHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 4556668999999999887766666666544
No 317
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=22.57 E-value=43 Score=21.67 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=32.3
Q ss_pred CCchHHHHHHHHHcC--CCCCCHHHHHHHHHHhcCCHHHHHHHhhCc
Q 029207 150 GNDLEQTIQQIMDMG--GGTWDKETVTRALQAAYNNPERAVDYLYSI 194 (197)
Q Consensus 150 g~~~~~~i~~l~~MG--~~~~~~~~~~~aL~~~~~N~~~A~EyL~~~ 194 (197)
|+..|+....++.+- .++|.--++..||.-...||....+|+-+|
T Consensus 6 ~e~~ee~~~~~m~dPEi~~im~DP~~~~~lq~~~~NP~~~~k~~~nP 52 (71)
T 2llw_A 6 NETPEETYQRAMKDPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNP 52 (71)
T ss_dssp CSCHHHHHHHHHHSHHHHHHHTCTHHHHHHHHHHHCHHHHHHHHHSH
T ss_pred CCCcHHHHHHHhcCHHHHHHhCCHHHHHHHHHHHHCHHHHHHHHhCH
Confidence 445577777777631 012556688889998999999999999774
No 318
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=22.34 E-value=56 Score=27.14 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=25.4
Q ss_pred hHHHHHHHH----HcCCCCCCHHHHHHHHHH-------hcCCHHHHHHHhhC
Q 029207 153 LEQTIQQIM----DMGGGTWDKETVTRALQA-------AYNNPERAVDYLYS 193 (197)
Q Consensus 153 ~~~~i~~l~----~MG~~~~~~~~~~~aL~~-------~~~N~~~A~EyL~~ 193 (197)
.++.+..++ ++| |+++++.++++. +-.+...-+|||.+
T Consensus 236 l~~~~~~l~e~~~~lG---~s~~ev~~~v~~~P~il~~s~~~l~~k~~fl~~ 284 (343)
T 3mva_O 236 ARRSYANIKEKLFSLG---CTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLME 284 (343)
T ss_dssp HHHHHHHHHHHHHTTT---CCHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcC---CCHHHHHHHHHhCCchhcccHHHHHHHHHHHHH
Confidence 455565555 699 999999888773 22345566677765
No 319
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=21.83 E-value=1.1e+02 Score=25.13 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHhcCCHHHHHHHhh
Q 029207 168 WDKETVTRALQAAYNNPERAVDYLY 192 (197)
Q Consensus 168 ~~~~~~~~aL~~~~~N~~~A~EyL~ 192 (197)
.+.....|=|||..+|+++|.+-|.
T Consensus 59 ~dD~~LLRFLRArkfdv~kA~~mL~ 83 (320)
T 3q8g_A 59 LDDSTLLRFLRARKFDINASVEMFV 83 (320)
T ss_dssp CSHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5778899999999999999998764
No 320
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=21.31 E-value=2.2e+02 Score=19.93 Aligned_cols=43 Identities=16% Similarity=0.090 Sum_probs=33.2
Q ss_pred EEEEe-CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe
Q 029207 3 LTVKT-LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGK 51 (197)
Q Consensus 3 I~Vk~-~~g~~~~iev~~~~TV~~LK~~I~~~~g~~~~p~~~qrLi~~Gk 51 (197)
|.||. ..|+++.|++..-....+|..++...+| ..+-|.|-..
T Consensus 32 vRIKfE~~gEKRIiqf~RPvkf~dl~qkv~~afG------q~ldl~y~nn 75 (111)
T 2c60_A 32 VRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFG------QPLDLHYMNN 75 (111)
T ss_dssp EEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHS------SCCEEEEECS
T ss_pred eEEEEEecCceEEEecCCCccHHHHHHHHHHHhC------CeeeeEEecc
Confidence 34443 4688899999999999999999999999 3455666543
No 321
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=21.20 E-value=1.8e+02 Score=20.09 Aligned_cols=28 Identities=4% Similarity=-0.143 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 029207 21 DTVMAVKKNIEDVQGKDNYPCGQQLLIHNG 50 (197)
Q Consensus 21 ~TV~~LK~~I~~~~g~~~~p~~~qrLi~~G 50 (197)
.+..+|+.+|...+.. +......|.|..
T Consensus 42 ~s~~~L~~~V~~lFp~--l~~~~f~l~Y~D 69 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPA--LRPGGFQAHYRA 69 (102)
T ss_dssp CHHHHHHHHHHHHCTT--SCSSCEEEEEEC
T ss_pred ccHHHHHHHHHHHccc--cCCCcEEEEEEC
Confidence 4799999999999742 445567787764
No 322
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=21.09 E-value=1.1e+02 Score=20.03 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=20.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHH
Q 029207 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKN 29 (197)
Q Consensus 1 M~I~Vk~~~g~~~~iev~~~~TV~~LK~~ 29 (197)
++|+|+..+| ...+++.+..|+.+.-..
T Consensus 1 ~~v~~~~~~g-~~~~~~~~g~tlL~a~~~ 28 (94)
T 1awd_A 1 YKVTLKTPSG-EETIECPEDTYILDAAEE 28 (94)
T ss_dssp CEEEEEETTE-EEEEECCTTSCHHHHHHH
T ss_pred CEEEEEeCCC-cEEEEECCCCcHHHHHHH
Confidence 3677876566 678899999999886543
No 323
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=20.86 E-value=1.2e+02 Score=19.80 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=19.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHH
Q 029207 2 KLTVKTLKGSHFEIRVQPSDTVMAVKK 28 (197)
Q Consensus 2 ~I~Vk~~~g~~~~iev~~~~TV~~LK~ 28 (197)
+|+|...+| ...+++.+..||.+.-.
T Consensus 3 ~v~~~~~~g-~~~~~~~~g~tlL~a~~ 28 (95)
T 1frr_A 3 KTVLKTPSG-EFTLDVPEGTTILDAAE 28 (95)
T ss_dssp EEEEEETTE-EEEEEECTTCCHHHHHH
T ss_pred EEEEEeCCC-cEEEEeCCCCcHHHHHH
Confidence 577776677 67888999999987654
No 324
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=20.63 E-value=1e+02 Score=21.89 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=21.7
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHH
Q 029207 2 KLTVKTLKGSHFEIRVQPSDTVMAVK 27 (197)
Q Consensus 2 ~I~Vk~~~g~~~~iev~~~~TV~~LK 27 (197)
+|+|...+|...+|++....||.+.-
T Consensus 23 ~Vt~~~~~G~~~~v~~~~G~tLL~aa 48 (126)
T 3hui_A 23 KINFVDHTGETRTVEVEEGATVMEAA 48 (126)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 67888788988899999999998754
No 325
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=20.54 E-value=96 Score=22.10 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=28.3
Q ss_pred CCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecc
Q 029207 39 YPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (197)
Q Consensus 39 ~p~~~qrLi~~Gk~L~D~~tL~~~~I~~~~~I~l~~~~ 76 (197)
..+--.||.|.|++.+|+..=+.|.+..+ .+.+-+.|
T Consensus 58 ~~PYyLRL~lP~~vved~~~~A~YD~d~g-~~~v~lpK 94 (115)
T 3eud_A 58 LSPYYLRLRFPHELIDDERSTAQYDSKDE-CINVKVAK 94 (115)
T ss_dssp ETTEEEEEECSSCEECSTTCEEEEETTTT-EEEEEEEE
T ss_pred cCCeEEEEecCcceecCCCcceEEeCCCc-EEEEEEcC
Confidence 45677899999999999998889998764 44444444
No 326
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=20.30 E-value=20 Score=23.10 Aligned_cols=29 Identities=28% Similarity=0.271 Sum_probs=20.7
Q ss_pred CCchHHHHHHHH-HcCCCCCCHHHHHHHHHHhcC
Q 029207 150 GNDLEQTIQQIM-DMGGGTWDKETVTRALQAAYN 182 (197)
Q Consensus 150 g~~~~~~i~~l~-~MG~~~~~~~~~~~aL~~~~~ 182 (197)
+.+. +.|..++ +.| |+.+-|..||+-+..
T Consensus 20 ~~e~-~~i~~w~~~~~---~~~elI~~A~~~a~~ 49 (78)
T 2zc2_A 20 PFEL-EDLQKTVSDDK---TDPDLVRSALREAVF 49 (78)
T ss_dssp HHHH-HHHHHHHTTTC---CCHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 3343 3455555 579 999999999998853
Done!