Query 029208
Match_columns 197
No_of_seqs 271 out of 1750
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 09:14:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029208.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029208hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 99.9 1.2E-24 2.7E-29 162.8 10.8 102 93-196 43-145 (150)
2 cd02954 DIM1 Dim1 family; Dim1 99.9 1.1E-23 2.4E-28 152.8 10.7 91 100-191 2-93 (114)
3 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 1E-22 2.2E-27 145.3 12.9 97 98-195 6-104 (104)
4 cd02999 PDI_a_ERp44_like PDIa 99.9 7.2E-23 1.6E-27 145.9 11.8 93 101-195 7-100 (100)
5 cd02985 TRX_CDSP32 TRX family, 99.9 1.9E-22 4.1E-27 144.4 13.8 92 98-190 1-95 (103)
6 KOG0907 Thioredoxin [Posttrans 99.9 2.3E-22 5E-27 144.5 12.4 86 108-195 17-102 (106)
7 PHA02278 thioredoxin-like prot 99.9 3E-22 6.5E-27 143.5 12.7 95 98-195 2-101 (103)
8 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 2.7E-22 5.9E-27 142.6 12.1 98 94-195 3-101 (101)
9 cd03006 PDI_a_EFP1_N PDIa fami 99.9 4.1E-22 8.8E-27 145.0 12.3 101 93-195 10-113 (113)
10 cd02956 ybbN ybbN protein fami 99.9 6.3E-22 1.4E-26 139.2 12.2 94 102-196 2-96 (96)
11 PF00085 Thioredoxin: Thioredo 99.9 8E-22 1.7E-26 139.4 12.8 99 96-196 2-101 (103)
12 PLN00410 U5 snRNP protein, DIM 99.9 9.2E-22 2E-26 147.9 12.8 102 94-195 5-116 (142)
13 cd03065 PDI_b_Calsequestrin_N 99.9 1.4E-21 3E-26 143.5 12.1 101 93-196 9-116 (120)
14 cd02996 PDI_a_ERp44 PDIa famil 99.9 2.5E-21 5.4E-26 139.3 12.5 96 98-195 6-108 (108)
15 cd02948 TRX_NDPK TRX domain, T 99.9 5.8E-21 1.3E-25 136.4 13.3 96 96-196 3-100 (102)
16 COG3118 Thioredoxin domain-con 99.9 3.1E-21 6.8E-26 158.6 11.1 103 92-196 23-127 (304)
17 cd02989 Phd_like_TxnDC9 Phosdu 99.9 1.6E-20 3.5E-25 136.7 13.0 91 92-185 4-94 (113)
18 cd02963 TRX_DnaJ TRX domain, D 99.9 9.5E-21 2E-25 137.3 11.4 97 99-196 10-109 (111)
19 cd03002 PDI_a_MPD1_like PDI fa 99.8 1.4E-20 3.1E-25 135.0 12.0 98 98-196 5-109 (109)
20 cd02986 DLP Dim1 family, Dim1- 99.8 1.7E-20 3.7E-25 135.4 11.9 84 100-183 2-86 (114)
21 cd03001 PDI_a_P5 PDIa family, 99.8 5.4E-20 1.2E-24 130.5 12.7 97 98-195 5-102 (103)
22 cd02994 PDI_a_TMX PDIa family, 99.8 4.8E-20 1E-24 130.8 12.3 96 94-196 3-100 (101)
23 cd03005 PDI_a_ERp46 PDIa famil 99.8 5.4E-20 1.2E-24 130.2 12.5 94 98-195 5-102 (102)
24 PRK09381 trxA thioredoxin; Pro 99.8 8.4E-20 1.8E-24 131.4 13.2 101 93-196 4-105 (109)
25 PTZ00051 thioredoxin; Provisio 99.8 1.1E-19 2.3E-24 128.1 13.3 95 94-192 2-96 (98)
26 cd02957 Phd_like Phosducin (Ph 99.8 3.5E-20 7.7E-25 134.6 11.0 91 93-186 5-96 (113)
27 cd02962 TMX2 TMX2 family; comp 99.8 1.6E-19 3.5E-24 137.7 14.7 89 95-184 30-126 (152)
28 cd02984 TRX_PICOT TRX domain, 99.8 1.6E-19 3.4E-24 126.9 13.2 95 99-195 1-96 (97)
29 PRK10996 thioredoxin 2; Provis 99.8 1.2E-19 2.6E-24 136.7 13.1 96 98-196 40-136 (139)
30 cd02965 HyaE HyaE family; HyaE 99.8 9.3E-20 2E-24 131.5 11.2 91 99-192 16-109 (111)
31 cd02993 PDI_a_APS_reductase PD 99.8 1.9E-19 4.1E-24 129.9 12.0 99 97-195 5-109 (109)
32 cd02997 PDI_a_PDIR PDIa family 99.8 3.9E-19 8.5E-24 126.1 12.6 94 99-195 6-104 (104)
33 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 2.4E-19 5.1E-24 127.1 11.2 97 97-195 4-104 (104)
34 PTZ00443 Thioredoxin domain-co 99.8 4.2E-19 9.1E-24 143.4 13.1 101 95-196 32-136 (224)
35 cd02998 PDI_a_ERp38 PDIa famil 99.8 3.6E-19 7.8E-24 126.3 10.9 96 99-195 6-105 (105)
36 TIGR01068 thioredoxin thioredo 99.8 1.1E-18 2.4E-23 122.6 12.7 96 99-196 2-98 (101)
37 TIGR01126 pdi_dom protein disu 99.8 6.4E-19 1.4E-23 124.3 11.3 95 99-196 2-99 (102)
38 KOG0908 Thioredoxin-like prote 99.8 2E-19 4.3E-24 144.1 9.6 95 93-188 2-96 (288)
39 cd02950 TxlA TRX-like protein 99.8 6.2E-19 1.3E-23 133.3 11.7 93 102-196 12-107 (142)
40 cd02953 DsbDgamma DsbD gamma f 99.8 3.8E-19 8.3E-24 127.0 9.8 94 101-196 2-104 (104)
41 cd02949 TRX_NTR TRX domain, no 99.8 2.3E-18 5E-23 121.6 13.2 92 103-196 5-97 (97)
42 cd02987 Phd_like_Phd Phosducin 99.8 1.5E-18 3.3E-23 135.4 12.4 93 91-185 61-154 (175)
43 cd02961 PDI_a_family Protein D 99.8 2E-18 4.4E-23 120.5 11.2 95 99-195 4-101 (101)
44 cd03000 PDI_a_TMX3 PDIa family 99.8 1.6E-18 3.5E-23 123.8 9.8 91 101-196 7-101 (104)
45 cd02975 PfPDO_like_N Pyrococcu 99.8 5.1E-18 1.1E-22 123.5 10.9 92 103-196 15-107 (113)
46 KOG0190 Protein disulfide isom 99.8 1.5E-18 3.3E-23 152.4 8.4 126 65-196 341-470 (493)
47 PTZ00102 disulphide isomerase; 99.8 5.6E-18 1.2E-22 150.3 11.7 125 67-196 335-462 (477)
48 cd02947 TRX_family TRX family; 99.7 2.5E-17 5.4E-22 112.8 11.6 92 102-196 2-93 (93)
49 cd02951 SoxW SoxW family; SoxW 99.7 2.2E-17 4.9E-22 121.6 11.3 94 101-196 4-116 (125)
50 TIGR00424 APS_reduc 5'-adenyly 99.7 2.5E-17 5.5E-22 145.0 13.1 103 94-196 352-460 (463)
51 TIGR01295 PedC_BrcD bacterioci 99.7 5.4E-17 1.2E-21 119.6 12.8 95 98-196 11-121 (122)
52 KOG0190 Protein disulfide isom 99.7 6.8E-18 1.5E-22 148.4 9.0 102 92-196 24-129 (493)
53 cd02952 TRP14_like Human TRX-r 99.7 2.8E-17 6.1E-22 120.4 10.4 99 95-195 4-118 (119)
54 cd03007 PDI_a_ERp29_N PDIa fam 99.7 3.1E-17 6.6E-22 119.4 9.7 95 97-196 5-113 (116)
55 PLN02309 5'-adenylylsulfate re 99.7 1E-16 2.2E-21 141.2 13.5 101 96-196 348-454 (457)
56 cd02992 PDI_a_QSOX PDIa family 99.7 8E-17 1.7E-21 117.3 10.5 79 97-176 5-89 (114)
57 cd02988 Phd_like_VIAF Phosduci 99.7 1.4E-16 3E-21 126.1 12.7 89 92-185 82-171 (192)
58 TIGR01130 ER_PDI_fam protein d 99.7 2.2E-16 4.8E-21 138.9 12.6 99 96-196 4-106 (462)
59 PTZ00102 disulphide isomerase; 99.7 4.4E-16 9.5E-21 138.1 12.2 98 95-196 34-135 (477)
60 PRK00293 dipZ thiol:disulfide 99.7 8.2E-16 1.8E-20 139.7 12.1 105 92-196 452-567 (571)
61 PTZ00062 glutaredoxin; Provisi 99.6 1.8E-15 3.9E-20 120.5 11.3 81 98-188 4-84 (204)
62 KOG4277 Uncharacterized conser 99.6 3.8E-16 8.1E-21 128.6 7.0 92 102-195 32-128 (468)
63 TIGR01130 ER_PDI_fam protein d 99.6 1E-15 2.2E-20 134.7 10.1 123 67-196 324-451 (462)
64 cd02982 PDI_b'_family Protein 99.6 5.1E-15 1.1E-19 104.9 9.8 85 112-196 12-100 (103)
65 TIGR02187 GlrX_arch Glutaredox 99.6 8.2E-15 1.8E-19 117.9 11.9 86 111-196 18-108 (215)
66 TIGR00411 redox_disulf_1 small 99.6 1E-14 2.2E-19 99.1 9.7 77 115-196 2-79 (82)
67 cd02959 ERp19 Endoplasmic reti 99.6 3.5E-15 7.5E-20 109.2 7.1 73 111-183 18-94 (117)
68 TIGR02740 TraF-like TraF-like 99.6 5.9E-14 1.3E-18 116.7 13.1 90 105-195 159-260 (271)
69 TIGR02187 GlrX_arch Glutaredox 99.6 4.2E-14 9E-19 113.8 11.3 89 104-196 125-213 (215)
70 PHA02125 thioredoxin-like prot 99.5 7E-14 1.5E-18 94.3 9.6 72 116-196 2-74 (75)
71 cd02955 SSP411 TRX domain, SSP 99.5 8.9E-14 1.9E-18 102.7 10.3 84 100-185 5-100 (124)
72 cd03010 TlpA_like_DsbE TlpA-li 99.5 1.4E-13 3E-18 101.4 10.9 82 109-191 22-126 (127)
73 PRK14018 trifunctional thiored 99.5 9.7E-14 2.1E-18 124.0 11.8 86 111-196 55-170 (521)
74 KOG0912 Thiol-disulfide isomer 99.5 3.3E-14 7.2E-19 117.2 7.8 95 100-196 3-103 (375)
75 PRK15412 thiol:disulfide inter 99.5 1.9E-13 4.1E-18 107.5 11.6 84 111-196 67-173 (185)
76 TIGR02738 TrbB type-F conjugat 99.5 1.8E-13 3.9E-18 104.6 10.8 84 112-196 50-150 (153)
77 PF13098 Thioredoxin_2: Thiore 99.5 6.1E-14 1.3E-18 100.9 7.6 85 111-195 4-112 (112)
78 cd03008 TryX_like_RdCVF Trypar 99.5 2.4E-13 5.2E-18 103.0 10.2 73 107-179 20-126 (146)
79 COG4232 Thiol:disulfide interc 99.5 1.2E-13 2.5E-18 123.0 8.9 102 95-196 457-565 (569)
80 TIGR00412 redox_disulf_2 small 99.5 3.6E-13 7.8E-18 91.1 8.9 73 116-196 2-76 (76)
81 TIGR00385 dsbE periplasmic pro 99.5 4.8E-13 1.1E-17 104.1 10.5 84 111-196 62-168 (173)
82 KOG0191 Thioredoxin/protein di 99.5 1.9E-13 4E-18 118.9 8.8 84 111-195 46-130 (383)
83 cd03009 TryX_like_TryX_NRX Try 99.5 4.8E-13 1E-17 99.1 9.6 71 109-179 15-113 (131)
84 PF13905 Thioredoxin_8: Thiore 99.5 7E-13 1.5E-17 92.7 9.8 65 112-176 1-93 (95)
85 cd02964 TryX_like_family Trypa 99.4 6.2E-13 1.3E-17 98.9 9.6 72 108-179 13-113 (132)
86 PRK03147 thiol-disulfide oxido 99.4 1.6E-12 3.4E-17 100.4 11.7 87 110-196 59-169 (173)
87 cd02973 TRX_GRX_like Thioredox 99.4 5.6E-13 1.2E-17 87.5 7.6 56 116-171 3-58 (67)
88 cd02966 TlpA_like_family TlpA- 99.4 1.8E-12 3.9E-17 91.8 10.2 74 111-184 18-116 (116)
89 cd03026 AhpF_NTD_C TRX-GRX-lik 99.4 3.7E-12 8E-17 88.8 10.6 82 105-191 5-86 (89)
90 cd03011 TlpA_like_ScsD_MtbDsbE 99.4 2.6E-12 5.7E-17 93.7 10.1 81 111-193 19-120 (123)
91 PLN02919 haloacid dehalogenase 99.4 2.9E-12 6.2E-17 123.6 11.5 87 110-196 418-533 (1057)
92 cd03012 TlpA_like_DipZ_like Tl 99.3 1.5E-11 3.2E-16 90.7 10.5 76 110-185 21-125 (126)
93 KOG1731 FAD-dependent sulfhydr 99.3 5.8E-13 1.3E-17 117.7 2.9 81 94-175 40-126 (606)
94 cd02958 UAS UAS family; UAS is 99.3 3.5E-11 7.6E-16 87.3 10.6 85 111-195 16-107 (114)
95 PRK13728 conjugal transfer pro 99.3 3.4E-11 7.4E-16 94.1 11.1 79 116-195 73-167 (181)
96 KOG0191 Thioredoxin/protein di 99.3 1E-11 2.2E-16 108.1 8.8 101 95-196 146-249 (383)
97 PRK11509 hydrogenase-1 operon 99.3 5.5E-11 1.2E-15 88.3 10.9 93 101-196 25-121 (132)
98 cd02967 mauD Methylamine utili 99.2 5E-11 1.1E-15 85.8 9.1 65 112-176 21-106 (114)
99 cd02960 AGR Anterior Gradient 99.2 3.4E-11 7.3E-16 89.3 7.7 86 102-188 11-102 (130)
100 PF08534 Redoxin: Redoxin; In 99.2 1.1E-10 2.5E-15 87.7 10.4 79 109-187 25-136 (146)
101 PF13899 Thioredoxin_7: Thiore 99.2 6.6E-11 1.4E-15 80.9 7.5 63 111-174 16-82 (82)
102 smart00594 UAS UAS domain. 99.2 3.6E-10 7.9E-15 83.1 11.2 86 111-196 26-122 (122)
103 TIGR01626 ytfJ_HI0045 conserve 99.1 2.7E-10 5.8E-15 89.4 9.2 85 109-195 56-176 (184)
104 PTZ00056 glutathione peroxidas 99.1 2.9E-10 6.3E-15 90.5 9.6 88 108-195 35-174 (199)
105 TIGR02661 MauD methylamine deh 99.1 4.8E-10 1E-14 88.5 10.5 84 111-196 73-176 (189)
106 PLN02399 phospholipid hydroper 99.1 4E-10 8.7E-15 91.8 10.2 89 108-196 95-231 (236)
107 cd00340 GSH_Peroxidase Glutath 99.1 4.7E-10 1E-14 85.4 9.1 88 107-195 17-152 (152)
108 KOG1672 ATP binding protein [P 99.1 4.3E-10 9.2E-15 87.6 8.7 97 85-184 59-155 (211)
109 COG0526 TrxA Thiol-disulfide i 99.1 7.6E-10 1.6E-14 77.5 8.2 72 112-184 32-107 (127)
110 PLN02412 probable glutathione 99.1 1.2E-09 2.5E-14 84.6 9.6 89 108-196 25-161 (167)
111 PF14595 Thioredoxin_9: Thiore 99.0 2.3E-09 5E-14 79.7 8.9 85 101-185 30-117 (129)
112 TIGR02540 gpx7 putative glutat 99.0 2.4E-09 5.2E-14 81.5 9.2 89 107-195 17-149 (153)
113 cd02969 PRX_like1 Peroxiredoxi 99.0 5.6E-09 1.2E-13 80.8 10.7 70 111-180 24-124 (171)
114 PF02114 Phosducin: Phosducin; 99.0 2.1E-09 4.6E-14 89.0 8.6 92 92-185 125-217 (265)
115 KOG0914 Thioredoxin-like prote 99.0 6.7E-10 1.4E-14 88.0 5.0 90 93-183 125-222 (265)
116 TIGR02196 GlrX_YruB Glutaredox 98.9 7.1E-09 1.5E-13 68.1 8.5 69 116-196 2-74 (74)
117 cd01659 TRX_superfamily Thiore 98.9 7.6E-09 1.6E-13 64.6 7.8 60 116-175 1-63 (69)
118 PF13728 TraF: F plasmid trans 98.9 3.7E-08 8E-13 79.4 12.5 91 102-193 110-212 (215)
119 cd03017 PRX_BCP Peroxiredoxin 98.9 1.3E-08 2.8E-13 75.7 9.2 85 111-195 22-139 (140)
120 KOG2501 Thioredoxin, nucleored 98.9 6.6E-09 1.4E-13 78.9 6.8 69 111-179 32-129 (157)
121 cd03014 PRX_Atyp2cys Peroxired 98.8 2.8E-08 6.1E-13 74.4 9.5 77 109-185 23-129 (143)
122 PF00578 AhpC-TSA: AhpC/TSA fa 98.8 2.6E-08 5.6E-13 72.4 8.9 70 109-178 22-121 (124)
123 KOG3414 Component of the U4/U6 98.8 3.9E-08 8.4E-13 71.6 9.5 86 95-180 6-92 (142)
124 PRK00522 tpx lipid hydroperoxi 98.8 6.6E-08 1.4E-12 74.8 11.0 76 108-183 40-148 (167)
125 PF06110 DUF953: Eukaryotic pr 98.8 6.6E-08 1.4E-12 70.7 9.8 80 97-176 2-100 (119)
126 KOG3425 Uncharacterized conser 98.8 4.5E-08 9.8E-13 70.7 8.0 84 97-180 9-110 (128)
127 PTZ00256 glutathione peroxidas 98.8 5.5E-08 1.2E-12 76.3 8.9 88 108-195 36-177 (183)
128 TIGR02200 GlrX_actino Glutared 98.7 3.1E-08 6.7E-13 66.0 6.4 55 116-176 2-61 (77)
129 KOG0913 Thiol-disulfide isomer 98.7 2.8E-09 6.1E-14 85.3 0.1 96 95-196 26-123 (248)
130 cd03015 PRX_Typ2cys Peroxiredo 98.7 1.5E-07 3.2E-12 73.1 9.3 76 110-185 27-139 (173)
131 COG2143 Thioredoxin-related pr 98.7 2.2E-07 4.8E-12 70.2 9.5 84 111-194 41-144 (182)
132 PRK09437 bcp thioredoxin-depen 98.7 1.7E-07 3.6E-12 71.2 8.9 81 110-190 28-144 (154)
133 PF03190 Thioredox_DsbH: Prote 98.7 1.2E-07 2.6E-12 72.9 8.0 80 100-181 27-118 (163)
134 TIGR02739 TraF type-F conjugat 98.7 4.5E-07 9.8E-12 74.7 11.8 90 102-192 140-241 (256)
135 TIGR03137 AhpC peroxiredoxin. 98.6 2.7E-07 5.9E-12 72.7 9.8 74 109-182 28-135 (187)
136 KOG0911 Glutaredoxin-related p 98.6 2.5E-08 5.4E-13 79.5 3.6 94 94-192 3-96 (227)
137 cd03018 PRX_AhpE_like Peroxire 98.6 3.8E-07 8.2E-12 68.5 9.8 76 111-186 26-134 (149)
138 cd02970 PRX_like2 Peroxiredoxi 98.6 3.4E-07 7.3E-12 68.5 9.4 41 113-153 25-67 (149)
139 PF13192 Thioredoxin_3: Thiore 98.6 4.6E-07 1E-11 61.0 9.0 73 117-196 3-76 (76)
140 cd02968 SCO SCO (an acronym fo 98.5 4.5E-07 9.8E-12 67.4 8.4 42 111-152 21-68 (142)
141 cd02971 PRX_family Peroxiredox 98.5 1E-06 2.2E-11 65.3 9.3 77 111-187 21-131 (140)
142 PRK13703 conjugal pilus assemb 98.5 1.9E-06 4.1E-11 70.7 11.4 89 103-192 134-234 (248)
143 cd02991 UAS_ETEA UAS family, E 98.5 3E-06 6.5E-11 61.8 10.9 84 111-196 16-110 (116)
144 PF02966 DIM1: Mitosis protein 98.5 3.9E-06 8.5E-11 61.8 11.3 88 95-182 3-91 (133)
145 PRK10382 alkyl hydroperoxide r 98.5 2E-06 4.3E-11 67.9 10.6 75 108-182 27-135 (187)
146 TIGR02180 GRX_euk Glutaredoxin 98.5 4.7E-07 1E-11 61.3 6.2 54 116-170 1-59 (84)
147 PRK13190 putative peroxiredoxi 98.5 1.1E-06 2.5E-11 70.0 9.2 86 110-195 25-150 (202)
148 PF13848 Thioredoxin_6: Thiore 98.4 7.2E-06 1.6E-10 63.4 11.7 111 84-196 68-183 (184)
149 cd02976 NrdH NrdH-redoxin (Nrd 98.4 2.6E-06 5.7E-11 55.6 7.8 68 116-195 2-73 (73)
150 TIGR03143 AhpF_homolog putativ 98.4 4.3E-06 9.3E-11 76.2 11.4 88 102-195 466-554 (555)
151 PF11009 DUF2847: Protein of u 98.3 1.3E-05 2.9E-10 57.2 10.2 97 95-191 2-104 (105)
152 PRK15000 peroxidase; Provision 98.3 7E-06 1.5E-10 65.4 9.7 75 111-185 33-144 (200)
153 PRK11200 grxA glutaredoxin 1; 98.3 3.7E-06 8E-11 57.6 6.9 55 116-170 3-63 (85)
154 PRK15317 alkyl hydroperoxide r 98.3 1.1E-05 2.5E-10 72.8 11.5 91 100-195 104-194 (517)
155 cd02981 PDI_b_family Protein D 98.2 2.6E-05 5.6E-10 54.2 9.7 93 95-196 2-95 (97)
156 PTZ00137 2-Cys peroxiredoxin; 98.2 1.8E-05 3.9E-10 65.5 10.2 72 111-182 97-204 (261)
157 cd03016 PRX_1cys Peroxiredoxin 98.2 1.5E-05 3.3E-10 63.5 9.6 72 113-184 26-135 (203)
158 PRK10877 protein disulfide iso 98.1 1.1E-05 2.3E-10 65.8 7.2 79 111-196 106-228 (232)
159 cd03020 DsbA_DsbC_DsbG DsbA fa 98.1 8.3E-06 1.8E-10 64.5 6.3 76 112-195 77-197 (197)
160 PRK13599 putative peroxiredoxi 98.1 3.2E-05 6.9E-10 62.4 9.3 71 111-181 27-134 (215)
161 PRK10606 btuE putative glutath 98.1 9.1E-06 2E-10 63.9 5.8 45 107-152 20-66 (183)
162 PRK13189 peroxiredoxin; Provis 98.0 3.4E-05 7.3E-10 62.5 9.0 69 111-179 34-139 (222)
163 TIGR02183 GRXA Glutaredoxin, G 98.0 1.8E-05 3.9E-10 54.4 6.4 55 116-170 2-62 (86)
164 cd02983 P5_C P5 family, C-term 98.0 0.00014 2.9E-09 54.1 11.5 103 92-196 2-112 (130)
165 PTZ00253 tryparedoxin peroxida 98.0 3.8E-05 8.1E-10 61.0 8.9 77 108-184 32-145 (199)
166 PRK11657 dsbG disulfide isomer 98.0 4.1E-05 8.9E-10 63.1 9.4 84 111-196 116-249 (251)
167 cd03023 DsbA_Com1_like DsbA fa 98.0 8.4E-05 1.8E-09 55.4 10.4 37 112-148 5-41 (154)
168 TIGR03140 AhpF alkyl hydropero 98.0 6.8E-05 1.5E-09 67.8 11.4 89 101-194 106-194 (515)
169 cd03419 GRX_GRXh_1_2_like Glut 98.0 3E-05 6.5E-10 52.2 6.4 51 116-169 2-57 (82)
170 PRK13191 putative peroxiredoxi 97.9 6.2E-05 1.3E-09 60.7 8.9 72 111-182 32-140 (215)
171 KOG3171 Conserved phosducin-li 97.9 6.8E-05 1.5E-09 59.7 8.1 84 92-176 138-222 (273)
172 PF01216 Calsequestrin: Calseq 97.9 0.00019 4.2E-09 61.0 11.2 97 95-196 36-141 (383)
173 PF05768 DUF836: Glutaredoxin- 97.8 8.8E-05 1.9E-09 50.4 6.5 79 116-196 2-81 (81)
174 PF00462 Glutaredoxin: Glutare 97.8 9E-05 2E-09 47.1 6.0 51 116-171 1-55 (60)
175 TIGR02190 GlrX-dom Glutaredoxi 97.7 0.00014 3E-09 49.1 6.5 54 112-170 6-62 (79)
176 TIGR03143 AhpF_homolog putativ 97.7 0.00031 6.7E-09 64.1 10.5 98 99-196 353-451 (555)
177 cd02066 GRX_family Glutaredoxi 97.7 0.00016 3.4E-09 46.7 6.1 50 116-170 2-55 (72)
178 KOG3170 Conserved phosducin-li 97.7 0.00023 5E-09 56.1 7.8 82 92-176 91-172 (240)
179 PF07449 HyaE: Hydrogenase-1 e 97.6 0.00015 3.2E-09 52.0 5.5 84 100-187 16-103 (107)
180 TIGR02194 GlrX_NrdH Glutaredox 97.6 0.00029 6.2E-09 46.6 6.3 50 117-171 2-54 (72)
181 cd03072 PDI_b'_ERp44 PDIb' fam 97.5 0.00071 1.5E-08 48.8 8.2 93 100-196 6-105 (111)
182 PHA03050 glutaredoxin; Provisi 97.5 0.00036 7.9E-09 50.2 6.5 54 116-169 15-73 (108)
183 cd03027 GRX_DEP Glutaredoxin ( 97.4 0.00078 1.7E-08 44.5 7.0 49 116-169 3-55 (73)
184 cd03418 GRX_GRXb_1_3_like Glut 97.4 0.00073 1.6E-08 44.6 6.8 50 116-170 2-56 (75)
185 PRK10329 glutaredoxin-like pro 97.4 0.00093 2E-08 45.5 7.3 51 116-171 3-56 (81)
186 TIGR02181 GRX_bact Glutaredoxi 97.4 0.00048 1E-08 46.1 5.8 49 116-169 1-53 (79)
187 PF13462 Thioredoxin_4: Thiore 97.4 0.0025 5.4E-08 48.0 10.2 79 112-196 12-161 (162)
188 PF07912 ERp29_N: ERp29, N-ter 97.4 0.0053 1.2E-07 44.9 11.1 94 99-196 10-116 (126)
189 cd03073 PDI_b'_ERp72_ERp57 PDI 97.4 0.0017 3.6E-08 46.9 8.4 71 125-196 31-108 (111)
190 cd02972 DsbA_family DsbA famil 97.4 0.00096 2.1E-08 45.3 6.8 58 116-173 1-91 (98)
191 TIGR02189 GlrX-like_plant Glut 97.3 0.00086 1.9E-08 47.4 5.9 49 116-169 10-65 (99)
192 cd03029 GRX_hybridPRX5 Glutare 97.2 0.0022 4.7E-08 42.2 6.9 49 116-169 3-54 (72)
193 cd03066 PDI_b_Calsequestrin_mi 97.2 0.0083 1.8E-07 42.3 10.1 94 94-196 2-98 (102)
194 TIGR00365 monothiol glutaredox 97.1 0.0043 9.4E-08 43.6 7.9 60 103-170 5-72 (97)
195 PF13848 Thioredoxin_6: Thiore 97.0 0.0046 1E-07 47.5 8.3 64 129-196 7-72 (184)
196 cd03069 PDI_b_ERp57 PDIb famil 96.9 0.012 2.6E-07 41.7 9.2 92 95-196 3-101 (104)
197 KOG2603 Oligosaccharyltransfer 96.9 0.0065 1.4E-07 51.1 8.8 105 91-196 39-163 (331)
198 COG0695 GrxC Glutaredoxin and 96.8 0.0046 9.9E-08 41.9 6.1 51 116-171 3-59 (80)
199 cd03028 GRX_PICOT_like Glutare 96.8 0.0052 1.1E-07 42.4 6.0 52 113-169 8-67 (90)
200 PRK10638 glutaredoxin 3; Provi 96.7 0.01 2.3E-07 40.1 6.8 50 116-170 4-57 (83)
201 COG1225 Bcp Peroxiredoxin [Pos 96.5 0.025 5.3E-07 43.4 8.4 76 107-182 25-136 (157)
202 PRK10824 glutaredoxin-4; Provi 96.3 0.026 5.6E-07 41.1 7.2 61 102-170 7-75 (115)
203 COG1331 Highly conserved prote 96.3 0.0085 1.8E-07 55.3 5.7 79 99-179 32-122 (667)
204 KOG1752 Glutaredoxin and relat 96.2 0.041 8.8E-07 39.3 8.0 63 102-171 6-73 (104)
205 cd03067 PDI_b_PDIR_N PDIb fami 96.1 0.078 1.7E-06 37.6 8.7 99 94-196 3-109 (112)
206 cd02974 AhpF_NTD_N Alkyl hydro 96.1 0.11 2.4E-06 36.3 9.5 83 101-195 8-90 (94)
207 PRK12759 bifunctional gluaredo 95.8 0.027 5.9E-07 49.7 6.6 51 116-171 4-66 (410)
208 PF13743 Thioredoxin_5: Thiore 95.7 0.061 1.3E-06 41.9 7.5 26 118-143 2-27 (176)
209 cd03013 PRX5_like Peroxiredoxi 95.6 0.024 5.3E-07 43.1 4.8 41 112-152 29-74 (155)
210 cd03019 DsbA_DsbA DsbA family, 95.5 0.03 6.5E-07 42.8 5.1 36 112-147 15-51 (178)
211 PF01323 DSBA: DSBA-like thior 95.4 0.23 4.9E-06 38.4 9.8 35 157-196 159-193 (193)
212 PTZ00062 glutaredoxin; Provisi 95.3 0.11 2.4E-06 41.5 8.0 54 112-170 112-173 (204)
213 PRK10954 periplasmic protein d 94.6 0.053 1.2E-06 43.2 4.3 40 112-151 37-80 (207)
214 COG1651 DsbG Protein-disulfide 94.1 0.18 4E-06 40.8 6.5 35 156-196 206-240 (244)
215 PRK15317 alkyl hydroperoxide r 94.1 0.39 8.4E-06 43.5 9.2 85 100-196 7-91 (517)
216 cd03068 PDI_b_ERp72 PDIb famil 94.0 1.6 3.4E-05 31.0 11.3 95 94-196 2-105 (107)
217 TIGR02654 circ_KaiB circadian 93.1 0.59 1.3E-05 32.2 6.6 75 113-189 3-79 (87)
218 cd03031 GRX_GRX_like Glutaredo 92.9 0.48 1E-05 35.9 6.7 51 116-171 2-66 (147)
219 cd02978 KaiB_like KaiB-like fa 92.9 0.59 1.3E-05 31.0 6.2 60 115-174 3-64 (72)
220 TIGR03140 AhpF alkyl hydropero 92.8 0.95 2.1E-05 41.0 9.5 86 100-196 7-92 (515)
221 PRK09301 circadian clock prote 92.7 0.66 1.4E-05 33.0 6.6 75 112-188 5-81 (103)
222 PF09673 TrbC_Ftype: Type-F co 91.9 2.5 5.5E-05 30.4 9.1 71 100-174 10-80 (113)
223 PF00837 T4_deiodinase: Iodoth 91.0 0.29 6.2E-06 40.0 3.7 59 91-151 81-142 (237)
224 PHA03075 glutaredoxin-like pro 90.8 0.46 1E-05 34.4 4.2 30 113-142 2-31 (123)
225 KOG2640 Thioredoxin [Function 89.6 0.13 2.8E-06 43.4 0.6 82 111-194 75-157 (319)
226 cd02977 ArsC_family Arsenate R 88.7 0.54 1.2E-05 33.1 3.2 32 117-153 2-33 (105)
227 PF06053 DUF929: Domain of unk 87.9 2.1 4.5E-05 35.3 6.6 58 111-174 57-114 (249)
228 cd03060 GST_N_Omega_like GST_N 87.3 2.2 4.8E-05 27.3 5.3 51 117-170 2-53 (71)
229 TIGR01617 arsC_related transcr 87.0 1.4 3E-05 31.7 4.6 33 117-154 2-34 (117)
230 TIGR02742 TrbC_Ftype type-F co 86.5 5.2 0.00011 29.7 7.4 36 154-189 60-105 (130)
231 cd03036 ArsC_like Arsenate Red 84.2 1.7 3.6E-05 31.1 3.8 52 117-173 2-57 (111)
232 cd00570 GST_N_family Glutathio 84.1 1.3 2.8E-05 27.2 2.9 51 118-171 3-55 (71)
233 cd03035 ArsC_Yffb Arsenate Red 83.7 1.6 3.5E-05 30.9 3.5 32 117-153 2-33 (105)
234 PRK01655 spxA transcriptional 83.6 2.2 4.7E-05 31.5 4.3 34 116-154 2-35 (131)
235 PF02630 SCO1-SenC: SCO1/SenC; 83.0 2.9 6.4E-05 32.2 5.0 45 109-153 49-98 (174)
236 COG3019 Predicted metal-bindin 81.6 4.5 9.8E-05 30.4 5.2 72 114-196 26-101 (149)
237 cd03051 GST_N_GTT2_like GST_N 80.0 4.9 0.00011 25.4 4.6 51 118-171 3-57 (74)
238 KOG2507 Ubiquitin regulatory p 79.4 19 0.00041 32.1 9.1 83 112-194 18-106 (506)
239 cd03024 DsbA_FrnE DsbA family, 77.6 2.6 5.6E-05 32.7 3.2 38 154-196 164-201 (201)
240 cd03032 ArsC_Spx Arsenate Redu 77.6 6 0.00013 28.3 4.9 33 116-153 2-34 (115)
241 PF04592 SelP_N: Selenoprotein 77.0 4.9 0.00011 32.8 4.6 46 107-152 21-71 (238)
242 cd03037 GST_N_GRX2 GST_N famil 76.6 4.7 0.0001 25.7 3.7 50 118-170 3-52 (71)
243 COG4545 Glutaredoxin-related p 76.5 5.9 0.00013 26.6 4.1 54 117-176 5-74 (85)
244 COG1999 Uncharacterized protei 76.4 16 0.00035 29.1 7.5 42 111-152 66-113 (207)
245 COG3634 AhpF Alkyl hydroperoxi 76.3 13 0.00029 32.6 7.2 72 100-171 104-175 (520)
246 PRK12559 transcriptional regul 76.2 5 0.00011 29.6 4.2 32 116-152 2-33 (131)
247 PF07689 KaiB: KaiB domain; I 76.0 1.1 2.5E-05 30.4 0.6 66 121-188 5-72 (82)
248 COG2761 FrnE Predicted dithiol 75.8 5 0.00011 32.6 4.3 35 156-195 175-209 (225)
249 cd03041 GST_N_2GST_N GST_N fam 75.8 15 0.00031 23.9 6.0 49 117-170 3-55 (77)
250 KOG2792 Putative cytochrome C 73.7 21 0.00046 29.7 7.5 85 109-193 136-269 (280)
251 cd03040 GST_N_mPGES2 GST_N fam 72.0 23 0.0005 22.7 6.6 53 116-172 2-54 (77)
252 PF04134 DUF393: Protein of un 71.9 6.5 0.00014 27.7 3.8 54 119-173 2-57 (114)
253 cd03059 GST_N_SspA GST_N famil 71.5 20 0.00044 22.5 5.8 51 117-170 2-53 (73)
254 cd03045 GST_N_Delta_Epsilon GS 70.4 8.1 0.00018 24.6 3.7 51 117-170 2-56 (74)
255 PRK13344 spxA transcriptional 66.6 11 0.00025 27.7 4.2 32 116-152 2-33 (132)
256 cd03022 DsbA_HCCA_Iso DsbA fam 64.3 9.6 0.00021 29.1 3.6 35 155-195 157-191 (192)
257 PRK13730 conjugal transfer pil 63.8 56 0.0012 26.2 7.8 34 154-189 151-184 (212)
258 cd03074 PDI_b'_Calsequestrin_C 62.7 56 0.0012 23.6 10.6 86 111-196 19-117 (120)
259 cd03055 GST_N_Omega GST_N fami 61.8 29 0.00062 23.3 5.3 53 116-171 19-72 (89)
260 PF13417 GST_N_3: Glutathione 58.6 46 0.00099 21.3 5.9 49 119-170 2-51 (75)
261 cd03025 DsbA_FrnE_like DsbA fa 57.6 16 0.00035 27.9 3.8 27 116-142 3-29 (193)
262 cd03025 DsbA_FrnE_like DsbA fa 57.3 13 0.00027 28.5 3.2 22 155-176 159-180 (193)
263 cd03021 DsbA_GSTK DsbA family, 56.8 11 0.00023 29.8 2.8 39 156-195 170-208 (209)
264 PF09822 ABC_transp_aux: ABC-t 53.8 1.2E+02 0.0026 24.7 11.2 62 103-165 16-88 (271)
265 COG0278 Glutaredoxin-related p 53.7 63 0.0014 23.0 5.8 68 102-176 7-80 (105)
266 PF00255 GSHPx: Glutathione pe 53.7 41 0.00089 24.0 5.1 66 107-173 16-91 (108)
267 cd02990 UAS_FAF1 UAS family, F 52.3 96 0.0021 23.1 11.2 81 112-194 21-128 (136)
268 KOG0852 Alkyl hydroperoxide re 50.2 24 0.00051 27.7 3.5 37 106-142 27-64 (196)
269 PF09695 YtfJ_HI0045: Bacteria 47.5 1.3E+02 0.0028 23.2 8.2 43 155-197 113-156 (160)
270 COG0386 BtuE Glutathione perox 46.9 1.3E+02 0.0028 23.1 7.3 45 107-152 20-66 (162)
271 PF06953 ArsD: Arsenical resis 46.9 1.1E+02 0.0024 22.3 7.2 52 142-197 39-100 (123)
272 cd03033 ArsC_15kD Arsenate Red 45.7 29 0.00063 24.8 3.3 22 116-137 2-23 (113)
273 TIGR03439 methyl_EasF probable 45.0 1.1E+02 0.0023 26.3 7.1 40 112-154 76-115 (319)
274 COG0450 AhpC Peroxiredoxin [Po 45.0 23 0.0005 28.1 2.8 43 111-153 32-77 (194)
275 KOG0911 Glutaredoxin-related p 42.5 1.2E+02 0.0025 24.8 6.5 60 112-176 138-203 (227)
276 cd03056 GST_N_4 GST_N family, 41.6 47 0.001 20.6 3.6 51 118-171 3-57 (73)
277 PF06491 Disulph_isomer: Disul 41.4 1E+02 0.0022 23.0 5.5 82 92-176 16-106 (136)
278 COG3531 Predicted protein-disu 41.3 43 0.00093 26.8 3.8 22 155-176 164-185 (212)
279 PF08806 Sep15_SelM: Sep15/Sel 40.5 26 0.00057 23.5 2.2 32 165-196 41-73 (78)
280 TIGR00014 arsC arsenate reduct 37.1 50 0.0011 23.5 3.4 32 117-153 2-33 (114)
281 KOG2244 Highly conserved prote 37.0 28 0.0006 32.2 2.4 76 99-176 101-188 (786)
282 COG2077 Tpx Peroxiredoxin [Pos 36.2 1.2E+02 0.0026 23.3 5.3 43 110-152 42-85 (158)
283 PRK10954 periplasmic protein d 35.8 31 0.00068 27.1 2.4 20 155-176 157-176 (207)
284 COG0295 Cdd Cytidine deaminase 34.2 82 0.0018 23.5 4.2 32 103-134 61-98 (134)
285 COG3011 Predicted thiol-disulf 32.9 2.1E+02 0.0046 21.4 7.7 75 112-190 6-81 (137)
286 COG1393 ArsC Arsenate reductas 32.3 60 0.0013 23.5 3.2 23 116-138 3-25 (117)
287 PF11287 DUF3088: Protein of u 31.4 88 0.0019 22.6 3.8 51 124-174 24-77 (112)
288 PF14424 Toxin-deaminase: The 31.3 2.2E+02 0.0047 21.0 6.2 31 117-150 99-131 (133)
289 KOG1651 Glutathione peroxidase 30.7 1.2E+02 0.0026 23.6 4.7 46 107-152 29-76 (171)
290 cd03052 GST_N_GDAP1 GST_N fami 30.1 1.5E+02 0.0033 18.9 4.6 51 117-170 2-56 (73)
291 cd03034 ArsC_ArsC Arsenate Red 29.4 60 0.0013 22.9 2.8 21 117-137 2-22 (112)
292 PF13778 DUF4174: Domain of un 25.9 2.5E+02 0.0054 20.0 9.4 74 123-196 21-109 (118)
293 PF03960 ArsC: ArsC family; I 25.5 1.6E+02 0.0034 20.5 4.4 31 119-154 1-31 (110)
294 PF09499 RE_ApaLI: ApaLI-like 25.4 2.4E+02 0.0051 22.2 5.4 51 92-142 123-173 (191)
295 PF01216 Calsequestrin: Calseq 24.9 4.4E+02 0.0095 23.2 7.5 104 92-196 249-365 (383)
296 KOG2990 C2C2-type Zn-finger pr 24.6 1.2E+02 0.0026 25.6 3.9 35 99-133 27-64 (317)
297 PHA02513 V1 structural protein 23.0 92 0.002 22.5 2.6 37 99-144 23-59 (135)
298 cd03053 GST_N_Phi GST_N family 22.8 1.8E+02 0.0039 18.1 4.0 51 117-170 3-57 (76)
299 KOG4277 Uncharacterized conser 22.2 5.2E+02 0.011 22.4 7.8 92 94-196 135-228 (468)
300 PRK10853 putative reductase; P 21.0 1.2E+02 0.0025 21.9 2.9 22 116-137 2-23 (118)
301 PF14421 LmjF365940-deam: A di 20.8 1.3E+02 0.0029 23.6 3.3 26 124-152 157-182 (193)
302 TIGR01616 nitro_assoc nitrogen 20.3 1.5E+02 0.0033 21.6 3.5 22 116-137 3-24 (126)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.2e-24 Score=162.81 Aligned_cols=102 Identities=25% Similarity=0.513 Sum_probs=95.1
Q ss_pred CeEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC-eEEEEEECCCCHHHHHHCCCCcccEEEE
Q 029208 93 NMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHF 171 (197)
Q Consensus 93 ~~~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~ 171 (197)
....+.+..+|++.+.+ ++.||+|+|||+||+||+.+.|.++++..+|.+ ++|++||+|++.+++.+|+|..+||+++
T Consensus 43 ~~~~~~s~~~~~~~Vi~-S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlv 121 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVIN-SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLV 121 (150)
T ss_pred ccccccCHHHHHHHHHc-cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEE
Confidence 45677889999999987 589999999999999999999999999999987 9999999999999999999999999999
Q ss_pred EeCCCceEEEeecCccHHHHHhhhc
Q 029208 172 YRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 172 ~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
|++|. ..+++.|..+++.+..+|+
T Consensus 122 fknGe-~~d~~vG~~~~~~l~~~i~ 145 (150)
T KOG0910|consen 122 FKNGE-KVDRFVGAVPKEQLRSLIK 145 (150)
T ss_pred EECCE-EeeeecccCCHHHHHHHHH
Confidence 99987 7799999999999998875
No 2
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.91 E-value=1.1e-23 Score=152.79 Aligned_cols=91 Identities=16% Similarity=0.223 Sum_probs=82.2
Q ss_pred hHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC-eEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCce
Q 029208 100 TQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQ 178 (197)
Q Consensus 100 ~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~ 178 (197)
.++|++.+....+++++|+|||+||++|+.|.|.++++++++++ +.|++||+|++++++++|+|.++||+++|++|+ .
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~-~ 80 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK-H 80 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE-E
Confidence 57888888865689999999999999999999999999999997 789999999999999999999999999999987 7
Q ss_pred EEEeecCccHHHH
Q 029208 179 LESFSCSLAKVML 191 (197)
Q Consensus 179 ~~~~~g~~~~~~l 191 (197)
+....|..++.++
T Consensus 81 v~~~~G~~~~~~~ 93 (114)
T cd02954 81 MKIDLGTGNNNKI 93 (114)
T ss_pred EEEEcCCCCCceE
Confidence 7888887766544
No 3
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.90 E-value=1e-22 Score=145.32 Aligned_cols=97 Identities=22% Similarity=0.498 Sum_probs=88.5
Q ss_pred CChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC-eEEEEEECCCCHHHHHHCCCCcccEEEEEeCCC
Q 029208 98 HSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAH 176 (197)
Q Consensus 98 ~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~ 176 (197)
.+.++|++.+.+ ++++++|+||++||++|+.+.|.++++++++.+ +.|++||++++++++++|+|.++||+++|++|+
T Consensus 6 l~~~~f~~~i~~-~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 84 (104)
T cd03004 6 LTPEDFPELVLN-RKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGNA 84 (104)
T ss_pred cCHHHHHHHHhc-CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCCC
Confidence 357799998876 467999999999999999999999999999875 899999999999999999999999999999986
Q ss_pred ceEEEeecCcc-HHHHHhhh
Q 029208 177 GQLESFSCSLA-KVMLRILI 195 (197)
Q Consensus 177 ~~~~~~~g~~~-~~~l~~fI 195 (197)
+.+..|.|... .+++..||
T Consensus 85 ~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 85 SKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred CCceEccCCCCCHHHHHhhC
Confidence 68899999987 99999886
No 4
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.90 E-value=7.2e-23 Score=145.93 Aligned_cols=93 Identities=14% Similarity=0.266 Sum_probs=86.0
Q ss_pred HHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECC-CCHHHHHHCCCCcccEEEEEeCCCceE
Q 029208 101 QEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFD-ENKPMCKSLNVKVLPYFHFYRGAHGQL 179 (197)
Q Consensus 101 ~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d-~~~~l~~~~~v~~~Pt~~~~~~g~~~~ 179 (197)
+++.+.+.+.++++++|+|||+||++|+.+.|.+++++++++++.+++||.+ ++++++++|+|.++||+++|++| .+
T Consensus 7 ~~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g--~~ 84 (100)
T cd02999 7 NIALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST--PR 84 (100)
T ss_pred hHHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC--ce
Confidence 4667777777899999999999999999999999999999999999999999 88999999999999999999877 67
Q ss_pred EEeecCccHHHHHhhh
Q 029208 180 ESFSCSLAKVMLRILI 195 (197)
Q Consensus 180 ~~~~g~~~~~~l~~fI 195 (197)
.++.|..+.+.+.+||
T Consensus 85 ~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 85 VRYNGTRTLDSLAAFY 100 (100)
T ss_pred eEecCCCCHHHHHhhC
Confidence 8999999999999986
No 5
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.90 E-value=1.9e-22 Score=144.38 Aligned_cols=92 Identities=28% Similarity=0.487 Sum_probs=82.3
Q ss_pred CChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCH---HHHHHCCCCcccEEEEEeC
Q 029208 98 HSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENK---PMCKSLNVKVLPYFHFYRG 174 (197)
Q Consensus 98 ~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~---~l~~~~~v~~~Pt~~~~~~ 174 (197)
++.++|++.+.+.++++++|+|||+||++|+.+.|.+++++++++++.|++||+|++. +++++|+|.++||++||++
T Consensus 1 ~~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 1 HSVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence 4678999999876799999999999999999999999999999988999999999874 7999999999999999988
Q ss_pred CCceEEEeecCccHHH
Q 029208 175 AHGQLESFSCSLAKVM 190 (197)
Q Consensus 175 g~~~~~~~~g~~~~~~ 190 (197)
|+ .+.++.|..+.+.
T Consensus 81 G~-~v~~~~G~~~~~l 95 (103)
T cd02985 81 GE-KIHEEEGIGPDEL 95 (103)
T ss_pred Ce-EEEEEeCCCHHHH
Confidence 76 7889998665443
No 6
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.3e-22 Score=144.53 Aligned_cols=86 Identities=42% Similarity=0.836 Sum_probs=75.6
Q ss_pred HhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCceEEEeecCcc
Q 029208 108 SQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLA 187 (197)
Q Consensus 108 ~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~~~ 187 (197)
.+.++++++|+|||+|||+|+.+.|.+.+++.+|+++.|++||+|+..+++++++|...|||+||++|+ .+..+.|...
T Consensus 17 ~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~-~~~~~vGa~~ 95 (106)
T KOG0907|consen 17 AEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGE-EVDEVVGANK 95 (106)
T ss_pred hhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCE-EEEEEecCCH
Confidence 343579999999999999999999999999999999999999999999999999999999999999887 6677777665
Q ss_pred HHHHHhhh
Q 029208 188 KVMLRILI 195 (197)
Q Consensus 188 ~~~l~~fI 195 (197)
. ++++.|
T Consensus 96 ~-~l~~~i 102 (106)
T KOG0907|consen 96 A-ELEKKI 102 (106)
T ss_pred H-HHHHHH
Confidence 5 555443
No 7
>PHA02278 thioredoxin-like protein
Probab=99.89 E-value=3e-22 Score=143.47 Aligned_cols=95 Identities=19% Similarity=0.269 Sum_probs=84.1
Q ss_pred CChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC-CeEEEEEECCCC----HHHHHHCCCCcccEEEEE
Q 029208 98 HSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP-EIVFLKVNFDEN----KPMCKSLNVKVLPYFHFY 172 (197)
Q Consensus 98 ~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~----~~l~~~~~v~~~Pt~~~~ 172 (197)
++.++|.+.+.+ +++++|+|||+||++|+.+.|.++++++++. ++.|++||+|.+ ++++++|+|.++||+++|
T Consensus 2 ~~~~~~~~~i~~--~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~f 79 (103)
T PHA02278 2 NSLVDLNTAIRQ--KKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGY 79 (103)
T ss_pred CCHHHHHHHHhC--CCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEE
Confidence 457789998854 7999999999999999999999999998754 478999999986 689999999999999999
Q ss_pred eCCCceEEEeecCccHHHHHhhh
Q 029208 173 RGAHGQLESFSCSLAKVMLRILI 195 (197)
Q Consensus 173 ~~g~~~~~~~~g~~~~~~l~~fI 195 (197)
++|+ .+.++.|..+.+++.++-
T Consensus 80 k~G~-~v~~~~G~~~~~~l~~~~ 101 (103)
T PHA02278 80 KDGQ-LVKKYEDQVTPMQLQELE 101 (103)
T ss_pred ECCE-EEEEEeCCCCHHHHHhhh
Confidence 9975 889999999998888764
No 8
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.89 E-value=2.7e-22 Score=142.58 Aligned_cols=98 Identities=21% Similarity=0.395 Sum_probs=87.8
Q ss_pred eEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC-eEEEEEECCCCHHHHHHCCCCcccEEEEE
Q 029208 94 MIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHFY 172 (197)
Q Consensus 94 ~~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~ 172 (197)
++.+ +.++|++.+.+ +++++|+||++||++|+++.|.++++++++++ +.|++||+++++.++++++|.++||+++|
T Consensus 3 ~~~l-~~~~f~~~v~~--~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 79 (101)
T cd03003 3 IVTL-DRGDFDAAVNS--GEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVF 79 (101)
T ss_pred eEEc-CHhhHHHHhcC--CCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEE
Confidence 4444 57799998854 68999999999999999999999999999986 89999999999999999999999999999
Q ss_pred eCCCceEEEeecCccHHHHHhhh
Q 029208 173 RGAHGQLESFSCSLAKVMLRILI 195 (197)
Q Consensus 173 ~~g~~~~~~~~g~~~~~~l~~fI 195 (197)
++|+ .+..|.|..+.+.+..|.
T Consensus 80 ~~g~-~~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 80 PSGM-NPEKYYGDRSKESLVKFA 101 (101)
T ss_pred cCCC-CcccCCCCCCHHHHHhhC
Confidence 8876 678999999999988873
No 9
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.88 E-value=4.1e-22 Score=145.03 Aligned_cols=101 Identities=14% Similarity=0.268 Sum_probs=86.4
Q ss_pred CeEEeCChHHHHHHHH-hcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC-eEEEEEECCCCHHHH-HHCCCCcccEE
Q 029208 93 NMIDIHSTQEFLEALS-QAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMC-KSLNVKVLPYF 169 (197)
Q Consensus 93 ~~~~i~~~~~~~~~l~-~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~-~~~~v~~~Pt~ 169 (197)
.++ ..+.++|++.+. ..++++++|+|||+||++|+.+.|.++++++++++ +.|++||++++.+++ ++|+|.++||+
T Consensus 10 ~v~-~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl 88 (113)
T cd03006 10 PVL-DFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVI 88 (113)
T ss_pred CeE-EechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEE
Confidence 344 445667777632 22489999999999999999999999999999986 899999999999999 58999999999
Q ss_pred EEEeCCCceEEEeecCccHHHHHhhh
Q 029208 170 HFYRGAHGQLESFSCSLAKVMLRILI 195 (197)
Q Consensus 170 ~~~~~g~~~~~~~~g~~~~~~l~~fI 195 (197)
++|++|+ ....|.|..+++.+..|.
T Consensus 89 ~lf~~g~-~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 89 HLYYRSR-GPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred EEEECCc-cceEEeCCCCHHHHHhhC
Confidence 9999877 578899999999998774
No 10
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.88 E-value=6.3e-22 Score=139.17 Aligned_cols=94 Identities=24% Similarity=0.456 Sum_probs=85.3
Q ss_pred HHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC-eEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCceEE
Q 029208 102 EFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLE 180 (197)
Q Consensus 102 ~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~ 180 (197)
+|++.+.+..+++++|+||++||++|+.+.|.+.++++.+++ +.+++||++++++++++|+|.++||+++|++|+ .+.
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~-~~~ 80 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQ-PVD 80 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCE-Eee
Confidence 577778665688999999999999999999999999999875 889999999999999999999999999998665 778
Q ss_pred EeecCccHHHHHhhhc
Q 029208 181 SFSCSLAKVMLRILIQ 196 (197)
Q Consensus 181 ~~~g~~~~~~l~~fI~ 196 (197)
.+.|..+.+++..||+
T Consensus 81 ~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 81 GFQGAQPEEQLRQMLD 96 (96)
T ss_pred eecCCCCHHHHHHHhC
Confidence 8999999999998874
No 11
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.88 E-value=8e-22 Score=139.40 Aligned_cols=99 Identities=29% Similarity=0.601 Sum_probs=91.7
Q ss_pred EeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC-CeEEEEEECCCCHHHHHHCCCCcccEEEEEeC
Q 029208 96 DIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP-EIVFLKVNFDENKPMCKSLNVKVLPYFHFYRG 174 (197)
Q Consensus 96 ~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~ 174 (197)
...+.++|++.+.+ .+++++|+||++||++|+.+.|.+.+++++++ ++.|+.||+++++.++++|+|.++||+++|++
T Consensus 2 ~~lt~~~f~~~i~~-~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 80 (103)
T PF00085_consen 2 IVLTDENFEKFINE-SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKN 80 (103)
T ss_dssp EEESTTTHHHHHTT-TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEET
T ss_pred EECCHHHHHHHHHc-cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEEC
Confidence 34577899999987 57999999999999999999999999999999 79999999999999999999999999999998
Q ss_pred CCceEEEeecCccHHHHHhhhc
Q 029208 175 AHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 175 g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
|+ ....+.|..+.+.+.+||+
T Consensus 81 g~-~~~~~~g~~~~~~l~~~i~ 101 (103)
T PF00085_consen 81 GK-EVKRYNGPRNAESLIEFIE 101 (103)
T ss_dssp TE-EEEEEESSSSHHHHHHHHH
T ss_pred Cc-EEEEEECCCCHHHHHHHHH
Confidence 87 6779999999999999985
No 12
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.88 E-value=9.2e-22 Score=147.87 Aligned_cols=102 Identities=19% Similarity=0.214 Sum_probs=88.6
Q ss_pred eEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC-eEEEEEECCCCHHHHHHCCCCcccEEE-E
Q 029208 94 MIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFH-F 171 (197)
Q Consensus 94 ~~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~v~~~Pt~~-~ 171 (197)
+.++.+.+++++.+.+..+++|+|+|||+||++|+.+.|.++++++++++ +.|++||+|++++++++|+|++.||++ |
T Consensus 5 l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~f 84 (142)
T PLN00410 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFF 84 (142)
T ss_pred HhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEE
Confidence 45678899999999866789999999999999999999999999999998 788999999999999999999776666 9
Q ss_pred EeCCCceEEEeec--------CccHHHHHhhh
Q 029208 172 YRGAHGQLESFSC--------SLAKVMLRILI 195 (197)
Q Consensus 172 ~~~g~~~~~~~~g--------~~~~~~l~~fI 195 (197)
|++|+..+.+.+| ..+++++...+
T Consensus 85 fk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i 116 (142)
T PLN00410 85 FRNKHIMIDLGTGNNNKINWALKDKQEFIDIV 116 (142)
T ss_pred EECCeEEEEEecccccccccccCCHHHHHHHH
Confidence 9988778889988 35555555443
No 13
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.87 E-value=1.4e-21 Score=143.47 Aligned_cols=101 Identities=12% Similarity=0.102 Sum_probs=89.3
Q ss_pred CeEEeCChHHHHHHHHhcCCCeEEEEEEcCCChh--HH--hhHHHHHHHHHhC--C-CeEEEEEECCCCHHHHHHCCCCc
Q 029208 93 NMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCAS--CR--ALFPKLCRTAEEH--P-EIVFLKVNFDENKPMCKSLNVKV 165 (197)
Q Consensus 93 ~~~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~--Ck--~~~p~l~~la~~~--~-~v~~~~Vd~d~~~~l~~~~~v~~ 165 (197)
+.+...+.++|++.+.+ .+.++|++||+.||++ |+ .+.|.+.++++++ + ++.|++||+|++++++++|+|.+
T Consensus 9 ~~v~~lt~~nF~~~v~~-~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~ 87 (120)
T cd03065 9 DRVIDLNEKNYKQVLKK-YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDE 87 (120)
T ss_pred cceeeCChhhHHHHHHh-CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcc
Confidence 34444567999999987 4789999999999987 99 8999999999987 5 49999999999999999999999
Q ss_pred ccEEEEEeCCCceEEEeecCccHHHHHhhhc
Q 029208 166 LPYFHFYRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 166 ~Pt~~~~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
+||+++|++|+ .+. +.|..+++.+..||+
T Consensus 88 iPTl~lfk~G~-~v~-~~G~~~~~~l~~~l~ 116 (120)
T cd03065 88 EDSIYVFKDDE-VIE-YDGEFAADTLVEFLL 116 (120)
T ss_pred ccEEEEEECCE-EEE-eeCCCCHHHHHHHHH
Confidence 99999999887 566 999999999999874
No 14
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.87 E-value=2.5e-21 Score=139.32 Aligned_cols=96 Identities=20% Similarity=0.417 Sum_probs=85.5
Q ss_pred CChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhC----C---CeEEEEEECCCCHHHHHHCCCCcccEEE
Q 029208 98 HSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEH----P---EIVFLKVNFDENKPMCKSLNVKVLPYFH 170 (197)
Q Consensus 98 ~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~----~---~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~ 170 (197)
.+.++|++.+.. +++++|+|||+||++|+++.|.++++++.+ + ++.+++||++++++++++|+|+++||++
T Consensus 6 l~~~~f~~~i~~--~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~ 83 (108)
T cd02996 6 LTSGNIDDILQS--AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLK 83 (108)
T ss_pred cCHhhHHHHHhc--CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEE
Confidence 367899998854 689999999999999999999999998764 2 3899999999999999999999999999
Q ss_pred EEeCCCceEEEeecCccHHHHHhhh
Q 029208 171 FYRGAHGQLESFSCSLAKVMLRILI 195 (197)
Q Consensus 171 ~~~~g~~~~~~~~g~~~~~~l~~fI 195 (197)
+|++|+.....+.|..+.+.+.+||
T Consensus 84 ~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 84 LFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEeCCcCcceecCCCCCHHHHHhhC
Confidence 9998875568899999999999986
No 15
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.87 E-value=5.8e-21 Score=136.35 Aligned_cols=96 Identities=24% Similarity=0.458 Sum_probs=84.4
Q ss_pred EeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC--eEEEEEECCCCHHHHHHCCCCcccEEEEEe
Q 029208 96 DIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE--IVFLKVNFDENKPMCKSLNVKVLPYFHFYR 173 (197)
Q Consensus 96 ~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~ 173 (197)
.+.+.++|++.+.+ +++++|+|||+||++|+.+.|.+.++++++++ +.|+.+|+| +.+++++|+|+++||+++|+
T Consensus 3 ~i~~~~~~~~~i~~--~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~ 79 (102)
T cd02948 3 EINNQEEWEELLSN--KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYK 79 (102)
T ss_pred EccCHHHHHHHHcc--CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEE
Confidence 46789999998854 78999999999999999999999999999873 789999999 78899999999999999998
Q ss_pred CCCceEEEeecCccHHHHHhhhc
Q 029208 174 GAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 174 ~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
+|+ .+.+..|. +.+.+.++|+
T Consensus 80 ~g~-~~~~~~G~-~~~~~~~~i~ 100 (102)
T cd02948 80 NGE-LVAVIRGA-NAPLLNKTIT 100 (102)
T ss_pred CCE-EEEEEecC-ChHHHHHHHh
Confidence 765 77888885 6677777764
No 16
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.1e-21 Score=158.59 Aligned_cols=103 Identities=22% Similarity=0.511 Sum_probs=91.4
Q ss_pred CCeEEeCChHHHHHHH-HhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC-eEEEEEECCCCHHHHHHCCCCcccEE
Q 029208 92 PNMIDIHSTQEFLEAL-SQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYF 169 (197)
Q Consensus 92 ~~~~~i~~~~~~~~~l-~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~v~~~Pt~ 169 (197)
+.+++++ ..+|.+.+ .....+||+|+||+|||++|+.+.|.+++++.+|.+ +.+++||||+++.++.+|||+++||+
T Consensus 23 ~~I~dvT-~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV 101 (304)
T COG3118 23 PGIKDVT-EANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTV 101 (304)
T ss_pred ccceech-HhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeE
Confidence 4455555 45665555 444567999999999999999999999999999997 99999999999999999999999999
Q ss_pred EEEeCCCceEEEeecCccHHHHHhhhc
Q 029208 170 HFYRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 170 ~~~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
+.|++|+ .+..|.|..+..++++|+.
T Consensus 102 ~af~dGq-pVdgF~G~qPesqlr~~ld 127 (304)
T COG3118 102 YAFKDGQ-PVDGFQGAQPESQLRQFLD 127 (304)
T ss_pred EEeeCCc-CccccCCCCcHHHHHHHHH
Confidence 9999987 8999999999999999985
No 17
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.85 E-value=1.6e-20 Score=136.65 Aligned_cols=91 Identities=23% Similarity=0.400 Sum_probs=83.2
Q ss_pred CCeEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEEE
Q 029208 92 PNMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHF 171 (197)
Q Consensus 92 ~~~~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~ 171 (197)
..+..|.+.++|.+.+.+ +++++|+||++||++|+.+.|.++++++++++++|++||++++++++++|+|.++||+++
T Consensus 4 g~v~~i~~~~~~~~~i~~--~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~ 81 (113)
T cd02989 4 GKYREVSDEKEFFEIVKS--SERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVIL 81 (113)
T ss_pred CCeEEeCCHHHHHHHHhC--CCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEEE
Confidence 457888898999999976 689999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCceEEEeecC
Q 029208 172 YRGAHGQLESFSCS 185 (197)
Q Consensus 172 ~~~g~~~~~~~~g~ 185 (197)
|++|+ ++.++.|.
T Consensus 82 fk~G~-~v~~~~g~ 94 (113)
T cd02989 82 FKNGK-TVDRIVGF 94 (113)
T ss_pred EECCE-EEEEEECc
Confidence 99986 66666554
No 18
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.85 E-value=9.5e-21 Score=137.34 Aligned_cols=97 Identities=12% Similarity=0.229 Sum_probs=85.6
Q ss_pred ChHHHHHHH-HhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC--CeEEEEEECCCCHHHHHHCCCCcccEEEEEeCC
Q 029208 99 STQEFLEAL-SQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGA 175 (197)
Q Consensus 99 ~~~~~~~~l-~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g 175 (197)
+.++|.+.+ ....+++++|+||++||++|+.+.|.+.+++++++ ++.+++||+++++.++++++|.++||+++|++|
T Consensus 10 ~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g 89 (111)
T cd02963 10 TFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIING 89 (111)
T ss_pred eHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECC
Confidence 566776544 33358999999999999999999999999999986 489999999999999999999999999999877
Q ss_pred CceEEEeecCccHHHHHhhhc
Q 029208 176 HGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 176 ~~~~~~~~g~~~~~~l~~fI~ 196 (197)
+ .+..+.|..+.+.+..||+
T Consensus 90 ~-~~~~~~G~~~~~~l~~~i~ 109 (111)
T cd02963 90 Q-VTFYHDSSFTKQHVVDFVR 109 (111)
T ss_pred E-EEEEecCCCCHHHHHHHHh
Confidence 5 7788899999999999885
No 19
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.85 E-value=1.4e-20 Score=134.99 Aligned_cols=98 Identities=23% Similarity=0.533 Sum_probs=87.9
Q ss_pred CChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC-eEEEEEECCC--CHHHHHHCCCCcccEEEEEeC
Q 029208 98 HSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDE--NKPMCKSLNVKVLPYFHFYRG 174 (197)
Q Consensus 98 ~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~--~~~l~~~~~v~~~Pt~~~~~~ 174 (197)
.+.++|++.+.+ .+++++|+||++||++|+.+.|.+.++++++++ +.++.+|++. +.+++++|+|.++||+++|++
T Consensus 5 l~~~~~~~~i~~-~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~ 83 (109)
T cd03002 5 LTPKNFDKVVHN-TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRP 83 (109)
T ss_pred cchhhHHHHHhc-CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeC
Confidence 456789888876 478999999999999999999999999999875 8899999998 889999999999999999998
Q ss_pred CC----ceEEEeecCccHHHHHhhhc
Q 029208 175 AH----GQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 175 g~----~~~~~~~g~~~~~~l~~fI~ 196 (197)
|+ .....|.|..+.+.+..||.
T Consensus 84 ~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 84 PKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred CCcccccccccccCccCHHHHHHHhC
Confidence 86 35678999999999999973
No 20
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.85 E-value=1.7e-20 Score=135.38 Aligned_cols=84 Identities=14% Similarity=0.251 Sum_probs=76.2
Q ss_pred hHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC-eEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCce
Q 029208 100 TQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQ 178 (197)
Q Consensus 100 ~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~ 178 (197)
.+++++.+.+..+++|+|+|+|+||++|+.+.|.++++++++++ +.|++||+|+.++++++|+|...||++||++|+..
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence 46788888876799999999999999999999999999999998 99999999999999999999999999999998754
Q ss_pred EEEee
Q 029208 179 LESFS 183 (197)
Q Consensus 179 ~~~~~ 183 (197)
...++
T Consensus 82 ~~d~g 86 (114)
T cd02986 82 KVDYG 86 (114)
T ss_pred EEecC
Confidence 44443
No 21
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.84 E-value=5.4e-20 Score=130.46 Aligned_cols=97 Identities=16% Similarity=0.381 Sum_probs=88.0
Q ss_pred CChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC-eEEEEEECCCCHHHHHHCCCCcccEEEEEeCCC
Q 029208 98 HSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAH 176 (197)
Q Consensus 98 ~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~ 176 (197)
.+.++|.+.+.+ .+++++|+||++||++|+.+.|.+.++++++++ +.++.+|++++++++++|+|.++||+++|++|+
T Consensus 5 l~~~~~~~~i~~-~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~ 83 (103)
T cd03001 5 LTDSNFDKKVLN-SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGK 83 (103)
T ss_pred cCHHhHHHHHhc-CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCCC
Confidence 367788888876 367899999999999999999999999999875 999999999999999999999999999999886
Q ss_pred ceEEEeecCccHHHHHhhh
Q 029208 177 GQLESFSCSLAKVMLRILI 195 (197)
Q Consensus 177 ~~~~~~~g~~~~~~l~~fI 195 (197)
.....|.|..+.+++..|+
T Consensus 84 ~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 84 NSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred cceeecCCCCCHHHHHHHh
Confidence 6778999999999999986
No 22
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.84 E-value=4.8e-20 Score=130.80 Aligned_cols=96 Identities=20% Similarity=0.396 Sum_probs=83.7
Q ss_pred eEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC--CeEEEEEECCCCHHHHHHCCCCcccEEEE
Q 029208 94 MIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDENKPMCKSLNVKVLPYFHF 171 (197)
Q Consensus 94 ~~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~ 171 (197)
++.+ +.++|++.+. ++ ++|+|||+||++|+.+.|.++++++.++ ++.++++|+++++.++++|+|.++||+++
T Consensus 3 v~~l-~~~~f~~~~~---~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 3 VVEL-TDSNWTLVLE---GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYH 77 (101)
T ss_pred eEEc-ChhhHHHHhC---CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence 3444 5778998763 33 7899999999999999999999998875 48999999999999999999999999999
Q ss_pred EeCCCceEEEeecCccHHHHHhhhc
Q 029208 172 YRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 172 ~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
|++|+ +..+.|..+.+.+..||+
T Consensus 78 ~~~g~--~~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 78 AKDGV--FRRYQGPRDKEDLISFIE 100 (101)
T ss_pred eCCCC--EEEecCCCCHHHHHHHHh
Confidence 98765 478999999999999985
No 23
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.84 E-value=5.4e-20 Score=130.24 Aligned_cols=94 Identities=16% Similarity=0.474 Sum_probs=84.2
Q ss_pred CChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC----CeEEEEEECCCCHHHHHHCCCCcccEEEEEe
Q 029208 98 HSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP----EIVFLKVNFDENKPMCKSLNVKVLPYFHFYR 173 (197)
Q Consensus 98 ~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~ 173 (197)
.+.++|++.+.+ +.++|+||++||++|+.+.|.+.++++++. ++.+++||++++..++++|+|.++||+++|+
T Consensus 5 l~~~~f~~~~~~---~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 81 (102)
T cd03005 5 LTEDNFDHHIAE---GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFK 81 (102)
T ss_pred CCHHHHHHHhhc---CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEe
Confidence 356789998865 359999999999999999999999998875 4899999999999999999999999999998
Q ss_pred CCCceEEEeecCccHHHHHhhh
Q 029208 174 GAHGQLESFSCSLAKVMLRILI 195 (197)
Q Consensus 174 ~g~~~~~~~~g~~~~~~l~~fI 195 (197)
+|+ .+..+.|..+.+.+..||
T Consensus 82 ~g~-~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 82 DGE-KVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred CCC-eeeEeeCCCCHHHHHhhC
Confidence 776 778999999999998886
No 24
>PRK09381 trxA thioredoxin; Provisional
Probab=99.84 E-value=8.4e-20 Score=131.36 Aligned_cols=101 Identities=20% Similarity=0.477 Sum_probs=88.3
Q ss_pred CeEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC-eEEEEEECCCCHHHHHHCCCCcccEEEE
Q 029208 93 NMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHF 171 (197)
Q Consensus 93 ~~~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~ 171 (197)
.++.+ +.++|.+.+.+ .+++++|+||++||++|+.+.|.++++++++.+ +.++.+|++.++.++++|+|.++||+++
T Consensus 4 ~v~~~-~~~~~~~~v~~-~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 81 (109)
T PRK09381 4 KIIHL-TDDSFDTDVLK-ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL 81 (109)
T ss_pred cceee-ChhhHHHHHhc-CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEE
Confidence 35555 44688876655 478999999999999999999999999999975 8999999999999999999999999999
Q ss_pred EeCCCceEEEeecCccHHHHHhhhc
Q 029208 172 YRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 172 ~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
|++|+ .+..+.|..+.+++..+|+
T Consensus 82 ~~~G~-~~~~~~G~~~~~~l~~~i~ 105 (109)
T PRK09381 82 FKNGE-VAATKVGALSKGQLKEFLD 105 (109)
T ss_pred EeCCe-EEEEecCCCCHHHHHHHHH
Confidence 98765 7788899999999888874
No 25
>PTZ00051 thioredoxin; Provisional
Probab=99.84 E-value=1.1e-19 Score=128.13 Aligned_cols=95 Identities=28% Similarity=0.589 Sum_probs=84.9
Q ss_pred eEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEEEEe
Q 029208 94 MIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYR 173 (197)
Q Consensus 94 ~~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~ 173 (197)
+..+.+.+++.+.+.+ +++++|+||++||++|+.+.|.+++++++++++.|+.+|++++..++++|+|.++||+++|+
T Consensus 2 v~~i~~~~~~~~~~~~--~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 79 (98)
T PTZ00051 2 VHIVTSQAEFESTLSQ--NELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFK 79 (98)
T ss_pred eEEecCHHHHHHHHhc--CCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEe
Confidence 4678889999998865 78999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCceEEEeecCccHHHHH
Q 029208 174 GAHGQLESFSCSLAKVMLR 192 (197)
Q Consensus 174 ~g~~~~~~~~g~~~~~~l~ 192 (197)
+|+ .+..+.|. ..++++
T Consensus 80 ~g~-~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 80 NGS-VVDTLLGA-NDEALK 96 (98)
T ss_pred CCe-EEEEEeCC-CHHHhh
Confidence 776 77888885 555554
No 26
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.83 E-value=3.5e-20 Score=134.63 Aligned_cols=91 Identities=29% Similarity=0.480 Sum_probs=80.8
Q ss_pred CeEEeCChHHHHHHHHhcC-CCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEEE
Q 029208 93 NMIDIHSTQEFLEALSQAG-DRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHF 171 (197)
Q Consensus 93 ~~~~i~~~~~~~~~l~~~~-~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~ 171 (197)
.+..+++ ++|.+.+.+.+ +++++|+||++||++|+.+.|.+++++++++++.|++||++++ +++++|+|.++||+++
T Consensus 5 ~v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~ 82 (113)
T cd02957 5 EVREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPTLLV 82 (113)
T ss_pred eEEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCEEEE
Confidence 4566766 89999887632 4899999999999999999999999999999999999999999 9999999999999999
Q ss_pred EeCCCceEEEeecCc
Q 029208 172 YRGAHGQLESFSCSL 186 (197)
Q Consensus 172 ~~~g~~~~~~~~g~~ 186 (197)
|++|+ .+.++.|..
T Consensus 83 f~~G~-~v~~~~G~~ 96 (113)
T cd02957 83 YKNGE-LIDNIVGFE 96 (113)
T ss_pred EECCE-EEEEEecHH
Confidence 99986 778887743
No 27
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.83 E-value=1.6e-19 Score=137.70 Aligned_cols=89 Identities=18% Similarity=0.385 Sum_probs=78.8
Q ss_pred EEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC--CeEEEEEECCCCHHHHHHCCCCc------c
Q 029208 95 IDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDENKPMCKSLNVKV------L 166 (197)
Q Consensus 95 ~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~~~l~~~~~v~~------~ 166 (197)
+...+.++|++.+.+..+++++|+||++||++|+.+.|.+++++++++ ++.|++||++++++++++|+|.+ +
T Consensus 30 v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~ 109 (152)
T cd02962 30 IKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQL 109 (152)
T ss_pred cEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCC
Confidence 344556889998876567899999999999999999999999999986 49999999999999999999988 9
Q ss_pred cEEEEEeCCCceEEEeec
Q 029208 167 PYFHFYRGAHGQLESFSC 184 (197)
Q Consensus 167 Pt~~~~~~g~~~~~~~~g 184 (197)
||+++|++|+ ++.++.|
T Consensus 110 PT~ilf~~Gk-~v~r~~G 126 (152)
T cd02962 110 PTIILFQGGK-EVARRPY 126 (152)
T ss_pred CEEEEEECCE-EEEEEec
Confidence 9999999876 7778876
No 28
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.83 E-value=1.6e-19 Score=126.93 Aligned_cols=95 Identities=22% Similarity=0.512 Sum_probs=82.4
Q ss_pred ChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHh-CCCeEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCc
Q 029208 99 STQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEE-HPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHG 177 (197)
Q Consensus 99 ~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~-~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~ 177 (197)
+.++|++.+.+..+++++|+||++||++|+.+.|.+++++++ ++++.++++|++++++++++|++.++||+++|++|+
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~- 79 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT- 79 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCE-
Confidence 457888988875579999999999999999999999999999 557999999999999999999999999999998765
Q ss_pred eEEEeecCccHHHHHhhh
Q 029208 178 QLESFSCSLAKVMLRILI 195 (197)
Q Consensus 178 ~~~~~~g~~~~~~l~~fI 195 (197)
.+.++.|. ..+++.+.|
T Consensus 80 ~~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 80 IVDRVSGA-DPKELAKKV 96 (97)
T ss_pred EEEEEeCC-CHHHHHHhh
Confidence 77788775 456666554
No 29
>PRK10996 thioredoxin 2; Provisional
Probab=99.83 E-value=1.2e-19 Score=136.65 Aligned_cols=96 Identities=18% Similarity=0.504 Sum_probs=87.3
Q ss_pred CChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC-CeEEEEEECCCCHHHHHHCCCCcccEEEEEeCCC
Q 029208 98 HSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP-EIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAH 176 (197)
Q Consensus 98 ~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~ 176 (197)
.+.++|++.+.+ +++++|+||++||++|+.+.|.+.++++++. ++.|+++|++++++++++|+|.++||+++|++|+
T Consensus 40 ~~~~~~~~~i~~--~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~ 117 (139)
T PRK10996 40 ATGETLDKLLQD--DLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQ 117 (139)
T ss_pred cCHHHHHHHHhC--CCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCE
Confidence 467788887754 7999999999999999999999999999876 4999999999999999999999999999998765
Q ss_pred ceEEEeecCccHHHHHhhhc
Q 029208 177 GQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 177 ~~~~~~~g~~~~~~l~~fI~ 196 (197)
.+..+.|..+++++..||+
T Consensus 118 -~v~~~~G~~~~e~l~~~l~ 136 (139)
T PRK10996 118 -VVDMLNGAVPKAPFDSWLN 136 (139)
T ss_pred -EEEEEcCCCCHHHHHHHHH
Confidence 7889999999999999875
No 30
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.83 E-value=9.3e-20 Score=131.49 Aligned_cols=91 Identities=10% Similarity=0.056 Sum_probs=82.8
Q ss_pred ChHHHHHHHHhcCCCeEEEEEEcCC--ChhHHhhHHHHHHHHHhCCC-eEEEEEECCCCHHHHHHCCCCcccEEEEEeCC
Q 029208 99 STQEFLEALSQAGDRLVIVEFYGTW--CASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGA 175 (197)
Q Consensus 99 ~~~~~~~~l~~~~~k~vlv~F~a~w--C~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g 175 (197)
+..+|++.+. .+..++|.||++| |++|+.+.|.+++++++|++ +.|++||++++++++.+|+|+++||+++|++|
T Consensus 16 ~~~~~~~~~~--~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdG 93 (111)
T cd02965 16 DAATLDDWLA--AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDG 93 (111)
T ss_pred ccccHHHHHh--CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECC
Confidence 4567777773 3789999999997 99999999999999999987 88999999999999999999999999999998
Q ss_pred CceEEEeecCccHHHHH
Q 029208 176 HGQLESFSCSLAKVMLR 192 (197)
Q Consensus 176 ~~~~~~~~g~~~~~~l~ 192 (197)
+ .+..+.|..+.+++.
T Consensus 94 k-~v~~~~G~~~~~e~~ 109 (111)
T cd02965 94 R-YVGVLAGIRDWDEYV 109 (111)
T ss_pred E-EEEEEeCccCHHHHh
Confidence 6 889999999988875
No 31
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.82 E-value=1.9e-19 Score=129.93 Aligned_cols=99 Identities=20% Similarity=0.329 Sum_probs=84.8
Q ss_pred eCChHHHHHHHHh-cCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC--eEEEEEECCC-CHHHHH-HCCCCcccEEEE
Q 029208 97 IHSTQEFLEALSQ-AGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE--IVFLKVNFDE-NKPMCK-SLNVKVLPYFHF 171 (197)
Q Consensus 97 i~~~~~~~~~l~~-~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~d~-~~~l~~-~~~v~~~Pt~~~ 171 (197)
..+.++|+..+.. .++++++|.||++||++|+.+.|.+.++++++++ +.++.||++. +..+++ .++++++||+++
T Consensus 5 ~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~ 84 (109)
T cd02993 5 TLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILF 84 (109)
T ss_pred eccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEE
Confidence 3456688887753 3578999999999999999999999999998874 9999999997 577776 599999999999
Q ss_pred EeCCCceEEEeecC-ccHHHHHhhh
Q 029208 172 YRGAHGQLESFSCS-LAKVMLRILI 195 (197)
Q Consensus 172 ~~~g~~~~~~~~g~-~~~~~l~~fI 195 (197)
|++++.....|.|. .+.+.+..||
T Consensus 85 f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 85 FPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EcCCCCCceeccCCCCCHHHHHhhC
Confidence 99887778899985 7888898886
No 32
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.82 E-value=3.9e-19 Score=126.11 Aligned_cols=94 Identities=21% Similarity=0.505 Sum_probs=84.3
Q ss_pred ChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC--C-eEEEEEECCC--CHHHHHHCCCCcccEEEEEe
Q 029208 99 STQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--E-IVFLKVNFDE--NKPMCKSLNVKVLPYFHFYR 173 (197)
Q Consensus 99 ~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~--~-v~~~~Vd~d~--~~~l~~~~~v~~~Pt~~~~~ 173 (197)
+..+|++.+++ +++++|+||++||++|+++.|.+.++++.++ + +.++++|+++ +..++++++|+++||+++|+
T Consensus 6 ~~~~~~~~~~~--~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~ 83 (104)
T cd02997 6 TDEDFRKFLKK--EKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFE 83 (104)
T ss_pred chHhHHHHHhh--CCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEe
Confidence 45688888866 5699999999999999999999999998875 3 8899999998 89999999999999999998
Q ss_pred CCCceEEEeecCccHHHHHhhh
Q 029208 174 GAHGQLESFSCSLAKVMLRILI 195 (197)
Q Consensus 174 ~g~~~~~~~~g~~~~~~l~~fI 195 (197)
+|+ .+..+.|..+.+.+..||
T Consensus 84 ~g~-~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 84 NGK-FVEKYEGERTAEDIIEFM 104 (104)
T ss_pred CCC-eeEEeCCCCCHHHHHhhC
Confidence 876 688999999999998886
No 33
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.81 E-value=2.4e-19 Score=127.12 Aligned_cols=97 Identities=25% Similarity=0.415 Sum_probs=85.3
Q ss_pred eCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC---eEEEEEECCCCHHHHHHCCCCcccEEEEEe
Q 029208 97 IHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE---IVFLKVNFDENKPMCKSLNVKVLPYFHFYR 173 (197)
Q Consensus 97 i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~---v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~ 173 (197)
..+.++|++.+.+ .+++++|+||++||++|+.+.|.+.++++.+++ +.++++|++++ +++..+++.++||+++|+
T Consensus 4 ~l~~~~f~~~i~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~ 81 (104)
T cd02995 4 VVVGKNFDEVVLD-SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFP 81 (104)
T ss_pred EEchhhhHHHHhC-CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEc
Confidence 3456789888876 368999999999999999999999999998764 99999999987 688899999999999998
Q ss_pred CCC-ceEEEeecCccHHHHHhhh
Q 029208 174 GAH-GQLESFSCSLAKVMLRILI 195 (197)
Q Consensus 174 ~g~-~~~~~~~g~~~~~~l~~fI 195 (197)
+|+ .....|.|..+.+.+..||
T Consensus 82 ~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 82 AGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCCcCCceEccCCcCHHHHHhhC
Confidence 876 4567899999999999886
No 34
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.81 E-value=4.2e-19 Score=143.35 Aligned_cols=101 Identities=15% Similarity=0.287 Sum_probs=88.2
Q ss_pred EEeCChHHHHHHHHhc---CCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC-eEEEEEECCCCHHHHHHCCCCcccEEE
Q 029208 95 IDIHSTQEFLEALSQA---GDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFH 170 (197)
Q Consensus 95 ~~i~~~~~~~~~l~~~---~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~v~~~Pt~~ 170 (197)
+...+.++|++.+... .+++++|+||++||++|+.+.|.++++++++++ +.++++|++++++++++|+|.++||++
T Consensus 32 Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~ 111 (224)
T PTZ00443 32 LVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTLL 111 (224)
T ss_pred cEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEEE
Confidence 3444688999988642 258999999999999999999999999999986 899999999999999999999999999
Q ss_pred EEeCCCceEEEeecCccHHHHHhhhc
Q 029208 171 FYRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 171 ~~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
+|++|+ .+..+.|..+.+++.+|+.
T Consensus 112 ~f~~G~-~v~~~~G~~s~e~L~~fi~ 136 (224)
T PTZ00443 112 LFDKGK-MYQYEGGDRSTEKLAAFAL 136 (224)
T ss_pred EEECCE-EEEeeCCCCCHHHHHHHHH
Confidence 999765 6667778889999988863
No 35
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.81 E-value=3.6e-19 Score=126.26 Aligned_cols=96 Identities=25% Similarity=0.491 Sum_probs=86.3
Q ss_pred ChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC---CeEEEEEECCC-CHHHHHHCCCCcccEEEEEeC
Q 029208 99 STQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP---EIVFLKVNFDE-NKPMCKSLNVKVLPYFHFYRG 174 (197)
Q Consensus 99 ~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~---~v~~~~Vd~d~-~~~l~~~~~v~~~Pt~~~~~~ 174 (197)
+.++|++.+.+ .+++++|+||++||++|+.+.|.+.+++++++ ++.++++|+++ ++.++++|+|.++||+++|++
T Consensus 6 ~~~~~~~~~~~-~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~~ 84 (105)
T cd02998 6 TDSNFDKVVGD-DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPK 84 (105)
T ss_pred chhcHHHHhcC-CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEEeC
Confidence 45688887765 46799999999999999999999999999875 49999999999 999999999999999999998
Q ss_pred CCceEEEeecCccHHHHHhhh
Q 029208 175 AHGQLESFSCSLAKVMLRILI 195 (197)
Q Consensus 175 g~~~~~~~~g~~~~~~l~~fI 195 (197)
+++....+.|..+.+++.+||
T Consensus 85 ~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 85 GSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CCCCccccCCccCHHHHHhhC
Confidence 876788999999999999886
No 36
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.80 E-value=1.1e-18 Score=122.63 Aligned_cols=96 Identities=26% Similarity=0.606 Sum_probs=85.9
Q ss_pred ChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC-CeEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCc
Q 029208 99 STQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP-EIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHG 177 (197)
Q Consensus 99 ~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~ 177 (197)
+.+++.+.+.+ .+++++|+||++||++|+.+.|.+.+++++++ ++.|+.+|+++++.++++|+|.++||+++|++|+
T Consensus 2 ~~~~~~~~~~~-~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~- 79 (101)
T TIGR01068 2 TDANFDETIAS-SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK- 79 (101)
T ss_pred CHHHHHHHHhh-cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc-
Confidence 45678888876 46799999999999999999999999998887 4999999999999999999999999999998765
Q ss_pred eEEEeecCccHHHHHhhhc
Q 029208 178 QLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 178 ~~~~~~g~~~~~~l~~fI~ 196 (197)
....+.|..+.+.+..||+
T Consensus 80 ~~~~~~g~~~~~~l~~~l~ 98 (101)
T TIGR01068 80 EVDRSVGALPKAALKQLIN 98 (101)
T ss_pred EeeeecCCCCHHHHHHHHH
Confidence 6788889999899988875
No 37
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.80 E-value=6.4e-19 Score=124.33 Aligned_cols=95 Identities=22% Similarity=0.458 Sum_probs=86.3
Q ss_pred ChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC---eEEEEEECCCCHHHHHHCCCCcccEEEEEeCC
Q 029208 99 STQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE---IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGA 175 (197)
Q Consensus 99 ~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~---v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g 175 (197)
+.++|++.+. ++++++|+||++||++|+.+.+.++++++.+++ +.++.+|+++++.++++|+|.++|++++|++|
T Consensus 2 ~~~~~~~~~~--~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 2 TASNFDDIVL--SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred chhhHHHHhc--cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 4568888876 489999999999999999999999999998874 99999999999999999999999999999988
Q ss_pred CceEEEeecCccHHHHHhhhc
Q 029208 176 HGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 176 ~~~~~~~~g~~~~~~l~~fI~ 196 (197)
+. +..+.|..+.+++..||+
T Consensus 80 ~~-~~~~~g~~~~~~l~~~i~ 99 (102)
T TIGR01126 80 KK-PVDYEGGRDLEAIVEFVN 99 (102)
T ss_pred Cc-ceeecCCCCHHHHHHHHH
Confidence 75 788999999999998874
No 38
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2e-19 Score=144.12 Aligned_cols=95 Identities=32% Similarity=0.639 Sum_probs=89.3
Q ss_pred CeEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEEEE
Q 029208 93 NMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFY 172 (197)
Q Consensus 93 ~~~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~ 172 (197)
.++.|.+..+|+..+.....+.++|+|+|+||++|+.+.|.|..++.+|++.+|++||+|+.+..+..+||...|||+||
T Consensus 2 ~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFiff 81 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIFF 81 (288)
T ss_pred CeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEEE
Confidence 47889999999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCceEEEeecCccH
Q 029208 173 RGAHGQLESFSCSLAK 188 (197)
Q Consensus 173 ~~g~~~~~~~~g~~~~ 188 (197)
.+|. .+..+.|....
T Consensus 82 ~ng~-kid~~qGAd~~ 96 (288)
T KOG0908|consen 82 RNGV-KIDQIQGADAS 96 (288)
T ss_pred ecCe-EeeeecCCCHH
Confidence 9987 78999988654
No 39
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.80 E-value=6.2e-19 Score=133.27 Aligned_cols=93 Identities=23% Similarity=0.402 Sum_probs=79.3
Q ss_pred HHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC-eEEEEEECCCC--HHHHHHCCCCcccEEEEEeCCCce
Q 029208 102 EFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDEN--KPMCKSLNVKVLPYFHFYRGAHGQ 178 (197)
Q Consensus 102 ~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~--~~l~~~~~v~~~Pt~~~~~~g~~~ 178 (197)
++++.+.. ++++||+||++||++|+.+.|.+.++++++.+ +.|+.||++.+ ..++++|+|.++||++||+++++.
T Consensus 12 ~~~~a~~~--gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~ 89 (142)
T cd02950 12 PPEVALSN--GKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE 89 (142)
T ss_pred CHHHHHhC--CCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence 45555543 89999999999999999999999999999875 78888888754 588999999999999999755568
Q ss_pred EEEeecCccHHHHHhhhc
Q 029208 179 LESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 179 ~~~~~g~~~~~~l~~fI~ 196 (197)
+..+.|..+.+++..+|+
T Consensus 90 v~~~~G~~~~~~l~~~l~ 107 (142)
T cd02950 90 EGQSIGLQPKQVLAQNLD 107 (142)
T ss_pred EEEEeCCCCHHHHHHHHH
Confidence 889999998888877763
No 40
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.80 E-value=3.8e-19 Score=126.95 Aligned_cols=94 Identities=18% Similarity=0.341 Sum_probs=81.3
Q ss_pred HHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHH---HHHHHhCC-CeEEEEEECCC----CHHHHHHCCCCcccEEEEE
Q 029208 101 QEFLEALSQAGDRLVIVEFYGTWCASCRALFPKL---CRTAEEHP-EIVFLKVNFDE----NKPMCKSLNVKVLPYFHFY 172 (197)
Q Consensus 101 ~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l---~~la~~~~-~v~~~~Vd~d~----~~~l~~~~~v~~~Pt~~~~ 172 (197)
++|.+.+.+ +++++|+||++||++|+.+.+.+ .++++.+. ++.++.||+++ ..+++++|+|.++||++||
T Consensus 2 ~~~~~~~~~--~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~ 79 (104)
T cd02953 2 AALAQALAQ--GKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY 79 (104)
T ss_pred HHHHHHHHc--CCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 467777755 79999999999999999999988 57777777 69999999987 5789999999999999999
Q ss_pred eC-CCceEEEeecCccHHHHHhhhc
Q 029208 173 RG-AHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 173 ~~-g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
++ +++.+.++.|..+.+++..+|.
T Consensus 80 ~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 80 GPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCCCcccccccCHHHHHHHhC
Confidence 86 4557889999999999998874
No 41
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.80 E-value=2.3e-18 Score=121.61 Aligned_cols=92 Identities=22% Similarity=0.458 Sum_probs=83.2
Q ss_pred HHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC-eEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCceEEE
Q 029208 103 FLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLES 181 (197)
Q Consensus 103 ~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~ 181 (197)
++..+.+ .+++++++||++||+.|+.+.|.++++++++.+ +.++++|+++++++.++++|.++||+++|++| +.+.+
T Consensus 5 ~~~~~~~-~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g-~~v~~ 82 (97)
T cd02949 5 LRKLYHE-SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDK-ELVKE 82 (97)
T ss_pred HHHHHHh-CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECC-eEEEE
Confidence 4455655 589999999999999999999999999999874 99999999999999999999999999999876 48899
Q ss_pred eecCccHHHHHhhhc
Q 029208 182 FSCSLAKVMLRILIQ 196 (197)
Q Consensus 182 ~~g~~~~~~l~~fI~ 196 (197)
+.|..+++++..|++
T Consensus 83 ~~g~~~~~~~~~~l~ 97 (97)
T cd02949 83 ISGVKMKSEYREFIE 97 (97)
T ss_pred EeCCccHHHHHHhhC
Confidence 999999999999875
No 42
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.79 E-value=1.5e-18 Score=135.44 Aligned_cols=93 Identities=24% Similarity=0.422 Sum_probs=82.1
Q ss_pred CCCeEEeCChHHHHHHHHhc-CCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEE
Q 029208 91 APNMIDIHSTQEFLEALSQA-GDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYF 169 (197)
Q Consensus 91 ~~~~~~i~~~~~~~~~l~~~-~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~ 169 (197)
...+..|.+.++|.+.+.+. .+.+|||+||++||++|+.+.|.+.+++++|++++|++||++++ +++.+|+|.++||+
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vPTl 139 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALPAL 139 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCCEE
Confidence 45678888879999998753 24699999999999999999999999999999999999999988 89999999999999
Q ss_pred EEEeCCCceEEEeecC
Q 029208 170 HFYRGAHGQLESFSCS 185 (197)
Q Consensus 170 ~~~~~g~~~~~~~~g~ 185 (197)
++|++|+ .+..+.|.
T Consensus 140 llyk~G~-~v~~~vG~ 154 (175)
T cd02987 140 LVYKGGE-LIGNFVRV 154 (175)
T ss_pred EEEECCE-EEEEEech
Confidence 9999886 67667654
No 43
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.78 E-value=2e-18 Score=120.54 Aligned_cols=95 Identities=25% Similarity=0.504 Sum_probs=85.7
Q ss_pred ChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhC---CCeEEEEEECCCCHHHHHHCCCCcccEEEEEeCC
Q 029208 99 STQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEH---PEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGA 175 (197)
Q Consensus 99 ~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~---~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g 175 (197)
+.++|.+.+.+ +++++|+||++||++|+.+.|.+.++++.+ .++.|+.+|++++..++++|+|.++||+++|+++
T Consensus 4 ~~~~~~~~i~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 4 TDDNFDELVKD--SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred cHHHHHHHHhC--CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 45688888876 459999999999999999999999999988 3599999999999999999999999999999988
Q ss_pred CceEEEeecCccHHHHHhhh
Q 029208 176 HGQLESFSCSLAKVMLRILI 195 (197)
Q Consensus 176 ~~~~~~~~g~~~~~~l~~fI 195 (197)
+.....+.|..+.+.+.+|+
T Consensus 82 ~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 82 SKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CcccccCCCCcCHHHHHhhC
Confidence 56888999999888888875
No 44
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.78 E-value=1.6e-18 Score=123.84 Aligned_cols=91 Identities=16% Similarity=0.372 Sum_probs=78.9
Q ss_pred HHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC----CeEEEEEECCCCHHHHHHCCCCcccEEEEEeCCC
Q 029208 101 QEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP----EIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAH 176 (197)
Q Consensus 101 ~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~ 176 (197)
++|++. . ++++++|+||++||++|+++.|.+++++++++ ++.++++|+++++.++++|+|.++||+++|+++
T Consensus 7 ~~~~~~-~--~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~- 82 (104)
T cd03000 7 DSFKDV-R--KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD- 82 (104)
T ss_pred hhhhhh-c--cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC-
Confidence 566663 2 36799999999999999999999999999873 389999999999999999999999999999654
Q ss_pred ceEEEeecCccHHHHHhhhc
Q 029208 177 GQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 177 ~~~~~~~g~~~~~~l~~fI~ 196 (197)
....+.|..+.+.+..|++
T Consensus 83 -~~~~~~G~~~~~~l~~~~~ 101 (104)
T cd03000 83 -LAYNYRGPRTKDDIVEFAN 101 (104)
T ss_pred -CceeecCCCCHHHHHHHHH
Confidence 3567899999999998875
No 45
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.77 E-value=5.1e-18 Score=123.48 Aligned_cols=92 Identities=17% Similarity=0.179 Sum_probs=78.5
Q ss_pred HHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCceE-EE
Q 029208 103 FLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQL-ES 181 (197)
Q Consensus 103 ~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~-~~ 181 (197)
|.+.+.. ++.++|+||++||++|+.+.|.++++++.++.+.|..+|++++++++++|+|.++||+++|++|+... ..
T Consensus 15 ~~~~l~~--~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~ 92 (113)
T cd02975 15 FFKEMKN--PVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIR 92 (113)
T ss_pred HHHHhCC--CeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEE
Confidence 4444533 67799999999999999999999999998877999999999999999999999999999999864221 26
Q ss_pred eecCccHHHHHhhhc
Q 029208 182 FSCSLAKVMLRILIQ 196 (197)
Q Consensus 182 ~~g~~~~~~l~~fI~ 196 (197)
+.|..+..++..||+
T Consensus 93 ~~G~~~~~el~~~i~ 107 (113)
T cd02975 93 YYGLPAGYEFASLIE 107 (113)
T ss_pred EEecCchHHHHHHHH
Confidence 889888888888874
No 46
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.5e-18 Score=152.39 Aligned_cols=126 Identities=24% Similarity=0.393 Sum_probs=104.5
Q ss_pred cccccchhhhhhhhcccCCchhhhcCCCCeEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC-
Q 029208 65 PRKRLISFKVHATLAETNQPKWWEKNAPNMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE- 143 (197)
Q Consensus 65 p~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~- 143 (197)
..+.++.|++.+..+++++|.-|+.. + +.+.-.++|++.+.+ .+|.|+|.||||||+||+++.|.+++|+++|++
T Consensus 341 f~~~~l~Gk~~p~~kSqpiPe~~~~~--p-VkvvVgknfd~iv~d-e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~ 416 (493)
T KOG0190|consen 341 FVKDFLDGKVKPHLKSQPIPEDNDRS--P-VKVVVGKNFDDIVLD-EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDD 416 (493)
T ss_pred HHHHHhcCccccccccCCCCcccccC--C-eEEEeecCHHHHhhc-cccceEEEEcCcccchhhhhhhHHHHHHHHhcCC
Confidence 44567888899999999999754322 2 334446788888877 589999999999999999999999999999874
Q ss_pred --eEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCc-eEEEeecCccHHHHHhhhc
Q 029208 144 --IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHG-QLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 144 --v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~-~~~~~~g~~~~~~l~~fI~ 196 (197)
+.++++|.+.|.. ....+.++|||.+|+.|++ .+..|.|..+.+++..||.
T Consensus 417 ~~vviAKmDaTaNd~--~~~~~~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~ 470 (493)
T KOG0190|consen 417 ENVVIAKMDATANDV--PSLKVDGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIK 470 (493)
T ss_pred CCcEEEEeccccccC--ccccccccceEEEecCCCCCCCcccCCCcchHHHHhhhc
Confidence 9999999999865 4557788999999998864 4788999999999999885
No 47
>PTZ00102 disulphide isomerase; Provisional
Probab=99.76 E-value=5.6e-18 Score=150.26 Aligned_cols=125 Identities=18% Similarity=0.315 Sum_probs=101.8
Q ss_pred cccchhhhhhhhcccCCchhhhcCCCCeEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC---
Q 029208 67 KRLISFKVHATLAETNQPKWWEKNAPNMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE--- 143 (197)
Q Consensus 67 ~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~--- 143 (197)
+.+..++..+..++++.|.- ...-+...+.++|++.+.+ .+++++|+|||+||++|+.+.|.++++++.+++
T Consensus 335 ~~~~~gk~~~~~~se~~p~~----~~~~v~~l~~~~f~~~v~~-~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~ 409 (477)
T PTZ00102 335 KDVEAGKVEKSIKSEPIPEE----QDGPVKVVVGNTFEEIVFK-SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDS 409 (477)
T ss_pred HHHhCCCCCcccccCCCCCC----CCCCeEEecccchHHHHhc-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCc
Confidence 34555555566666665532 1233445567889888765 479999999999999999999999999988753
Q ss_pred eEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCceEEEeecCccHHHHHhhhc
Q 029208 144 IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 144 v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
+.++++|++.+...+++++++++||+++|++|++....+.|..+.+.+.+||+
T Consensus 410 v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~ 462 (477)
T PTZ00102 410 IIVAKMNGTANETPLEEFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVN 462 (477)
T ss_pred EEEEEEECCCCccchhcCCCcccCeEEEEECCCcceeEecCcCCHHHHHHHHH
Confidence 89999999999999999999999999999998766678999999999999885
No 48
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.75 E-value=2.5e-17 Score=112.82 Aligned_cols=92 Identities=30% Similarity=0.659 Sum_probs=83.2
Q ss_pred HHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCceEEE
Q 029208 102 EFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLES 181 (197)
Q Consensus 102 ~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~ 181 (197)
+|.+.+.+ +++++|+||++||++|+.+.+.+.+++++.+++.++.+|++++..++++|++.++||+++|++|+ .+..
T Consensus 2 ~~~~~~~~--~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~-~~~~ 78 (93)
T cd02947 2 EFEELIKS--AKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGK-EVDR 78 (93)
T ss_pred chHHHHhc--CCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCE-EEEE
Confidence 46666766 48999999999999999999999999998778999999999999999999999999999998875 7888
Q ss_pred eecCccHHHHHhhhc
Q 029208 182 FSCSLAKVMLRILIQ 196 (197)
Q Consensus 182 ~~g~~~~~~l~~fI~ 196 (197)
+.|..+.+.+..||+
T Consensus 79 ~~g~~~~~~l~~~i~ 93 (93)
T cd02947 79 VVGADPKEELEEFLE 93 (93)
T ss_pred EecCCCHHHHHHHhC
Confidence 999998899998874
No 49
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.74 E-value=2.2e-17 Score=121.61 Aligned_cols=94 Identities=15% Similarity=0.261 Sum_probs=78.5
Q ss_pred HHHHHHHHhcCC-CeEEEEEEcCCChhHHhhHHHHH---HHHHhCC-CeEEEEEECCCC-------------HHHHHHCC
Q 029208 101 QEFLEALSQAGD-RLVIVEFYGTWCASCRALFPKLC---RTAEEHP-EIVFLKVNFDEN-------------KPMCKSLN 162 (197)
Q Consensus 101 ~~~~~~l~~~~~-k~vlv~F~a~wC~~Ck~~~p~l~---~la~~~~-~v~~~~Vd~d~~-------------~~l~~~~~ 162 (197)
+++.+++++ + ++++|+||++||++|+.+.|.+. ++.+.+. ++.++++|++++ .+++.+|+
T Consensus 4 ~~~~~a~~~--~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~ 81 (125)
T cd02951 4 EDLAEAAAD--GKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR 81 (125)
T ss_pred HHHHHHHHc--CCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC
Confidence 456666655 6 99999999999999999999885 5555554 588999999864 68899999
Q ss_pred CCcccEEEEEeCC-CceEEEeecCccHHHHHhhhc
Q 029208 163 VKVLPYFHFYRGA-HGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 163 v~~~Pt~~~~~~g-~~~~~~~~g~~~~~~l~~fI~ 196 (197)
|.++||++||+++ ++.+.++.|..+.+++..+|+
T Consensus 82 v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~ 116 (125)
T cd02951 82 VRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLE 116 (125)
T ss_pred CccccEEEEEcCCCCceeEEecCCCCHHHHHHHHH
Confidence 9999999999987 678889999999888887764
No 50
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.74 E-value=2.5e-17 Score=145.04 Aligned_cols=103 Identities=16% Similarity=0.262 Sum_probs=87.3
Q ss_pred eEEeCChHHHHHHHH-hcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC--eEEEEEECCCCH-HHH-HHCCCCcccE
Q 029208 94 MIDIHSTQEFLEALS-QAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE--IVFLKVNFDENK-PMC-KSLNVKVLPY 168 (197)
Q Consensus 94 ~~~i~~~~~~~~~l~-~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~d~~~-~l~-~~~~v~~~Pt 168 (197)
.+...+.++|++.+. +..++++||+|||+||++|+.+.|.|+++++++.+ +.|++||+|.+. +++ ++|+|.++||
T Consensus 352 ~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PT 431 (463)
T TIGR00424 352 NVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPT 431 (463)
T ss_pred CeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccce
Confidence 344456678999885 44689999999999999999999999999999864 899999999764 454 7899999999
Q ss_pred EEEEeCCCceEEEee-cCccHHHHHhhhc
Q 029208 169 FHFYRGAHGQLESFS-CSLAKVMLRILIQ 196 (197)
Q Consensus 169 ~~~~~~g~~~~~~~~-g~~~~~~l~~fI~ 196 (197)
++||++|+.....|. |..+.+.+..||+
T Consensus 432 ii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~ 460 (463)
T TIGR00424 432 ILFFPKHSSRPIKYPSEKRDVDSLMSFVN 460 (463)
T ss_pred EEEEECCCCCceeCCCCCCCHHHHHHHHH
Confidence 999999875567786 5899999999987
No 51
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.74 E-value=5.4e-17 Score=119.64 Aligned_cols=95 Identities=15% Similarity=0.153 Sum_probs=77.7
Q ss_pred CChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCH-----------HHHHHCC----
Q 029208 98 HSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENK-----------PMCKSLN---- 162 (197)
Q Consensus 98 ~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~-----------~l~~~~~---- 162 (197)
.+.+++.+.+.+ ++.++|+||++||++|+.+.|.+.+++++ .++.++.||++.+. ++.++|+
T Consensus 11 it~~~~~~~i~~--~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (122)
T TIGR01295 11 TTVVRALEALDK--KETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTS 87 (122)
T ss_pred cCHHHHHHHHHc--CCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCccc
Confidence 456788888875 78899999999999999999999999998 45778888887542 4556665
Q ss_pred CCcccEEEEEeCCCceEEEeec-CccHHHHHhhhc
Q 029208 163 VKVLPYFHFYRGAHGQLESFSC-SLAKVMLRILIQ 196 (197)
Q Consensus 163 v~~~Pt~~~~~~g~~~~~~~~g-~~~~~~l~~fI~ 196 (197)
|.++||+++|++|+ ++.+..| ..+.+++..|+.
T Consensus 88 i~~~PT~v~~k~Gk-~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 88 FMGTPTFVHITDGK-QVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCCCCEEEEEeCCe-EEEEEeCCCCCHHHHHHHhh
Confidence 55699999999987 7778877 566999998874
No 52
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=6.8e-18 Score=148.35 Aligned_cols=102 Identities=21% Similarity=0.459 Sum_probs=92.5
Q ss_pred CCeEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC----CeEEEEEECCCCHHHHHHCCCCccc
Q 029208 92 PNMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP----EIVFLKVNFDENKPMCKSLNVKVLP 167 (197)
Q Consensus 92 ~~~~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~d~~~~l~~~~~v~~~P 167 (197)
...+.+.+.++|++.+.. +..++|.||||||+||+++.|.+++.++.+. .+.+++||++++.++|.+|+|+|+|
T Consensus 24 ~~~Vl~Lt~dnf~~~i~~--~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 24 EEDVLVLTKDNFKETING--HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP 101 (493)
T ss_pred ccceEEEecccHHHHhcc--CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence 456777788999999976 6899999999999999999999999998764 4999999999999999999999999
Q ss_pred EEEEEeCCCceEEEeecCccHHHHHhhhc
Q 029208 168 YFHFYRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 168 t~~~~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
|+.+|++|+. ...|.|....+.+..|+.
T Consensus 102 TlkiFrnG~~-~~~Y~G~r~adgIv~wl~ 129 (493)
T KOG0190|consen 102 TLKIFRNGRS-AQDYNGPREADGIVKWLK 129 (493)
T ss_pred eEEEEecCCc-ceeccCcccHHHHHHHHH
Confidence 9999999984 789999999999998873
No 53
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.73 E-value=2.8e-17 Score=120.39 Aligned_cols=99 Identities=19% Similarity=0.476 Sum_probs=81.1
Q ss_pred EEeCChHHHHHHHHhcCCCeEEEEEEc-------CCChhHHhhHHHHHHHHHhCC-CeEEEEEECCC-------CHHHHH
Q 029208 95 IDIHSTQEFLEALSQAGDRLVIVEFYG-------TWCASCRALFPKLCRTAEEHP-EIVFLKVNFDE-------NKPMCK 159 (197)
Q Consensus 95 ~~i~~~~~~~~~l~~~~~k~vlv~F~a-------~wC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~-------~~~l~~ 159 (197)
..+.+.++|.+.+.+.++++++|+||| +||++|+.+.|.+++++++++ ++.|++||+++ +.++.+
T Consensus 4 ~~~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~ 83 (119)
T cd02952 4 TAVRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRT 83 (119)
T ss_pred ccccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHh
Confidence 456788999999987667999999999 999999999999999999999 69999999976 468999
Q ss_pred HCCCC-cccEEEEEeCCCceEEEeecCccHHHHHhhh
Q 029208 160 SLNVK-VLPYFHFYRGAHGQLESFSCSLAKVMLRILI 195 (197)
Q Consensus 160 ~~~v~-~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~fI 195 (197)
+++|. ++||+++|++++ .+.... -.+...+..|+
T Consensus 84 ~~~I~~~iPT~~~~~~~~-~l~~~~-c~~~~~~~~~~ 118 (119)
T cd02952 84 DPKLTTGVPTLLRWKTPQ-RLVEDE-CLQADLVEMFF 118 (119)
T ss_pred ccCcccCCCEEEEEcCCc-eecchh-hcCHHHHHHhh
Confidence 99998 999999997665 333332 24555555543
No 54
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.73 E-value=3.1e-17 Score=119.43 Aligned_cols=95 Identities=12% Similarity=0.236 Sum_probs=81.7
Q ss_pred eCChHHHHHHHHhcCCCeEEEEEEc--CCCh---hHHhhHHHHHHHHHhCCCeEEEEEEC-----CCCHHHHHHCCCC--
Q 029208 97 IHSTQEFLEALSQAGDRLVIVEFYG--TWCA---SCRALFPKLCRTAEEHPEIVFLKVNF-----DENKPMCKSLNVK-- 164 (197)
Q Consensus 97 i~~~~~~~~~l~~~~~k~vlv~F~a--~wC~---~Ck~~~p~l~~la~~~~~v~~~~Vd~-----d~~~~l~~~~~v~-- 164 (197)
..+.++|++.+.+ ++.+||.||| |||+ +|+++.|.+.+.+.. +.+++||+ .++.+|+++|+|+
T Consensus 5 ~L~~~nF~~~v~~--~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~---v~lakVd~~d~~~~~~~~L~~~y~I~~~ 79 (116)
T cd03007 5 DLDTVTFYKVIPK--FKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD---LLVAEVGIKDYGEKLNMELGERYKLDKE 79 (116)
T ss_pred ECChhhHHHHHhc--CCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc---eEEEEEecccccchhhHHHHHHhCCCcC
Confidence 4578899999976 6889999999 9999 999999888776643 89999999 4578899999999
Q ss_pred cccEEEEEeCCC-ceEEEeecC-ccHHHHHhhhc
Q 029208 165 VLPYFHFYRGAH-GQLESFSCS-LAKVMLRILIQ 196 (197)
Q Consensus 165 ~~Pt~~~~~~g~-~~~~~~~g~-~~~~~l~~fI~ 196 (197)
++||+.+|++|+ .....|.|. .+.+.|..||+
T Consensus 80 gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~ 113 (116)
T cd03007 80 SYPVIYLFHGGDFENPVPYSGADVTVDALQRFLK 113 (116)
T ss_pred CCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHH
Confidence 999999999884 345789996 99999999985
No 55
>PLN02309 5'-adenylylsulfate reductase
Probab=99.72 E-value=1e-16 Score=141.16 Aligned_cols=101 Identities=17% Similarity=0.269 Sum_probs=87.0
Q ss_pred EeCChHHHHHHHH-hcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC--CeEEEEEECC-CCHHHHH-HCCCCcccEEE
Q 029208 96 DIHSTQEFLEALS-QAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFD-ENKPMCK-SLNVKVLPYFH 170 (197)
Q Consensus 96 ~i~~~~~~~~~l~-~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d-~~~~l~~-~~~v~~~Pt~~ 170 (197)
...+.++|++.+. ...++++||+||++||++|+.+.|.|+++++++. ++.|+++|++ .+.++++ +|+|.++||++
T Consensus 348 v~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil 427 (457)
T PLN02309 348 VALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTIL 427 (457)
T ss_pred EECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEE
Confidence 3456678888875 3458999999999999999999999999999986 3999999999 7788886 69999999999
Q ss_pred EEeCCCceEEEeec-CccHHHHHhhhc
Q 029208 171 FYRGAHGQLESFSC-SLAKVMLRILIQ 196 (197)
Q Consensus 171 ~~~~g~~~~~~~~g-~~~~~~l~~fI~ 196 (197)
||++|......|.| ..+.+.+..||+
T Consensus 428 ~f~~g~~~~v~Y~~~~R~~~~L~~fv~ 454 (457)
T PLN02309 428 LFPKNSSRPIKYPSEKRDVDSLLSFVN 454 (457)
T ss_pred EEeCCCCCeeecCCCCcCHHHHHHHHH
Confidence 99988766677864 689999999985
No 56
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.71 E-value=8e-17 Score=117.32 Aligned_cols=79 Identities=25% Similarity=0.543 Sum_probs=69.1
Q ss_pred eCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC---C-eEEEEEECC--CCHHHHHHCCCCcccEEE
Q 029208 97 IHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP---E-IVFLKVNFD--ENKPMCKSLNVKVLPYFH 170 (197)
Q Consensus 97 i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~---~-v~~~~Vd~d--~~~~l~~~~~v~~~Pt~~ 170 (197)
..+.++|++.+.+. +++++|+||++||++|+.+.|.+++++++++ + +.|+++|++ ++.+++++|+|+++||++
T Consensus 5 ~l~~~~f~~~i~~~-~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~ 83 (114)
T cd02992 5 VLDAASFNSALLGS-PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLR 83 (114)
T ss_pred ECCHHhHHHHHhcC-CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEE
Confidence 34677999998874 5899999999999999999999999998764 3 889999985 467899999999999999
Q ss_pred EEeCCC
Q 029208 171 FYRGAH 176 (197)
Q Consensus 171 ~~~~g~ 176 (197)
+|+++.
T Consensus 84 lf~~~~ 89 (114)
T cd02992 84 YFPPFS 89 (114)
T ss_pred EECCCC
Confidence 998876
No 57
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.71 E-value=1.4e-16 Score=126.08 Aligned_cols=89 Identities=24% Similarity=0.389 Sum_probs=75.1
Q ss_pred CCeEEeCChHHHHHHHHhc-CCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEE
Q 029208 92 PNMIDIHSTQEFLEALSQA-GDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFH 170 (197)
Q Consensus 92 ~~~~~i~~~~~~~~~l~~~-~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~ 170 (197)
..+..| +.++|...+.+. ++.+|||+||++||++|+.+.|.|.+++++|++++|++||++.. ..+|++.++||++
T Consensus 82 G~v~ei-s~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~~lPTll 157 (192)
T cd02988 82 GEVYEI-SKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDKNLPTIL 157 (192)
T ss_pred CeEEEe-CHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCCCCCEEE
Confidence 456666 567777766543 34699999999999999999999999999999999999999854 5899999999999
Q ss_pred EEeCCCceEEEeecC
Q 029208 171 FYRGAHGQLESFSCS 185 (197)
Q Consensus 171 ~~~~g~~~~~~~~g~ 185 (197)
+|++|+ .+..+.|.
T Consensus 158 iyk~G~-~v~~ivG~ 171 (192)
T cd02988 158 VYRNGD-IVKQFIGL 171 (192)
T ss_pred EEECCE-EEEEEeCc
Confidence 999986 77777764
No 58
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.69 E-value=2.2e-16 Score=138.92 Aligned_cols=99 Identities=21% Similarity=0.470 Sum_probs=87.4
Q ss_pred EeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC----CeEEEEEECCCCHHHHHHCCCCcccEEEE
Q 029208 96 DIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP----EIVFLKVNFDENKPMCKSLNVKVLPYFHF 171 (197)
Q Consensus 96 ~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~ 171 (197)
...+.++|.+.+.+ +++++|+|||+||++|+.+.|.+.++++.+. ++.|++|||+++.+++++|+|.++||+++
T Consensus 4 ~~l~~~~~~~~i~~--~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 4 LVLTKDNFDDFIKS--HEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI 81 (462)
T ss_pred eECCHHHHHHHHhc--CCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence 34567899998865 6899999999999999999999999887653 39999999999999999999999999999
Q ss_pred EeCCCceEEEeecCccHHHHHhhhc
Q 029208 172 YRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 172 ~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
|++|+..+..|.|..+.+.+.+|++
T Consensus 82 ~~~g~~~~~~~~g~~~~~~l~~~i~ 106 (462)
T TIGR01130 82 FRNGEDSVSDYNGPRDADGIVKYMK 106 (462)
T ss_pred EeCCccceeEecCCCCHHHHHHHHH
Confidence 9988743788999999999988874
No 59
>PTZ00102 disulphide isomerase; Provisional
Probab=99.67 E-value=4.4e-16 Score=138.15 Aligned_cols=98 Identities=21% Similarity=0.504 Sum_probs=86.4
Q ss_pred EEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhC----CCeEEEEEECCCCHHHHHHCCCCcccEEE
Q 029208 95 IDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEH----PEIVFLKVNFDENKPMCKSLNVKVLPYFH 170 (197)
Q Consensus 95 ~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~----~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~ 170 (197)
+...+.++|++.+.+ ++.++|+|||+||++|+++.|.+.++++.+ .++.+++|||+++.+++++|+|.++||++
T Consensus 34 v~~l~~~~f~~~i~~--~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~ 111 (477)
T PTZ00102 34 VTVLTDSTFDKFITE--NEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIK 111 (477)
T ss_pred cEEcchhhHHHHHhc--CCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEE
Confidence 445567899998865 689999999999999999999999988664 34999999999999999999999999999
Q ss_pred EEeCCCceEEEeecCccHHHHHhhhc
Q 029208 171 FYRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 171 ~~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
+|++|+ .+ .|.|..+.+.+.+|++
T Consensus 112 ~~~~g~-~~-~y~g~~~~~~l~~~l~ 135 (477)
T PTZ00102 112 FFNKGN-PV-NYSGGRTADGIVSWIK 135 (477)
T ss_pred EEECCc-eE-EecCCCCHHHHHHHHH
Confidence 999886 44 8999999999998874
No 60
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.66 E-value=8.2e-16 Score=139.65 Aligned_cols=105 Identities=18% Similarity=0.365 Sum_probs=88.9
Q ss_pred CCeEEeCChHHHHHHHHh--cCCCeEEEEEEcCCChhHHhhHHHH---HHHHHhCCCeEEEEEECCCC----HHHHHHCC
Q 029208 92 PNMIDIHSTQEFLEALSQ--AGDRLVIVEFYGTWCASCRALFPKL---CRTAEEHPEIVFLKVNFDEN----KPMCKSLN 162 (197)
Q Consensus 92 ~~~~~i~~~~~~~~~l~~--~~~k~vlv~F~a~wC~~Ck~~~p~l---~~la~~~~~v~~~~Vd~d~~----~~l~~~~~ 162 (197)
..+..+.+.+++++.+++ .++|+|+|+|||+||++|+.+.+.+ .++.++++++.++++|++++ .+++++|+
T Consensus 452 ~~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~ 531 (571)
T PRK00293 452 LNFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYN 531 (571)
T ss_pred CCceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcC
Confidence 467889999999998864 3478999999999999999999876 67888888899999999854 67899999
Q ss_pred CCcccEEEEEeCCCce--EEEeecCccHHHHHhhhc
Q 029208 163 VKVLPYFHFYRGAHGQ--LESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 163 v~~~Pt~~~~~~g~~~--~~~~~g~~~~~~l~~fI~ 196 (197)
+.++||+++|++++++ ..++.|..+.+++.++++
T Consensus 532 v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~ 567 (571)
T PRK00293 532 VLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLR 567 (571)
T ss_pred CCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHH
Confidence 9999999999855545 367889999988887764
No 61
>PTZ00062 glutaredoxin; Provisional
Probab=99.64 E-value=1.8e-15 Score=120.52 Aligned_cols=81 Identities=14% Similarity=0.165 Sum_probs=72.4
Q ss_pred CChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCc
Q 029208 98 HSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHG 177 (197)
Q Consensus 98 ~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~ 177 (197)
.+.+++.+.+.. ..+.++++|||+||++|+.+.|.+.+++++|+++.|++||.+ |+|.++||++||++|+
T Consensus 4 ~~~ee~~~~i~~-~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~g~- 73 (204)
T PTZ00062 4 IKKEEKDKLIES-NTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQNSQ- 73 (204)
T ss_pred CCHHHHHHHHhc-CCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEECCE-
Confidence 567888888874 237789999999999999999999999999999999999987 9999999999999887
Q ss_pred eEEEeecCccH
Q 029208 178 QLESFSCSLAK 188 (197)
Q Consensus 178 ~~~~~~g~~~~ 188 (197)
.+.++.|..+.
T Consensus 74 ~i~r~~G~~~~ 84 (204)
T PTZ00062 74 LINSLEGCNTS 84 (204)
T ss_pred EEeeeeCCCHH
Confidence 88999987644
No 62
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.64 E-value=3.8e-16 Score=128.65 Aligned_cols=92 Identities=20% Similarity=0.434 Sum_probs=79.0
Q ss_pred HHHHHHHhc-CCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC----eEEEEEECCCCHHHHHHCCCCcccEEEEEeCCC
Q 029208 102 EFLEALSQA-GDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE----IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAH 176 (197)
Q Consensus 102 ~~~~~l~~~-~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~----v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~ 176 (197)
++++...+. .+..++|+||||||+|||++.|.|.++.-++++ +++.++|++..+.++.+++|+|+||+.||+++.
T Consensus 32 DLddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~ 111 (468)
T KOG4277|consen 32 DLDDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDH 111 (468)
T ss_pred hhhHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCe
Confidence 344444332 367999999999999999999999999877664 899999999999999999999999999998764
Q ss_pred ceEEEeecCccHHHHHhhh
Q 029208 177 GQLESFSCSLAKVMLRILI 195 (197)
Q Consensus 177 ~~~~~~~g~~~~~~l~~fI 195 (197)
...|.|...++.+.+|-
T Consensus 112 --a~dYRG~R~Kd~iieFA 128 (468)
T KOG4277|consen 112 --AIDYRGGREKDAIIEFA 128 (468)
T ss_pred --eeecCCCccHHHHHHHH
Confidence 68899999999998873
No 63
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.64 E-value=1e-15 Score=134.67 Aligned_cols=123 Identities=20% Similarity=0.348 Sum_probs=96.4
Q ss_pred cccchhhhhhhhcccCCchhhhcCCCCeEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC---
Q 029208 67 KRLISFKVHATLAETNQPKWWEKNAPNMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE--- 143 (197)
Q Consensus 67 ~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~--- 143 (197)
..+..|+..+..+++..|.- ....+...+.++|.+.+.+ .++.++|+||++||++|+.+.|.++++++.+.+
T Consensus 324 ~~~~~g~~~~~~~se~~p~~----~~~~v~~l~~~~f~~~v~~-~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~ 398 (462)
T TIGR01130 324 KDFLDGKLKPYLKSEPIPED----DEGPVKVLVGKNFDEIVLD-ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAES 398 (462)
T ss_pred HHHhcCCCCeeeccCCCCcc----CCCccEEeeCcCHHHHhcc-CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCC
Confidence 34555566666666655531 2223344567889888866 489999999999999999999999999998764
Q ss_pred -eEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCc-eEEEeecCccHHHHHhhhc
Q 029208 144 -IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHG-QLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 144 -v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~-~~~~~~g~~~~~~l~~fI~ 196 (197)
+.|+++|++.+. +.. +++.++||+++|++|+. ....+.|..+.+.+.+||+
T Consensus 399 ~i~~~~id~~~n~-~~~-~~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~ 451 (462)
T TIGR01130 399 DVVIAKMDATAND-VPP-FEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIA 451 (462)
T ss_pred cEEEEEEECCCCc-cCC-CCccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHH
Confidence 899999999874 334 99999999999998875 3578899999999999874
No 64
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.61 E-value=5.1e-15 Score=104.94 Aligned_cols=85 Identities=16% Similarity=0.213 Sum_probs=74.0
Q ss_pred CCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC-eEEEEEECCCCHHHHHHCCCC--cccEEEEEeCCCc-eEEEeecCcc
Q 029208 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVK--VLPYFHFYRGAHG-QLESFSCSLA 187 (197)
Q Consensus 112 ~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~v~--~~Pt~~~~~~g~~-~~~~~~g~~~ 187 (197)
++++++.|+++||++|+.+.|.++++++++.+ +.|+.||+++++++++.|++. ++||+++++++++ ......|..+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 68999999999999999999999999999976 999999999999999999999 9999999998422 3333344458
Q ss_pred HHHHHhhhc
Q 029208 188 KVMLRILIQ 196 (197)
Q Consensus 188 ~~~l~~fI~ 196 (197)
.+.+.+||+
T Consensus 92 ~~~l~~fi~ 100 (103)
T cd02982 92 AESLEEFVE 100 (103)
T ss_pred HHHHHHHHH
Confidence 899999885
No 65
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.61 E-value=8.2e-15 Score=117.89 Aligned_cols=86 Identities=17% Similarity=0.207 Sum_probs=72.8
Q ss_pred CCCeEEEEEEc---CCChhHHhhHHHHHHHHHhCCC--eEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCceEEEeecC
Q 029208 111 GDRLVIVEFYG---TWCASCRALFPKLCRTAEEHPE--IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCS 185 (197)
Q Consensus 111 ~~k~vlv~F~a---~wC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~ 185 (197)
.+...++.|++ +||++|+.+.|.++++++++++ +.++.+|.+++++++++|+|.++||+++|++|+....++.|.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~ 97 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGI 97 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeec
Confidence 34556767888 9999999999999999999976 457777777999999999999999999999887333589999
Q ss_pred ccHHHHHhhhc
Q 029208 186 LAKVMLRILIQ 196 (197)
Q Consensus 186 ~~~~~l~~fI~ 196 (197)
.+.+++..||+
T Consensus 98 ~~~~~l~~~i~ 108 (215)
T TIGR02187 98 PAGYEFAALIE 108 (215)
T ss_pred CCHHHHHHHHH
Confidence 99888888764
No 66
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.60 E-value=1e-14 Score=99.14 Aligned_cols=77 Identities=19% Similarity=0.180 Sum_probs=67.4
Q ss_pred EEEEEEcCCChhHHhhHHHHHHHHHhCCC-eEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCceEEEeecCccHHHHHh
Q 029208 115 VIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKVMLRI 193 (197)
Q Consensus 115 vlv~F~a~wC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~ 193 (197)
.+..||++||++|+.+.|.+++++++++. +.+++||++++++++++|++.++||+++ +|+ ..+.|..+.+++..
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~---~~~~G~~~~~~l~~ 76 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD---VEFIGAPTKEELVE 76 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE---EEEecCCCHHHHHH
Confidence 36679999999999999999999998864 9999999999999999999999999986 443 37888888888888
Q ss_pred hhc
Q 029208 194 LIQ 196 (197)
Q Consensus 194 fI~ 196 (197)
+|+
T Consensus 77 ~l~ 79 (82)
T TIGR00411 77 AIK 79 (82)
T ss_pred HHH
Confidence 764
No 67
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.59 E-value=3.5e-15 Score=109.21 Aligned_cols=73 Identities=21% Similarity=0.439 Sum_probs=56.6
Q ss_pred CCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC-CeEEEEEECCCCH-HHHHHCCCCc--ccEEEEEeCCCceEEEee
Q 029208 111 GDRLVIVEFYGTWCASCRALFPKLCRTAEEHP-EIVFLKVNFDENK-PMCKSLNVKV--LPYFHFYRGAHGQLESFS 183 (197)
Q Consensus 111 ~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~-~l~~~~~v~~--~Pt~~~~~~g~~~~~~~~ 183 (197)
++++++|+|||+||++|+.+.|.+.+..+... +..|+.||++.+. ...+.|++.+ +||++||+++++.+.++.
T Consensus 18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~ 94 (117)
T cd02959 18 SGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEII 94 (117)
T ss_pred cCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhc
Confidence 48999999999999999999999998766432 3456667776554 4567899987 999999985555666433
No 68
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.56 E-value=5.9e-14 Score=116.68 Aligned_cols=90 Identities=14% Similarity=0.158 Sum_probs=72.6
Q ss_pred HHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCC-----------CHHHHHHCCCCcccEEEEEe
Q 029208 105 EALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDE-----------NKPMCKSLNVKVLPYFHFYR 173 (197)
Q Consensus 105 ~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~-----------~~~l~~~~~v~~~Pt~~~~~ 173 (197)
..+.+..++++||+||++||++|+.+.|.+.++++++. +.++.|++|. +..++++|+|.++||+++++
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~ 237 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLAD 237 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEE
Confidence 44555568999999999999999999999999999985 6666666654 35789999999999999999
Q ss_pred C-CCceEEEeecCccHHHHHhhh
Q 029208 174 G-AHGQLESFSCSLAKVMLRILI 195 (197)
Q Consensus 174 ~-g~~~~~~~~g~~~~~~l~~fI 195 (197)
+ ++.......|..+.+++...|
T Consensus 238 ~~~~~v~~v~~G~~s~~eL~~~i 260 (271)
T TIGR02740 238 PDPNQFTPIGFGVMSADELVDRI 260 (271)
T ss_pred CCCCEEEEEEeCCCCHHHHHHHH
Confidence 7 453334455888888887665
No 69
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.56 E-value=4.2e-14 Score=113.79 Aligned_cols=89 Identities=17% Similarity=0.208 Sum_probs=74.8
Q ss_pred HHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCceEEEee
Q 029208 104 LEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFS 183 (197)
Q Consensus 104 ~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~ 183 (197)
.+.+.+..+..+++.||++||++|+.+.+.+++++.+++++.+.++|.+++++++++|+|.++||+++++++. .+.
T Consensus 125 ~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~----~~~ 200 (215)
T TIGR02187 125 VELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVE----EFV 200 (215)
T ss_pred HHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE----EEE
Confidence 4444443344556669999999999999999999999888999999999999999999999999999996543 288
Q ss_pred cCccHHHHHhhhc
Q 029208 184 CSLAKVMLRILIQ 196 (197)
Q Consensus 184 g~~~~~~l~~fI~ 196 (197)
|..+.+++..||+
T Consensus 201 G~~~~~~l~~~l~ 213 (215)
T TIGR02187 201 GAYPEEQFLEYIL 213 (215)
T ss_pred CCCCHHHHHHHHH
Confidence 9999999888874
No 70
>PHA02125 thioredoxin-like protein
Probab=99.54 E-value=7e-14 Score=94.29 Aligned_cols=72 Identities=22% Similarity=0.457 Sum_probs=58.7
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCceEEEeecCcc-HHHHHhh
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLA-KVMLRIL 194 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~~~-~~~l~~f 194 (197)
+++||++||++|+.+.|.++++. +.+++||.+++++++++|+|.++||++ +| +.+.++.|... ..++++-
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g-~~~~~~~G~~~~~~~l~~~ 72 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NT-STLDRFTGVPRNVAELKEK 72 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CC-EEEEEEeCCCCcHHHHHHH
Confidence 78999999999999999998663 568999999999999999999999998 33 46678888533 3666655
Q ss_pred hc
Q 029208 195 IQ 196 (197)
Q Consensus 195 I~ 196 (197)
++
T Consensus 73 ~~ 74 (75)
T PHA02125 73 LG 74 (75)
T ss_pred hC
Confidence 43
No 71
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.53 E-value=8.9e-14 Score=102.71 Aligned_cols=84 Identities=15% Similarity=0.104 Sum_probs=65.7
Q ss_pred hHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHH-H--HHHHhC-CCeEEEEEECCCCHHHHH--------HCCCCccc
Q 029208 100 TQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKL-C--RTAEEH-PEIVFLKVNFDENKPMCK--------SLNVKVLP 167 (197)
Q Consensus 100 ~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l-~--~la~~~-~~v~~~~Vd~d~~~~l~~--------~~~v~~~P 167 (197)
.+.+.++.++ +|+|+|+|+++||++|+.|.+.. . ++++.. +++.++++|.++++++.+ .|++.|+|
T Consensus 5 ~eal~~Ak~~--~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~P 82 (124)
T cd02955 5 EEAFEKARRE--DKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWP 82 (124)
T ss_pred HHHHHHHHHc--CCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCC
Confidence 4556555544 89999999999999999998743 2 555553 579999999998877755 36899999
Q ss_pred EEEEEeCCCceEEEeecC
Q 029208 168 YFHFYRGAHGQLESFSCS 185 (197)
Q Consensus 168 t~~~~~~g~~~~~~~~g~ 185 (197)
|++|+++.++.+...++.
T Consensus 83 t~vfl~~~G~~~~~~~~~ 100 (124)
T cd02955 83 LNVFLTPDLKPFFGGTYF 100 (124)
T ss_pred EEEEECCCCCEEeeeeec
Confidence 999999887777666544
No 72
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.52 E-value=1.4e-13 Score=101.37 Aligned_cols=82 Identities=18% Similarity=0.325 Sum_probs=67.7
Q ss_pred hcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEEC-----------------------CCCHHHHHHCCCCc
Q 029208 109 QAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNF-----------------------DENKPMCKSLNVKV 165 (197)
Q Consensus 109 ~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~-----------------------d~~~~l~~~~~v~~ 165 (197)
+.++++++|+||++||++|+.+.|.+.++.+++ ++.++.|+. |.+..+++.|++.+
T Consensus 22 ~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~ 100 (127)
T cd03010 22 DLKGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYG 100 (127)
T ss_pred HcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCC
Confidence 335789999999999999999999999998887 466666663 44556788999999
Q ss_pred ccEEEEEeCCCceEEEeecCccHHHH
Q 029208 166 LPYFHFYRGAHGQLESFSCSLAKVML 191 (197)
Q Consensus 166 ~Pt~~~~~~g~~~~~~~~g~~~~~~l 191 (197)
+|+.+++++.+..+..+.|..+++.+
T Consensus 101 ~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 101 VPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCeEEEECCCceEEEEEeccCChHhc
Confidence 99888887666688899998887754
No 73
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.52 E-value=9.7e-14 Score=123.96 Aligned_cols=86 Identities=19% Similarity=0.379 Sum_probs=74.2
Q ss_pred CCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC--CeEEEEEE----------------------------CCCCHHHHHH
Q 029208 111 GDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVN----------------------------FDENKPMCKS 160 (197)
Q Consensus 111 ~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd----------------------------~d~~~~l~~~ 160 (197)
+++++||+|||+||++|+.+.|.+.++.++++ ++.++.|. +|.+..+.+.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 58999999999999999999999999999876 46665543 3456678899
Q ss_pred CCCCcccEEEEEeCCCceEEEeecCccHHHHHhhhc
Q 029208 161 LNVKVLPYFHFYRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 161 ~~v~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
|+|.++||+++++++++.+..+.|..+.++++.+|+
T Consensus 135 fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 135 LNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred cCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 999999999988776668899999999999998875
No 74
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.52 E-value=3.3e-14 Score=117.15 Aligned_cols=95 Identities=22% Similarity=0.440 Sum_probs=84.1
Q ss_pred hHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHh----CCC--eEEEEEECCCCHHHHHHCCCCcccEEEEEe
Q 029208 100 TQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEE----HPE--IVFLKVNFDENKPMCKSLNVKVLPYFHFYR 173 (197)
Q Consensus 100 ~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~----~~~--v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~ 173 (197)
.++++..+.. ...|+|.|||+||.-.+.+.|.|++.+++ +|+ +.+++|||+.+..++.+|.|..+||+.+|.
T Consensus 3 ~~N~~~il~s--~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 3 SENIDSILDS--NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred cccHHHhhcc--ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 4566666755 78999999999999999999999988764 663 999999999999999999999999999999
Q ss_pred CCCceEEEeecCccHHHHHhhhc
Q 029208 174 GAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 174 ~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
+|.-.-..|.|....+.+.+||+
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~ 103 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIE 103 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHH
Confidence 99855569999999999999885
No 75
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.51 E-value=1.9e-13 Score=107.53 Aligned_cols=84 Identities=19% Similarity=0.319 Sum_probs=69.7
Q ss_pred CCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCH-----------------------HHHHHCCCCccc
Q 029208 111 GDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENK-----------------------PMCKSLNVKVLP 167 (197)
Q Consensus 111 ~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~-----------------------~l~~~~~v~~~P 167 (197)
++++++|+||++||++|+++.|.+.++.++ ++.++.|+.+++. .+.+.|++.++|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 489999999999999999999999999763 6888888875432 245578999999
Q ss_pred EEEEEeCCCceEEEeecCccHHHHHhhhc
Q 029208 168 YFHFYRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 168 t~~~~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
+.+++++.+.....+.|..+.++++.+|+
T Consensus 145 ~t~vid~~G~i~~~~~G~~~~~~l~~~i~ 173 (185)
T PRK15412 145 ETFLIDGNGIIRYRHAGDLNPRVWESEIK 173 (185)
T ss_pred eEEEECCCceEEEEEecCCCHHHHHHHHH
Confidence 99999877768889999999988877663
No 76
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.51 E-value=1.8e-13 Score=104.63 Aligned_cols=84 Identities=15% Similarity=0.250 Sum_probs=65.1
Q ss_pred CCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCC------------HHHH-HHC---CCCcccEEEEEeCC
Q 029208 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN------------KPMC-KSL---NVKVLPYFHFYRGA 175 (197)
Q Consensus 112 ~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~------------~~l~-~~~---~v~~~Pt~~~~~~g 175 (197)
++..+|+|||+||++|+++.|.++++++++ ++.++.|+.|+. .... +.| ++.++||+++++..
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~ 128 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVN 128 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCC
Confidence 567799999999999999999999999998 456666666532 2333 345 88999999999876
Q ss_pred Cce-EEEeecCccHHHHHhhhc
Q 029208 176 HGQ-LESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 176 ~~~-~~~~~g~~~~~~l~~fI~ 196 (197)
++. .....|..+.+++...|+
T Consensus 129 G~~i~~~~~G~~s~~~l~~~I~ 150 (153)
T TIGR02738 129 TRKAYPVLQGAVDEAELANRMD 150 (153)
T ss_pred CCEEEEEeecccCHHHHHHHHH
Confidence 554 457889999888876653
No 77
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.50 E-value=6.1e-14 Score=100.91 Aligned_cols=85 Identities=20% Similarity=0.338 Sum_probs=65.1
Q ss_pred CCCeEEEEEEcCCChhHHhhHHHHHHH---HHhCC-CeEEEEEECCCC--------------------HHHHHHCCCCcc
Q 029208 111 GDRLVIVEFYGTWCASCRALFPKLCRT---AEEHP-EIVFLKVNFDEN--------------------KPMCKSLNVKVL 166 (197)
Q Consensus 111 ~~k~vlv~F~a~wC~~Ck~~~p~l~~l---a~~~~-~v~~~~Vd~d~~--------------------~~l~~~~~v~~~ 166 (197)
+++++++.||++||++|+.+.+.+.+. .+.+. ++.++.++++.. .++++.|+|.++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 589999999999999999999999864 44443 488888888753 358899999999
Q ss_pred cEEEEEeCCCceEEEeecCccHHHHHhhh
Q 029208 167 PYFHFYRGAHGQLESFSCSLAKVMLRILI 195 (197)
Q Consensus 167 Pt~~~~~~g~~~~~~~~g~~~~~~l~~fI 195 (197)
||++++++.++.+..+.|..+.+++..++
T Consensus 84 Pt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 84 PTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99999986566888999999999988764
No 78
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.49 E-value=2.4e-13 Score=103.03 Aligned_cols=73 Identities=16% Similarity=0.310 Sum_probs=58.7
Q ss_pred HHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhC---------CCeEEEEEECCCC-----------------------
Q 029208 107 LSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEH---------PEIVFLKVNFDEN----------------------- 154 (197)
Q Consensus 107 l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~---------~~v~~~~Vd~d~~----------------------- 154 (197)
+.+.++++++|+|||+||++|+++.|.+.++.+++ +++.++.|+.|++
T Consensus 20 ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~ 99 (146)
T cd03008 20 VARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDE 99 (146)
T ss_pred HHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccch
Confidence 34456899999999999999999999999876643 2488888887743
Q ss_pred --HHHHHHCCCCcccEEEEEeCCCceE
Q 029208 155 --KPMCKSLNVKVLPYFHFYRGAHGQL 179 (197)
Q Consensus 155 --~~l~~~~~v~~~Pt~~~~~~g~~~~ 179 (197)
..+.++|++.++||++++++.++.+
T Consensus 100 ~~~~l~~~y~v~~iPt~vlId~~G~Vv 126 (146)
T cd03008 100 FRRELEAQFSVEELPTVVVLKPDGDVL 126 (146)
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCcEE
Confidence 1467889999999999998766444
No 79
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.48 E-value=1.2e-13 Score=122.99 Aligned_cols=102 Identities=21% Similarity=0.388 Sum_probs=88.6
Q ss_pred EEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHH---HHHHhCCCeEEEEEECCCC----HHHHHHCCCCccc
Q 029208 95 IDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLC---RTAEEHPEIVFLKVNFDEN----KPMCKSLNVKVLP 167 (197)
Q Consensus 95 ~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~---~la~~~~~v~~~~Vd~d~~----~~l~~~~~v~~~P 167 (197)
..+.+..++++.++++++|+|+++|||+||-.||.+++... +.+.+..|++..++|.+++ .++.++||+-++|
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P 536 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP 536 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence 66777779999999977889999999999999999999876 5556778999999999875 4678999999999
Q ss_pred EEEEEeCCCceEEEeecCccHHHHHhhhc
Q 029208 168 YFHFYRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 168 t~~~~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
+++||..++++.....|.++.+.+.++++
T Consensus 537 ~~~ff~~~g~e~~~l~gf~~a~~~~~~l~ 565 (569)
T COG4232 537 TYLFFGPQGSEPEILTGFLTADAFLEHLE 565 (569)
T ss_pred EEEEECCCCCcCcCCcceecHHHHHHHHH
Confidence 99999977778777999999988887763
No 80
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.47 E-value=3.6e-13 Score=91.12 Aligned_cols=73 Identities=19% Similarity=0.262 Sum_probs=59.2
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCC-eEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCceEEEeecC-ccHHHHHh
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCS-LAKVMLRI 193 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~-~~~~~l~~ 193 (197)
.|.||++||++|+.+.|.+++++++++. +.+++|| +.+.+.+|++.++||+++ +|+ .+ +.|. ...+++.+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~-~~--~~G~~~~~~~l~~ 73 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGE-LV--IMGKIPSKEEIKE 73 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCE-EE--EEeccCCHHHHHH
Confidence 3789999999999999999999999874 8888887 344578899999999999 544 33 7775 45588887
Q ss_pred hhc
Q 029208 194 LIQ 196 (197)
Q Consensus 194 fI~ 196 (197)
+++
T Consensus 74 ~l~ 76 (76)
T TIGR00412 74 ILK 76 (76)
T ss_pred HhC
Confidence 763
No 81
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.47 E-value=4.8e-13 Score=104.05 Aligned_cols=84 Identities=20% Similarity=0.334 Sum_probs=68.2
Q ss_pred CCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECC-----------------------CCHHHHHHCCCCccc
Q 029208 111 GDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFD-----------------------ENKPMCKSLNVKVLP 167 (197)
Q Consensus 111 ~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d-----------------------~~~~l~~~~~v~~~P 167 (197)
++++++|+||++||++|+++.|.++++.++ ++.++.|+.+ .+..+.+.|++.++|
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P 139 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence 479999999999999999999999999764 4666666643 334567789999999
Q ss_pred EEEEEeCCCceEEEeecCccHHHHHhhhc
Q 029208 168 YFHFYRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 168 t~~~~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
++++++++++.+..+.|..+.+++.++|+
T Consensus 140 ~~~~id~~G~i~~~~~G~~~~~~l~~~l~ 168 (173)
T TIGR00385 140 ETFLVDGNGVILYRHAGPLNNEVWTEGFL 168 (173)
T ss_pred eEEEEcCCceEEEEEeccCCHHHHHHHHH
Confidence 98888766667888999999988877664
No 82
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.9e-13 Score=118.86 Aligned_cols=84 Identities=24% Similarity=0.496 Sum_probs=77.5
Q ss_pred CCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC-eEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCceEEEeecCccHH
Q 029208 111 GDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKV 189 (197)
Q Consensus 111 ~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~~~~~ 189 (197)
.+++++|+||++||++|+++.|.+.++++.+.+ +.++.||++++.++|++|+|.++||+.+|.++ .....+.|..+.+
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~-~~~~~~~~~~~~~ 124 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPG-KKPIDYSGPRNAE 124 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCC-CceeeccCcccHH
Confidence 378999999999999999999999999999887 99999999999999999999999999999988 5788888888888
Q ss_pred HHHhhh
Q 029208 190 MLRILI 195 (197)
Q Consensus 190 ~l~~fI 195 (197)
.+..|.
T Consensus 125 ~~~~~~ 130 (383)
T KOG0191|consen 125 SLAEFL 130 (383)
T ss_pred HHHHHH
Confidence 877765
No 83
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.46 E-value=4.8e-13 Score=99.06 Aligned_cols=71 Identities=18% Similarity=0.436 Sum_probs=57.6
Q ss_pred hcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC----CeEEEEEECCCC------------------------HHHHHH
Q 029208 109 QAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP----EIVFLKVNFDEN------------------------KPMCKS 160 (197)
Q Consensus 109 ~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~d~~------------------------~~l~~~ 160 (197)
+.++++++|+||++||++|+.+.|.+.++.+++. ++.++.|+.|.+ ..+++.
T Consensus 15 ~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (131)
T cd03009 15 SLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRT 94 (131)
T ss_pred HhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHH
Confidence 3458999999999999999999999998877653 577777777644 357789
Q ss_pred CCCCcccEEEEEeCCCceE
Q 029208 161 LNVKVLPYFHFYRGAHGQL 179 (197)
Q Consensus 161 ~~v~~~Pt~~~~~~g~~~~ 179 (197)
|+|.++||+++++++++.+
T Consensus 95 ~~v~~~P~~~lid~~G~i~ 113 (131)
T cd03009 95 FKIEGIPTLIILDADGEVV 113 (131)
T ss_pred cCCCCCCEEEEECCCCCEE
Confidence 9999999999998666444
No 84
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.46 E-value=7e-13 Score=92.67 Aligned_cols=65 Identities=22% Similarity=0.540 Sum_probs=55.7
Q ss_pred CCeEEEEEEcCCChhHHhhHHHHHHHHHhCC---CeEEEEEECCCC-------------------------HHHHHHCCC
Q 029208 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEHP---EIVFLKVNFDEN-------------------------KPMCKSLNV 163 (197)
Q Consensus 112 ~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~---~v~~~~Vd~d~~-------------------------~~l~~~~~v 163 (197)
||+++|+||++||++|++..|.+.++.++++ ++.++.|+.|++ ..+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5899999999999999999999999999998 599999988754 337889999
Q ss_pred CcccEEEEEeCCC
Q 029208 164 KVLPYFHFYRGAH 176 (197)
Q Consensus 164 ~~~Pt~~~~~~g~ 176 (197)
.++|+++++++++
T Consensus 81 ~~iP~~~lld~~G 93 (95)
T PF13905_consen 81 NGIPTLVLLDPDG 93 (95)
T ss_dssp TSSSEEEEEETTS
T ss_pred CcCCEEEEECCCC
Confidence 9999999998876
No 85
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.45 E-value=6.2e-13 Score=98.87 Aligned_cols=72 Identities=24% Similarity=0.398 Sum_probs=57.8
Q ss_pred HhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC----CeEEEEEECCCCH-------------------------HHH
Q 029208 108 SQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP----EIVFLKVNFDENK-------------------------PMC 158 (197)
Q Consensus 108 ~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~d~~~-------------------------~l~ 158 (197)
.+.+++.++|+||++||++|+.+.|.+.++.+++. ++.++.|+++.+. .+.
T Consensus 13 ~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 92 (132)
T cd02964 13 SALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLE 92 (132)
T ss_pred HHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHH
Confidence 34468999999999999999999999999887654 4777777776532 456
Q ss_pred HHCCCCcccEEEEEeCCCceE
Q 029208 159 KSLNVKVLPYFHFYRGAHGQL 179 (197)
Q Consensus 159 ~~~~v~~~Pt~~~~~~g~~~~ 179 (197)
+.|+|.++||+++++++++.+
T Consensus 93 ~~~~v~~iPt~~lid~~G~iv 113 (132)
T cd02964 93 KQFKVEGIPTLVVLKPDGDVV 113 (132)
T ss_pred HHcCCCCCCEEEEECCCCCEE
Confidence 779999999999998665443
No 86
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.44 E-value=1.6e-12 Score=100.40 Aligned_cols=87 Identities=20% Similarity=0.400 Sum_probs=75.4
Q ss_pred cCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC--eEEEEEECCC----------------------CHHHHHHCCCCc
Q 029208 110 AGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE--IVFLKVNFDE----------------------NKPMCKSLNVKV 165 (197)
Q Consensus 110 ~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~d~----------------------~~~l~~~~~v~~ 165 (197)
..+++++|+||++||++|+...+.+.++.+++++ +.++.|+++. +..+.+.|++.+
T Consensus 59 ~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 138 (173)
T PRK03147 59 LKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGP 138 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCC
Confidence 3578999999999999999999999999999864 8888888753 356789999999
Q ss_pred ccEEEEEeCCCceEEEeecCccHHHHHhhhc
Q 029208 166 LPYFHFYRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 166 ~Pt~~~~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
+|++++++++++.+..+.|..+.+++.++++
T Consensus 139 ~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~ 169 (173)
T PRK03147 139 LPTTFLIDKDGKVVKVITGEMTEEQLEEYLE 169 (173)
T ss_pred cCeEEEECCCCcEEEEEeCCCCHHHHHHHHH
Confidence 9999999877777788899999988887764
No 87
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.44 E-value=5.6e-13 Score=87.48 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=52.8
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEEE
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHF 171 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~ 171 (197)
++.||++||++|+.+.+.++++++.++++.+..+|++++++++++|++.++||+++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 67899999999999999999999888889999999999999999999999999865
No 88
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.42 E-value=1.8e-12 Score=91.85 Aligned_cols=74 Identities=26% Similarity=0.486 Sum_probs=65.9
Q ss_pred CCCeEEEEEEcCCChhHHhhHHHHHHHHHhC--CCeEEEEEECCCC-----------------------HHHHHHCCCCc
Q 029208 111 GDRLVIVEFYGTWCASCRALFPKLCRTAEEH--PEIVFLKVNFDEN-----------------------KPMCKSLNVKV 165 (197)
Q Consensus 111 ~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~--~~v~~~~Vd~d~~-----------------------~~l~~~~~v~~ 165 (197)
.+++++|+||++||++|+...+.+.++.+++ +++.++.|+++.+ ..+.+.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 4789999999999999999999999999998 5699999999886 77899999999
Q ss_pred ccEEEEEeCCCceEEEeec
Q 029208 166 LPYFHFYRGAHGQLESFSC 184 (197)
Q Consensus 166 ~Pt~~~~~~g~~~~~~~~g 184 (197)
+|++++++++++.+..+.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 9999999877767777654
No 89
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.41 E-value=3.7e-12 Score=88.78 Aligned_cols=82 Identities=10% Similarity=0.096 Sum_probs=67.3
Q ss_pred HHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCceEEEeec
Q 029208 105 EALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSC 184 (197)
Q Consensus 105 ~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g 184 (197)
+.+.+..+..-+..|+++||++|....+.++++++.++++.+..+|.++.++++++|+|.++||+++ +|+ . .+.|
T Consensus 5 ~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~-~--~~~G 79 (89)
T cd03026 5 EQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGE-L--FGFG 79 (89)
T ss_pred HHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCE-E--EEeC
Confidence 3444545667788899999999999999999999999999999999999999999999999999964 554 2 2346
Q ss_pred CccHHHH
Q 029208 185 SLAKVML 191 (197)
Q Consensus 185 ~~~~~~l 191 (197)
..+.+++
T Consensus 80 ~~~~~e~ 86 (89)
T cd03026 80 RMTLEEI 86 (89)
T ss_pred CCCHHHH
Confidence 6555554
No 90
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.40 E-value=2.6e-12 Score=93.74 Aligned_cols=81 Identities=22% Similarity=0.368 Sum_probs=66.4
Q ss_pred CCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEE---------------------CCCCHHHHHHCCCCcccEE
Q 029208 111 GDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVN---------------------FDENKPMCKSLNVKVLPYF 169 (197)
Q Consensus 111 ~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd---------------------~d~~~~l~~~~~v~~~Pt~ 169 (197)
.+++++|+||++||++|+.+.|.+.++++++. +..+.+| .|.+..++++|+|.++||+
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~ 97 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAI 97 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEE
Confidence 46899999999999999999999999988753 2222222 1345679999999999999
Q ss_pred EEEeCCCceEEEeecCccHHHHHh
Q 029208 170 HFYRGAHGQLESFSCSLAKVMLRI 193 (197)
Q Consensus 170 ~~~~~g~~~~~~~~g~~~~~~l~~ 193 (197)
+++++++ ....+.|..+++.+.+
T Consensus 98 ~vid~~g-i~~~~~g~~~~~~~~~ 120 (123)
T cd03011 98 VIVDPGG-IVFVTTGVTSEWGLRL 120 (123)
T ss_pred EEEcCCC-eEEEEeccCCHHHHHh
Confidence 9999887 8889999999988865
No 91
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.38 E-value=2.9e-12 Score=123.64 Aligned_cols=87 Identities=18% Similarity=0.309 Sum_probs=73.3
Q ss_pred cCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC--eEEEEEEC---------------------------CCCHHHHHH
Q 029208 110 AGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE--IVFLKVNF---------------------------DENKPMCKS 160 (197)
Q Consensus 110 ~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~---------------------------d~~~~l~~~ 160 (197)
.++|++||+|||+||++|+.+.|.++++.++|++ +.++.|.. |.+..+.++
T Consensus 418 lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~ 497 (1057)
T PLN02919 418 LKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE 497 (1057)
T ss_pred cCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence 3589999999999999999999999999999975 77777742 223457789
Q ss_pred CCCCcccEEEEEeCCCceEEEeecCccHHHHHhhhc
Q 029208 161 LNVKVLPYFHFYRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 161 ~~v~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
|+|.++||++++++.++.+.++.|....+++.++|+
T Consensus 498 ~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~ 533 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVE 533 (1057)
T ss_pred cCCCccceEEEECCCCeEEEEEecccCHHHHHHHHH
Confidence 999999999999766668889999999888887764
No 92
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.33 E-value=1.5e-11 Score=90.67 Aligned_cols=76 Identities=12% Similarity=0.251 Sum_probs=62.3
Q ss_pred cCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC--eEEEEEECC---------------------------CCHHHHHH
Q 029208 110 AGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE--IVFLKVNFD---------------------------ENKPMCKS 160 (197)
Q Consensus 110 ~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~d---------------------------~~~~l~~~ 160 (197)
.++++++|+||++||++|+...|.+.++.+++++ +.++.|+.+ ....+.+.
T Consensus 21 ~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~ 100 (126)
T cd03012 21 LRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRA 100 (126)
T ss_pred hCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHH
Confidence 3579999999999999999999999999999874 788877542 12346778
Q ss_pred CCCCcccEEEEEeCCCceEEEeecC
Q 029208 161 LNVKVLPYFHFYRGAHGQLESFSCS 185 (197)
Q Consensus 161 ~~v~~~Pt~~~~~~g~~~~~~~~g~ 185 (197)
|++.++|+++++++.+..+..+.|.
T Consensus 101 ~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 101 YGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred hCCCcCCeEEEECCCCcEEEEEecC
Confidence 9999999999998766677777664
No 93
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=5.8e-13 Score=117.74 Aligned_cols=81 Identities=25% Similarity=0.527 Sum_probs=71.1
Q ss_pred eEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC----eEEEEEECC--CCHHHHHHCCCCccc
Q 029208 94 MIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE----IVFLKVNFD--ENKPMCKSLNVKVLP 167 (197)
Q Consensus 94 ~~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~----v~~~~Vd~d--~~~~l~~~~~v~~~P 167 (197)
-+...+.++|...+.+. .+-.+|+||++|||+|+.++|.++++++...+ +.++.|||. +|..+|++|+|.++|
T Consensus 40 ~ii~Ld~~tf~~~v~~~-~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~P 118 (606)
T KOG1731|consen 40 PIIELDVDTFNAAVFGS-RKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYP 118 (606)
T ss_pred CeEEeehhhhHHHhccc-chhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCc
Confidence 35566788999999873 47889999999999999999999999997654 789999995 678999999999999
Q ss_pred EEEEEeCC
Q 029208 168 YFHFYRGA 175 (197)
Q Consensus 168 t~~~~~~g 175 (197)
|+.+|..+
T Consensus 119 tlryf~~~ 126 (606)
T KOG1731|consen 119 TLRYFPPD 126 (606)
T ss_pred eeeecCCc
Confidence 99999876
No 94
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.30 E-value=3.5e-11 Score=87.27 Aligned_cols=85 Identities=15% Similarity=0.158 Sum_probs=69.3
Q ss_pred CCCeEEEEEEcCCChhHHhhHHHHH---HHHHhCC-CeEEEEEECC--CCHHHHHHCCCCcccEEEEEeC-CCceEEEee
Q 029208 111 GDRLVIVEFYGTWCASCRALFPKLC---RTAEEHP-EIVFLKVNFD--ENKPMCKSLNVKVLPYFHFYRG-AHGQLESFS 183 (197)
Q Consensus 111 ~~k~vlv~F~a~wC~~Ck~~~p~l~---~la~~~~-~v~~~~Vd~d--~~~~l~~~~~v~~~Pt~~~~~~-g~~~~~~~~ 183 (197)
++|+++|+|+++||.+|+.+...+- ++.+.+. ++.++++|.+ +...++..|++.++|+++++++ ++..+..+.
T Consensus 16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~ 95 (114)
T cd02958 16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWS 95 (114)
T ss_pred hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEc
Confidence 4899999999999999999986432 4444443 5888888887 4567899999999999999988 677899999
Q ss_pred cCccHHHHHhhh
Q 029208 184 CSLAKVMLRILI 195 (197)
Q Consensus 184 g~~~~~~l~~fI 195 (197)
|..+++++...+
T Consensus 96 G~~~~~~f~~~L 107 (114)
T cd02958 96 GNITPEDLLSQL 107 (114)
T ss_pred CCCCHHHHHHHH
Confidence 999998776554
No 95
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.30 E-value=3.4e-11 Score=94.07 Aligned_cols=79 Identities=13% Similarity=0.121 Sum_probs=63.4
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCC-------------HHHHHHCCC--CcccEEEEEeCCCceE-
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN-------------KPMCKSLNV--KVLPYFHFYRGAHGQL- 179 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~-------------~~l~~~~~v--~~~Pt~~~~~~g~~~~- 179 (197)
+|+||++||++|+++.|.+.++++++ ++.++.|+.|+. ..+.+.|++ .++||.++++..+...
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 77799999999999999999999998 467776766532 236678885 6999999998777554
Q ss_pred EEeecCccHHHHHhhh
Q 029208 180 ESFSCSLAKVMLRILI 195 (197)
Q Consensus 180 ~~~~g~~~~~~l~~fI 195 (197)
..+.|..+.+++++.|
T Consensus 152 ~~~~G~~~~~~L~~~I 167 (181)
T PRK13728 152 PLLQGATDAAGFMARM 167 (181)
T ss_pred EEEECCCCHHHHHHHH
Confidence 5788999988776654
No 96
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1e-11 Score=108.06 Aligned_cols=101 Identities=19% Similarity=0.367 Sum_probs=86.7
Q ss_pred EEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC---CeEEEEEECCCCHHHHHHCCCCcccEEEE
Q 029208 95 IDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP---EIVFLKVNFDENKPMCKSLNVKVLPYFHF 171 (197)
Q Consensus 95 ~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~---~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~ 171 (197)
+...+..+|...+.+ .+..++|.||+|||++|+.+.|.++++++.+. ++.+..+|++.+..++.+++|.++||+.+
T Consensus 146 v~~l~~~~~~~~~~~-~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 224 (383)
T KOG0191|consen 146 VFELTKDNFDETVKD-SDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKL 224 (383)
T ss_pred eEEccccchhhhhhc-cCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEE
Confidence 444556677776665 47899999999999999999999999999874 39999999999999999999999999999
Q ss_pred EeCCCceEEEeecCccHHHHHhhhc
Q 029208 172 YRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 172 ~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
|.++......+.|..+.+.+.+|++
T Consensus 225 f~~~~~~~~~~~~~R~~~~i~~~v~ 249 (383)
T KOG0191|consen 225 FPPGEEDIYYYSGLRDSDSIVSFVE 249 (383)
T ss_pred ecCCCcccccccccccHHHHHHHHH
Confidence 9888743778889999999988874
No 97
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.28 E-value=5.5e-11 Score=88.30 Aligned_cols=93 Identities=11% Similarity=0.048 Sum_probs=78.8
Q ss_pred HHHHHHHHhcCCCeEEEEEEcC--CChhHHhhHHHHHHHHHhCC-C-eEEEEEECCCCHHHHHHCCCCcccEEEEEeCCC
Q 029208 101 QEFLEALSQAGDRLVIVEFYGT--WCASCRALFPKLCRTAEEHP-E-IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAH 176 (197)
Q Consensus 101 ~~~~~~l~~~~~k~vlv~F~a~--wC~~Ck~~~p~l~~la~~~~-~-v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~ 176 (197)
.++++.+.. ++..++.|-.+ -++.+-...=.+.+++++|+ + +++++||+|++++++.+|||.++||++||++|+
T Consensus 25 ~~~~~~~~~--~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk 102 (132)
T PRK11509 25 SRLDDWLTQ--APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGN 102 (132)
T ss_pred ccHHHHHhC--CCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCE
Confidence 556666654 44566666554 56888888899999999998 3 999999999999999999999999999999987
Q ss_pred ceEEEeecCccHHHHHhhhc
Q 029208 177 GQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 177 ~~~~~~~g~~~~~~l~~fI~ 196 (197)
.+..+.|..+++++.++|+
T Consensus 103 -~v~~i~G~~~k~~l~~~I~ 121 (132)
T PRK11509 103 -YRGVLNGIHPWAELINLMR 121 (132)
T ss_pred -EEEEEeCcCCHHHHHHHHH
Confidence 8899999999999988874
No 98
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.25 E-value=5e-11 Score=85.79 Aligned_cols=65 Identities=20% Similarity=0.322 Sum_probs=50.5
Q ss_pred CCeEEEEEEcCCChhHHhhHHHHHHHHHhCC-CeEEEEEECC---C-----------------CHHHHHHCCCCcccEEE
Q 029208 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEHP-EIVFLKVNFD---E-----------------NKPMCKSLNVKVLPYFH 170 (197)
Q Consensus 112 ~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d---~-----------------~~~l~~~~~v~~~Pt~~ 170 (197)
+++++|+||++||++|+.+.|.++++.+++. ++.++.+.-+ + +.++.+.|++.++|+++
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~~ 100 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYAV 100 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeEE
Confidence 7899999999999999999999999988875 4665555211 1 13466778888889998
Q ss_pred EEeCCC
Q 029208 171 FYRGAH 176 (197)
Q Consensus 171 ~~~~g~ 176 (197)
++++.+
T Consensus 101 vid~~G 106 (114)
T cd02967 101 LLDEAG 106 (114)
T ss_pred EECCCC
Confidence 887655
No 99
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.24 E-value=3.4e-11 Score=89.34 Aligned_cols=86 Identities=10% Similarity=0.148 Sum_probs=58.6
Q ss_pred HHHHHHH--hcCCCeEEEEEEcCCChhHHhhHHHHH---HHHHhC-CCeEEEEEECCCCHHHHHHCCCCcccEEEEEeCC
Q 029208 102 EFLEALS--QAGDRLVIVEFYGTWCASCRALFPKLC---RTAEEH-PEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGA 175 (197)
Q Consensus 102 ~~~~~l~--~~~~k~vlv~F~a~wC~~Ck~~~p~l~---~la~~~-~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g 175 (197)
++++.++ ...+|+++|+|+++||++|+++...+. ++.+.. +++..+.++.+....-....+ .++||++|++++
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~ 89 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPS 89 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCC
Confidence 4555443 235899999999999999999998754 333333 256666777653211111233 689999999988
Q ss_pred CceEEEeecCccH
Q 029208 176 HGQLESFSCSLAK 188 (197)
Q Consensus 176 ~~~~~~~~g~~~~ 188 (197)
++++..+.|...+
T Consensus 90 g~vi~~i~Gy~~~ 102 (130)
T cd02960 90 LTVRADITGRYSN 102 (130)
T ss_pred CCCcccccccccC
Confidence 8788888877544
No 100
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.23 E-value=1.1e-10 Score=87.67 Aligned_cols=79 Identities=20% Similarity=0.376 Sum_probs=66.2
Q ss_pred hcCCCeEEEEEEcC-CChhHHhhHHHHHHHHHhCC--CeEEEEEECCCC---------------------HHHHHHCCCC
Q 029208 109 QAGDRLVIVEFYGT-WCASCRALFPKLCRTAEEHP--EIVFLKVNFDEN---------------------KPMCKSLNVK 164 (197)
Q Consensus 109 ~~~~k~vlv~F~a~-wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~---------------------~~l~~~~~v~ 164 (197)
+.++++++|+||++ ||++|+...|.+.++.++++ ++.++.|..+.+ ..+.+.|++.
T Consensus 25 ~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 104 (146)
T PF08534_consen 25 DFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVT 104 (146)
T ss_dssp GGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCE
T ss_pred HhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCc
Confidence 34689999999999 99999999999999988754 488877776543 4588899988
Q ss_pred ---------cccEEEEEeCCCceEEEeecCcc
Q 029208 165 ---------VLPYFHFYRGAHGQLESFSCSLA 187 (197)
Q Consensus 165 ---------~~Pt~~~~~~g~~~~~~~~g~~~ 187 (197)
++|++++++.+++.+....|..+
T Consensus 105 ~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 105 IMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp EECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred cccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 99999999988878888877766
No 101
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.21 E-value=6.6e-11 Score=80.92 Aligned_cols=63 Identities=25% Similarity=0.557 Sum_probs=48.5
Q ss_pred CCCeEEEEEEcCCChhHHhhHHHHH---HHHHh-CCCeEEEEEECCCCHHHHHHCCCCcccEEEEEeC
Q 029208 111 GDRLVIVEFYGTWCASCRALFPKLC---RTAEE-HPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRG 174 (197)
Q Consensus 111 ~~k~vlv~F~a~wC~~Ck~~~p~l~---~la~~-~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~ 174 (197)
.+|+++|+|+++||++|+.+...+. ++.+. .+++.++++|.++.....+..+ .++|+++|+++
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ldp 82 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLDP 82 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEET
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeCC
Confidence 3899999999999999999998773 44442 3569999999987655332222 77999999974
No 102
>smart00594 UAS UAS domain.
Probab=99.19 E-value=3.6e-10 Score=83.10 Aligned_cols=86 Identities=9% Similarity=0.154 Sum_probs=67.8
Q ss_pred CCCeEEEEEEcCCChhHHhhHHHHH---HHHHhCC-CeEEEEEECCC--CHHHHHHCCCCcccEEEEEeCCC-----ceE
Q 029208 111 GDRLVIVEFYGTWCASCRALFPKLC---RTAEEHP-EIVFLKVNFDE--NKPMCKSLNVKVLPYFHFYRGAH-----GQL 179 (197)
Q Consensus 111 ~~k~vlv~F~a~wC~~Ck~~~p~l~---~la~~~~-~v~~~~Vd~d~--~~~l~~~~~v~~~Pt~~~~~~g~-----~~~ 179 (197)
.+|+++|+|+++||++|+.+...+- ++.+... ++.+..+|++. ...++++|++.++|+++++.+.+ ..+
T Consensus 26 ~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~ 105 (122)
T smart00594 26 QRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWV 105 (122)
T ss_pred hcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEe
Confidence 3789999999999999999986533 3333333 58888888764 45689999999999999997654 246
Q ss_pred EEeecCccHHHHHhhhc
Q 029208 180 ESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 180 ~~~~g~~~~~~l~~fI~ 196 (197)
..+.|..+.+++.++++
T Consensus 106 ~~~~G~~~~~~l~~~l~ 122 (122)
T smart00594 106 GVVEGEISPEELMTFLE 122 (122)
T ss_pred ccccCCCCHHHHHHhhC
Confidence 78889999999988764
No 103
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.14 E-value=2.7e-10 Score=89.43 Aligned_cols=85 Identities=6% Similarity=-0.036 Sum_probs=66.6
Q ss_pred hcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEE------EEEECCC-----------------------------
Q 029208 109 QAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVF------LKVNFDE----------------------------- 153 (197)
Q Consensus 109 ~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~------~~Vd~d~----------------------------- 153 (197)
+..+|..+|+|||.||++|+...|.+.+++++ ++.+ +.||.|+
T Consensus 56 ~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~ 133 (184)
T TIGR01626 56 ELAGKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD 133 (184)
T ss_pred HcCCCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence 44589999999999999999999999999764 2233 4555543
Q ss_pred CHHHHHHCCCCcccEE-EEEeCCCceEEEeecCccHHHHHhhh
Q 029208 154 NKPMCKSLNVKVLPYF-HFYRGAHGQLESFSCSLAKVMLRILI 195 (197)
Q Consensus 154 ~~~l~~~~~v~~~Pt~-~~~~~g~~~~~~~~g~~~~~~l~~fI 195 (197)
+..+...|++.++|+. ++++..+..+....|..+.++++.++
T Consensus 134 ~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 134 KGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred cchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 2235678999999888 78887777888999999888876654
No 104
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.14 E-value=2.9e-10 Score=90.55 Aligned_cols=88 Identities=11% Similarity=0.131 Sum_probs=64.9
Q ss_pred HhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC--CeEEEEEECCC-------C----HHHHHHCCC-----------
Q 029208 108 SQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE-------N----KPMCKSLNV----------- 163 (197)
Q Consensus 108 ~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-------~----~~l~~~~~v----------- 163 (197)
.+.+++++||+|||+||++|+...|.+.++.+++. ++.++.|++++ + ...++++++
T Consensus 35 ~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~ 114 (199)
T PTZ00056 35 SSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVN 114 (199)
T ss_pred HHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeecc
Confidence 33468999999999999999999999999999986 48999998631 1 223344432
Q ss_pred -------------------------Cccc---EEEEEeCCCceEEEeecCccHHHHHhhh
Q 029208 164 -------------------------KVLP---YFHFYRGAHGQLESFSCSLAKVMLRILI 195 (197)
Q Consensus 164 -------------------------~~~P---t~~~~~~g~~~~~~~~g~~~~~~l~~fI 195 (197)
.++| +.++++..+..+..+.|..+.+++...|
T Consensus 115 g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I 174 (199)
T PTZ00056 115 GENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKI 174 (199)
T ss_pred CCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHH
Confidence 1122 6778877776888888888777766554
No 105
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.14 E-value=4.8e-10 Score=88.51 Aligned_cols=84 Identities=15% Similarity=0.260 Sum_probs=59.9
Q ss_pred CCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECC--------------------CCHHHHHHCCCCcccEEE
Q 029208 111 GDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFD--------------------ENKPMCKSLNVKVLPYFH 170 (197)
Q Consensus 111 ~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d--------------------~~~~l~~~~~v~~~Pt~~ 170 (197)
++++++|+||++||++|+++.|.+.++.+++. +.++.|..+ ...++.+.|++.++|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~-~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE-TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 57899999999999999999999999987653 333333321 134677899999999999
Q ss_pred EEeCCCceEEEeecCccHHHHHhhhc
Q 029208 171 FYRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 171 ~~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
++++++ .+.........+.++++++
T Consensus 152 lID~~G-~I~~~g~~~~~~~le~ll~ 176 (189)
T TIGR02661 152 LLDQDG-KIRAKGLTNTREHLESLLE 176 (189)
T ss_pred EECCCC-eEEEccCCCCHHHHHHHHH
Confidence 997666 3333222345566666553
No 106
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.13 E-value=4e-10 Score=91.81 Aligned_cols=89 Identities=11% Similarity=0.127 Sum_probs=68.3
Q ss_pred HhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC--CeEEEEEECCC-------C----HHHH-HHCC-----------
Q 029208 108 SQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE-------N----KPMC-KSLN----------- 162 (197)
Q Consensus 108 ~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-------~----~~l~-~~~~----------- 162 (197)
.+.+++++||+||++||++|+...|.+.++.++++ ++.++.|+++. . ...+ ++++
T Consensus 95 sd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~ 174 (236)
T PLN02399 95 SKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDV 174 (236)
T ss_pred HHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCC
Confidence 34458999999999999999999999999999986 48999988741 1 1121 2221
Q ss_pred -----------------------CCcccEEEEEeCCCceEEEeecCccHHHHHhhhc
Q 029208 163 -----------------------VKVLPYFHFYRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 163 -----------------------v~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
+...||.++++..++.+.++.|..+.++++..|+
T Consensus 175 ~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~ 231 (236)
T PLN02399 175 NGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQ 231 (236)
T ss_pred CcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHH
Confidence 1225899999888888999999998888777663
No 107
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.11 E-value=4.7e-10 Score=85.35 Aligned_cols=88 Identities=15% Similarity=0.197 Sum_probs=65.8
Q ss_pred HHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC--CeEEEEEECCC-------C----HHHHHH-CC----------
Q 029208 107 LSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE-------N----KPMCKS-LN---------- 162 (197)
Q Consensus 107 l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-------~----~~l~~~-~~---------- 162 (197)
+.+.++++++|+||++||+ |+...|.+.++.+++. ++.++.|+++. . ...+++ ++
T Consensus 17 l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d 95 (152)
T cd00340 17 LSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKID 95 (152)
T ss_pred HHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEe
Confidence 3344589999999999999 9999999999999986 48888887642 1 122322 22
Q ss_pred -------------CCccc-----------EEEEEeCCCceEEEeecCccHHHHHhhh
Q 029208 163 -------------VKVLP-----------YFHFYRGAHGQLESFSCSLAKVMLRILI 195 (197)
Q Consensus 163 -------------v~~~P-----------t~~~~~~g~~~~~~~~g~~~~~~l~~fI 195 (197)
+.++| |.+++++.++.+..+.|..+.+++...|
T Consensus 96 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~i 152 (152)
T cd00340 96 VNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKDI 152 (152)
T ss_pred ccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhcC
Confidence 23466 6888877777889999999888876643
No 108
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.11 E-value=4.3e-10 Score=87.56 Aligned_cols=97 Identities=24% Similarity=0.445 Sum_probs=87.9
Q ss_pred hhhhcCCCCeEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCC
Q 029208 85 KWWEKNAPNMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVK 164 (197)
Q Consensus 85 ~~~~~~~~~~~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~ 164 (197)
.|.......+.+|.++.+|.+.... ...||++||-+.-..|+.|...++.+++.+.+.+|++||+...+-++.+++|+
T Consensus 59 ~~~~~GhG~y~ev~~Ekdf~~~~~k--S~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~Ik 136 (211)
T KOG1672|consen 59 EWLSKGHGEYEEVASEKDFFEEVKK--SEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIK 136 (211)
T ss_pred HHHHcCCceEEEeccHHHHHHHhhc--CceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeee
Confidence 3666778899999999999998866 57899999999999999999999999999999999999999999999999999
Q ss_pred cccEEEEEeCCCceEEEeec
Q 029208 165 VLPYFHFYRGAHGQLESFSC 184 (197)
Q Consensus 165 ~~Pt~~~~~~g~~~~~~~~g 184 (197)
.+||+.+|++|. ....+.|
T Consensus 137 VLP~v~l~k~g~-~~D~iVG 155 (211)
T KOG1672|consen 137 VLPTVALFKNGK-TVDYVVG 155 (211)
T ss_pred EeeeEEEEEcCE-EEEEEee
Confidence 999999999987 5555554
No 109
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.07 E-value=7.6e-10 Score=77.55 Aligned_cols=72 Identities=28% Similarity=0.595 Sum_probs=64.4
Q ss_pred CCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC-eEEEEEECC-CCHHHHHHCC--CCcccEEEEEeCCCceEEEeec
Q 029208 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFD-ENKPMCKSLN--VKVLPYFHFYRGAHGQLESFSC 184 (197)
Q Consensus 112 ~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d-~~~~l~~~~~--v~~~Pt~~~~~~g~~~~~~~~g 184 (197)
+++++++||++||++|+.+.|.+.++++++.+ +.++.+|.. .++.+...|+ +..+|++.++.++.. .....+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~ 107 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE-VDRLVG 107 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch-hhhhhh
Confidence 68999999999999999999999999999985 999999997 7899999999 999999999988875 555554
No 110
>PLN02412 probable glutathione peroxidase
Probab=99.06 E-value=1.2e-09 Score=84.63 Aligned_cols=89 Identities=10% Similarity=0.147 Sum_probs=68.2
Q ss_pred HhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC--CeEEEEEECCC-------C-HHH----HHHCC-----------
Q 029208 108 SQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE-------N-KPM----CKSLN----------- 162 (197)
Q Consensus 108 ~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-------~-~~l----~~~~~----------- 162 (197)
.+.+++++||+||++||++|+...|.+.++.++|. ++.++.|+++. . .++ +++++
T Consensus 25 ~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~ 104 (167)
T PLN02412 25 NQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDV 104 (167)
T ss_pred HHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEee
Confidence 34457999999999999999999999999999987 48899888642 1 111 12211
Q ss_pred -----------------------CCcccEEEEEeCCCceEEEeecCccHHHHHhhhc
Q 029208 163 -----------------------VKVLPYFHFYRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 163 -----------------------v~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
+...|+.++++.+++.+..+.|..+.+++...|+
T Consensus 105 ~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~ 161 (167)
T PLN02412 105 NGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQ 161 (167)
T ss_pred CCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHH
Confidence 3345899999888878899999999888877663
No 111
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=99.01 E-value=2.3e-09 Score=79.67 Aligned_cols=85 Identities=26% Similarity=0.425 Sum_probs=59.0
Q ss_pred HHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHC---CCCcccEEEEEeCCCc
Q 029208 101 QEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSL---NVKVLPYFHFYRGAHG 177 (197)
Q Consensus 101 ~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~---~v~~~Pt~~~~~~g~~ 177 (197)
++..+.++....+.-++.|..+|||.|+...|.+.++++..+++.+-.+..|++.++.++| +...+||++|++++++
T Consensus 30 ~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~ 109 (129)
T PF14595_consen 30 EEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGK 109 (129)
T ss_dssp HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--
T ss_pred HHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCC
Confidence 3445566665567788889999999999999999999999998887777888888877665 5789999999987776
Q ss_pred eEEEeecC
Q 029208 178 QLESFSCS 185 (197)
Q Consensus 178 ~~~~~~g~ 185 (197)
++.++...
T Consensus 110 ~lg~wger 117 (129)
T PF14595_consen 110 ELGRWGER 117 (129)
T ss_dssp EEEEEESS
T ss_pred EeEEEcCC
Confidence 88888643
No 112
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.01 E-value=2.4e-09 Score=81.46 Aligned_cols=89 Identities=12% Similarity=0.082 Sum_probs=66.7
Q ss_pred HHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC--CeEEEEEECC--------CC---HHHHHH-CCC---------
Q 029208 107 LSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFD--------EN---KPMCKS-LNV--------- 163 (197)
Q Consensus 107 l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d--------~~---~~l~~~-~~v--------- 163 (197)
+.+.++|+++|.||++||++|+...|.+.++.+++. ++.++.|++. .. ...+++ +++
T Consensus 17 l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~ 96 (153)
T TIGR02540 17 LEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIK 96 (153)
T ss_pred HHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEe
Confidence 344568999999999999999999999999999986 4899998852 11 112221 211
Q ss_pred -----------------CcccE----EEEEeCCCceEEEeecCccHHHHHhhh
Q 029208 164 -----------------KVLPY----FHFYRGAHGQLESFSCSLAKVMLRILI 195 (197)
Q Consensus 164 -----------------~~~Pt----~~~~~~g~~~~~~~~g~~~~~~l~~fI 195 (197)
.++|+ .++++++++.+..+.|..+.+++...|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i 149 (153)
T TIGR02540 97 ILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEI 149 (153)
T ss_pred cCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHH
Confidence 14787 788877777889999999888877655
No 113
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.99 E-value=5.6e-09 Score=80.78 Aligned_cols=70 Identities=17% Similarity=0.326 Sum_probs=58.6
Q ss_pred CCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC--CeEEEEEECCC-----------------------------CHHHHH
Q 029208 111 GDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE-----------------------------NKPMCK 159 (197)
Q Consensus 111 ~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-----------------------------~~~l~~ 159 (197)
+++++||+||++||+.|....+.+.++.++++ ++.++.|..|. +..+.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 47899999999999999999999999999987 58888888753 123677
Q ss_pred HCCCCcccEEEEEeCCCceEE
Q 029208 160 SLNVKVLPYFHFYRGAHGQLE 180 (197)
Q Consensus 160 ~~~v~~~Pt~~~~~~g~~~~~ 180 (197)
.|++..+|++++++++++.+.
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~ 124 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVY 124 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEE
Confidence 899999999999987664543
No 114
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.98 E-value=2.1e-09 Score=89.01 Aligned_cols=92 Identities=23% Similarity=0.381 Sum_probs=73.0
Q ss_pred CCeEEeCChHHHHHHHHhc-CCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEE
Q 029208 92 PNMIDIHSTQEFLEALSQA-GDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFH 170 (197)
Q Consensus 92 ~~~~~i~~~~~~~~~l~~~-~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~ 170 (197)
..+.+|.+.++|.+.+... ++..|||+||-+.++.|+.+...|..+|++|+.++|++|..+..+ +..+|.+.++||++
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~~LPtll 203 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDKNLPTLL 203 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TTC-SEEE
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcccCCCEEE
Confidence 4678888899999988643 356899999999999999999999999999999999999987664 77899999999999
Q ss_pred EEeCCCceEEEeecC
Q 029208 171 FYRGAHGQLESFSCS 185 (197)
Q Consensus 171 ~~~~g~~~~~~~~g~ 185 (197)
+|++|. .+..+.|.
T Consensus 204 vYk~G~-l~~~~V~l 217 (265)
T PF02114_consen 204 VYKNGD-LIGNFVGL 217 (265)
T ss_dssp EEETTE-EEEEECTG
T ss_pred EEECCE-EEEeEEeh
Confidence 999875 67777654
No 115
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=6.7e-10 Score=87.99 Aligned_cols=90 Identities=14% Similarity=0.308 Sum_probs=77.5
Q ss_pred CeEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC--eEEEEEECCCCHHHHHHCCCC------
Q 029208 93 NMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE--IVFLKVNFDENKPMCKSLNVK------ 164 (197)
Q Consensus 93 ~~~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~d~~~~l~~~~~v~------ 164 (197)
.+....+.+.+++.+...+.+.++|.|||.|.+.|+...|.+.++..+|.. ++|.+||+...++.+++|+|.
T Consensus 125 ~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~sr 204 (265)
T KOG0914|consen 125 TIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSR 204 (265)
T ss_pred heeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccc
Confidence 455566777888888776788999999999999999999999999999874 999999999999999999885
Q ss_pred cccEEEEEeCCCceEEEee
Q 029208 165 VLPYFHFYRGAHGQLESFS 183 (197)
Q Consensus 165 ~~Pt~~~~~~g~~~~~~~~ 183 (197)
..||+++|++|+ ++.+..
T Consensus 205 QLPT~ilFq~gk-E~~RrP 222 (265)
T KOG0914|consen 205 QLPTYILFQKGK-EVSRRP 222 (265)
T ss_pred cCCeEEEEccch-hhhcCc
Confidence 699999999887 554443
No 116
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.95 E-value=7.1e-09 Score=68.13 Aligned_cols=69 Identities=16% Similarity=0.344 Sum_probs=54.1
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHH----HHHHCCCCcccEEEEEeCCCceEEEeecCccHHHH
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKP----MCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKVML 191 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~----l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~~~~~~l 191 (197)
+..|+++||++|+.+.+.+++ .++.+..+|++++++ +.+.+++.++|++++. |+ . +.| .+.+++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~-~---~~g-~~~~~i 69 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HK-I---IVG-FDPEKL 69 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CE-E---Eee-CCHHHH
Confidence 467999999999999988865 368888999987754 4567999999999985 22 2 555 467888
Q ss_pred Hhhhc
Q 029208 192 RILIQ 196 (197)
Q Consensus 192 ~~fI~ 196 (197)
.++|+
T Consensus 70 ~~~i~ 74 (74)
T TIGR02196 70 DQLLE 74 (74)
T ss_pred HHHhC
Confidence 88875
No 117
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.93 E-value=7.6e-09 Score=64.61 Aligned_cols=60 Identities=30% Similarity=0.546 Sum_probs=52.2
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHH---HCCCCcccEEEEEeCC
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCK---SLNVKVLPYFHFYRGA 175 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~---~~~v~~~Pt~~~~~~g 175 (197)
++.||++||++|+.+.+.+.++....+++.+..+|++......+ .+++..+|++++++++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 47899999999999999999995555679999999998876654 8899999999999876
No 118
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.89 E-value=3.7e-08 Score=79.36 Aligned_cols=91 Identities=21% Similarity=0.241 Sum_probs=73.1
Q ss_pred HHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECC-----------CCHHHHHHCCCCcccEEE
Q 029208 102 EFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFD-----------ENKPMCKSLNVKVLPYFH 170 (197)
Q Consensus 102 ~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d-----------~~~~l~~~~~v~~~Pt~~ 170 (197)
+-++.|.+..++.-|++||.+.|+.|+.+.|.+..++++| ++.++.|++| .+.+++++++|..+|+++
T Consensus 110 ~~~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~ 188 (215)
T PF13728_consen 110 KRDKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALF 188 (215)
T ss_pred HHHHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEE
Confidence 3444555555788999999999999999999999999999 6777777776 357899999999999999
Q ss_pred EEeCCCce-EEEeecCccHHHHHh
Q 029208 171 FYRGAHGQ-LESFSCSLAKVMLRI 193 (197)
Q Consensus 171 ~~~~g~~~-~~~~~g~~~~~~l~~ 193 (197)
++..+.+. ..--.|..+.++|.+
T Consensus 189 Lv~~~~~~~~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 189 LVNPNTKKWYPVSQGFMSLDELED 212 (215)
T ss_pred EEECCCCeEEEEeeecCCHHHHHH
Confidence 99876644 444557788777754
No 119
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.89 E-value=1.3e-08 Score=75.69 Aligned_cols=85 Identities=14% Similarity=0.080 Sum_probs=68.5
Q ss_pred CCCeEEEEEE-cCCChhHHhhHHHHHHHHHhCC--CeEEEEEECCC---------------------CHHHHHHCCCCcc
Q 029208 111 GDRLVIVEFY-GTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE---------------------NKPMCKSLNVKVL 166 (197)
Q Consensus 111 ~~k~vlv~F~-a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~---------------------~~~l~~~~~v~~~ 166 (197)
++++++|+|| +.||+.|....+.+.++.+++. ++.++.|..+. +..+.+.|++...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 4789999999 5899999999999999988775 57888776653 2457788999888
Q ss_pred ---------cEEEEEeCCCceEEEeecCccHHHHHhhh
Q 029208 167 ---------PYFHFYRGAHGQLESFSCSLAKVMLRILI 195 (197)
Q Consensus 167 ---------Pt~~~~~~g~~~~~~~~g~~~~~~l~~fI 195 (197)
|++++++++++....+.|..+...+.+-+
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 99999987777888888888776665543
No 120
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.87 E-value=6.6e-09 Score=78.90 Aligned_cols=69 Identities=22% Similarity=0.382 Sum_probs=55.1
Q ss_pred CCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC----CeEEEEEECCCC-------------------------HHHHHHC
Q 029208 111 GDRLVIVEFYGTWCASCRALFPKLCRTAEEHP----EIVFLKVNFDEN-------------------------KPMCKSL 161 (197)
Q Consensus 111 ~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~----~v~~~~Vd~d~~-------------------------~~l~~~~ 161 (197)
.+|.|.++|.|.||++|+.+.|++.++.++.. .+.++-|+.|.+ +++.++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 47999999999999999999999988866543 355666655532 4578899
Q ss_pred CCCcccEEEEEeCCCceE
Q 029208 162 NVKVLPYFHFYRGAHGQL 179 (197)
Q Consensus 162 ~v~~~Pt~~~~~~g~~~~ 179 (197)
+|.++|++++.++.+..+
T Consensus 112 ~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVV 129 (157)
T ss_pred ccCcCceeEEecCCCCEe
Confidence 999999999998877444
No 121
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.84 E-value=2.8e-08 Score=74.39 Aligned_cols=77 Identities=9% Similarity=0.122 Sum_probs=60.6
Q ss_pred hcCCCeEEEEEEcCC-ChhHHhhHHHHHHHHHhCCCeEEEEEECCCC-----------------------HHHHHHCCCC
Q 029208 109 QAGDRLVIVEFYGTW-CASCRALFPKLCRTAEEHPEIVFLKVNFDEN-----------------------KPMCKSLNVK 164 (197)
Q Consensus 109 ~~~~k~vlv~F~a~w-C~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~-----------------------~~l~~~~~v~ 164 (197)
+..++++||+||+.| |++|+...|.+.++.++++++.++.|+.|.. ..+.+.|++.
T Consensus 23 ~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~ 102 (143)
T cd03014 23 DFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVL 102 (143)
T ss_pred HhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCe
Confidence 345789999999999 6999999999999999998888888887521 3456777875
Q ss_pred c------ccEEEEEeCCCceEEEeecC
Q 029208 165 V------LPYFHFYRGAHGQLESFSCS 185 (197)
Q Consensus 165 ~------~Pt~~~~~~g~~~~~~~~g~ 185 (197)
. .|+.+++++.+.......|.
T Consensus 103 ~~~~~~~~~~~~iid~~G~I~~~~~~~ 129 (143)
T cd03014 103 IKDLGLLARAVFVIDENGKVIYVELVP 129 (143)
T ss_pred eccCCccceEEEEEcCCCeEEEEEECC
Confidence 3 68999998666566666544
No 122
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.83 E-value=2.6e-08 Score=72.36 Aligned_cols=70 Identities=19% Similarity=0.438 Sum_probs=59.8
Q ss_pred hcCCCeEEEEEEcC-CChhHHhhHHHHHHHHHhCC--CeEEEEEECCC---------------------CHHHHHHCCCC
Q 029208 109 QAGDRLVIVEFYGT-WCASCRALFPKLCRTAEEHP--EIVFLKVNFDE---------------------NKPMCKSLNVK 164 (197)
Q Consensus 109 ~~~~k~vlv~F~a~-wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~---------------------~~~l~~~~~v~ 164 (197)
+..+++++|.||+. ||++|+...+.+.++.++++ ++.++.|..+. +..+.+.|++.
T Consensus 22 ~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 101 (124)
T PF00578_consen 22 DLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIE 101 (124)
T ss_dssp GGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCE
T ss_pred HHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCc
Confidence 34579999999999 99999999999999998876 69999888764 24578889999
Q ss_pred ------cccEEEEEeCCCce
Q 029208 165 ------VLPYFHFYRGAHGQ 178 (197)
Q Consensus 165 ------~~Pt~~~~~~g~~~ 178 (197)
.+|+++++++++..
T Consensus 102 ~~~~~~~~p~~~lid~~g~I 121 (124)
T PF00578_consen 102 DEKDTLALPAVFLIDPDGKI 121 (124)
T ss_dssp ETTTSEESEEEEEEETTSBE
T ss_pred cccCCceEeEEEEECCCCEE
Confidence 99999999887743
No 123
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.83 E-value=3.9e-08 Score=71.57 Aligned_cols=86 Identities=23% Similarity=0.313 Sum_probs=76.4
Q ss_pred EEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC-eEEEEEECCCCHHHHHHCCCCcccEEEEEe
Q 029208 95 IDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYR 173 (197)
Q Consensus 95 ~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~ 173 (197)
.++++..+.++++.+...+.++|-|.-+|-+.|.+|...+.+++++..+ ..++-||+++-+++-+.|++...||++||-
T Consensus 6 p~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFf 85 (142)
T KOG3414|consen 6 PTLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFF 85 (142)
T ss_pred cccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEE
Confidence 3567788999999887799999999999999999999999999999888 778899999999999999999999999887
Q ss_pred CCCceEE
Q 029208 174 GAHGQLE 180 (197)
Q Consensus 174 ~g~~~~~ 180 (197)
+++....
T Consensus 86 n~kHmki 92 (142)
T KOG3414|consen 86 NNKHMKI 92 (142)
T ss_pred cCceEEE
Confidence 7664433
No 124
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.81 E-value=6.6e-08 Score=74.80 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=60.7
Q ss_pred HhcCCCeEEEEEEcCC-ChhHHhhHHHHHHHHHhCCCeEEEEEECCC-----------------------CHHHHHHCCC
Q 029208 108 SQAGDRLVIVEFYGTW-CASCRALFPKLCRTAEEHPEIVFLKVNFDE-----------------------NKPMCKSLNV 163 (197)
Q Consensus 108 ~~~~~k~vlv~F~a~w-C~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~-----------------------~~~l~~~~~v 163 (197)
.+.++++++|+||+.| |++|....|.+.++.+++.++.++.|..|. ...+++.|++
T Consensus 40 ~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv 119 (167)
T PRK00522 40 ADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGV 119 (167)
T ss_pred HHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCC
Confidence 3345789999999999 999999999999999998788888887653 1257788998
Q ss_pred Cccc---------EEEEEeCCCceEEEee
Q 029208 164 KVLP---------YFHFYRGAHGQLESFS 183 (197)
Q Consensus 164 ~~~P---------t~~~~~~g~~~~~~~~ 183 (197)
...| +.++++..+.......
T Consensus 120 ~~~~~~~~g~~~r~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 120 AIAEGPLKGLLARAVFVLDENNKVVYSEL 148 (167)
T ss_pred eecccccCCceeeEEEEECCCCeEEEEEE
Confidence 8777 8888876665555553
No 125
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.79 E-value=6.6e-08 Score=70.70 Aligned_cols=80 Identities=19% Similarity=0.459 Sum_probs=56.9
Q ss_pred eCChHHHHHHHHh--cCCCeEEEEEEcC-------CChhHHhhHHHHHHHHHhCC-CeEEEEEECCCC-------HHHHH
Q 029208 97 IHSTQEFLEALSQ--AGDRLVIVEFYGT-------WCASCRALFPKLCRTAEEHP-EIVFLKVNFDEN-------KPMCK 159 (197)
Q Consensus 97 i~~~~~~~~~l~~--~~~k~vlv~F~a~-------wC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~-------~~l~~ 159 (197)
+.+.++|.+.+.+ .++++++|.|+++ ||+.|.+..|.+++...+.+ +..++.|.+..- ....+
T Consensus 2 v~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~ 81 (119)
T PF06110_consen 2 VRGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT 81 (119)
T ss_dssp EECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH
T ss_pred ccCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE
Confidence 4567888888875 4578999999965 99999999999999888766 588998887532 23444
Q ss_pred --HCCCCcccEEEEEeCCC
Q 029208 160 --SLNVKVLPYFHFYRGAH 176 (197)
Q Consensus 160 --~~~v~~~Pt~~~~~~g~ 176 (197)
++++.++||++-|..++
T Consensus 82 ~p~~~l~~IPTLi~~~~~~ 100 (119)
T PF06110_consen 82 DPDLKLKGIPTLIRWETGE 100 (119)
T ss_dssp --CC---SSSEEEECTSS-
T ss_pred cceeeeeecceEEEECCCC
Confidence 59999999999997653
No 126
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=4.5e-08 Score=70.66 Aligned_cols=84 Identities=21% Similarity=0.519 Sum_probs=66.3
Q ss_pred eCChHHHHHHHHhc-CCCeEEEEEEc--------CCChhHHhhHHHHHHHHHhCC-CeEEEEEECCC-------CHHHHH
Q 029208 97 IHSTQEFLEALSQA-GDRLVIVEFYG--------TWCASCRALFPKLCRTAEEHP-EIVFLKVNFDE-------NKPMCK 159 (197)
Q Consensus 97 i~~~~~~~~~l~~~-~~k~vlv~F~a--------~wC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~-------~~~l~~ 159 (197)
....++|++.+++. +++.++|.|++ +||+.|.+..|.+.+..++.+ +++|+.|++.+ +....+
T Consensus 9 ~~g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~ 88 (128)
T KOG3425|consen 9 LPGYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRK 88 (128)
T ss_pred cchHHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCcccc
Confidence 45577888888764 46779999997 499999999999999988776 59999999864 345566
Q ss_pred HCCC-CcccEEEEEeCCCceEE
Q 029208 160 SLNV-KVLPYFHFYRGAHGQLE 180 (197)
Q Consensus 160 ~~~v-~~~Pt~~~~~~g~~~~~ 180 (197)
..++ .++||++-|+++.+.+.
T Consensus 89 d~~~lt~vPTLlrw~~~~~rL~ 110 (128)
T KOG3425|consen 89 DPGILTAVPTLLRWKRQPQRLD 110 (128)
T ss_pred CCCceeecceeeEEcCccccch
Confidence 7777 99999999986443433
No 127
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.75 E-value=5.5e-08 Score=76.33 Aligned_cols=88 Identities=14% Similarity=0.155 Sum_probs=61.7
Q ss_pred HhcCCCeE-EEEEEcCCChhHHhhHHHHHHHHHhCC--CeEEEEEECCC-------C-HH----HHHH------------
Q 029208 108 SQAGDRLV-IVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE-------N-KP----MCKS------------ 160 (197)
Q Consensus 108 ~~~~~k~v-lv~F~a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-------~-~~----l~~~------------ 160 (197)
.+.+++++ ++.+||+||++|+...|.+.++.++|. ++.++.|+++. . .+ +.++
T Consensus 36 s~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d 115 (183)
T PTZ00256 36 SKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIE 115 (183)
T ss_pred HHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEe
Confidence 34457754 456699999999999999999999886 48899887631 0 11 0111
Q ss_pred ------------------------CCCCcccE---EEEEeCCCceEEEeecCccHHHHHhhh
Q 029208 161 ------------------------LNVKVLPY---FHFYRGAHGQLESFSCSLAKVMLRILI 195 (197)
Q Consensus 161 ------------------------~~v~~~Pt---~~~~~~g~~~~~~~~g~~~~~~l~~fI 195 (197)
+++.++|+ .++++..+..+..+.|..+.+.+...|
T Consensus 116 ~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I 177 (183)
T PTZ00256 116 VNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDI 177 (183)
T ss_pred cCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHH
Confidence 13447794 577777776888888988777665544
No 128
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.75 E-value=3.1e-08 Score=66.02 Aligned_cols=55 Identities=18% Similarity=0.383 Sum_probs=42.0
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHH-----CCCCcccEEEEEeCCC
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKS-----LNVKVLPYFHFYRGAH 176 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~-----~~v~~~Pt~~~~~~g~ 176 (197)
++.||++||++|+++.+.+.++. +.+-.+|+++++...+. +++.++|++ ++.+|.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~-----~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~ 61 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG-----AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGS 61 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC-----CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCe
Confidence 56799999999999999987663 44567888877665554 489999997 465543
No 129
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.70 E-value=2.8e-09 Score=85.29 Aligned_cols=96 Identities=21% Similarity=0.334 Sum_probs=82.6
Q ss_pred EEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC--CeEEEEEECCCCHHHHHHCCCCcccEEEEE
Q 029208 95 IDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDENKPMCKSLNVKVLPYFHFY 172 (197)
Q Consensus 95 ~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~ 172 (197)
+...+.+++...+. .-+++.|+++||+.|+...|.++.++.--. ++++.+||++.|+.+.-+|-+...|||.-.
T Consensus 26 ~~~~~eenw~~~l~----gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHv 101 (248)
T KOG0913|consen 26 LTRIDEENWKELLT----GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHV 101 (248)
T ss_pred eEEecccchhhhhc----hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEe
Confidence 44556777777763 468999999999999999999999987544 499999999999999999999999999988
Q ss_pred eCCCceEEEeecCccHHHHHhhhc
Q 029208 173 RGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 173 ~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
++| +..+|+|..++..+..|+.
T Consensus 102 kDG--eFrrysgaRdk~dfisf~~ 123 (248)
T KOG0913|consen 102 KDG--EFRRYSGARDKNDFISFEE 123 (248)
T ss_pred ecc--ccccccCcccchhHHHHHH
Confidence 875 6899999999998888864
No 130
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.68 E-value=1.5e-07 Score=73.07 Aligned_cols=76 Identities=16% Similarity=0.108 Sum_probs=58.8
Q ss_pred cCCCeEEEEEE-cCCChhHHhhHHHHHHHHHhCC--CeEEEEEECCC----------------------------CHHHH
Q 029208 110 AGDRLVIVEFY-GTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE----------------------------NKPMC 158 (197)
Q Consensus 110 ~~~k~vlv~F~-a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~----------------------------~~~l~ 158 (197)
.+++.+||+|| +.||++|....+.+.++.+++. ++.++.|..|. ...+.
T Consensus 27 ~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 106 (173)
T cd03015 27 YKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKIS 106 (173)
T ss_pred hCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHH
Confidence 35789999999 8999999999999999998875 47777776543 12356
Q ss_pred HHCCCC------cccEEEEEeCCCceEEEeecC
Q 029208 159 KSLNVK------VLPYFHFYRGAHGQLESFSCS 185 (197)
Q Consensus 159 ~~~~v~------~~Pt~~~~~~g~~~~~~~~g~ 185 (197)
+.|++. ..|+.+++++.+.....+.+.
T Consensus 107 ~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~ 139 (173)
T cd03015 107 RDYGVLDEEEGVALRGTFIIDPEGIIRHITVND 139 (173)
T ss_pred HHhCCccccCCceeeEEEEECCCCeEEEEEecC
Confidence 778876 578999998777666666544
No 131
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2.2e-07 Score=70.25 Aligned_cols=84 Identities=14% Similarity=0.267 Sum_probs=68.9
Q ss_pred CCCeEEEEEEcCCChhHHhhHHHHH---HHHHhCC-CeEEEEEECCC----------------CHHHHHHCCCCcccEEE
Q 029208 111 GDRLVIVEFYGTWCASCRALFPKLC---RTAEEHP-EIVFLKVNFDE----------------NKPMCKSLNVKVLPYFH 170 (197)
Q Consensus 111 ~~k~vlv~F~a~wC~~Ck~~~p~l~---~la~~~~-~v~~~~Vd~d~----------------~~~l~~~~~v~~~Pt~~ 170 (197)
.++..++.|-.+.|..|..+...+. ++.+-+. ++.++.+++.. ..+|++.|+++++||++
T Consensus 41 ~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfv 120 (182)
T COG2143 41 NDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFV 120 (182)
T ss_pred cCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEE
Confidence 4899999999999999999998776 3444444 38888888753 25899999999999999
Q ss_pred EEeCCCceEEEeecCccHHHHHhh
Q 029208 171 FYRGAHGQLESFSCSLAKVMLRIL 194 (197)
Q Consensus 171 ~~~~g~~~~~~~~g~~~~~~l~~f 194 (197)
||+..++.+-.+.|-+++++....
T Consensus 121 Ffdk~Gk~Il~lPGY~ppe~Fl~v 144 (182)
T COG2143 121 FFDKTGKTILELPGYMPPEQFLAV 144 (182)
T ss_pred EEcCCCCEEEecCCCCCHHHHHHH
Confidence 998877789999999999876543
No 132
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.66 E-value=1.7e-07 Score=71.17 Aligned_cols=81 Identities=15% Similarity=0.119 Sum_probs=61.9
Q ss_pred cCCCeEEEEEEcC-CChhHHhhHHHHHHHHHhCC--CeEEEEEECCC---------------------CHHHHHHCCCCc
Q 029208 110 AGDRLVIVEFYGT-WCASCRALFPKLCRTAEEHP--EIVFLKVNFDE---------------------NKPMCKSLNVKV 165 (197)
Q Consensus 110 ~~~k~vlv~F~a~-wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~---------------------~~~l~~~~~v~~ 165 (197)
.++++++|+||+. ||+.|....+.+.++.+++. ++.++.|..|. ...+.+.|++..
T Consensus 28 ~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 107 (154)
T PRK09437 28 FQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWG 107 (154)
T ss_pred hCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCc
Confidence 4578999999976 68889999999999988874 48888887653 234778888765
Q ss_pred c------------cEEEEEeCCCceEEEeecCccHHH
Q 029208 166 L------------PYFHFYRGAHGQLESFSCSLAKVM 190 (197)
Q Consensus 166 ~------------Pt~~~~~~g~~~~~~~~g~~~~~~ 190 (197)
. |+.+++++.+..+..+.|..+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~ 144 (154)
T PRK09437 108 EKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNH 144 (154)
T ss_pred ccccccccccCcceEEEEECCCCEEEEEEcCCCcchh
Confidence 4 677888777767788887665544
No 133
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.66 E-value=1.2e-07 Score=72.90 Aligned_cols=80 Identities=15% Similarity=0.216 Sum_probs=53.4
Q ss_pred hHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHH---HHHHhCC-CeEEEEEECCCCHHHHHHC--------CCCccc
Q 029208 100 TQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLC---RTAEEHP-EIVFLKVNFDENKPMCKSL--------NVKVLP 167 (197)
Q Consensus 100 ~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~---~la~~~~-~v~~~~Vd~d~~~~l~~~~--------~v~~~P 167 (197)
.+.++.+-++ +|+++|.++.+||..|+.|..... ++++.+. ++.-++||.++.+++.+.| +..|+|
T Consensus 27 ~ea~~~Ak~e--~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwP 104 (163)
T PF03190_consen 27 EEALEKAKKE--NKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWP 104 (163)
T ss_dssp HHHHHHHHHH--T--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SS
T ss_pred HHHHHHHHhc--CCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCC
Confidence 4566666555 899999999999999999986433 4455443 4888999999999998887 788999
Q ss_pred EEEEEeCCCceEEE
Q 029208 168 YFHFYRGAHGQLES 181 (197)
Q Consensus 168 t~~~~~~g~~~~~~ 181 (197)
+.+|..+.++.+..
T Consensus 105 l~vfltPdg~p~~~ 118 (163)
T PF03190_consen 105 LTVFLTPDGKPFFG 118 (163)
T ss_dssp EEEEE-TTS-EEEE
T ss_pred ceEEECCCCCeeee
Confidence 99999987755443
No 134
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.65 E-value=4.5e-07 Score=74.69 Aligned_cols=90 Identities=16% Similarity=0.169 Sum_probs=69.7
Q ss_pred HHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCC-----------HHHHHHCCCCcccEEE
Q 029208 102 EFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN-----------KPMCKSLNVKVLPYFH 170 (197)
Q Consensus 102 ~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~-----------~~l~~~~~v~~~Pt~~ 170 (197)
+-.+.|++..++.-+++||...|++|+++.|.+..++++|. +.++.|++|.. ..+++++||..+|+++
T Consensus 140 ~~~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~ 218 (256)
T TIGR02739 140 QKEKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALY 218 (256)
T ss_pred HHHHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEE
Confidence 34445555556799999999999999999999999999985 66666666643 5688999999999999
Q ss_pred EEeCCCceE-EEeecCccHHHHH
Q 029208 171 FYRGAHGQL-ESFSCSLAKVMLR 192 (197)
Q Consensus 171 ~~~~g~~~~-~~~~g~~~~~~l~ 192 (197)
+...+.+.. .--.|..+.++|.
T Consensus 219 Lv~~~t~~~~pv~~G~iS~deL~ 241 (256)
T TIGR02739 219 LVNPKSQKMSPLAYGFISQDELK 241 (256)
T ss_pred EEECCCCcEEEEeeccCCHHHHH
Confidence 998774444 3444777777764
No 135
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.64 E-value=2.7e-07 Score=72.68 Aligned_cols=74 Identities=11% Similarity=0.078 Sum_probs=57.2
Q ss_pred hcCCCeEEEEEE-cCCChhHHhhHHHHHHHHHhCC--CeEEEEEECCC-------------------------CHHHHHH
Q 029208 109 QAGDRLVIVEFY-GTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE-------------------------NKPMCKS 160 (197)
Q Consensus 109 ~~~~k~vlv~F~-a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-------------------------~~~l~~~ 160 (197)
+..++++||+|| +.||+.|....+.+.++.+++. ++.++.|..|. +..+++.
T Consensus 28 d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~ 107 (187)
T TIGR03137 28 DVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRN 107 (187)
T ss_pred HHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHH
Confidence 345789999999 9999999999999999988874 57777776553 2356788
Q ss_pred CCCC------cccEEEEEeCCCceEEEe
Q 029208 161 LNVK------VLPYFHFYRGAHGQLESF 182 (197)
Q Consensus 161 ~~v~------~~Pt~~~~~~g~~~~~~~ 182 (197)
|++. ..|+.++++..+.....+
T Consensus 108 ~gv~~~~~g~~~p~tfiID~~G~I~~~~ 135 (187)
T TIGR03137 108 FGVLIEEAGLADRGTFVIDPEGVIQAVE 135 (187)
T ss_pred hCCcccCCCceeeEEEEECCCCEEEEEE
Confidence 8886 469999997666455544
No 136
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2.5e-08 Score=79.48 Aligned_cols=94 Identities=20% Similarity=0.382 Sum_probs=81.0
Q ss_pred eEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEEEEe
Q 029208 94 MIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYR 173 (197)
Q Consensus 94 ~~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~ 173 (197)
++.+...++| +.+ +++.++++||+.||.+|+.+...+..+++..+++.|++++.++.++++..+.+...|++.++.
T Consensus 3 v~~i~~~~~f---~~~-~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~ 78 (227)
T KOG0911|consen 3 VQFIVFQEQF---LDQ-KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVFFF 78 (227)
T ss_pred ceeehhHHHH---HHh-ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeeeee
Confidence 4567777888 323 589999999999999999999999999999988999999999999999999999999999997
Q ss_pred CCCceEEEeecCccHHHHH
Q 029208 174 GAHGQLESFSCSLAKVMLR 192 (197)
Q Consensus 174 ~g~~~~~~~~g~~~~~~l~ 192 (197)
.+. .+.+..|..+.....
T Consensus 79 ~~~-~v~~l~~~~~~~~~~ 96 (227)
T KOG0911|consen 79 LGE-KVDRLSGADPPFLVS 96 (227)
T ss_pred cch-hhhhhhccCcHHHHH
Confidence 766 667787777765443
No 137
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.62 E-value=3.8e-07 Score=68.48 Aligned_cols=76 Identities=12% Similarity=0.075 Sum_probs=57.7
Q ss_pred CC-CeEEEEEE-cCCChhHHhhHHHHHHHHHhCC--CeEEEEEECCC---------------------C--HHHHHHCCC
Q 029208 111 GD-RLVIVEFY-GTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE---------------------N--KPMCKSLNV 163 (197)
Q Consensus 111 ~~-k~vlv~F~-a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~---------------------~--~~l~~~~~v 163 (197)
.+ ++++|.|| ++||+.|....|.+.++.+++. ++.++.|+.+. . ..+.+.|++
T Consensus 26 ~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~ 105 (149)
T cd03018 26 RGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGV 105 (149)
T ss_pred cCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCC
Confidence 35 78888887 9999999999999999998875 48888776542 2 456778888
Q ss_pred Cc----c--cEEEEEeCCCceEEEeecCc
Q 029208 164 KV----L--PYFHFYRGAHGQLESFSCSL 186 (197)
Q Consensus 164 ~~----~--Pt~~~~~~g~~~~~~~~g~~ 186 (197)
.. + |+++++++.+.....+.|..
T Consensus 106 ~~~~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 106 FDEDLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred ccccCCCccceEEEECCCCEEEEEEecCC
Confidence 73 3 38888876665666776654
No 138
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.62 E-value=3.4e-07 Score=68.46 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=33.4
Q ss_pred CeEEEEEEcCCChhHHhhHHHHHHHHHhCC--CeEEEEEECCC
Q 029208 113 RLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE 153 (197)
Q Consensus 113 k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~ 153 (197)
..+|++|++.||+.|+...|.+.++.+++. ++.++.|..+.
T Consensus 25 ~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~ 67 (149)
T cd02970 25 PVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPES 67 (149)
T ss_pred CEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCC
Confidence 455555569999999999999999999874 58888888664
No 139
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.61 E-value=4.6e-07 Score=60.97 Aligned_cols=73 Identities=19% Similarity=0.316 Sum_probs=56.0
Q ss_pred EEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCceEEEeec-CccHHHHHhhh
Q 029208 117 VEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSC-SLAKVMLRILI 195 (197)
Q Consensus 117 v~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g-~~~~~~l~~fI 195 (197)
|.+++++|+.|..+...++++++.+. +.+--+|..+.+++ ++|||.++|++++ +|+ ..+.| ....++++.||
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~---~~~~G~~p~~~el~~~l 75 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGK---VVFVGRVPSKEELKELL 75 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTE---EEEESS--HHHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCE---EEEEecCCCHHHHHHHh
Confidence 34478889999999999999999984 77777777666666 9999999999943 543 45777 77788999887
Q ss_pred c
Q 029208 196 Q 196 (197)
Q Consensus 196 ~ 196 (197)
+
T Consensus 76 ~ 76 (76)
T PF13192_consen 76 E 76 (76)
T ss_dssp H
T ss_pred C
Confidence 4
No 140
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.55 E-value=4.5e-07 Score=67.45 Aligned_cols=42 Identities=19% Similarity=0.389 Sum_probs=36.6
Q ss_pred CCCeEEEEEEcCCChh-HHhhHHHHHHHHHhCC-----CeEEEEEECC
Q 029208 111 GDRLVIVEFYGTWCAS-CRALFPKLCRTAEEHP-----EIVFLKVNFD 152 (197)
Q Consensus 111 ~~k~vlv~F~a~wC~~-Ck~~~p~l~~la~~~~-----~v~~~~Vd~d 152 (197)
.+++++|.||++||++ |....+.+.++.+++. ++.++.|..|
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 4789999999999998 9999999999988875 3888888765
No 141
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.51 E-value=1e-06 Score=65.30 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=60.1
Q ss_pred CCCeEEEEEE-cCCChhHHhhHHHHHHHHHhCC--CeEEEEEECCC----------------------CHHHHHHCCCCc
Q 029208 111 GDRLVIVEFY-GTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE----------------------NKPMCKSLNVKV 165 (197)
Q Consensus 111 ~~k~vlv~F~-a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~----------------------~~~l~~~~~v~~ 165 (197)
.+++++|.|| +.||+.|....|.+.++.+++. ++.++.|..+. ...+.+.|++..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 5789999999 7899999999999999998863 57888777653 234677888776
Q ss_pred cc---------EEEEEeCCCceEEEeecCcc
Q 029208 166 LP---------YFHFYRGAHGQLESFSCSLA 187 (197)
Q Consensus 166 ~P---------t~~~~~~g~~~~~~~~g~~~ 187 (197)
.| +++++++.+..+..+.|...
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 65 78888876667777777654
No 142
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.50 E-value=1.9e-06 Score=70.68 Aligned_cols=89 Identities=13% Similarity=0.124 Sum_probs=66.4
Q ss_pred HHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCC-----------CHHHHHHCCCCcccEEEE
Q 029208 103 FLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDE-----------NKPMCKSLNVKVLPYFHF 171 (197)
Q Consensus 103 ~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~-----------~~~l~~~~~v~~~Pt~~~ 171 (197)
-.+.|++..++.-|++||...|++|+++.|.+..++++|. +.++.|++|. +...+++++|..+|++++
T Consensus 134 ~~~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg-~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~L 212 (248)
T PRK13703 134 QRQAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG-LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALML 212 (248)
T ss_pred HHHHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEE
Confidence 3444554456788999999999999999999999999985 4444444442 344678999999999999
Q ss_pred EeCCCceE-EEeecCccHHHHH
Q 029208 172 YRGAHGQL-ESFSCSLAKVMLR 192 (197)
Q Consensus 172 ~~~g~~~~-~~~~g~~~~~~l~ 192 (197)
...+.+.. .--.|..+.++|.
T Consensus 213 v~~~t~~~~pv~~G~iS~deL~ 234 (248)
T PRK13703 213 VDPKSGSVRPLSYGFITQDDLA 234 (248)
T ss_pred EECCCCcEEEEeeccCCHHHHH
Confidence 98765444 3444777777663
No 143
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.48 E-value=3e-06 Score=61.81 Aligned_cols=84 Identities=12% Similarity=0.203 Sum_probs=66.1
Q ss_pred CCCeEEEEEEcC----CChhHHhhH--HHHHHHHHhCCCeEEEEEECCCC--HHHHHHCCCCcccEEEEEe---CCCceE
Q 029208 111 GDRLVIVEFYGT----WCASCRALF--PKLCRTAEEHPEIVFLKVNFDEN--KPMCKSLNVKVLPYFHFYR---GAHGQL 179 (197)
Q Consensus 111 ~~k~vlv~F~a~----wC~~Ck~~~--p~l~~la~~~~~v~~~~Vd~d~~--~~l~~~~~v~~~Pt~~~~~---~g~~~~ 179 (197)
..|.++|++|++ ||..|+... |.+.+..++ ++.+...|++.. .+++..+++.++|++.++. +....+
T Consensus 16 e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv 93 (116)
T cd02991 16 ELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTIV 93 (116)
T ss_pred hCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEEE
Confidence 489999999999 999998665 555555543 588889998754 4688999999999999994 333457
Q ss_pred EEeecCccHHHHHhhhc
Q 029208 180 ESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 180 ~~~~g~~~~~~l~~fI~ 196 (197)
.++.|..+.+++...++
T Consensus 94 ~~i~G~~~~~~ll~~L~ 110 (116)
T cd02991 94 GRLEGLIQPEDLINRLT 110 (116)
T ss_pred EEEeCCCCHHHHHHHHH
Confidence 89999999988876553
No 144
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.47 E-value=3.9e-06 Score=61.81 Aligned_cols=88 Identities=20% Similarity=0.274 Sum_probs=70.3
Q ss_pred EEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC-eEEEEEECCCCHHHHHHCCCCcccEEEEEe
Q 029208 95 IDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYR 173 (197)
Q Consensus 95 ~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~ 173 (197)
.++++..+.++++.+..++.++|-|.-+|-+.|.++...+.+.+++.++ ..++-||+++-+++.+.|.+...=|++||-
T Consensus 3 ~~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~dP~tvmFF~ 82 (133)
T PF02966_consen 3 PHLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELYDPCTVMFFF 82 (133)
T ss_dssp EEE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS-SSEEEEEEE
T ss_pred cccCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccCCCeEEEEEe
Confidence 4677888999999887899999999999999999999999999999887 789999999999999999999444566664
Q ss_pred CCCceEEEe
Q 029208 174 GAHGQLESF 182 (197)
Q Consensus 174 ~g~~~~~~~ 182 (197)
+++.....+
T Consensus 83 rnkhm~vD~ 91 (133)
T PF02966_consen 83 RNKHMMVDF 91 (133)
T ss_dssp TTEEEEEES
T ss_pred cCeEEEEEe
Confidence 555333333
No 145
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.47 E-value=2e-06 Score=67.89 Aligned_cols=75 Identities=12% Similarity=0.111 Sum_probs=58.7
Q ss_pred HhcCCCeEEEEEE-cCCChhHHhhHHHHHHHHHhCC--CeEEEEEECCC-------------------------CHHHHH
Q 029208 108 SQAGDRLVIVEFY-GTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE-------------------------NKPMCK 159 (197)
Q Consensus 108 ~~~~~k~vlv~F~-a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~-------------------------~~~l~~ 159 (197)
.+..+++++|.|| ++||+.|....+.+.+..+++. ++.++.|..|. +..+++
T Consensus 27 ~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~ 106 (187)
T PRK10382 27 KDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTR 106 (187)
T ss_pred HHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHH
Confidence 3446789999999 9999999999999999999885 47777777653 345788
Q ss_pred HCCC----Ccc--cEEEEEeCCCceEEEe
Q 029208 160 SLNV----KVL--PYFHFYRGAHGQLESF 182 (197)
Q Consensus 160 ~~~v----~~~--Pt~~~~~~g~~~~~~~ 182 (197)
.|++ .++ |+.+++++++.....+
T Consensus 107 ~ygv~~~~~g~~~r~tfIID~~G~I~~~~ 135 (187)
T PRK10382 107 NFDNMREDEGLADRATFVVDPQGIIQAIE 135 (187)
T ss_pred HcCCCcccCCceeeEEEEECCCCEEEEEE
Confidence 8998 366 9999998776554443
No 146
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.47 E-value=4.7e-07 Score=61.30 Aligned_cols=54 Identities=15% Similarity=0.306 Sum_probs=42.7
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCH-----HHHHHCCCCcccEEE
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENK-----PMCKSLNVKVLPYFH 170 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~-----~l~~~~~v~~~Pt~~ 170 (197)
++.|+++||++|+.+.+.+.++.-. +.+.++.+|.+++. .+.+.+++.++|+++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~ 59 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF 59 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE
Confidence 4679999999999999999998621 23788888877554 266778999999983
No 147
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.47 E-value=1.1e-06 Score=69.99 Aligned_cols=86 Identities=9% Similarity=0.116 Sum_probs=60.6
Q ss_pred cCCCeEEE-EEEcCCChhHHhhHHHHHHHHHhCC--CeEEEEEECCC---------------------------CHHHHH
Q 029208 110 AGDRLVIV-EFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE---------------------------NKPMCK 159 (197)
Q Consensus 110 ~~~k~vlv-~F~a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~---------------------------~~~l~~ 159 (197)
..++.++| .||++||+.|....+.+.++.+++. ++.++.|.+|. +..+++
T Consensus 25 ~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~ 104 (202)
T PRK13190 25 YKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAR 104 (202)
T ss_pred hCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHH
Confidence 34676665 6899999999999999999988875 47777776552 245778
Q ss_pred HCCCC------cccEEEEEeCCCceEEEe----ecCccHHHHHhhh
Q 029208 160 SLNVK------VLPYFHFYRGAHGQLESF----SCSLAKVMLRILI 195 (197)
Q Consensus 160 ~~~v~------~~Pt~~~~~~g~~~~~~~----~g~~~~~~l~~fI 195 (197)
.|++. .+|+++++++++...... .+..+.+++...|
T Consensus 105 ~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l 150 (202)
T PRK13190 105 EYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRIT 150 (202)
T ss_pred HcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 88874 589999998776443333 2345555555444
No 148
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.39 E-value=7.2e-06 Score=63.36 Aligned_cols=111 Identities=17% Similarity=0.225 Sum_probs=85.1
Q ss_pred chhhhcCCCCeEEeCChHHHHHHHHhcCCCe-EEEEEEcCCChhHHhhHHHHHHHHHhCCC-eEEEEEECCCCHHHHHHC
Q 029208 84 PKWWEKNAPNMIDIHSTQEFLEALSQAGDRL-VIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSL 161 (197)
Q Consensus 84 p~~~~~~~~~~~~i~~~~~~~~~l~~~~~k~-vlv~F~a~wC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~ 161 (197)
..|.....-+.+...+.+++...... +++ +++.|..........+...+.++++++.+ +.|+.+|++..+.+++.+
T Consensus 68 ~~fI~~~~~P~v~~~t~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~ 145 (184)
T PF13848_consen 68 KKFIKKNSFPLVPELTPENFEKLFSS--PKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYF 145 (184)
T ss_dssp HHHHHHHSSTSCEEESTTHHHHHHST--SSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHT
T ss_pred HHHHHHhccccccccchhhHHHHhcC--CCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHc
Confidence 44554444333444456678776654 444 88888877788899999999999999987 999999999999999999
Q ss_pred CCC--cccEEEEEeCCCceE-EEeecCccHHHHHhhhc
Q 029208 162 NVK--VLPYFHFYRGAHGQL-ESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 162 ~v~--~~Pt~~~~~~g~~~~-~~~~g~~~~~~l~~fI~ 196 (197)
++. .+|++++++..++.. -...+..+.+.+.+|++
T Consensus 146 ~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~ 183 (184)
T PF13848_consen 146 GIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLN 183 (184)
T ss_dssp TTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHH
T ss_pred CCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhc
Confidence 998 899999998544332 22378899999999985
No 149
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.38 E-value=2.6e-06 Score=55.58 Aligned_cols=68 Identities=25% Similarity=0.358 Sum_probs=47.4
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHC----CCCcccEEEEEeCCCceEEEeecCccHHHH
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSL----NVKVLPYFHFYRGAHGQLESFSCSLAKVML 191 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~----~v~~~Pt~~~~~~g~~~~~~~~g~~~~~~l 191 (197)
++.|+++||++|+.+...+.+ .++.+..+|++.+....+.+ ++.++|++++ +| ..+.| .+..++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-----~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~----~~i~g-~~~~~l 69 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-----RGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD----EHLSG-FRPDKL 69 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-----CCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC----EEEec-CCHHHH
Confidence 567999999999999888876 35677778888765544433 6889999976 22 23444 455566
Q ss_pred Hhhh
Q 029208 192 RILI 195 (197)
Q Consensus 192 ~~fI 195 (197)
++++
T Consensus 70 ~~~~ 73 (73)
T cd02976 70 RALL 73 (73)
T ss_pred HhhC
Confidence 6653
No 150
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.36 E-value=4.3e-06 Score=76.23 Aligned_cols=88 Identities=15% Similarity=0.169 Sum_probs=71.5
Q ss_pred HHHHHHHhcCCCeE-EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCceEE
Q 029208 102 EFLEALSQAGDRLV-IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLE 180 (197)
Q Consensus 102 ~~~~~l~~~~~k~v-lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~ 180 (197)
+..+.+++. ++++ +-.|.+++|++|......+++++.+.+++..-.+|.++.++++++|+|.++|++++ +++ .
T Consensus 466 ~~~~~i~~~-~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~---~ 539 (555)
T TIGR03143 466 ELLEKIKKI-TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQ---Q 539 (555)
T ss_pred HHHHHHHhc-CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCE---E
Confidence 344445443 4555 44568999999999999999999999999999999999999999999999999987 433 3
Q ss_pred EeecCccHHHHHhhh
Q 029208 181 SFSCSLAKVMLRILI 195 (197)
Q Consensus 181 ~~~g~~~~~~l~~fI 195 (197)
.+.|..+.+++..+|
T Consensus 540 ~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 540 VYFGKKTIEEMLELI 554 (555)
T ss_pred EEeeCCCHHHHHHhh
Confidence 355888999988876
No 151
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.29 E-value=1.3e-05 Score=57.16 Aligned_cols=97 Identities=14% Similarity=0.213 Sum_probs=69.5
Q ss_pred EEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC-eEEEEEECCCCH----HHHHHCCCC-cccE
Q 029208 95 IDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENK----PMCKSLNVK-VLPY 168 (197)
Q Consensus 95 ~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~~~----~l~~~~~v~-~~Pt 168 (197)
..+.+.+++++.+++..+++++|+=.++.|+-.......|++..+..++ +.++.+|+-+++ .++++|||. .-|-
T Consensus 2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ 81 (105)
T PF11009_consen 2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ 81 (105)
T ss_dssp -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence 5688999999999887789999999999999999999999999998886 999999998775 468899975 7999
Q ss_pred EEEEeCCCceEEEeecCccHHHH
Q 029208 169 FHFYRGAHGQLESFSCSLAKVML 191 (197)
Q Consensus 169 ~~~~~~g~~~~~~~~g~~~~~~l 191 (197)
++++++|+..-..-.+..+.+.+
T Consensus 82 ~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 82 VILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEEETTEEEEEEEGGG-SHHHH
T ss_pred EEEEECCEEEEECccccCCHHhc
Confidence 99999988444444455555544
No 152
>PRK15000 peroxidase; Provisional
Probab=98.29 E-value=7e-06 Score=65.42 Aligned_cols=75 Identities=12% Similarity=0.188 Sum_probs=58.6
Q ss_pred CCCeEEEEEEc-CCChhHHhhHHHHHHHHHhCC--CeEEEEEECCC----------------------------CHHHHH
Q 029208 111 GDRLVIVEFYG-TWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE----------------------------NKPMCK 159 (197)
Q Consensus 111 ~~k~vlv~F~a-~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~----------------------------~~~l~~ 159 (197)
++++++|+||+ +||+.|....+.+.++.+++. ++.++.|.+|. +..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 47899999999 599999999999999999885 47788777662 124667
Q ss_pred HCCCC------cccEEEEEeCCCceEEEeecC
Q 029208 160 SLNVK------VLPYFHFYRGAHGQLESFSCS 185 (197)
Q Consensus 160 ~~~v~------~~Pt~~~~~~g~~~~~~~~g~ 185 (197)
.|++. .+|+.+++++.+.....+.+.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~ 144 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVND 144 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecC
Confidence 78887 799999998776555555543
No 153
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.28 E-value=3.7e-06 Score=57.59 Aligned_cols=55 Identities=18% Similarity=0.284 Sum_probs=45.6
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCH----HHHHHCC--CCcccEEE
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENK----PMCKSLN--VKVLPYFH 170 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~----~l~~~~~--v~~~Pt~~ 170 (197)
++.|+.+||++|++....++++..++.++.+..+|++++. ++.+.++ +..+|+++
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if 63 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF 63 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE
Confidence 6779999999999999999999988778889999988653 4555444 58999975
No 154
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.25 E-value=1.1e-05 Score=72.78 Aligned_cols=91 Identities=13% Similarity=0.166 Sum_probs=72.4
Q ss_pred hHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCceE
Q 029208 100 TQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQL 179 (197)
Q Consensus 100 ~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~ 179 (197)
.++..+.+++..+..-+..|++++|++|......+++++...+++.+-.+|..++++++++|++.++|++++ +++
T Consensus 104 ~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~--- 178 (517)
T PRK15317 104 DQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGE--- 178 (517)
T ss_pred CHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCc---
Confidence 344555566544455588899999999999999999999999999999999999999999999999999965 443
Q ss_pred EEeecCccHHHHHhhh
Q 029208 180 ESFSCSLAKVMLRILI 195 (197)
Q Consensus 180 ~~~~g~~~~~~l~~fI 195 (197)
..+.|..+.+++.+.+
T Consensus 179 ~~~~g~~~~~~~~~~~ 194 (517)
T PRK15317 179 EFGQGRMTLEEILAKL 194 (517)
T ss_pred EEEecCCCHHHHHHHH
Confidence 3466777776655443
No 155
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.18 E-value=2.6e-05 Score=54.25 Aligned_cols=93 Identities=18% Similarity=0.265 Sum_probs=73.1
Q ss_pred EEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC-CeEEEEEECCCCHHHHHHCCCCcccEEEEEe
Q 029208 95 IDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP-EIVFLKVNFDENKPMCKSLNVKVLPYFHFYR 173 (197)
Q Consensus 95 ~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~ 173 (197)
..+.+.++++..+.. ++.++|-|+.++|. .....+.++|+.+. ++.|+.+. +.++.+++++.. |++++|+
T Consensus 2 ~~i~s~~~l~~~~~~--~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~ 72 (97)
T cd02981 2 KELTSKEELEKFLDK--DDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFK 72 (97)
T ss_pred eecCCHHHHHHHhcc--CCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeC
Confidence 356677778776654 68888899999887 56778888998886 58887766 567888888754 8999998
Q ss_pred CCCceEEEeecCccHHHHHhhhc
Q 029208 174 GAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 174 ~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
+.......|.|....+.+..||.
T Consensus 73 ~~~~~~~~y~g~~~~~~l~~fi~ 95 (97)
T cd02981 73 PFEEEPVEYDGEFTEESLVEFIK 95 (97)
T ss_pred CcccCCccCCCCCCHHHHHHHHH
Confidence 76556677999988999999985
No 156
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.18 E-value=1.8e-05 Score=65.54 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=55.6
Q ss_pred CCCeEEEEEE-cCCChhHHhhHHHHHHHHHhCC--CeEEEEEECCC----------------------------CHHHHH
Q 029208 111 GDRLVIVEFY-GTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE----------------------------NKPMCK 159 (197)
Q Consensus 111 ~~k~vlv~F~-a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~----------------------------~~~l~~ 159 (197)
+++.+|+.|| ++||+.|....+.+.+..+++. ++.++.|.+|. +..+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 4678888888 8999999999999999998885 47777776653 234778
Q ss_pred HCCCC-----cccEEEEEeCCCceEEEe
Q 029208 160 SLNVK-----VLPYFHFYRGAHGQLESF 182 (197)
Q Consensus 160 ~~~v~-----~~Pt~~~~~~g~~~~~~~ 182 (197)
.||+. ..|+.+++++.+.....+
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~ 204 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVA 204 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEE
Confidence 88985 589999998766454444
No 157
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.18 E-value=1.5e-05 Score=63.52 Aligned_cols=72 Identities=8% Similarity=0.150 Sum_probs=52.7
Q ss_pred Ce-EEEEEEcCCChhHHhhHHHHHHHHHhCC--CeEEEEEECCC---------------------------CHHHHHHCC
Q 029208 113 RL-VIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE---------------------------NKPMCKSLN 162 (197)
Q Consensus 113 k~-vlv~F~a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~---------------------------~~~l~~~~~ 162 (197)
+. +|+.||++||+.|....+.+.++.+++. ++.++.|.+|. +..+++.|+
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg 105 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLG 105 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcC
Confidence 54 5668999999999999999999999885 58888887663 235677888
Q ss_pred CC----c----ccEEEEEeCCCceEEEeec
Q 029208 163 VK----V----LPYFHFYRGAHGQLESFSC 184 (197)
Q Consensus 163 v~----~----~Pt~~~~~~g~~~~~~~~g 184 (197)
+. + .|+.+++++++.......+
T Consensus 106 ~~~~~~~~~~~~r~~fiID~~G~I~~~~~~ 135 (203)
T cd03016 106 MIDPDAGSTLTVRAVFIIDPDKKIRLILYY 135 (203)
T ss_pred CccccCCCCceeeEEEEECCCCeEEEEEec
Confidence 75 2 3468888766644444433
No 158
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.10 E-value=1.1e-05 Score=65.79 Aligned_cols=79 Identities=11% Similarity=0.169 Sum_probs=58.2
Q ss_pred CCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEE--E--------------------------------------
Q 029208 111 GDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKV--N-------------------------------------- 150 (197)
Q Consensus 111 ~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~V--d-------------------------------------- 150 (197)
.++.+++.|.-+.|++|+++.+.+.++.+. ++.+..+ .
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~ 183 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS 183 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence 367889999999999999999999887542 3333221 1
Q ss_pred ----CCCCHHHHHHCCCCcccEEEEEeCCCceEEEeecCccHHHHHhhhc
Q 029208 151 ----FDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 151 ----~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
++++.++++++||.++||++ +.+|. .+.|..+.+++..+|+
T Consensus 184 c~~~v~~~~~la~~lgi~gTPtiv-~~~G~----~~~G~~~~~~L~~~l~ 228 (232)
T PRK10877 184 CDVDIADHYALGVQFGVQGTPAIV-LSNGT----LVPGYQGPKEMKAFLD 228 (232)
T ss_pred ccchHHHhHHHHHHcCCccccEEE-EcCCe----EeeCCCCHHHHHHHHH
Confidence 11234588999999999999 54543 3578899999988874
No 159
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.09 E-value=8.3e-06 Score=64.54 Aligned_cols=76 Identities=17% Similarity=0.211 Sum_probs=54.9
Q ss_pred CCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEE--E---------------------------------------
Q 029208 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKV--N--------------------------------------- 150 (197)
Q Consensus 112 ~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~V--d--------------------------------------- 150 (197)
++..++.|..+.|++|+++.+.+.+ ...++.+..+ .
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~ 153 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP---NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAAS 153 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh---ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccc
Confidence 6889999999999999999998886 1223222211 1
Q ss_pred ----CCCCHHHHHHCCCCcccEEEEEeCCCceEEEeecCccHHHHHhhh
Q 029208 151 ----FDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKVMLRILI 195 (197)
Q Consensus 151 ----~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~fI 195 (197)
++++..+++++||.++||++ |.+|. . +.|..+.+++..+|
T Consensus 154 ~~~~i~~~~~l~~~~gi~gtPtii-~~~G~-~---~~G~~~~~~l~~~L 197 (197)
T cd03020 154 CDNPVAANLALGRQLGVNGTPTIV-LADGR-V---VPGAPPAAQLEALL 197 (197)
T ss_pred cCchHHHHHHHHHHcCCCcccEEE-ECCCe-E---ecCCCCHHHHHhhC
Confidence 11234588999999999997 65654 2 67888888888775
No 160
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.06 E-value=3.2e-05 Score=62.35 Aligned_cols=71 Identities=10% Similarity=0.179 Sum_probs=54.8
Q ss_pred CCCe-EEEEEEcCCChhHHhhHHHHHHHHHhCC--CeEEEEEECCCC---------------------------HHHHHH
Q 029208 111 GDRL-VIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDEN---------------------------KPMCKS 160 (197)
Q Consensus 111 ~~k~-vlv~F~a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~---------------------------~~l~~~ 160 (197)
.++. +|+.|+++||+.|....+.+.++.++|. ++.++.|.+|.. ..+++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 4666 4679999999999999999999999884 588888877641 346777
Q ss_pred CCCC-------cccEEEEEeCCCceEEE
Q 029208 161 LNVK-------VLPYFHFYRGAHGQLES 181 (197)
Q Consensus 161 ~~v~-------~~Pt~~~~~~g~~~~~~ 181 (197)
|++. ..|+++++++.+.....
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~ 134 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLI 134 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEE
Confidence 8863 68999999876644433
No 161
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.05 E-value=9.1e-06 Score=63.92 Aligned_cols=45 Identities=11% Similarity=0.217 Sum_probs=38.4
Q ss_pred HHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC--CeEEEEEECC
Q 029208 107 LSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFD 152 (197)
Q Consensus 107 l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d 152 (197)
+.+.+++++||.|||+||+.|++ .|.++++.++|. ++.++.+.++
T Consensus 20 Ls~~~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 20 LEKYAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred HHHhCCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 44556899999999999999974 889999999986 4899999874
No 162
>PRK13189 peroxiredoxin; Provisional
Probab=98.04 E-value=3.4e-05 Score=62.49 Aligned_cols=69 Identities=10% Similarity=0.167 Sum_probs=52.0
Q ss_pred CCCe-EEEEEEcCCChhHHhhHHHHHHHHHhCC--CeEEEEEECCC---------------------------CHHHHHH
Q 029208 111 GDRL-VIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE---------------------------NKPMCKS 160 (197)
Q Consensus 111 ~~k~-vlv~F~a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~---------------------------~~~l~~~ 160 (197)
.++. +|+.||++||+.|....+.+.++.++|. ++.++.|.+|. +..+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 4664 4557889999999999999999998885 57777777653 2346778
Q ss_pred CCCC-------cccEEEEEeCCCceE
Q 029208 161 LNVK-------VLPYFHFYRGAHGQL 179 (197)
Q Consensus 161 ~~v~-------~~Pt~~~~~~g~~~~ 179 (197)
|++. .+|+.+++++.+...
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir 139 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIR 139 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEE
Confidence 8865 468899998766443
No 163
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.04 E-value=1.8e-05 Score=54.44 Aligned_cols=55 Identities=16% Similarity=0.246 Sum_probs=44.7
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCH----HHHHHCCC--CcccEEE
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENK----PMCKSLNV--KVLPYFH 170 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~----~l~~~~~v--~~~Pt~~ 170 (197)
++.|..+||++|+++...++++..+++++.+..+|++.+. ++.+.++- ..+|+++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if 62 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF 62 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE
Confidence 6679999999999999999999877777888888887533 56666663 7999994
No 164
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.04 E-value=0.00014 Score=54.11 Aligned_cols=103 Identities=19% Similarity=0.288 Sum_probs=78.0
Q ss_pred CCeEEeCChHHHHHHHHhcCCCeEEEEEEcC--CC-hhH-HhhHHHHHHHHHhCCC--eEEEEEECCCCHHHHHHCCCC-
Q 029208 92 PNMIDIHSTQEFLEALSQAGDRLVIVEFYGT--WC-ASC-RALFPKLCRTAEEHPE--IVFLKVNFDENKPMCKSLNVK- 164 (197)
Q Consensus 92 ~~~~~i~~~~~~~~~l~~~~~k~vlv~F~a~--wC-~~C-k~~~p~l~~la~~~~~--v~~~~Vd~d~~~~l~~~~~v~- 164 (197)
+.++++.+.+.+++.-.. ++..+|-|.-. .| ..+ ......+.+++++|++ +.|+.+|.++...+.+.||+.
T Consensus 2 ~~~~~l~~~~~~~~~C~~--~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~ 79 (130)
T cd02983 2 PEIIELTSEDVFEETCEE--KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGG 79 (130)
T ss_pred CceEEecCHHHHHhhccC--CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCc
Confidence 467888888887775544 46667766532 13 223 4667889999999985 899999999999999999995
Q ss_pred -cccEEEEEeCCCceEEEeecCccHHHHHhhhc
Q 029208 165 -VLPYFHFYRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 165 -~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
++|+++++...++....+.|..+.+.+.+|++
T Consensus 80 ~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~ 112 (130)
T cd02983 80 FGYPAMVAINFRKMKFATLKGSFSEDGINEFLR 112 (130)
T ss_pred cCCCEEEEEecccCccccccCccCHHHHHHHHH
Confidence 59999999876532222678899999999874
No 165
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.02 E-value=3.8e-05 Score=61.02 Aligned_cols=77 Identities=13% Similarity=0.155 Sum_probs=57.9
Q ss_pred HhcCCCeEEEEEEc-CCChhHHhhHHHHHHHHHhCC--CeEEEEEECCCC----------------------------HH
Q 029208 108 SQAGDRLVIVEFYG-TWCASCRALFPKLCRTAEEHP--EIVFLKVNFDEN----------------------------KP 156 (197)
Q Consensus 108 ~~~~~k~vlv~F~a-~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~----------------------------~~ 156 (197)
.+..++.++|+||. +||+.|....+.+.++.+++. ++.++.|++|.. .+
T Consensus 32 ~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ 111 (199)
T PTZ00253 32 SSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKS 111 (199)
T ss_pred HHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhH
Confidence 34457899999994 889999999999999999886 578887776632 34
Q ss_pred HHHHCCCC------cccEEEEEeCCCceEEEeec
Q 029208 157 MCKSLNVK------VLPYFHFYRGAHGQLESFSC 184 (197)
Q Consensus 157 l~~~~~v~------~~Pt~~~~~~g~~~~~~~~g 184 (197)
+++.|++. .+|+.+++++.+.......+
T Consensus 112 ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~ 145 (199)
T PTZ00253 112 IARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVN 145 (199)
T ss_pred HHHHcCCcccCCCceEEEEEEECCCCEEEEEEec
Confidence 67888875 46899999877644444333
No 166
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.02 E-value=4.1e-05 Score=63.11 Aligned_cols=84 Identities=11% Similarity=0.237 Sum_probs=61.7
Q ss_pred CCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEEC---------------------------------------
Q 029208 111 GDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNF--------------------------------------- 151 (197)
Q Consensus 111 ~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~--------------------------------------- 151 (197)
..+.+|+.|.-+.|++|+++.+.+.++.+.. ++.+..+..
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g-~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDSG-KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhcC-ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 3578899999999999999999988776542 333322211
Q ss_pred -----------CCCHHHHHHCCCCcccEEEEEeCCCceEEEeecCccHHHHHhhhc
Q 029208 152 -----------DENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 152 -----------d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
+++..+.+++||.|+||+++-+.. +.+..+.|..+.+++.+.+.
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~-G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKD-GTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC-CCEEEecCCCCHHHHHHHhC
Confidence 011236788999999999998643 47778899999999988764
No 167
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.02 E-value=8.4e-05 Score=55.44 Aligned_cols=37 Identities=30% Similarity=0.632 Sum_probs=31.5
Q ss_pred CCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEE
Q 029208 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLK 148 (197)
Q Consensus 112 ~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~ 148 (197)
.+..|+.|+.++|++|+.+.|.+.++..+++++.+..
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~ 41 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVF 41 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEE
Confidence 6789999999999999999999999888777654443
No 168
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.01 E-value=6.8e-05 Score=67.79 Aligned_cols=89 Identities=12% Similarity=0.188 Sum_probs=70.9
Q ss_pred HHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCceEE
Q 029208 101 QEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLE 180 (197)
Q Consensus 101 ~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~ 180 (197)
++..+.+++..+..-+-.|.++.|++|......+.+++..++++..-.+|..++++++++|++.++|++++ +++ .
T Consensus 106 ~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~---~ 180 (515)
T TIGR03140 106 EGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGE---E 180 (515)
T ss_pred HHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCc---E
Confidence 34445565544455688899999999999999999999999999999999999999999999999999976 443 3
Q ss_pred EeecCccHHHHHhh
Q 029208 181 SFSCSLAKVMLRIL 194 (197)
Q Consensus 181 ~~~g~~~~~~l~~f 194 (197)
.+.|..+.+++.+.
T Consensus 181 ~~~g~~~~~~~~~~ 194 (515)
T TIGR03140 181 FHNGRMDLAELLEK 194 (515)
T ss_pred EEecCCCHHHHHHH
Confidence 36677776665443
No 169
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.96 E-value=3e-05 Score=52.16 Aligned_cols=51 Identities=14% Similarity=0.286 Sum_probs=40.5
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCH-----HHHHHCCCCcccEE
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENK-----PMCKSLNVKVLPYF 169 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~-----~l~~~~~v~~~Pt~ 169 (197)
++.|+++||++|+.+...+.++.. .+.++.+|.+++. .+.+..+..++|++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v 57 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV---KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV 57 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC---CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE
Confidence 567999999999999999998865 4667788877652 35566788999996
No 170
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.94 E-value=6.2e-05 Score=60.66 Aligned_cols=72 Identities=14% Similarity=0.217 Sum_probs=53.7
Q ss_pred CCCeEEE-EEEcCCChhHHhhHHHHHHHHHhCC--CeEEEEEECCCC---------------------------HHHHHH
Q 029208 111 GDRLVIV-EFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDEN---------------------------KPMCKS 160 (197)
Q Consensus 111 ~~k~vlv-~F~a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~---------------------------~~l~~~ 160 (197)
.++.++| .|+++||+.|....+.|.++.++|. ++.++.|.+|.. ..+++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 4666554 8899999999999999999999885 588888877632 345677
Q ss_pred CCCC-------cccEEEEEeCCCceEEEe
Q 029208 161 LNVK-------VLPYFHFYRGAHGQLESF 182 (197)
Q Consensus 161 ~~v~-------~~Pt~~~~~~g~~~~~~~ 182 (197)
||+. ..|+.+++++++.....+
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~ 140 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLIL 140 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEE
Confidence 7763 478899998776444433
No 171
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.90 E-value=6.8e-05 Score=59.72 Aligned_cols=84 Identities=23% Similarity=0.443 Sum_probs=73.9
Q ss_pred CCeEEeCChHHHHHHHHhc-CCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEE
Q 029208 92 PNMIDIHSTQEFLEALSQA-GDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFH 170 (197)
Q Consensus 92 ~~~~~i~~~~~~~~~l~~~-~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~ 170 (197)
..+.++.+..+|.+.+... +.-.++|+.|-+--.-|..+...+.-+|++||-++|+++-.. +-....+|...++||++
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss-~~gas~~F~~n~lP~Ll 216 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSS-NTGASDRFSLNVLPTLL 216 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeec-cccchhhhcccCCceEE
Confidence 4688999999999999753 456789999999999999999999999999999999999854 44566899999999999
Q ss_pred EEeCCC
Q 029208 171 FYRGAH 176 (197)
Q Consensus 171 ~~~~g~ 176 (197)
+|++|.
T Consensus 217 iYkgGe 222 (273)
T KOG3171|consen 217 IYKGGE 222 (273)
T ss_pred EeeCCc
Confidence 999876
No 172
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.89 E-value=0.00019 Score=60.96 Aligned_cols=97 Identities=12% Similarity=0.104 Sum_probs=68.4
Q ss_pred EEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhH------HHHHHHHHh---CCCeEEEEEECCCCHHHHHHCCCCc
Q 029208 95 IDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALF------PKLCRTAEE---HPEIVFLKVNFDENKPMCKSLNVKV 165 (197)
Q Consensus 95 ~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~------p~l~~la~~---~~~v~~~~Vd~d~~~~l~~~~~v~~ 165 (197)
+.-.+..+|.+.+++ .+..+|+||.+-- .-+... ..+-+++++ -.++.|+.||..++..+++++|+..
T Consensus 36 Vi~LneKNfk~~lKk--yd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E 112 (383)
T PF01216_consen 36 VIDLNEKNFKRALKK--YDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEE 112 (383)
T ss_dssp CEEE-TTTHHHHHHH---SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--S
T ss_pred eEEcchhHHHHHHHh--hcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccc
Confidence 444567789999987 4788888998763 333332 333455543 3469999999999999999999999
Q ss_pred ccEEEEEeCCCceEEEeecCccHHHHHhhhc
Q 029208 166 LPYFHFYRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 166 ~Pt~~~~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
.+++.+|++|. +..|.|.++.+.+.+||.
T Consensus 113 ~~SiyVfkd~~--~IEydG~~saDtLVeFl~ 141 (383)
T PF01216_consen 113 EGSIYVFKDGE--VIEYDGERSADTLVEFLL 141 (383)
T ss_dssp TTEEEEEETTE--EEEE-S--SHHHHHHHHH
T ss_pred cCcEEEEECCc--EEEecCccCHHHHHHHHH
Confidence 99999999864 678889999999999973
No 173
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.81 E-value=8.8e-05 Score=50.43 Aligned_cols=79 Identities=18% Similarity=0.271 Sum_probs=61.3
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCc-eEEEeecCccHHHHHhh
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHG-QLESFSCSLAKVMLRIL 194 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~-~~~~~~g~~~~~~l~~f 194 (197)
++.|..+.|+-|..+...+.++....+ +.+-.||+++++++.++|+. .+|.+.+=..++. ......+..+.+++.+|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~~ 79 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRAW 79 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHHH
Confidence 677999999999999999998766554 89999999999999999995 7999665432111 13566678999999998
Q ss_pred hc
Q 029208 195 IQ 196 (197)
Q Consensus 195 I~ 196 (197)
|+
T Consensus 80 L~ 81 (81)
T PF05768_consen 80 LE 81 (81)
T ss_dssp HH
T ss_pred hC
Confidence 74
No 174
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.79 E-value=9e-05 Score=47.14 Aligned_cols=51 Identities=20% Similarity=0.351 Sum_probs=40.2
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHH----HHHHCCCCcccEEEE
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKP----MCKSLNVKVLPYFHF 171 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~----l~~~~~v~~~Pt~~~ 171 (197)
++.|+.+||++|++....|++. ++.+-.+|++++++ +.+..+..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 5679999999999999988443 47788888887744 334459999999986
No 175
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.73 E-value=0.00014 Score=49.09 Aligned_cols=54 Identities=13% Similarity=0.220 Sum_probs=40.9
Q ss_pred CCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCC---HHHHHHCCCCcccEEE
Q 029208 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN---KPMCKSLNVKVLPYFH 170 (197)
Q Consensus 112 ~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~---~~l~~~~~v~~~Pt~~ 170 (197)
++.-|+.|+.+||++|++....|++. ++.+-.+|++++ .++.+..+...+|.++
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~ 62 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVF 62 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEE
Confidence 34446779999999999999999753 566667777765 3455567889999995
No 176
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.71 E-value=0.00031 Score=64.15 Aligned_cols=98 Identities=13% Similarity=0.044 Sum_probs=79.0
Q ss_pred ChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEEEEe-CCCc
Q 029208 99 STQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYR-GAHG 177 (197)
Q Consensus 99 ~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~-~g~~ 177 (197)
..+++.+.+.+..+...++.|+.+.|..|.++...+++++..-+.+.+...|..++.+++++|++...|++.+++ ++..
T Consensus 353 ~~~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~ 432 (555)
T TIGR03143 353 LRQQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNY 432 (555)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcc
Confidence 344566667665556677788888999999999999999977777888889998999999999999999999996 4433
Q ss_pred eEEEeecCccHHHHHhhhc
Q 029208 178 QLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 178 ~~~~~~g~~~~~~l~~fI~ 196 (197)
.-.+|.|-..-+++..||.
T Consensus 433 ~~i~f~g~P~G~Ef~s~i~ 451 (555)
T TIGR03143 433 TGLKFHGVPSGHELNSFIL 451 (555)
T ss_pred cceEEEecCccHhHHHHHH
Confidence 4478888888777777763
No 177
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.69 E-value=0.00016 Score=46.68 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=38.5
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHH----HHHCCCCcccEEE
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPM----CKSLNVKVLPYFH 170 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l----~~~~~v~~~Pt~~ 170 (197)
++.|+++||++|+.+...+.+.. +.+..+|++.+.+. .+..+...+|+++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~ 55 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQIF 55 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 56789999999999999988764 66778888876543 3445677888774
No 178
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.67 E-value=0.00023 Score=56.14 Aligned_cols=82 Identities=20% Similarity=0.235 Sum_probs=66.3
Q ss_pred CCeEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEEE
Q 029208 92 PNMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHF 171 (197)
Q Consensus 92 ~~~~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~ 171 (197)
..+..|...+-..++-+...+-.|+|+.|...-+.|.-+...+++++.+|+.++|+++-.+..- ..|--...||+++
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cI---pNYPe~nlPTl~V 167 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCI---PNYPESNLPTLLV 167 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEeccccccc---CCCcccCCCeEEE
Confidence 4567777666555555555578999999999999999999999999999999999998765432 3566678999999
Q ss_pred EeCCC
Q 029208 172 YRGAH 176 (197)
Q Consensus 172 ~~~g~ 176 (197)
|..|.
T Consensus 168 Y~~G~ 172 (240)
T KOG3170|consen 168 YHHGA 172 (240)
T ss_pred eecch
Confidence 99885
No 179
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.61 E-value=0.00015 Score=52.03 Aligned_cols=84 Identities=14% Similarity=0.114 Sum_probs=60.3
Q ss_pred hHHHHHHHHhcCCCeEEEEEEcCCChhHH---hhHHHHHHHHHhCCC-eEEEEEECCCCHHHHHHCCCCcccEEEEEeCC
Q 029208 100 TQEFLEALSQAGDRLVIVEFYGTWCASCR---ALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGA 175 (197)
Q Consensus 100 ~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck---~~~p~l~~la~~~~~-v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g 175 (197)
.+++++.+.. +...+++|.. .|..+. ...=++-++.+.+++ +..+.++-+.+..+..+|++..+|+++|+++|
T Consensus 16 ~~~ld~~l~~--~~~~vlf~~g-Dp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R~g 92 (107)
T PF07449_consen 16 ADTLDAFLAA--PGDAVLFFAG-DPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVFFRDG 92 (107)
T ss_dssp CCCHHHHHHC--CSCEEEEESS--TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEEETT
T ss_pred hhhHHHHHhC--CCcEEEEECC-CCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEEEECC
Confidence 5567777765 4555555544 454444 444477799999987 67777776778899999999999999999987
Q ss_pred CceEEEeecCcc
Q 029208 176 HGQLESFSCSLA 187 (197)
Q Consensus 176 ~~~~~~~~g~~~ 187 (197)
+ .+..+.|-.+
T Consensus 93 ~-~lG~i~gi~d 103 (107)
T PF07449_consen 93 R-YLGAIEGIRD 103 (107)
T ss_dssp E-EEEEEESSST
T ss_pred E-EEEEecCeec
Confidence 6 7777777654
No 180
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.58 E-value=0.00029 Score=46.57 Aligned_cols=50 Identities=18% Similarity=0.314 Sum_probs=39.1
Q ss_pred EEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHC---CCCcccEEEE
Q 029208 117 VEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSL---NVKVLPYFHF 171 (197)
Q Consensus 117 v~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~---~v~~~Pt~~~ 171 (197)
..|..++|++|++....|++ .++.+-.+|++++++..+.+ |...+|++++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-----~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-----HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence 46788999999999999875 36778888888876554444 8889999754
No 181
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.53 E-value=0.00071 Score=48.82 Aligned_cols=93 Identities=16% Similarity=0.034 Sum_probs=66.9
Q ss_pred hHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHh---CCC-eEEEEEECCCCHHHHHHCCCCc--ccEEEEEe
Q 029208 100 TQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEE---HPE-IVFLKVNFDENKPMCKSLNVKV--LPYFHFYR 173 (197)
Q Consensus 100 ~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~---~~~-v~~~~Vd~d~~~~l~~~~~v~~--~Pt~~~~~ 173 (197)
.++....... +.+..+.|+ .-..-..+...+.+++++ +++ +.|+.+|.++.....+.+|+.. +|++.+..
T Consensus 6 ~e~~~~~~~~--~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~ 81 (111)
T cd03072 6 FENAEELTEE--GLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDS 81 (111)
T ss_pred cccHHHHhcC--CCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEc
Confidence 3444444433 444444555 223457888999999999 986 9999999999888999999997 99999997
Q ss_pred CCCceEEE-eecCccHHHHHhhhc
Q 029208 174 GAHGQLES-FSCSLAKVMLRILIQ 196 (197)
Q Consensus 174 ~g~~~~~~-~~g~~~~~~l~~fI~ 196 (197)
..+...-. +.+..+.+.+..|++
T Consensus 82 ~~~~~Ky~~~~~~~t~~~i~~Fv~ 105 (111)
T cd03072 82 FRHMYLFPDFEDVYVPGKLKQFVL 105 (111)
T ss_pred chhcCcCCCCccccCHHHHHHHHH
Confidence 64312222 456778888888874
No 182
>PHA03050 glutaredoxin; Provisional
Probab=97.52 E-value=0.00036 Score=50.18 Aligned_cols=54 Identities=11% Similarity=0.148 Sum_probs=38.5
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCC-C----HHHHHHCCCCcccEE
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDE-N----KPMCKSLNVKVLPYF 169 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~-~----~~l~~~~~v~~~Pt~ 169 (197)
++.|..+||++|++....|++..-+++.+..+.+|-.. . ..+.+..|-..+|++
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I 73 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRI 73 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE
Confidence 66699999999999999998875544445555554311 2 245566788899999
No 183
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.45 E-value=0.00078 Score=44.49 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=38.7
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHH----HHHHCCCCcccEE
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKP----MCKSLNVKVLPYF 169 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~----l~~~~~v~~~Pt~ 169 (197)
++.|+.+||+.|++....+++. ++.+-.+|++++++ +.+..+-..+|++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~~~vP~v 55 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGSSVVPQI 55 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence 4568899999999999998863 57777888887654 5556677889998
No 184
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.44 E-value=0.00073 Score=44.57 Aligned_cols=50 Identities=10% Similarity=0.234 Sum_probs=37.5
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHH----HHCCCC-cccEEE
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMC----KSLNVK-VLPYFH 170 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~----~~~~v~-~~Pt~~ 170 (197)
++.|..+||++|+.....+++. ++.+-.+|++.+++.. +..+.. ++|+++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 4678899999999999988763 5677778888765443 345666 899773
No 185
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.43 E-value=0.00093 Score=45.46 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=40.0
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHH---HHCCCCcccEEEE
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMC---KSLNVKVLPYFHF 171 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~---~~~~v~~~Pt~~~ 171 (197)
+..|..+||++|+.....|++ .++.|-.+|++++++.. +..+...+|++++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i 56 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA 56 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE
Confidence 556889999999999988855 36888889998876533 3457789999964
No 186
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.42 E-value=0.00048 Score=46.13 Aligned_cols=49 Identities=12% Similarity=0.371 Sum_probs=36.7
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHH----HHHCCCCcccEE
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPM----CKSLNVKVLPYF 169 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l----~~~~~v~~~Pt~ 169 (197)
|+.|+.+||++|++....+++. ++.+-.+|++.+++. .+..+...+|++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i 53 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI 53 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE
Confidence 3568899999999999999864 455666677766544 344578899997
No 187
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.40 E-value=0.0025 Score=48.01 Aligned_cols=79 Identities=16% Similarity=0.334 Sum_probs=59.4
Q ss_pred CCeEEEEEEcCCChhHHhhHHHHHHHHHhC--CC-eEEEEEECCCC----------------------------------
Q 029208 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEH--PE-IVFLKVNFDEN---------------------------------- 154 (197)
Q Consensus 112 ~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~--~~-v~~~~Vd~d~~---------------------------------- 154 (197)
.+.+|+.|+..-|++|+++.+.+.++.+++ ++ +.|+..++-..
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQEN 91 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCHS
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence 578899999999999999999999998887 43 77776664210
Q ss_pred ----------------------------------HHHHHHCCCCcccEEEEEeCCCceEEEeecCccHHHHHhhhc
Q 029208 155 ----------------------------------KPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 155 ----------------------------------~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
....++++|.++||+++ +|+ . +.+..+.+++..+|+
T Consensus 92 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~-~---~~~~~~~~~l~~~Id 161 (162)
T PF13462_consen 92 FENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGK-Y---VVGPYTIEELKELID 161 (162)
T ss_dssp TSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTC-E---EETTTSHHHHHHHHH
T ss_pred cchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCE-E---eCCCCCHHHHHHHHc
Confidence 11456779999999998 555 3 577888888888775
No 188
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.39 E-value=0.0053 Score=44.90 Aligned_cols=94 Identities=13% Similarity=0.268 Sum_probs=67.2
Q ss_pred ChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHH-H---hCCCeEEEEEECC-----CCHHHHHHCCC--Cccc
Q 029208 99 STQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTA-E---EHPEIVFLKVNFD-----ENKPMCKSLNV--KVLP 167 (197)
Q Consensus 99 ~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la-~---~~~~v~~~~Vd~d-----~~~~l~~~~~v--~~~P 167 (197)
+.-+|+..+.. .+.++|.|=... +--+-...|.+++ + .-+++-++.|-+. +|.+|+++|++ +.+|
T Consensus 10 D~~tFdKvi~k--f~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fP 85 (126)
T PF07912_consen 10 DELTFDKVIPK--FKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFP 85 (126)
T ss_dssp STTHHHHHGGG--SSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-S
T ss_pred cceehhheecc--CceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCC
Confidence 34588898876 589999996543 3334445666666 3 3456888888875 57899999999 5699
Q ss_pred EEEEEeCCCceEEEe--ecCccHHHHHhhhc
Q 029208 168 YFHFYRGAHGQLESF--SCSLAKVMLRILIQ 196 (197)
Q Consensus 168 t~~~~~~g~~~~~~~--~g~~~~~~l~~fI~ 196 (197)
.+.+|..+......| .|....+.++.|+.
T Consensus 86 v~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk 116 (126)
T PF07912_consen 86 VIYLFVGDKEEPVRYPFDGDVTADNLQRFVK 116 (126)
T ss_dssp EEEEEESSTTSEEEE-TCS-S-HHHHHHHHH
T ss_pred EEEEecCCCCCCccCCccCCccHHHHHHHHH
Confidence 999999777788888 78888999999873
No 189
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.37 E-value=0.0017 Score=46.95 Aligned_cols=71 Identities=7% Similarity=0.101 Sum_probs=56.2
Q ss_pred hhHHhhHHHHHHHHHhCC-C-eEEEEEECCCCHHHHHHCCCCc----ccEEEEEeCCCceEEEeecCc-cHHHHHhhhc
Q 029208 125 ASCRALFPKLCRTAEEHP-E-IVFLKVNFDENKPMCKSLNVKV----LPYFHFYRGAHGQLESFSCSL-AKVMLRILIQ 196 (197)
Q Consensus 125 ~~Ck~~~p~l~~la~~~~-~-v~~~~Vd~d~~~~l~~~~~v~~----~Pt~~~~~~g~~~~~~~~g~~-~~~~l~~fI~ 196 (197)
..-..+...+.++|++++ + +.|+.+|.++.....+.+|+.. +|++.++...+ ..-...+.. +.+.+..|++
T Consensus 31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~ 108 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKG-KKYVMEEEFSDVDALEEFLE 108 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCC-CccCCCcccCCHHHHHHHHH
Confidence 445678899999999999 4 9999999998888999999984 99999987533 112245566 8889988874
No 190
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.35 E-value=0.00096 Score=45.28 Aligned_cols=58 Identities=22% Similarity=0.375 Sum_probs=43.4
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCC-CeEEEEEEC--CCC------------------------------HHHHHHCC
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHP-EIVFLKVNF--DEN------------------------------KPMCKSLN 162 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~--d~~------------------------------~~l~~~~~ 162 (197)
|..|+.+.|++|..+.+.+.++.+..+ ++.+....+ ... ..+.+++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 467999999999999999999976555 355544433 221 23567889
Q ss_pred CCcccEEEEEe
Q 029208 163 VKVLPYFHFYR 173 (197)
Q Consensus 163 v~~~Pt~~~~~ 173 (197)
+.++||+++.+
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999999875
No 191
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.27 E-value=0.00086 Score=47.37 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=33.8
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCH---H----HHHHCCCCcccEE
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENK---P----MCKSLNVKVLPYF 169 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~---~----l~~~~~v~~~Pt~ 169 (197)
++.|..+||++|+++...|.+. ++.+-.+|+|+.+ + +.+..+...+|.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V 65 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV 65 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE
Confidence 5569999999999999988765 3434455555442 2 3334467899997
No 192
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.19 E-value=0.0022 Score=42.18 Aligned_cols=49 Identities=12% Similarity=0.225 Sum_probs=37.0
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHH---HHHHCCCCcccEE
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKP---MCKSLNVKVLPYF 169 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~---l~~~~~v~~~Pt~ 169 (197)
++.|..+||+.|.+....+.+. ++.+-.+|++++.. +.+..+...+|.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i 54 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQV 54 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeE
Confidence 5668999999999998888753 56667777766542 3444688999997
No 193
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.16 E-value=0.0083 Score=42.31 Aligned_cols=94 Identities=17% Similarity=0.255 Sum_probs=66.9
Q ss_pred eEEeCChHHHHHHHH-hcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhC-CCeEEEEEECCCCHHHHHHCCCCcccEEEE
Q 029208 94 MIDIHSTQEFLEALS-QAGDRLVIVEFYGTWCASCRALFPKLCRTAEEH-PEIVFLKVNFDENKPMCKSLNVKVLPYFHF 171 (197)
Q Consensus 94 ~~~i~~~~~~~~~l~-~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~-~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~ 171 (197)
+..|.+.++++..+. + +..++|-|+..--. .....|.++++.+ .++.|+... +.++.+.+++. .|++++
T Consensus 2 v~~i~~~~~~e~~~~~~--~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l 72 (102)
T cd03066 2 VEIINSERELQAFENIE--DDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDF 72 (102)
T ss_pred ceEcCCHHHHHHHhccc--CCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEE
Confidence 456788889999886 4 45666666655333 4566788888888 568885433 45777888765 699999
Q ss_pred EeCCCceEEEe-ecCccHHHHHhhhc
Q 029208 172 YRGAHGQLESF-SCSLAKVMLRILIQ 196 (197)
Q Consensus 172 ~~~g~~~~~~~-~g~~~~~~l~~fI~ 196 (197)
|+........| .|..+.+.|..||+
T Consensus 73 ~~~~~e~~~~y~~g~~~~~~l~~fi~ 98 (102)
T cd03066 73 YEPFMEEPVTIPDKPYSEEELVDFVE 98 (102)
T ss_pred eCCCCCCCcccCCCCCCHHHHHHHHH
Confidence 97633344568 77889999999986
No 194
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.09 E-value=0.0043 Score=43.59 Aligned_cols=60 Identities=17% Similarity=0.142 Sum_probs=40.7
Q ss_pred HHHHHHhcCCCeEEEEEE----cCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHH----HHHCCCCcccEEE
Q 029208 103 FLEALSQAGDRLVIVEFY----GTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPM----CKSLNVKVLPYFH 170 (197)
Q Consensus 103 ~~~~l~~~~~k~vlv~F~----a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l----~~~~~v~~~Pt~~ 170 (197)
..+.+.+ ..|+|+-. .+||++|++....|.+. ++.+..+|+++++++ .+..|-..+|.++
T Consensus 5 v~~~i~~---~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf 72 (97)
T TIGR00365 5 IKEQIKE---NPVVLYMKGTPQFPQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY 72 (97)
T ss_pred HHHHhcc---CCEEEEEccCCCCCCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence 4444433 45666544 28999999999998775 456777888776543 3445677889873
No 195
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.02 E-value=0.0046 Score=47.49 Aligned_cols=64 Identities=19% Similarity=0.259 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHhCC-CeEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCceEEEeecC-ccHHHHHhhhc
Q 029208 129 ALFPKLCRTAEEHP-EIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCS-LAKVMLRILIQ 196 (197)
Q Consensus 129 ~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~-~~~~~l~~fI~ 196 (197)
.....+.++++.+. ++.|+.+. +.++++++++.. |++++|+++.+....|.|. .+.+.+..||.
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~ 72 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIK 72 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHH
Confidence 34567888999887 58999887 778999999999 9999999977778899998 79999999985
No 196
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.94 E-value=0.012 Score=41.70 Aligned_cols=92 Identities=16% Similarity=0.288 Sum_probs=64.8
Q ss_pred EEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhC-CCeEEEEEECCCCHHHHHHCCCCcccEEEEEe
Q 029208 95 IDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEH-PEIVFLKVNFDENKPMCKSLNVKVLPYFHFYR 173 (197)
Q Consensus 95 ~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~-~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~ 173 (197)
..+.+.+++++.+.. ++.++|-|+..--. .....+.++++.+ .++.|+... +..+.+++++ .|++++|+
T Consensus 3 ~~i~s~~~l~~f~~~--~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~~ 72 (104)
T cd03069 3 VELRTEAEFEKFLSD--DDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLFR 72 (104)
T ss_pred cccCCHHHHHHHhcc--CCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEEe
Confidence 456778888887754 56666666655333 4667788888888 468886544 4577788988 68888884
Q ss_pred CC------CceEEEeecCccHHHHHhhhc
Q 029208 174 GA------HGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 174 ~g------~~~~~~~~g~~~~~~l~~fI~ 196 (197)
+. ......|.|..+.+.|..||+
T Consensus 73 p~~~~~k~de~~~~y~g~~~~~~l~~fi~ 101 (104)
T cd03069 73 PPRLSNKFEDSSVKFDGDLDSSKIKKFIR 101 (104)
T ss_pred chhhhcccCcccccccCcCCHHHHHHHHH
Confidence 41 223346889888999999986
No 197
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0065 Score=51.11 Aligned_cols=105 Identities=17% Similarity=0.335 Sum_probs=74.2
Q ss_pred CCCeEEeCChHHHHHHHHh-cCCCeEEEEEEcC----CChhHHhhHHHHHHHHHhC----C-----CeEEEEEECCCCHH
Q 029208 91 APNMIDIHSTQEFLEALSQ-AGDRLVIVEFYGT----WCASCRALFPKLCRTAEEH----P-----EIVFLKVNFDENKP 156 (197)
Q Consensus 91 ~~~~~~i~~~~~~~~~l~~-~~~k~vlv~F~a~----wC~~Ck~~~p~l~~la~~~----~-----~v~~~~Vd~d~~~~ 156 (197)
...++..+ .+.|...+.. .++-.+++.|.|. .|.-|+.+..++.-+++.+ + .+-|..||.++.++
T Consensus 39 ~~~VI~~n-~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~ 117 (331)
T KOG2603|consen 39 ESGVIRMN-DDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ 117 (331)
T ss_pred CCCeEEec-CcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH
Confidence 34555554 4567776653 2345678888874 7999999999999998753 1 16799999999999
Q ss_pred HHHHCCCCcccEEEEEeCCCceEEEe------ecCccHHHHHhhhc
Q 029208 157 MCKSLNVKVLPYFHFYRGAHGQLESF------SCSLAKVMLRILIQ 196 (197)
Q Consensus 157 l~~~~~v~~~Pt~~~~~~g~~~~~~~------~g~~~~~~l~~fI~ 196 (197)
+-+++++...|++++|.+..+...+- .-....|++.+|++
T Consensus 118 ~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~ 163 (331)
T KOG2603|consen 118 VFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVA 163 (331)
T ss_pred HHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHH
Confidence 99999999999999997654332211 11122566666653
No 198
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0046 Score=41.93 Aligned_cols=51 Identities=16% Similarity=0.347 Sum_probs=36.6
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCH-----HHHHHC-CCCcccEEEE
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENK-----PMCKSL-NVKVLPYFHF 171 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~-----~l~~~~-~v~~~Pt~~~ 171 (197)
++.|..++|++|++....+.+. ++.+..+|++.+. +..++. |...+|++++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-----GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-----CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 5668899999999999888832 4666666665544 334444 7899998764
No 199
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.77 E-value=0.0052 Score=42.44 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=37.3
Q ss_pred CeEEEEEEc----CCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHH----HHHCCCCcccEE
Q 029208 113 RLVIVEFYG----TWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPM----CKSLNVKVLPYF 169 (197)
Q Consensus 113 k~vlv~F~a----~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l----~~~~~v~~~Pt~ 169 (197)
.+|+|+-.. +||++|+.....|.+.. +.+-.+|++++.++ .+..+-..+|++
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~-----i~y~~idv~~~~~~~~~l~~~~g~~tvP~v 67 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLG-----VDFGTFDILEDEEVRQGLKEYSNWPTFPQL 67 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcC-----CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE
Confidence 456664433 79999999999888763 56777777766543 445677899997
No 200
>PRK10638 glutaredoxin 3; Provisional
Probab=96.66 E-value=0.01 Score=40.10 Aligned_cols=50 Identities=16% Similarity=0.284 Sum_probs=37.3
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHH----HHHHCCCCcccEEE
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKP----MCKSLNVKVLPYFH 170 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~----l~~~~~v~~~Pt~~ 170 (197)
++.|..+||++|++....+++. ++.+..+|++++.+ +.+..+...+|+++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~ 57 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIF 57 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 5567889999999999988864 45666778876653 34555778899873
No 201
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.025 Score=43.39 Aligned_cols=76 Identities=16% Similarity=0.137 Sum_probs=57.7
Q ss_pred HHhcCCCeEEEEEE-cCCChhHHhhHHHHHHHHHhCC--CeEEEEEECCC---------------------CHHHHHHCC
Q 029208 107 LSQAGDRLVIVEFY-GTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE---------------------NKPMCKSLN 162 (197)
Q Consensus 107 l~~~~~k~vlv~F~-a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~---------------------~~~l~~~~~ 162 (197)
+.+..+++||++|| .++++-|-...-.|.+...++. +..++.|..|. +.++++.||
T Consensus 25 Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~yg 104 (157)
T COG1225 25 LSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYG 104 (157)
T ss_pred hHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhC
Confidence 55667889999999 7899999999999998888776 47777777653 456888888
Q ss_pred CCc------------ccEEEEEeCCCceEEEe
Q 029208 163 VKV------------LPYFHFYRGAHGQLESF 182 (197)
Q Consensus 163 v~~------------~Pt~~~~~~g~~~~~~~ 182 (197)
+.. .++.+++++++.....+
T Consensus 105 v~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 105 VWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred cccccccCccccccccceEEEECCCCeEEEEe
Confidence 743 56777887766555555
No 202
>PRK10824 glutaredoxin-4; Provisional
Probab=96.28 E-value=0.026 Score=41.05 Aligned_cols=61 Identities=13% Similarity=0.193 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCCeEEEEEEc----CCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHH----HCCCCcccEEE
Q 029208 102 EFLEALSQAGDRLVIVEFYG----TWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCK----SLNVKVLPYFH 170 (197)
Q Consensus 102 ~~~~~l~~~~~k~vlv~F~a----~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~----~~~v~~~Pt~~ 170 (197)
..++.+++ .+|+|+-.+ +||++|++....|.+.. +.+..+|++++.++.+ .-+-..+|.++
T Consensus 7 ~v~~~I~~---~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~-----i~~~~idi~~d~~~~~~l~~~sg~~TVPQIF 75 (115)
T PRK10824 7 KIQRQIAE---NPILLYMKGSPKLPSCGFSAQAVQALSACG-----ERFAYVDILQNPDIRAELPKYANWPTFPQLW 75 (115)
T ss_pred HHHHHHhc---CCEEEEECCCCCCCCCchHHHHHHHHHHcC-----CCceEEEecCCHHHHHHHHHHhCCCCCCeEE
Confidence 34445543 455554443 69999999999888763 4444566666655433 33445566543
No 203
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.0085 Score=55.28 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=60.1
Q ss_pred ChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHH---HHHHhCC-CeEEEEEECCCCHHHHHHCC--------CCcc
Q 029208 99 STQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLC---RTAEEHP-EIVFLKVNFDENKPMCKSLN--------VKVL 166 (197)
Q Consensus 99 ~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~---~la~~~~-~v~~~~Vd~d~~~~l~~~~~--------v~~~ 166 (197)
+.+.|..+-.+ +||+++.+..+||..|+.|..+-. ++++-.+ +++-+|||-++-+++-+.|. --|+
T Consensus 32 ~~eAf~~A~~e--dkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGW 109 (667)
T COG1331 32 GEEAFAKAKEE--DKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGW 109 (667)
T ss_pred CHHHHHHHHHh--CCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCC
Confidence 36778777655 899999999999999999986432 4554433 58899999998877655543 5589
Q ss_pred cEEEEEeCCCceE
Q 029208 167 PYFHFYRGAHGQL 179 (197)
Q Consensus 167 Pt~~~~~~g~~~~ 179 (197)
|-.+|..++++..
T Consensus 110 PLtVfLTPd~kPF 122 (667)
T COG1331 110 PLTVFLTPDGKPF 122 (667)
T ss_pred ceeEEECCCCcee
Confidence 9999998877543
No 204
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.041 Score=39.30 Aligned_cols=63 Identities=17% Similarity=0.221 Sum_probs=40.0
Q ss_pred HHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCH-HH----HHHCCCCcccEEEE
Q 029208 102 EFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENK-PM----CKSLNVKVLPYFHF 171 (197)
Q Consensus 102 ~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~-~l----~~~~~v~~~Pt~~~ 171 (197)
.+.+++.+ .+| |.|..+||+.|+.+...|.+ .-.+..++.+|-+.+. ++ .+.-+-+.+|.+++
T Consensus 6 ~v~~~i~~---~~V-VifSKs~C~~c~~~k~ll~~---~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 6 KVRKMISE---NPV-VIFSKSSCPYCHRAKELLSD---LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred HHHHHhhc---CCE-EEEECCcCchHHHHHHHHHh---CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 45555544 344 44999999999998877777 1124677777776543 33 23334567887654
No 205
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.13 E-value=0.078 Score=37.57 Aligned_cols=99 Identities=18% Similarity=0.309 Sum_probs=71.4
Q ss_pred eEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC-eEEEEEECCC--CHHHHHHCCCC----cc
Q 029208 94 MIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDE--NKPMCKSLNVK----VL 166 (197)
Q Consensus 94 ~~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~d~--~~~l~~~~~v~----~~ 166 (197)
+..|.+..+|...+.. ...|+|.|..+ -..-......+.++++...+ -.++.|||.+ ...||+++.|. --
T Consensus 3 ie~i~d~KdfKKLLRT--r~NVLvLy~ks-~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~ 79 (112)
T cd03067 3 IEDISDHKDFKKLLRT--RNNVLVLYSKS-AKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPK 79 (112)
T ss_pred cccccchHHHHHHHhh--cCcEEEEEecc-hhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCC
Confidence 4567888999999976 45677766654 34444555678888888887 6788899986 67899999998 55
Q ss_pred cE-EEEEeCCCceEEEeecCccHHHHHhhhc
Q 029208 167 PY-FHFYRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 167 Pt-~~~~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
|. +.-|++|. ....|.-......+..|++
T Consensus 80 ~~~LkHYKdG~-fHkdYdR~~t~kSmv~Flr 109 (112)
T cd03067 80 PVELKHYKDGD-FHTEYNRQLTFKSMVAFLR 109 (112)
T ss_pred cchhhcccCCC-ccccccchhhHHHHHHHhh
Confidence 54 45677765 6677776667777777653
No 206
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=96.09 E-value=0.11 Score=36.29 Aligned_cols=83 Identities=18% Similarity=0.116 Sum_probs=57.9
Q ss_pred HHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCceEE
Q 029208 101 QEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLE 180 (197)
Q Consensus 101 ~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~ 180 (197)
+++...+++..+...++.|..+. ..|..+...+++++.--+.+.+-..+.++ ..|++.+..+++..-.
T Consensus 8 ~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~~~~gI 75 (94)
T cd02974 8 QQLKAYLERLENPVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPGEDTGI 75 (94)
T ss_pred HHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCCCcccE
Confidence 45555666554455555565555 99999999999999877766665433221 4799999977644457
Q ss_pred EeecCccHHHHHhhh
Q 029208 181 SFSCSLAKVMLRILI 195 (197)
Q Consensus 181 ~~~g~~~~~~l~~fI 195 (197)
+|.|-..-++...||
T Consensus 76 rF~GiP~GhEf~Sli 90 (94)
T cd02974 76 RFAGIPMGHEFTSLV 90 (94)
T ss_pred EEEecCCchhHHHHH
Confidence 888888877777766
No 207
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=95.81 E-value=0.027 Score=49.69 Aligned_cols=51 Identities=14% Similarity=0.328 Sum_probs=38.7
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHH---HHHH---------CCCCcccEEEE
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKP---MCKS---------LNVKVLPYFHF 171 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~---l~~~---------~~v~~~Pt~~~ 171 (197)
|+.|..+||++|++.+..+.+. ++.+-.+|+++++. +.++ .|.+.+|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 6679999999999999888774 57777888886653 2222 36788999955
No 208
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=95.69 E-value=0.061 Score=41.87 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=21.6
Q ss_pred EEEcCCChhHHhhHHHHHHHHHhCCC
Q 029208 118 EFYGTWCASCRALFPKLCRTAEEHPE 143 (197)
Q Consensus 118 ~F~a~wC~~Ck~~~p~l~~la~~~~~ 143 (197)
.|..|.|+.|-.+.|.+.++..++++
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~ 27 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN 27 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC
Confidence 58899999999999999999999985
No 209
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=95.58 E-value=0.024 Score=43.11 Aligned_cols=41 Identities=20% Similarity=0.435 Sum_probs=30.3
Q ss_pred CCeEEE-EEEcCCChhHHhh-HHHHHHHHHhCC--Ce-EEEEEECC
Q 029208 112 DRLVIV-EFYGTWCASCRAL-FPKLCRTAEEHP--EI-VFLKVNFD 152 (197)
Q Consensus 112 ~k~vlv-~F~a~wC~~Ck~~-~p~l~~la~~~~--~v-~~~~Vd~d 152 (197)
+++++| .|.+.||+.|-.. .+.+.+..+++. ++ .++.|..|
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D 74 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN 74 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC
Confidence 444444 4558999999998 999998888775 45 47766655
No 210
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=95.48 E-value=0.03 Score=42.78 Aligned_cols=36 Identities=22% Similarity=0.478 Sum_probs=31.2
Q ss_pred CCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC-eEEE
Q 029208 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFL 147 (197)
Q Consensus 112 ~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~-v~~~ 147 (197)
+++.|+.|+...|++|+.+.+.+.++.+++++ +.+.
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~ 51 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE 51 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence 68899999999999999999999999988874 4443
No 211
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=95.38 E-value=0.23 Score=38.37 Aligned_cols=35 Identities=20% Similarity=0.101 Sum_probs=28.8
Q ss_pred HHHHCCCCcccEEEEEeCCCceEEEeecCccHHHHHhhhc
Q 029208 157 MCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 157 l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
.+.++||.|+||+++ +|+ ..+.|..+.+.++..||
T Consensus 159 ~a~~~gv~GvP~~vv--~g~---~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 159 EARQLGVFGVPTFVV--NGK---YRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHTTCSSSSEEEE--TTT---EEEESCSSHHHHHHHH-
T ss_pred HHHHcCCcccCEEEE--CCE---EEEECCCCHHHHHHHhC
Confidence 567889999999999 444 77889999999988775
No 212
>PTZ00062 glutaredoxin; Provisional
Probab=95.35 E-value=0.11 Score=41.53 Aligned_cols=54 Identities=13% Similarity=0.170 Sum_probs=36.0
Q ss_pred CCeEEEEEE----cCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHH----HCCCCcccEEE
Q 029208 112 DRLVIVEFY----GTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCK----SLNVKVLPYFH 170 (197)
Q Consensus 112 ~k~vlv~F~----a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~----~~~v~~~Pt~~ 170 (197)
..+|+|+-. .|||+.|++....|.+. ++.+..+|+++++++.+ ..+-..+|.++
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVf 173 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNWPTYPQLY 173 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEE
Confidence 355665444 27999999998888864 46677888887765433 33455666654
No 213
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=94.59 E-value=0.053 Score=43.17 Aligned_cols=40 Identities=15% Similarity=0.351 Sum_probs=32.1
Q ss_pred CCeEEEEEEcCCChhHHhhHHHH---HHHHHhCC-CeEEEEEEC
Q 029208 112 DRLVIVEFYGTWCASCRALFPKL---CRTAEEHP-EIVFLKVNF 151 (197)
Q Consensus 112 ~k~vlv~F~a~wC~~Ck~~~p~l---~~la~~~~-~v~~~~Vd~ 151 (197)
+++.|++|+.-.|+||..+.+.+ ..+.+.++ ++.++++.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 46779999999999999999976 78888887 466665543
No 214
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.18 Score=40.78 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=25.9
Q ss_pred HHHHHCCCCcccEEEEEeCCCceEEEeecCccHHHHHhhhc
Q 029208 156 PMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 156 ~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
.+++++|+.++||+++-.. .+.|..+.+++.+.|.
T Consensus 206 ~~a~~~gv~gTPt~~v~~~------~~~g~~~~~~l~~~i~ 240 (244)
T COG1651 206 KLAQQLGVNGTPTFIVNGK------LVPGLPDLDELKAIID 240 (244)
T ss_pred HHHHhcCCCcCCeEEECCe------eecCCCCHHHHHHHHH
Confidence 3667889999999988642 5777777777776653
No 215
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.05 E-value=0.39 Score=43.54 Aligned_cols=85 Identities=14% Similarity=0.023 Sum_probs=60.9
Q ss_pred hHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCceE
Q 029208 100 TQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQL 179 (197)
Q Consensus 100 ~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~ 179 (197)
.+++.+.+.+. .++|-+.++.+-|..|.++...++++++.-+.+.+-..+.+ ...|++.+..+|+..-
T Consensus 7 ~~~l~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~ 74 (517)
T PRK15317 7 KTQLKQYLELL-ERPIELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD-----------VRKPSFSITRPGEDTG 74 (517)
T ss_pred HHHHHHHHHhC-CCCEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC-----------CCCCEEEEEcCCccce
Confidence 34555666654 45565656666899999999999999988777666442211 3479999998766556
Q ss_pred EEeecCccHHHHHhhhc
Q 029208 180 ESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 180 ~~~~g~~~~~~l~~fI~ 196 (197)
.+|.|-..-+++..||.
T Consensus 75 i~f~g~P~g~Ef~s~i~ 91 (517)
T PRK15317 75 VRFAGIPMGHEFTSLVL 91 (517)
T ss_pred EEEEecCccHHHHHHHH
Confidence 78999888888877763
No 216
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=93.95 E-value=1.6 Score=31.03 Aligned_cols=95 Identities=13% Similarity=0.170 Sum_probs=62.4
Q ss_pred eEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhC-CCeEEEEEECCCCHHHHHHCCCCcccEEEEE
Q 029208 94 MIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEH-PEIVFLKVNFDENKPMCKSLNVKVLPYFHFY 172 (197)
Q Consensus 94 ~~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~-~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~ 172 (197)
+..|.+.++++..+.+ .++.++|-|+..--. .....+.++|+.+ .++.|+... +..+.+++++. .|.+++|
T Consensus 2 v~~i~s~~ele~f~~~-~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~-~~~vvl~ 73 (107)
T cd03068 2 SKQLQTLKQVQEFLRD-GDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVS-PGQLVVF 73 (107)
T ss_pred ceEcCCHHHHHHHHhc-CCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCC-CCceEEE
Confidence 4567888888887765 225666666655333 4566788899888 468886544 45777888876 4667777
Q ss_pred eCC------CceEEEeecC-ccHHH-HHhhhc
Q 029208 173 RGA------HGQLESFSCS-LAKVM-LRILIQ 196 (197)
Q Consensus 173 ~~g------~~~~~~~~g~-~~~~~-l~~fI~ 196 (197)
++. ..-...|.|. ...+. |..||+
T Consensus 74 rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~ 105 (107)
T cd03068 74 QPEKFQSKYEPKSHVLNKKDSTSEDELKDFFK 105 (107)
T ss_pred CcHHHhhhcCcceeeeeccccchHHHHHHHHh
Confidence 443 2223566766 46555 888875
No 217
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=93.06 E-value=0.59 Score=32.22 Aligned_cols=75 Identities=8% Similarity=0.048 Sum_probs=59.0
Q ss_pred CeEEEEEEcCCChhHHhhHHHHHHHHHhC-CC-eEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCceEEEeecCccHH
Q 029208 113 RLVIVEFYGTWCASCRALFPKLCRTAEEH-PE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKV 189 (197)
Q Consensus 113 k~vlv~F~a~wC~~Ck~~~p~l~~la~~~-~~-v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~~~~~ 189 (197)
..++=.|.+..-+..+.....+.++.+++ ++ +.+=-||+.+++++++.++|-.+||++-.-+. ...++.|.++..
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~--P~rriiGdls~~ 79 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILPP--PVRKIIGDLSDR 79 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCC--Ccceeeccccch
Confidence 34555666777888999888999887764 44 77778999999999999999999998866543 567888887653
No 218
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=92.95 E-value=0.48 Score=35.91 Aligned_cols=51 Identities=14% Similarity=0.180 Sum_probs=35.3
Q ss_pred EEEEEcC------CChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHH----HHHHCCC----CcccEEEE
Q 029208 116 IVEFYGT------WCASCRALFPKLCRTAEEHPEIVFLKVNFDENKP----MCKSLNV----KVLPYFHF 171 (197)
Q Consensus 116 lv~F~a~------wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~----l~~~~~v----~~~Pt~~~ 171 (197)
|+.|.++ +|++|+.+...|++. ++.|-.+|++.+.+ +.+..+- ..+|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 3445666 899999999888765 47788899987654 3344443 56776653
No 219
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=92.90 E-value=0.59 Score=31.04 Aligned_cols=60 Identities=10% Similarity=0.043 Sum_probs=47.7
Q ss_pred EEEEEEcCCChhHHhhHHHHHHHHHhCCC--eEEEEEECCCCHHHHHHCCCCcccEEEEEeC
Q 029208 115 VIVEFYGTWCASCRALFPKLCRTAEEHPE--IVFLKVNFDENKPMCKSLNVKVLPYFHFYRG 174 (197)
Q Consensus 115 vlv~F~a~wC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~ 174 (197)
.+..|-+..-+..+.....+.++.+++.+ +.+=-||+.+++++++.++|-.+||++-..+
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~P 64 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKVLP 64 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhcCC
Confidence 34445555558888888888888887643 8888899999999999999999999875544
No 220
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=92.75 E-value=0.95 Score=41.01 Aligned_cols=86 Identities=14% Similarity=0.082 Sum_probs=60.3
Q ss_pred hHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCceE
Q 029208 100 TQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQL 179 (197)
Q Consensus 100 ~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~ 179 (197)
.+++.+.+.+. .++|-+.++.+-|..|.++...++++++.-+.+.+..-+.+. ...|++.+..+|+..-
T Consensus 7 ~~~l~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~ 75 (515)
T TIGR03140 7 LAQLKSYLASL-ENPVTLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTADT----------LRKPSFTILRDGADTG 75 (515)
T ss_pred HHHHHHHHHhc-CCCEEEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecCCc----------CCCCeEEEecCCcccc
Confidence 34556666654 455555555557999999999999999887777765433221 3469999987765455
Q ss_pred EEeecCccHHHHHhhhc
Q 029208 180 ESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 180 ~~~~g~~~~~~l~~fI~ 196 (197)
.+|.|...-+++..||.
T Consensus 76 i~f~g~P~g~Ef~s~i~ 92 (515)
T TIGR03140 76 IRFAGIPGGHEFTSLVL 92 (515)
T ss_pred eEEEecCCcHHHHHHHH
Confidence 78888888777777763
No 221
>PRK09301 circadian clock protein KaiB; Provisional
Probab=92.67 E-value=0.66 Score=32.95 Aligned_cols=75 Identities=7% Similarity=0.053 Sum_probs=60.2
Q ss_pred CCeEEEEEEcCCChhHHhhHHHHHHHHHhC-CC-eEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCceEEEeecCccH
Q 029208 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEH-PE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAK 188 (197)
Q Consensus 112 ~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~-~~-v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~~~~ 188 (197)
+..++=.|.+..-+..+.....+.++.+++ ++ +.+=-||+.+++++++.++|-.+||++-.-+. ...++.|.++.
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~--P~rriiGDlsd 81 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILPP--PVRKIIGDLSD 81 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCC--Ccceeeccccc
Confidence 456676777888889999999999887764 44 77788999999999999999999998765443 56788888664
No 222
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=91.90 E-value=2.5 Score=30.40 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=39.9
Q ss_pred hHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEEEEeC
Q 029208 100 TQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRG 174 (197)
Q Consensus 100 ~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~ 174 (197)
.+.+.+.+.+..+.-+.+.|=.---+.=+.....+.++.++.+.. .++.-++.+-++|+|+.+||+++-++
T Consensus 10 ~~~L~~l~~~a~~~~~~~V~RG~~~g~~~~t~~~~~~l~~~~~~~----~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 10 DASLRNLLKQAERAGVVVVFRGFPDGSFKPTAKAIQELLRKDDPC----PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHHHhCCcEEEEECCCCCCHHHHHHHHHHHhhccCCC----cceeEChhHHhhCCceEcCEEEEEcC
Confidence 345555665433333333344433333334444444554444333 22223488899999999999999987
No 223
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=91.05 E-value=0.29 Score=39.96 Aligned_cols=59 Identities=19% Similarity=0.357 Sum_probs=43.8
Q ss_pred CCCeEEeCChH--HHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC-eEEEEEEC
Q 029208 91 APNMIDIHSTQ--EFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNF 151 (197)
Q Consensus 91 ~~~~~~i~~~~--~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~-v~~~~Vd~ 151 (197)
+..++++.+.. .+.+..+ .++|.|++|.+-.|++-+.-.+.+++++++|.+ +.|+-|-+
T Consensus 81 ns~vv~l~g~~~~~ildf~~--g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI 142 (237)
T PF00837_consen 81 NSPVVTLDGQRSCRILDFAK--GNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYI 142 (237)
T ss_pred CCceEeeCCCcceeHHHhcc--CCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhH
Confidence 34566665544 3334333 389999999999999999999999999999987 45665443
No 224
>PHA03075 glutaredoxin-like protein; Provisional
Probab=90.84 E-value=0.46 Score=34.42 Aligned_cols=30 Identities=17% Similarity=0.361 Sum_probs=26.8
Q ss_pred CeEEEEEEcCCChhHHhhHHHHHHHHHhCC
Q 029208 113 RLVIVEFYGTWCASCRALFPKLCRTAEEHP 142 (197)
Q Consensus 113 k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~ 142 (197)
|.++|.|..|-|+-|+.....+.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568999999999999999999988888765
No 225
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=89.58 E-value=0.13 Score=43.38 Aligned_cols=82 Identities=17% Similarity=0.226 Sum_probs=61.0
Q ss_pred CCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEEC-CCCHHHHHHCCCCcccEEEEEeCCCceEEEeecCccHH
Q 029208 111 GDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNF-DENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKV 189 (197)
Q Consensus 111 ~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~-d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~~~~~ 189 (197)
+..++=+.||+.||+--+...|.+.-....|+.+....++- ...+.+..+|++.+.|++.+.... -...+.|..+-.
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t--~~~~~~~~r~l~ 152 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQT--CPASYRGERDLA 152 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceeeccc--cchhhcccccHH
Confidence 35688899999999999999999998887777554444321 123567899999999999998643 346677777666
Q ss_pred HHHhh
Q 029208 190 MLRIL 194 (197)
Q Consensus 190 ~l~~f 194 (197)
.+.+|
T Consensus 153 sLv~f 157 (319)
T KOG2640|consen 153 SLVNF 157 (319)
T ss_pred HHHHH
Confidence 66555
No 226
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=88.71 E-value=0.54 Score=33.06 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=23.6
Q ss_pred EEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCC
Q 029208 117 VEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDE 153 (197)
Q Consensus 117 v~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~ 153 (197)
..|+.++|+.|++....+++. ++.|-.+|+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~ 33 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLK 33 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCCcEEEeecc
Confidence 468899999999998777764 45555666644
No 227
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=87.93 E-value=2.1 Score=35.34 Aligned_cols=58 Identities=14% Similarity=-0.007 Sum_probs=40.9
Q ss_pred CCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEEEEeC
Q 029208 111 GDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRG 174 (197)
Q Consensus 111 ~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~ 174 (197)
.+|+.+++..+.||+.|....=.+-....+|.++.+.....+.. -.--.+||+.|..-
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~~~~S~~~------d~~pn~Ptl~F~~~ 114 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLEYHYSDPY------DNYPNTPTLIFNNY 114 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeEEeecCcc------cCCCCCCeEEEecC
Confidence 58999999999999999988766666667887773333222221 12357899998864
No 228
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=87.30 E-value=2.2 Score=27.34 Aligned_cols=51 Identities=10% Similarity=0.068 Sum_probs=34.5
Q ss_pred EEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCC-CHHHHHHCCCCcccEEE
Q 029208 117 VEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDE-NKPMCKSLNVKVLPYFH 170 (197)
Q Consensus 117 v~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~-~~~l~~~~~v~~~Pt~~ 170 (197)
+.|+.+||+.|++..-.+++..- .+.++.+|... .+++.+......+|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl---~~e~~~v~~~~~~~~~~~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI---TVELREVELKNKPAEMLAASPKGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC---CcEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence 34778999999988776665432 25566666543 34565655677899995
No 229
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=87.03 E-value=1.4 Score=31.73 Aligned_cols=33 Identities=15% Similarity=0.280 Sum_probs=25.2
Q ss_pred EEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCC
Q 029208 117 VEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN 154 (197)
Q Consensus 117 v~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~ 154 (197)
..|+.++|+.|++....+++- ++.+-.+|+.++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~ 34 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN-----GIEYQFIDIGED 34 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCceEEEecCCC
Confidence 357899999999999887773 566677777654
No 230
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=86.46 E-value=5.2 Score=29.67 Aligned_cols=36 Identities=8% Similarity=0.208 Sum_probs=27.4
Q ss_pred CHHHHHHCCCCcccEEEEEeCCC----------ceEEEeecCccHH
Q 029208 154 NKPMCKSLNVKVLPYFHFYRGAH----------GQLESFSCSLAKV 189 (197)
Q Consensus 154 ~~~l~~~~~v~~~Pt~~~~~~g~----------~~~~~~~g~~~~~ 189 (197)
++.+-++|+|+.+|++++.+++. .......|+.+-+
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~ 105 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLK 105 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHH
Confidence 48899999999999999998763 1345666766543
No 231
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=84.15 E-value=1.7 Score=31.06 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=32.1
Q ss_pred EEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCH----HHHHHCCCCcccEEEEEe
Q 029208 117 VEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENK----PMCKSLNVKVLPYFHFYR 173 (197)
Q Consensus 117 v~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~----~l~~~~~v~~~Pt~~~~~ 173 (197)
..|+.++|+.|++....+++- ++.|-.+|+.+++ ++.+-.+..+.|..-+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~ 57 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFN 57 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHh
Confidence 458899999999998877763 5666666665432 333333333445444444
No 232
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=84.08 E-value=1.3 Score=27.25 Aligned_cols=51 Identities=10% Similarity=0.035 Sum_probs=32.8
Q ss_pred EEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCH--HHHHHCCCCcccEEEE
Q 029208 118 EFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENK--PMCKSLNVKVLPYFHF 171 (197)
Q Consensus 118 ~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~--~l~~~~~v~~~Pt~~~ 171 (197)
.|+.++|+.|++..-.+....-. +....++.+... ++.+...-..+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP---YELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 47788999999888777665322 344455543322 2455667778997753
No 233
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=83.67 E-value=1.6 Score=30.93 Aligned_cols=32 Identities=6% Similarity=0.066 Sum_probs=23.1
Q ss_pred EEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCC
Q 029208 117 VEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDE 153 (197)
Q Consensus 117 v~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~ 153 (197)
..|+.++|+.|++....+++- ++.|-.+|+.+
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~ 33 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRK 33 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCCeEEEeccc
Confidence 468899999999988777654 45555555544
No 234
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=83.61 E-value=2.2 Score=31.52 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=23.7
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCC
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN 154 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~ 154 (197)
+..|+.++|+.|++....+++- ++.|-.+|+.++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeeccCC
Confidence 4568899999999988776654 455555665443
No 235
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=82.98 E-value=2.9 Score=32.25 Aligned_cols=45 Identities=20% Similarity=0.391 Sum_probs=32.9
Q ss_pred hcCCCeEEEEEEcCCC-hhHHhhHHHHHHHHHh----CCCeEEEEEECCC
Q 029208 109 QAGDRLVIVEFYGTWC-ASCRALFPKLCRTAEE----HPEIVFLKVNFDE 153 (197)
Q Consensus 109 ~~~~k~vlv~F~a~wC-~~Ck~~~p~l~~la~~----~~~v~~~~Vd~d~ 153 (197)
+.++|+++|.|.-+.| ..|-.+...+.++.++ ..++.++-|.+|.
T Consensus 49 ~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP 98 (174)
T PF02630_consen 49 DLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP 98 (174)
T ss_dssp GGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred HhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence 3468999999999999 6788887777766554 2357888777774
No 236
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=81.55 E-value=4.5 Score=30.39 Aligned_cols=72 Identities=10% Similarity=0.101 Sum_probs=50.6
Q ss_pred eEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCC----cccEEEEEeCCCceEEEeecCccHH
Q 029208 114 LVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVK----VLPYFHFYRGAHGQLESFSCSLAKV 189 (197)
Q Consensus 114 ~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~----~~Pt~~~~~~g~~~~~~~~g~~~~~ 189 (197)
.-++.|+.|.|+-|......++ -.++.+-.+..++...+.++++|. +-=| .++ +| ..+.|..+.+
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk-----~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT-~VI-~G----y~vEGHVPa~ 94 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMK-----ANGFEVKVVETDDFLALKRRLGIPYEMQSCHT-AVI-NG----YYVEGHVPAE 94 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHH-----hCCcEEEEeecCcHHHHHHhcCCChhhccccE-EEE-cC----EEEeccCCHH
Confidence 4477799999999998877766 236777777777778888888875 2223 333 33 3456778888
Q ss_pred HHHhhhc
Q 029208 190 MLRILIQ 196 (197)
Q Consensus 190 ~l~~fI~ 196 (197)
.+..+++
T Consensus 95 aI~~ll~ 101 (149)
T COG3019 95 AIARLLA 101 (149)
T ss_pred HHHHHHh
Confidence 8877764
No 237
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=80.05 E-value=4.9 Score=25.40 Aligned_cols=51 Identities=8% Similarity=0.118 Sum_probs=33.6
Q ss_pred EEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECC----CCHHHHHHCCCCcccEEEE
Q 029208 118 EFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFD----ENKPMCKSLNVKVLPYFHF 171 (197)
Q Consensus 118 ~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d----~~~~l~~~~~v~~~Pt~~~ 171 (197)
.|+.++|+.|++..-.+.+..-. +....+|.. ..+++.+...-..+|++..
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~~l~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEKGID---VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEeCCCCcchHHHHHHHHHcCCC---ceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 47778999999988887765322 344455542 2345555556678999965
No 238
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=79.40 E-value=19 Score=32.06 Aligned_cols=83 Identities=11% Similarity=0.048 Sum_probs=54.9
Q ss_pred CCeEEEEEEcCCChhHHhhHH-HHHHHH--HhC-CCeEEEEEECCC--CHHHHHHCCCCcccEEEEEeCCCceEEEeecC
Q 029208 112 DRLVIVEFYGTWCASCRALFP-KLCRTA--EEH-PEIVFLKVNFDE--NKPMCKSLNVKVLPYFHFYRGAHGQLESFSCS 185 (197)
Q Consensus 112 ~k~vlv~F~a~wC~~Ck~~~p-~l~~la--~~~-~~v~~~~Vd~d~--~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~ 185 (197)
++.++|.|-+-......++.. .|.+-. +.. ..++.++|+... ...+..-|.+..+|.++|+...+..++.+.|.
T Consensus 18 kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevitg~ 97 (506)
T KOG2507|consen 18 KKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVITGF 97 (506)
T ss_pred CCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEeecc
Confidence 445555555555566665552 232221 122 236777777653 35677889999999999999888899999999
Q ss_pred ccHHHHHhh
Q 029208 186 LAKVMLRIL 194 (197)
Q Consensus 186 ~~~~~l~~f 194 (197)
...++|..-
T Consensus 98 v~adeL~~~ 106 (506)
T KOG2507|consen 98 VTADELASS 106 (506)
T ss_pred ccHHHHHHH
Confidence 887766543
No 239
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=77.64 E-value=2.6 Score=32.71 Aligned_cols=38 Identities=13% Similarity=0.320 Sum_probs=28.9
Q ss_pred CHHHHHHCCCCcccEEEEEeCCCceEEEeecCccHHHHHhhhc
Q 029208 154 NKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 154 ~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
+...+.+.||.|+||+++ +|+ ..+.|..+.+.+.+.|+
T Consensus 164 ~~~~a~~~gv~G~Pt~vv--~g~---~~~~G~~~~~~~~~~i~ 201 (201)
T cd03024 164 DEARARQLGISGVPFFVF--NGK---YAVSGAQPPEVFLQALR 201 (201)
T ss_pred HHHHHHHCCCCcCCEEEE--CCe---EeecCCCCHHHHHHHhC
Confidence 345678899999999998 433 34688999888887664
No 240
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=77.59 E-value=6 Score=28.26 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=23.5
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCC
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDE 153 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~ 153 (197)
+..|+.++|+.|++....+++. ++.+-.+|+.+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~ 34 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFK 34 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEecCC
Confidence 3457789999999988877764 45555566544
No 241
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=76.98 E-value=4.9 Score=32.79 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=37.9
Q ss_pred HHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHh-----CCCeEEEEEECC
Q 029208 107 LSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEE-----HPEIVFLKVNFD 152 (197)
Q Consensus 107 l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~-----~~~v~~~~Vd~d 152 (197)
+.+..++.+||-+-..+|..|..-...++.|..+ +++|.|+.||--
T Consensus 21 m~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 21 MLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred hhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 4455689999999999999999999988888654 557999999964
No 242
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=76.57 E-value=4.7 Score=25.68 Aligned_cols=50 Identities=10% Similarity=0.120 Sum_probs=29.2
Q ss_pred EEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEE
Q 029208 118 EFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFH 170 (197)
Q Consensus 118 ~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~ 170 (197)
.++.++|++|++..-.+....-. +..+.++.++.....+..+-..+|++.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~---~~~~~~~~~~~~~~~~~~~~~~vP~L~ 52 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIP---VEQIILQNDDEATPIRMIGAKQVPILE 52 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCC---eEEEECCCCchHHHHHhcCCCccCEEE
Confidence 46678999999877666554222 333444443333333444456789874
No 243
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.55 E-value=5.9 Score=26.58 Aligned_cols=54 Identities=19% Similarity=0.179 Sum_probs=35.2
Q ss_pred EEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCC--------------HH--HHHHCCCCcccEEEEEeCCC
Q 029208 117 VEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN--------------KP--MCKSLNVKVLPYFHFYRGAH 176 (197)
Q Consensus 117 v~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~--------------~~--l~~~~~v~~~Pt~~~~~~g~ 176 (197)
+.|++.-|+.|..+...++++.-. +=.|++.+. ++ -.+..|--|+|.+..= +|+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~-----yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~-d~~ 74 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVD-----YDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTD-DGK 74 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCC-----ceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeC-CCc
Confidence 569999999999888877766433 233333321 22 2456778899998764 444
No 244
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=76.41 E-value=16 Score=29.08 Aligned_cols=42 Identities=17% Similarity=0.266 Sum_probs=30.5
Q ss_pred CCCeEEEEEEcCCC-hhHHhhHHHHHHHHHhCC-----CeEEEEEECC
Q 029208 111 GDRLVIVEFYGTWC-ASCRALFPKLCRTAEEHP-----EIVFLKVNFD 152 (197)
Q Consensus 111 ~~k~vlv~F~a~wC-~~Ck~~~p~l~~la~~~~-----~v~~~~Vd~d 152 (197)
++++++|+|.=+.| ..|-.+...+.++.++.. +++++-|-+|
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvD 113 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVD 113 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEEC
Confidence 58999999987878 569988888888777654 2554444444
No 245
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=76.34 E-value=13 Score=32.55 Aligned_cols=72 Identities=13% Similarity=0.256 Sum_probs=58.9
Q ss_pred hHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEEE
Q 029208 100 TQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHF 171 (197)
Q Consensus 100 ~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~ 171 (197)
.++..+.++...+..-+=-|++-.|..|-.....+.-++--.|++....||-.-.++-.+.-+|-++||+++
T Consensus 104 ~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtvfl 175 (520)
T COG3634 104 DQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTVFL 175 (520)
T ss_pred hHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceEEE
Confidence 345555666656677777788899999999999999888888999999999887777677779999999764
No 246
>PRK12559 transcriptional regulator Spx; Provisional
Probab=76.19 E-value=5 Score=29.64 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=22.0
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECC
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFD 152 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d 152 (197)
+..|+.++|+.|++....+++- ++.+-.+|+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~ 33 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNIV 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEee
Confidence 4568899999999988766654 3444444443
No 247
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=75.97 E-value=1.1 Score=30.43 Aligned_cols=66 Identities=12% Similarity=0.046 Sum_probs=47.6
Q ss_pred cCCChhHHhhHHHHHHHHHhC-CC-eEEEEEECCCCHHHHHHCCCCcccEEEEEeCCCceEEEeecCccH
Q 029208 121 GTWCASCRALFPKLCRTAEEH-PE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAK 188 (197)
Q Consensus 121 a~wC~~Ck~~~p~l~~la~~~-~~-v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~~~~ 188 (197)
+..-+..+.....+..+.+.+ ++ +.+=-||+.+++++++.++|-.+||++-..++ ...++.|.+..
T Consensus 5 ~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik~~P~--P~rrliGdls~ 72 (82)
T PF07689_consen 5 AGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLIKESPE--PRRRLIGDLSD 72 (82)
T ss_dssp SSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHHTTSSH--HHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEeeccCC--CceEEeccCch
Confidence 334456677778888887764 33 88889999999999999999999998754332 33445554443
No 248
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=75.85 E-value=5 Score=32.61 Aligned_cols=35 Identities=14% Similarity=0.245 Sum_probs=26.8
Q ss_pred HHHHHCCCCcccEEEEEeCCCceEEEeecCccHHHHHhhh
Q 029208 156 PMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKVMLRILI 195 (197)
Q Consensus 156 ~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~fI 195 (197)
..+++.||+++|||+| +++ ....|..+.+.+...|
T Consensus 175 ~~A~e~gI~gVP~fv~--d~~---~~V~Gaq~~~v~~~al 209 (225)
T COG2761 175 AAAQEMGIRGVPTFVF--DGK---YAVSGAQPYDVLEDAL 209 (225)
T ss_pred HHHHHCCCccCceEEE--cCc---EeecCCCCHHHHHHHH
Confidence 3678899999999999 433 5678888887766544
No 249
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=75.78 E-value=15 Score=23.93 Aligned_cols=49 Identities=12% Similarity=0.084 Sum_probs=29.7
Q ss_pred EEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCC----HHHHHHCCCCcccEEE
Q 029208 117 VEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN----KPMCKSLNVKVLPYFH 170 (197)
Q Consensus 117 v~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~----~~l~~~~~v~~~Pt~~ 170 (197)
..++.++|+.|++..-.+.+. ++.+-.++++.. .++.+.-.-..+|+++
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~ 55 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL-----ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLV 55 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc-----CCcEEEEECCCChHHHHHHHHhCCCCcccEEE
Confidence 446678999999887776655 333333444332 2344444556899984
No 250
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=73.75 E-value=21 Score=29.70 Aligned_cols=85 Identities=15% Similarity=0.237 Sum_probs=52.3
Q ss_pred hcCCCeEEEEEEcCCChh-HHhhHHHHHHHHHhC---CCe----EEEEEECCCC--------------------------
Q 029208 109 QAGDRLVIVEFYGTWCAS-CRALFPKLCRTAEEH---PEI----VFLKVNFDEN-------------------------- 154 (197)
Q Consensus 109 ~~~~k~vlv~F~a~wC~~-Ck~~~p~l~~la~~~---~~v----~~~~Vd~d~~-------------------------- 154 (197)
+..++.++++|.-+.|+. |=.....+.++.++. +++ .|+.||=+..
T Consensus 136 df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqv 215 (280)
T KOG2792|consen 136 DFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQV 215 (280)
T ss_pred ccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHH
Confidence 345899999999999964 766666666555533 222 4667764311
Q ss_pred HHHHHHCCCCccc-------------EEE--EEeCCCceEEEeecCccHHHHHh
Q 029208 155 KPMCKSLNVKVLP-------------YFH--FYRGAHGQLESFSCSLAKVMLRI 193 (197)
Q Consensus 155 ~~l~~~~~v~~~P-------------t~~--~~~~g~~~~~~~~g~~~~~~l~~ 193 (197)
..+|++|.|.--+ +++ ++++.++.+..|.-+.+++++..
T Consensus 216 k~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~ 269 (280)
T KOG2792|consen 216 KQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELAD 269 (280)
T ss_pred HHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHH
Confidence 3467888775333 233 34555656666766667766644
No 251
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=71.98 E-value=23 Score=22.68 Aligned_cols=53 Identities=19% Similarity=0.135 Sum_probs=31.2
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcccEEEEE
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFY 172 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~Pt~~~~ 172 (197)
+..|+.+.|+.|++..-.+.+..-. +.+..+|.....++ +.-+-..+|++..=
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~---y~~~~~~~~~~~~~-~~~~~~~vP~l~~~ 54 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIP---YEVVEVNPVSRKEI-KWSSYKKVPILRVE 54 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCc---eEEEECCchhHHHH-HHhCCCccCEEEEC
Confidence 3457788999999998666554222 33333333222333 33456689998753
No 252
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=71.90 E-value=6.5 Score=27.68 Aligned_cols=54 Identities=17% Similarity=0.270 Sum_probs=37.6
Q ss_pred EEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCC--cccEEEEEe
Q 029208 119 FYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVK--VLPYFHFYR 173 (197)
Q Consensus 119 F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~--~~Pt~~~~~ 173 (197)
||-.+|+-|......+.+. +....+.|+.+.-....++.+.+++. ..-+.+...
T Consensus 2 ~YDg~C~lC~~~~~~l~~~-d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 57 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR-DRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLI 57 (114)
T ss_pred EECCCCHhHHHHHHHHHhc-CCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEe
Confidence 7889999999999888877 33345888777545555666677765 455555543
No 253
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=71.54 E-value=20 Score=22.52 Aligned_cols=51 Identities=10% Similarity=0.077 Sum_probs=32.1
Q ss_pred EEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCC-HHHHHHCCCCcccEEE
Q 029208 117 VEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN-KPMCKSLNVKVLPYFH 170 (197)
Q Consensus 117 v~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~-~~l~~~~~v~~~Pt~~ 170 (197)
..|+.++|+.|++..-.+++..-. +....+|.... +++.+......+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS---VEIIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc---cEEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 457789999999987776554322 34444554433 4555555567899774
No 254
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=70.43 E-value=8.1 Score=24.57 Aligned_cols=51 Identities=18% Similarity=0.185 Sum_probs=33.6
Q ss_pred EEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCC----CHHHHHHCCCCcccEEE
Q 029208 117 VEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDE----NKPMCKSLNVKVLPYFH 170 (197)
Q Consensus 117 v~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~----~~~l~~~~~v~~~Pt~~ 170 (197)
..|+.++|+.|++..-.+++..- ++....+|..+ .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi---~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL---ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC---CCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 35788999999987777666532 24455565432 25565555566899995
No 255
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=66.61 E-value=11 Score=27.74 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=21.7
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECC
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFD 152 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d 152 (197)
+..|+.++|+.|++....+++- ++.|-.+|+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----~i~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-----QLSYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEECC
Confidence 3457789999999987666543 4555555554
No 256
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=64.28 E-value=9.6 Score=29.12 Aligned_cols=35 Identities=20% Similarity=0.073 Sum_probs=26.0
Q ss_pred HHHHHHCCCCcccEEEEEeCCCceEEEeecCccHHHHHhhh
Q 029208 155 KPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKVMLRILI 195 (197)
Q Consensus 155 ~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~fI 195 (197)
...+.++||.++||+++ +| +.+.|...-+.+...|
T Consensus 157 ~~~a~~~gi~gvPtfvv--~g----~~~~G~~~l~~~~~~l 191 (192)
T cd03022 157 TEEAIARGVFGVPTFVV--DG----EMFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHcCCCcCCeEEE--CC----eeecccccHHHHHHHh
Confidence 45677899999999998 33 3566887777776654
No 257
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=63.84 E-value=56 Score=26.24 Aligned_cols=34 Identities=6% Similarity=0.174 Sum_probs=26.6
Q ss_pred CHHHHHHCCCCcccEEEEEeCCCceEEEeecCccHH
Q 029208 154 NKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKV 189 (197)
Q Consensus 154 ~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~~~~~ 189 (197)
++.+-++|+|+.+|+|++.... ....+.|+.+-.
T Consensus 151 DP~lF~~F~I~~VPafVv~C~~--~yD~I~GNIsl~ 184 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCSQ--GYDIIRGNLRVG 184 (212)
T ss_pred CHHHHHhcCCccccEEEEEcCC--CCCEEEecccHH
Confidence 5888999999999999998643 346777776643
No 258
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=62.72 E-value=56 Score=23.60 Aligned_cols=86 Identities=13% Similarity=0.110 Sum_probs=62.7
Q ss_pred CCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC---CeEEEEEECCCCHHHH----HHCCCC-cccEEEEEeCCC--ceEE
Q 029208 111 GDRLVIVEFYGTWCASCRALFPKLCRTAEEHP---EIVFLKVNFDENKPMC----KSLNVK-VLPYFHFYRGAH--GQLE 180 (197)
Q Consensus 111 ~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~---~v~~~~Vd~d~~~~l~----~~~~v~-~~Pt~~~~~~g~--~~~~ 180 (197)
-+...++-|--+--+.-.++.+.++++|+++. ++.|+.||-|+.+-+. +.|+|. .-|.+=+.+-.. ..--
T Consensus 19 ~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~ 98 (120)
T cd03074 19 LDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWM 98 (120)
T ss_pred cCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeE
Confidence 35778888999999999999999999999864 5999999999887553 456654 358887775432 2333
Q ss_pred EeecC---ccHHHHHhhhc
Q 029208 181 SFSCS---LAKVMLRILIQ 196 (197)
Q Consensus 181 ~~~g~---~~~~~l~~fI~ 196 (197)
...+. .+.+++..||.
T Consensus 99 ~m~~~~d~~t~~~Le~Wie 117 (120)
T cd03074 99 EMDDDEDLPTAEELEDWIE 117 (120)
T ss_pred ecccccccCcHHHHHHHHH
Confidence 33333 55678888874
No 259
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=61.80 E-value=29 Score=23.26 Aligned_cols=53 Identities=9% Similarity=0.112 Sum_probs=33.4
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCC-HHHHHHCCCCcccEEEE
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN-KPMCKSLNVKVLPYFHF 171 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~-~~l~~~~~v~~~Pt~~~ 171 (197)
+..|+.+.|+.|++..-.+.+..- ++.++.+|.... +++.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl---~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI---PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC---CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 344667889999987666655422 245556665443 34555555678999873
No 260
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=58.57 E-value=46 Score=21.29 Aligned_cols=49 Identities=10% Similarity=-0.029 Sum_probs=35.2
Q ss_pred EEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCC-CHHHHHHCCCCcccEEE
Q 029208 119 FYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDE-NKPMCKSLNVKVLPYFH 170 (197)
Q Consensus 119 F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~-~~~l~~~~~v~~~Pt~~ 170 (197)
++.++|+.|++..=.++...- .+.+..++..+ ...+.+...-..+|++.
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~~~~~~~~~p~~~vPvL~ 51 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEKRPEFLKLNPKGKVPVLV 51 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTSTSHHHHHHSTTSBSSEEE
T ss_pred CCcCCChHHHHHHHHHHHcCC---eEEEeccCcccchhHHHhhcccccceEEE
Confidence 678999999998766655422 35666666655 35666777788999997
No 261
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=57.56 E-value=16 Score=27.93 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=24.4
Q ss_pred EEEEEcCCChhHHhhHHHHHHHHHhCC
Q 029208 116 IVEFYGTWCASCRALFPKLCRTAEEHP 142 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la~~~~ 142 (197)
|.+|+-+.|+.|-...+.+.++.++++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 567889999999999999999999884
No 262
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=57.31 E-value=13 Score=28.53 Aligned_cols=22 Identities=9% Similarity=0.262 Sum_probs=18.3
Q ss_pred HHHHHHCCCCcccEEEEEeCCC
Q 029208 155 KPMCKSLNVKVLPYFHFYRGAH 176 (197)
Q Consensus 155 ~~l~~~~~v~~~Pt~~~~~~g~ 176 (197)
...+.++||.++||+++.+.+.
T Consensus 159 ~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHcCCCccCEEEEEeCCe
Confidence 4567889999999999997654
No 263
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=56.83 E-value=11 Score=29.78 Aligned_cols=39 Identities=13% Similarity=-0.003 Sum_probs=26.9
Q ss_pred HHHHHCCCCcccEEEEEeCCCceEEEeecCccHHHHHhhh
Q 029208 156 PMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKVMLRILI 195 (197)
Q Consensus 156 ~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~fI 195 (197)
+-+.+.||.|+||+++=++++ ..+.|-|..--+.+.+++
T Consensus 170 ~~A~~~Gv~GVP~fvv~~~~~-~~e~fwG~Drl~~~~~~l 208 (209)
T cd03021 170 DEALKYGAFGLPWIVVTNDKG-KTEMFFGSDRFEQVADFL 208 (209)
T ss_pred HHHHHcCCCCCCEEEEEcCCC-CccceecCCcHHHHHHHh
Confidence 345677999999999843322 345777877777776665
No 264
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=53.76 E-value=1.2e+02 Score=24.72 Aligned_cols=62 Identities=18% Similarity=0.145 Sum_probs=38.7
Q ss_pred HHHHHHhcCCCeEEEEEEcCC------ChhHHhhHHHHHHHHHhCC-CeEEEEEECCCCHHHHHH----CCCCc
Q 029208 103 FLEALSQAGDRLVIVEFYGTW------CASCRALFPKLCRTAEEHP-EIVFLKVNFDENKPMCKS----LNVKV 165 (197)
Q Consensus 103 ~~~~l~~~~~k~vlv~F~a~w------C~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~~----~~v~~ 165 (197)
-.+.+++. +++|-|.+|.+- -..=+.+...+++.++..+ ++.+-.||-+.+++..++ +|+..
T Consensus 16 T~~~L~~L-~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~ 88 (271)
T PF09822_consen 16 TKKVLKSL-DEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQP 88 (271)
T ss_pred HHHHHHhC-CCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCc
Confidence 34455554 456666666554 3344455555556666666 599999998777666555 88776
No 265
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.71 E-value=63 Score=22.96 Aligned_cols=68 Identities=13% Similarity=0.190 Sum_probs=45.2
Q ss_pred HHHHHHHhcCCCeEEEEEE----cCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCC-CCcccEEE-EEeCC
Q 029208 102 EFLEALSQAGDRLVIVEFY----GTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLN-VKVLPYFH-FYRGA 175 (197)
Q Consensus 102 ~~~~~l~~~~~k~vlv~F~----a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~-v~~~Pt~~-~~~~g 175 (197)
.+++.+++ .+|+++.- .|-|+...+....+.... -+.|..+|+-.++++.+... ...|||+= +|.+|
T Consensus 7 ~I~~~i~~---n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g----~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~G 79 (105)
T COG0278 7 RIQKQIKE---NPVVLFMKGTPEFPQCGFSAQAVQILSACG----VVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNG 79 (105)
T ss_pred HHHHHhhc---CceEEEecCCCCCCCCCccHHHHHHHHHcC----CcceeEEeeccCHHHHhccHhhcCCCCCceeeECC
Confidence 34444543 45555443 467888777766665442 27899999999999987766 45699985 67665
Q ss_pred C
Q 029208 176 H 176 (197)
Q Consensus 176 ~ 176 (197)
.
T Consensus 80 E 80 (105)
T COG0278 80 E 80 (105)
T ss_pred E
Confidence 4
No 266
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=53.68 E-value=41 Score=23.97 Aligned_cols=66 Identities=12% Similarity=0.172 Sum_probs=46.1
Q ss_pred HHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC--CeEEEEEECCCC--------HHHHHHCCCCcccEEEEEe
Q 029208 107 LSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDEN--------KPMCKSLNVKVLPYFHFYR 173 (197)
Q Consensus 107 l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~~--------~~l~~~~~v~~~Pt~~~~~ 173 (197)
+.+.++++++|.=-|+-|+.-. .-..++++.++|. ++.++..-|.+. .++.+-..-..-+++-+|.
T Consensus 16 l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~~~~~~~~F~vf~ 91 (108)
T PF00255_consen 16 LSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFCKEKFGVTFPVFE 91 (108)
T ss_dssp GGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHHCHCHT-SSEEBS
T ss_pred HHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHHHhccCCcccceE
Confidence 4556789999999999999988 7778999999987 588888887642 3343322222345666664
No 267
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=52.34 E-value=96 Score=23.10 Aligned_cols=81 Identities=7% Similarity=0.091 Sum_probs=56.2
Q ss_pred CCeEEEEEEcCCChhHHhhH------HHHHHHHHhCCCeEEEEEECCCCH------------------HHHHHCCCCccc
Q 029208 112 DRLVIVEFYGTWCASCRALF------PKLCRTAEEHPEIVFLKVNFDENK------------------PMCKSLNVKVLP 167 (197)
Q Consensus 112 ~k~vlv~F~a~wC~~Ck~~~------p~l~~la~~~~~v~~~~Vd~d~~~------------------~l~~~~~v~~~P 167 (197)
.|+.+|+.+.+--..+..+- +.+.++.+ .++.+..-|++... ..++.++...+|
T Consensus 21 ~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~--~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~fP 98 (136)
T cd02990 21 RKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLS--QNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQLP 98 (136)
T ss_pred cceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHH--cCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCCC
Confidence 79999999998775444333 34444444 35777778876542 245678899999
Q ss_pred EEEEEeCCC---ceEEEeecCccHHHHHhh
Q 029208 168 YFHFYRGAH---GQLESFSCSLAKVMLRIL 194 (197)
Q Consensus 168 t~~~~~~g~---~~~~~~~g~~~~~~l~~f 194 (197)
.+.++.... ..+.++.|..+.+++.+-
T Consensus 99 ~~avI~~~~~~~~vl~~i~G~~~~~ell~~ 128 (136)
T cd02990 99 AILIIMGKRSSNEVLNVIQGNTGVDELLMR 128 (136)
T ss_pred eEEEEEecCCceEEEEEEECCCCHHHHHHH
Confidence 999886432 567888999888877553
No 268
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=50.16 E-value=24 Score=27.74 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=25.1
Q ss_pred HHHhcCCCeEEEEEE-cCCChhHHhhHHHHHHHHHhCC
Q 029208 106 ALSQAGDRLVIVEFY-GTWCASCRALFPKLCRTAEEHP 142 (197)
Q Consensus 106 ~l~~~~~k~vlv~F~-a~wC~~Ck~~~p~l~~la~~~~ 142 (197)
.+.++.++.|++.|| .++--.|-...-.+.+.+.+|.
T Consensus 27 ~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~ 64 (196)
T KOG0852|consen 27 KLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFR 64 (196)
T ss_pred eehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHH
Confidence 456677899999999 5666666555555666555554
No 269
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=47.54 E-value=1.3e+02 Score=23.17 Aligned_cols=43 Identities=7% Similarity=-0.055 Sum_probs=29.4
Q ss_pred HHHHHHCCCCc-ccEEEEEeCCCceEEEeecCccHHHHHhhhcC
Q 029208 155 KPMCKSLNVKV-LPYFHFYRGAHGQLESFSCSLAKVMLRILIQV 197 (197)
Q Consensus 155 ~~l~~~~~v~~-~Pt~~~~~~g~~~~~~~~g~~~~~~l~~fI~~ 197 (197)
..+.+.|+... --++++++..+...-.-.|.++..++.++|++
T Consensus 113 G~~~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~L 156 (160)
T PF09695_consen 113 GVVRKAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIAL 156 (160)
T ss_pred CceeccccCCCCCceEEEEcCCccEEEEECCCCCHHHHHHHHHH
Confidence 34455566543 35677776666566677799999999988864
No 270
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=46.89 E-value=1.3e+02 Score=23.10 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=29.1
Q ss_pred HHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCC--eEEEEEECC
Q 029208 107 LSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE--IVFLKVNFD 152 (197)
Q Consensus 107 l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~--v~~~~Vd~d 152 (197)
+.+.+++.++|.=.|+-|+.--+ -..++.+.++|.+ +.++..-|+
T Consensus 20 l~~~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~Gf~VLgFPcN 66 (162)
T COG0386 20 LSDYKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDKGFEVLGFPCN 66 (162)
T ss_pred HHHhCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhCCcEEEecccc
Confidence 45567899999999999986542 2345555566653 666655544
No 271
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=46.87 E-value=1.1e+02 Score=22.33 Aligned_cols=52 Identities=10% Similarity=0.111 Sum_probs=33.0
Q ss_pred CCeEEEEEECCCCH----------HHHHHCCCCcccEEEEEeCCCceEEEeecCccHHHHHhhhcC
Q 029208 142 PEIVFLKVNFDENK----------PMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKVMLRILIQV 197 (197)
Q Consensus 142 ~~v~~~~Vd~d~~~----------~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~fI~~ 197 (197)
.++.+.+.|...++ ++.++-|...+|-+++ +| ++.......+.+++.+|+.+
T Consensus 39 ~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dG--eiv~~G~YPt~eEl~~~~~i 100 (123)
T PF06953_consen 39 QGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DG--EIVKTGRYPTNEELAEWLGI 100 (123)
T ss_dssp TT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TT--EEEEESS---HHHHHHHHT-
T ss_pred CCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CC--EEEEecCCCCHHHHHHHhCC
Confidence 47999999998763 3456668999998765 33 57777777888999998764
No 272
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=45.72 E-value=29 Score=24.84 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=17.1
Q ss_pred EEEEEcCCChhHHhhHHHHHHH
Q 029208 116 IVEFYGTWCASCRALFPKLCRT 137 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~l 137 (197)
+..|+.+.|..|++....+++-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~ 23 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA 23 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 3468899999999888766644
No 273
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=45.04 E-value=1.1e+02 Score=26.29 Aligned_cols=40 Identities=10% Similarity=0.129 Sum_probs=32.5
Q ss_pred CCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCC
Q 029208 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN 154 (197)
Q Consensus 112 ~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~ 154 (197)
....||++. ||.|++....++.+.+..+.+.++.||+...
T Consensus 76 ~~~~lIELG---sG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~ 115 (319)
T TIGR03439 76 SGSMLVELG---SGNLRKVGILLEALERQKKSVDYYALDVSRS 115 (319)
T ss_pred CCCEEEEEC---CCchHHHHHHHHHHHhcCCCceEEEEECCHH
Confidence 445788876 8999999999999986555689999999854
No 274
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=44.97 E-value=23 Score=28.11 Aligned_cols=43 Identities=19% Similarity=0.334 Sum_probs=30.7
Q ss_pred CCCeEEEEEE-cCCChhHHhhHHHHHHHHHhCC--CeEEEEEECCC
Q 029208 111 GDRLVIVEFY-GTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE 153 (197)
Q Consensus 111 ~~k~vlv~F~-a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d~ 153 (197)
.++.+++.|| ++--..|=.....+.+...+|. ++.++.+.+|.
T Consensus 32 ~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds 77 (194)
T COG0450 32 YGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDS 77 (194)
T ss_pred cCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCc
Confidence 4588888888 6666777777777777776665 47777776653
No 275
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=42.52 E-value=1.2e+02 Score=24.79 Aligned_cols=60 Identities=15% Similarity=0.237 Sum_probs=43.4
Q ss_pred CCeEEEEEE----cCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCC-CCcccEEE-EEeCCC
Q 029208 112 DRLVIVEFY----GTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLN-VKVLPYFH-FYRGAH 176 (197)
Q Consensus 112 ~k~vlv~F~----a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~-v~~~Pt~~-~~~~g~ 176 (197)
.++|+++.= .|-||..+++...+... ++.+...|+-.+.++.+..+ ...+||+= +|.+|.
T Consensus 138 a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~-----nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GE 203 (227)
T KOG0911|consen 138 AKPVMLFMKGTPEEPKCGFSRQLVGILQSH-----NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGE 203 (227)
T ss_pred cCeEEEEecCCCCcccccccHHHHHHHHHc-----CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCE
Confidence 456666443 47899888888777665 46688899988888877666 45699985 676654
No 276
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=41.64 E-value=47 Score=20.64 Aligned_cols=51 Identities=8% Similarity=0.030 Sum_probs=31.7
Q ss_pred EEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCC----CHHHHHHCCCCcccEEEE
Q 029208 118 EFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDE----NKPMCKSLNVKVLPYFHF 171 (197)
Q Consensus 118 ~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~----~~~l~~~~~v~~~Pt~~~ 171 (197)
.|+.+.|+.|++..-.+.+..- ++....+|... .+++.+...-..+|++..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGI---PYEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCC---CcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 4778899999987766665432 24455555432 234444444667999863
No 277
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=41.39 E-value=1e+02 Score=22.99 Aligned_cols=82 Identities=13% Similarity=0.272 Sum_probs=41.8
Q ss_pred CCeEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHH-hhHHHHHHHHHh--CCC---eEEEEEECCCCHHHHHHCC---
Q 029208 92 PNMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCR-ALFPKLCRTAEE--HPE---IVFLKVNFDENKPMCKSLN--- 162 (197)
Q Consensus 92 ~~~~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck-~~~p~l~~la~~--~~~---v~~~~Vd~d~~~~l~~~~~--- 162 (197)
..+.++.+.++.++.+.+. ....+|.. .+-||--- ...|-....... -|| -+|...|.+.... ++.|=
T Consensus 16 ~Gf~eL~T~e~Vd~~~~~~-~GTtlVvV-NSVCGCAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt~~-aR~yf~~~ 92 (136)
T PF06491_consen 16 AGFEELTTAEEVDEALKNK-EGTTLVVV-NSVCGCAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEATAK-AREYFEPY 92 (136)
T ss_dssp TT-EE--SHHHHHHHHHH---SEEEEEE-E-SSHHHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHHHH-HHHTSTTS
T ss_pred cCccccCCHHHHHHHHhCC-CCcEEEEE-eccccccccccCHHHHHHHhCCCCCCceEEeccCCCHHHHHH-HHHhcCCC
Confidence 4688999999999999852 44555533 46686332 445655544432 333 2233333322222 33432
Q ss_pred CCcccEEEEEeCCC
Q 029208 163 VKVLPYFHFYRGAH 176 (197)
Q Consensus 163 v~~~Pt~~~~~~g~ 176 (197)
--+-|.+.+|++|+
T Consensus 93 pPSSPS~ALfKdGe 106 (136)
T PF06491_consen 93 PPSSPSIALFKDGE 106 (136)
T ss_dssp ---SSEEEEEETTE
T ss_pred CCCCchheeeeCCE
Confidence 34789999999875
No 278
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=41.26 E-value=43 Score=26.80 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=19.4
Q ss_pred HHHHHHCCCCcccEEEEEeCCC
Q 029208 155 KPMCKSLNVKVLPYFHFYRGAH 176 (197)
Q Consensus 155 ~~l~~~~~v~~~Pt~~~~~~g~ 176 (197)
..+++++++.++||+++-++|+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~ 185 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGT 185 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCc
Confidence 3478899999999999999876
No 279
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=40.48 E-value=26 Score=23.47 Aligned_cols=32 Identities=6% Similarity=0.076 Sum_probs=18.4
Q ss_pred cccEEEEEeCCCceEEEee-cCccHHHHHhhhc
Q 029208 165 VLPYFHFYRGAHGQLESFS-CSLAKVMLRILIQ 196 (197)
Q Consensus 165 ~~Pt~~~~~~g~~~~~~~~-g~~~~~~l~~fI~ 196 (197)
.-|++++|+..+++++++. ...+.+.+.+|++
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~ 73 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLN 73 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHH
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHH
Confidence 4699999997776666655 4456677777763
No 280
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=37.14 E-value=50 Score=23.49 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=22.7
Q ss_pred EEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCC
Q 029208 117 VEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDE 153 (197)
Q Consensus 117 v~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~ 153 (197)
..|+.+.|..|++....+++- ++.+-.+|+.+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~ 33 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKYLK 33 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccC
Confidence 458889999999988887763 44455555543
No 281
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=36.98 E-value=28 Score=32.20 Aligned_cols=76 Identities=17% Similarity=0.171 Sum_probs=53.1
Q ss_pred ChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHH---HHHHhC-CCeEEEEEECCCCHHHH--------HHCCCCcc
Q 029208 99 STQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLC---RTAEEH-PEIVFLKVNFDENKPMC--------KSLNVKVL 166 (197)
Q Consensus 99 ~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~---~la~~~-~~v~~~~Vd~d~~~~l~--------~~~~v~~~ 166 (197)
+.+.|+.+-.+ +|++++-..-+.|..|..|..+-. +.++.. .+++-++||-++-+++- ...+--|+
T Consensus 101 gqeaf~kar~e--nkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGW 178 (786)
T KOG2244|consen 101 GQEAFNKARAE--NKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGW 178 (786)
T ss_pred hHHHHHHHHhc--CCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCC
Confidence 46778776655 899999999999999998875422 233332 34666677766665543 34577789
Q ss_pred cEEEEEeCCC
Q 029208 167 PYFHFYRGAH 176 (197)
Q Consensus 167 Pt~~~~~~g~ 176 (197)
|--+|..++-
T Consensus 179 PmsV~LTPdL 188 (786)
T KOG2244|consen 179 PMSVFLTPDL 188 (786)
T ss_pred ceeEEeCCCc
Confidence 9999887654
No 282
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=36.24 E-value=1.2e+02 Score=23.25 Aligned_cols=43 Identities=21% Similarity=0.226 Sum_probs=33.5
Q ss_pred cCCCe-EEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECC
Q 029208 110 AGDRL-VIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFD 152 (197)
Q Consensus 110 ~~~k~-vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d 152 (197)
..+|. ++..|=+=.-+.|-.....|.+.+.++.+..++-|..|
T Consensus 42 ~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~Vl~IS~D 85 (158)
T COG2077 42 FAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGNTVVLCISMD 85 (158)
T ss_pred cCCceEEEEEccCCCCchhhHHHHHHHHHHhccCCcEEEEEeCC
Confidence 34554 55556677789999999999999999999777777765
No 283
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=35.82 E-value=31 Score=27.14 Aligned_cols=20 Identities=10% Similarity=0.280 Sum_probs=16.1
Q ss_pred HHHHHHCCCCcccEEEEEeCCC
Q 029208 155 KPMCKSLNVKVLPYFHFYRGAH 176 (197)
Q Consensus 155 ~~l~~~~~v~~~Pt~~~~~~g~ 176 (197)
....++++|+++||+++ +|+
T Consensus 157 ~~~a~~~gI~gtPtfiI--nGk 176 (207)
T PRK10954 157 EKAAADLQLRGVPAMFV--NGK 176 (207)
T ss_pred HHHHHHcCCCCCCEEEE--CCE
Confidence 34568899999999998 555
No 284
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=34.15 E-value=82 Score=23.47 Aligned_cols=32 Identities=19% Similarity=0.493 Sum_probs=16.3
Q ss_pred HHHHHHhcCCCeEEEEEEc------CCChhHHhhHHHH
Q 029208 103 FLEALSQAGDRLVIVEFYG------TWCASCRALFPKL 134 (197)
Q Consensus 103 ~~~~l~~~~~k~vlv~F~a------~wC~~Ck~~~p~l 134 (197)
+..++.....+...|..++ +=||.|+++.-+|
T Consensus 61 I~~ais~G~~~~~~v~v~~~~~~~~sPCG~CRQ~i~Ef 98 (134)
T COG0295 61 IFKAISEGKRKFDAVVVVADTGKPVSPCGACRQVLAEF 98 (134)
T ss_pred HHHHHHcCCCcEEEEEEEcCCCCCcCCcHHHHHHHHHh
Confidence 3344444334444444422 2388888765544
No 285
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=32.88 E-value=2.1e+02 Score=21.40 Aligned_cols=75 Identities=15% Similarity=0.168 Sum_probs=48.4
Q ss_pred CCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCCHHHHHHCCCCcc-cEEEEEeCCCceEEEeecCccHHH
Q 029208 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVL-PYFHFYRGAHGQLESFSCSLAKVM 190 (197)
Q Consensus 112 ~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~~l~~~~~v~~~-Pt~~~~~~g~~~~~~~~g~~~~~~ 190 (197)
+++-.|.+|---|+-|-.....+.+. +.-..+.|+.+..+....+.+..++..- +-.+.+..++ ..+.|+.....
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~-D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g---~~~~~sdA~~~ 81 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRR-DQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAG---QLLVGSDAAIR 81 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHh-ccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCC---ceEeccHHHHH
Confidence 46667778999999999854444332 1122499999998888888888887643 5555555544 23444444433
No 286
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=32.33 E-value=60 Score=23.45 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=18.4
Q ss_pred EEEEEcCCChhHHhhHHHHHHHH
Q 029208 116 IVEFYGTWCASCRALFPKLCRTA 138 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~la 138 (197)
+..|+.+.|..|++....+++-.
T Consensus 3 itiy~~p~C~t~rka~~~L~~~g 25 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHG 25 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcC
Confidence 45688999999999988777553
No 287
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=31.36 E-value=88 Score=22.58 Aligned_cols=51 Identities=20% Similarity=0.361 Sum_probs=34.9
Q ss_pred ChhHHhhHHHHHHHHHhCCCeEEEEEECCCCH-HHHHHCC--CCcccEEEEEeC
Q 029208 124 CASCRALFPKLCRTAEEHPEIVFLKVNFDENK-PMCKSLN--VKVLPYFHFYRG 174 (197)
Q Consensus 124 C~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~~-~l~~~~~--v~~~Pt~~~~~~ 174 (197)
|++|..+.-.+...-..-..+.+.+|+...-. ++.+..| =++.|++++=.+
T Consensus 24 Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~ 77 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADG 77 (112)
T ss_pred CCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCC
Confidence 99999988877755444345788888876543 3444444 468999988654
No 288
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=31.32 E-value=2.2e+02 Score=21.05 Aligned_cols=31 Identities=19% Similarity=0.438 Sum_probs=22.0
Q ss_pred EEEEc--CCChhHHhhHHHHHHHHHhCCCeEEEEEE
Q 029208 117 VEFYG--TWCASCRALFPKLCRTAEEHPEIVFLKVN 150 (197)
Q Consensus 117 v~F~a--~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd 150 (197)
|+.|+ +-|..|.. .++++.++||++.+..++
T Consensus 99 i~l~te~~pC~SC~~---vi~qF~~~~pni~~~v~~ 131 (133)
T PF14424_consen 99 IDLFTELPPCESCSN---VIEQFKKDFPNIKVNVVY 131 (133)
T ss_pred EEEEecCCcChhHHH---HHHHHHHHCCCcEEEEec
Confidence 44444 45888875 788888999997766544
No 289
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=30.66 E-value=1.2e+02 Score=23.56 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=33.9
Q ss_pred HHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC--CeEEEEEECC
Q 029208 107 LSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFD 152 (197)
Q Consensus 107 l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~--~v~~~~Vd~d 152 (197)
+.+.+++.++|.=-|+-|+.-..--..+.++.++|. ++.++..-|.
T Consensus 29 l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCN 76 (171)
T KOG1651|consen 29 LSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCN 76 (171)
T ss_pred HHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccc
Confidence 445678888888888999888866668888888775 3666666554
No 290
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=30.07 E-value=1.5e+02 Score=18.85 Aligned_cols=51 Identities=10% Similarity=-0.055 Sum_probs=31.8
Q ss_pred EEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCC----CHHHHHHCCCCcccEEE
Q 029208 117 VEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDE----NKPMCKSLNVKVLPYFH 170 (197)
Q Consensus 117 v~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~----~~~l~~~~~v~~~Pt~~ 170 (197)
..|+.+.|+.|++..-.+.+..- ++.+..+|... .+++.+.-.-..+|++.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~ 56 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL---RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI 56 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC---CCEEEEecCCcCccCCHHHHHhCcCCCCCEEE
Confidence 35777889999877654444322 35566666532 23455555567899995
No 291
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=29.39 E-value=60 Score=22.95 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=16.4
Q ss_pred EEEEcCCChhHHhhHHHHHHH
Q 029208 117 VEFYGTWCASCRALFPKLCRT 137 (197)
Q Consensus 117 v~F~a~wC~~Ck~~~p~l~~l 137 (197)
..|+.+.|..|++....+++-
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~ 22 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA 22 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC
Confidence 457889999999987666544
No 292
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=25.93 E-value=2.5e+02 Score=20.03 Aligned_cols=74 Identities=11% Similarity=-0.017 Sum_probs=45.4
Q ss_pred CChhHHhhHHHHHHHHHhCC--CeEEEEE-ECCCC-----------HHHHHHCCCCc-ccEEEEEeCCCceEEEeecCcc
Q 029208 123 WCASCRALFPKLCRTAEEHP--EIVFLKV-NFDEN-----------KPMCKSLNVKV-LPYFHFYRGAHGQLESFSCSLA 187 (197)
Q Consensus 123 wC~~Ck~~~p~l~~la~~~~--~v~~~~V-d~d~~-----------~~l~~~~~v~~-~Pt~~~~~~g~~~~~~~~g~~~ 187 (197)
.-+.-+.....+.+-...+. ++.++.+ +-... ..+.++|++.. .-+++++..++++..++....+
T Consensus 21 ~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~~ 100 (118)
T PF13778_consen 21 DDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPID 100 (118)
T ss_pred CCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcEEEecCCCCC
Confidence 44555666667766544554 3555544 32222 26888888553 3456666555557778888888
Q ss_pred HHHHHhhhc
Q 029208 188 KVMLRILIQ 196 (197)
Q Consensus 188 ~~~l~~fI~ 196 (197)
.+++-..|+
T Consensus 101 ~~~lf~~ID 109 (118)
T PF13778_consen 101 PEELFDTID 109 (118)
T ss_pred HHHHHHHHh
Confidence 888776653
No 293
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=25.48 E-value=1.6e+02 Score=20.52 Aligned_cols=31 Identities=16% Similarity=0.429 Sum_probs=20.4
Q ss_pred EEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECCCC
Q 029208 119 FYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN 154 (197)
Q Consensus 119 F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d~~ 154 (197)
|+-+.|..|++....+++- ++.+-.+|..+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~-----gi~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN-----GIEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT-----T--EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHHc-----CCCeEeehhhhC
Confidence 5678999999998888753 566667777654
No 294
>PF09499 RE_ApaLI: ApaLI-like restriction endonuclease; InterPro: IPR019036 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes R.ApaLI and R.XbaI restriction endonucleases. ApaLI recognises and cleaves the sequence GTGCAC.
Probab=25.36 E-value=2.4e+02 Score=22.20 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=39.1
Q ss_pred CCeEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC
Q 029208 92 PNMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP 142 (197)
Q Consensus 92 ~~~~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~ 142 (197)
..-.+|..+-.+.+.++++.=+|+.|.||-|.=..-.++...++.+.....
T Consensus 123 Tdgdhi~kEhtrikvi~~aGy~PIrimf~~P~r~~~~~iq~~L~tlY~gvg 173 (191)
T PF09499_consen 123 TDGDHITKEHTRIKVIKSAGYKPIRIMFYYPNREQAIRIQTTLKTLYNGVG 173 (191)
T ss_pred cCCChhhhHHHHHHHHHHCCCcceEEEEeCCCHHHHHHHHHHHHHHHHhcC
Confidence 344556667788888888778999999999987777777777777765543
No 295
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=24.92 E-value=4.4e+02 Score=23.15 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=62.2
Q ss_pred CCeEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhC---CCeEEEEEECCCCHHH----HHHCCCC
Q 029208 92 PNMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEH---PEIVFLKVNFDENKPM----CKSLNVK 164 (197)
Q Consensus 92 ~~~~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~---~~v~~~~Vd~d~~~~l----~~~~~v~ 164 (197)
|.+..+...+-|+..-.+ -+...+|-|.-.--+.-.++...++++|+.+ +++.++.||-|+.+-+ .+.|+|.
T Consensus 249 ptlrkl~~~~m~e~Wedd-~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Id 327 (383)
T PF01216_consen 249 PTLRKLRPEDMFETWEDD-IDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGID 327 (383)
T ss_dssp -SEEE--GGGHHHHHHSS-SSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-
T ss_pred hHhhhCChhhhhhhhccc-CCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCcc
Confidence 556666655555555444 3677888899999999999999999999975 4599999999988754 3556654
Q ss_pred -cccEEEEEeCCCceE--EEeec---CccHHHHHhhhc
Q 029208 165 -VLPYFHFYRGAHGQL--ESFSC---SLAKVMLRILIQ 196 (197)
Q Consensus 165 -~~Pt~~~~~~g~~~~--~~~~g---~~~~~~l~~fI~ 196 (197)
.-|.+=+.+-....- -...+ ..+.+++..||.
T Consensus 328 l~~PqIGvVnvtdadsvW~dm~d~~d~pt~~~LedWie 365 (383)
T PF01216_consen 328 LSRPQIGVVNVTDADSVWMDMDDDDDLPTAEELEDWIE 365 (383)
T ss_dssp TTS-EEEEEETTTSEEEEC-STTTSS---HHHHHHHHH
T ss_pred ccCCceeEEeccccccchhccCCcccCCcHHHHHHHHH
Confidence 359988887554322 22222 134577777773
No 296
>KOG2990 consensus C2C2-type Zn-finger protein [Function unknown]
Probab=24.60 E-value=1.2e+02 Score=25.64 Aligned_cols=35 Identities=17% Similarity=0.509 Sum_probs=22.1
Q ss_pred ChHHHHHHHHhcCCCeEEEEEEc---CCChhHHhhHHH
Q 029208 99 STQEFLEALSQAGDRLVIVEFYG---TWCASCRALFPK 133 (197)
Q Consensus 99 ~~~~~~~~l~~~~~k~vlv~F~a---~wC~~Ck~~~p~ 133 (197)
+...+.+.-........||-|-- -||.-|+.+...
T Consensus 27 g~h~lrerarKi~~gilvIRFEMPynIWC~gC~nhIgm 64 (317)
T KOG2990|consen 27 GTHALRERARKIDQGILVIRFEMPYNIWCDGCKNHIGM 64 (317)
T ss_pred cchhHHHHHHhhccceEEEEEecccchhhccHHHhhhc
Confidence 33334333333345778888855 499999987654
No 297
>PHA02513 V1 structural protein V1; Reviewed
Probab=23.02 E-value=92 Score=22.50 Aligned_cols=37 Identities=22% Similarity=0.453 Sum_probs=29.1
Q ss_pred ChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCCCe
Q 029208 99 STQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEI 144 (197)
Q Consensus 99 ~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~~v 144 (197)
+.|+..+..+- ||.+|.+.-..-...|-+++++.+.+
T Consensus 23 t~eqi~ea~ki---------f~qtwdgnii~sa~~fveva~~npkl 59 (135)
T PHA02513 23 TKEQIAEATKI---------FYQTWDGNIISSARRFVEVAKANPKL 59 (135)
T ss_pred CHHHHHHHHHH---------HHHhcCchHHHHHHHHHHHHhcCCcc
Confidence 34555555543 99999999999999999999988764
No 298
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=22.76 E-value=1.8e+02 Score=18.12 Aligned_cols=51 Identities=8% Similarity=0.088 Sum_probs=31.2
Q ss_pred EEEEcCCChhHHhhHHHHHHHHHhCCCeEEEEEECC----CCHHHHHHCCCCcccEEE
Q 029208 117 VEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFD----ENKPMCKSLNVKVLPYFH 170 (197)
Q Consensus 117 v~F~a~wC~~Ck~~~p~l~~la~~~~~v~~~~Vd~d----~~~~l~~~~~v~~~Pt~~ 170 (197)
-.|+.+.|+.|++..-.+.+..-. +....++.. ..+.+.+......+|++.
T Consensus 3 ~Ly~~~~s~~s~~v~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~ 57 (76)
T cd03053 3 KLYGAAMSTCVRRVLLCLEEKGVD---YELVPVDLTKGEHKSPEHLARNPFGQIPALE 57 (76)
T ss_pred EEEeCCCChhHHHHHHHHHHcCCC---cEEEEeCccccccCCHHHHhhCCCCCCCEEE
Confidence 345566699998887766665322 444455543 124555555677899875
No 299
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=22.24 E-value=5.2e+02 Score=22.36 Aligned_cols=92 Identities=10% Similarity=0.020 Sum_probs=44.1
Q ss_pred eEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhHHhhHHHHHHHHHhCC-CeEEEEEECCCCHHHHH-HCCCCcccEEEE
Q 029208 94 MIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP-EIVFLKVNFDENKPMCK-SLNVKVLPYFHF 171 (197)
Q Consensus 94 ~~~i~~~~~~~~~l~~~~~k~vlv~F~a~wC~~Ck~~~p~l~~la~~~~-~v~~~~Vd~d~~~~l~~-~~~v~~~Pt~~~ 171 (197)
++...+.++....-.+.++++.+|+|.+.- ++ .+++..+.-. .+.+.+.= ....+++- .-..+..|.+.+
T Consensus 135 iI~pi~enQ~~fehlq~Rhq~ffVf~Gtge-~P------L~d~fidAASe~~~~a~Ff-SaseeVaPe~~~~kempaV~V 206 (468)
T KOG4277|consen 135 IIEPINENQIEFEHLQARHQPFFVFFGTGE-GP------LFDAFIDAASEKFSVARFF-SASEEVAPEENDAKEMPAVAV 206 (468)
T ss_pred eeeecChhHHHHHHHhhccCceEEEEeCCC-Cc------HHHHHHHHhhhheeeeeee-ccccccCCcccchhhccceEE
Confidence 444444433332222336889999887543 22 3333322211 12222221 12223332 234677899999
Q ss_pred EeCCCceEEEeecCccHHHHHhhhc
Q 029208 172 YRGAHGQLESFSCSLAKVMLRILIQ 196 (197)
Q Consensus 172 ~~~g~~~~~~~~g~~~~~~l~~fI~ 196 (197)
|++.. -.+...-+.+++.+||+
T Consensus 207 FKDet---f~i~de~dd~dLseWin 228 (468)
T KOG4277|consen 207 FKDET---FEIEDEGDDEDLSEWIN 228 (468)
T ss_pred Eccce---eEEEecCchhHHHHHHh
Confidence 98753 22222345566677764
No 300
>PRK10853 putative reductase; Provisional
Probab=21.05 E-value=1.2e+02 Score=21.86 Aligned_cols=22 Identities=9% Similarity=-0.014 Sum_probs=17.4
Q ss_pred EEEEEcCCChhHHhhHHHHHHH
Q 029208 116 IVEFYGTWCASCRALFPKLCRT 137 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~l 137 (197)
+..|+-+.|..|++....+++-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~ 23 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ 23 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc
Confidence 3457789999999988877753
No 301
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases
Probab=20.80 E-value=1.3e+02 Score=23.65 Aligned_cols=26 Identities=23% Similarity=0.556 Sum_probs=19.3
Q ss_pred ChhHHhhHHHHHHHHHhCCCeEEEEEECC
Q 029208 124 CASCRALFPKLCRTAEEHPEIVFLKVNFD 152 (197)
Q Consensus 124 C~~Ck~~~p~l~~la~~~~~v~~~~Vd~d 152 (197)
|+.|+++.-. +++..+++.++..|-.
T Consensus 157 CGaC~ewL~K---IAe~np~f~v~mFd~t 182 (193)
T PF14421_consen 157 CGACKEWLRK---IAEANPDFRVYMFDDT 182 (193)
T ss_pred chHHHHHHHH---HHHhCCCeEEEEecCC
Confidence 9999887554 5557788888887754
No 302
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=20.30 E-value=1.5e+02 Score=21.59 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=17.5
Q ss_pred EEEEEcCCChhHHhhHHHHHHH
Q 029208 116 IVEFYGTWCASCRALFPKLCRT 137 (197)
Q Consensus 116 lv~F~a~wC~~Ck~~~p~l~~l 137 (197)
+..|+-+.|..|++....+++-
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS 24 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 4557789999999988877654
Done!