BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029209
         (197 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2F7F|A Chain A, Crystal Structure Of Enterococcus Faecalis Putative
           Nicotinate Phosphoribosyltransferase, New York
           Structural Genomics Consortium
          Length = 494

 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 98/189 (51%), Gaps = 17/189 (8%)

Query: 3   ITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQ-----PRI 57
           I ASNDL+E T+  L  Q  ++D +G+GT L+T Y Q ALG VFKLV I  +       I
Sbjct: 289 IYASNDLDENTILNLKMQKSKIDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKDTI 348

Query: 58  KLSEDVSKVSIPCKKRSYRLYGK-----EGYPLVDIMTGENEPPPKVGERILCRHPFNES 112
           KLS +  KV+ P KK+ +R+  K     EG    D +T  NE  P+  E I   HP +  
Sbjct: 349 KLSSNAEKVTTPGKKQVWRITRKSDKKSEG----DYVTLWNE-DPRQEEEIYMFHPVHTF 403

Query: 113 KRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYK 172
              YV   +   +L+  +     KR  +LPTL + ++   + L+ +  ++ R LNP  Y 
Sbjct: 404 INKYVRDFEARPVLQDIFV--EGKRVYELPTLDEIKQYAKENLDSLHEEYKRDLNPQKYP 461

Query: 173 VSVSAKLYD 181
           V +S   ++
Sbjct: 462 VDLSTDCWN 470


>pdb|1VLP|A Chain A, Crystal Structure Of A Putative Nicotinate
           Phosphoribosyltransferase (Yor209c, Npt1) From
           Saccharomyces Cerevisiae At 1.75 A Resolution
 pdb|1VLP|B Chain B, Crystal Structure Of A Putative Nicotinate
           Phosphoribosyltransferase (Yor209c, Npt1) From
           Saccharomyces Cerevisiae At 1.75 A Resolution
 pdb|1VLP|C Chain C, Crystal Structure Of A Putative Nicotinate
           Phosphoribosyltransferase (Yor209c, Npt1) From
           Saccharomyces Cerevisiae At 1.75 A Resolution
 pdb|1VLP|D Chain D, Crystal Structure Of A Putative Nicotinate
           Phosphoribosyltransferase (Yor209c, Npt1) From
           Saccharomyces Cerevisiae At 1.75 A Resolution
          Length = 441

 Score = 29.6 bits (65), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 11/74 (14%)

Query: 3   ITASNDLNEE---TLDALNKQGHEVDAFGIGTYLVTCYAQAA--------LGCVFKLVEI 51
           I  S+ LN E   T     K+   +  FGIGT     + + +        L  V KL+E+
Sbjct: 336 ICYSDSLNVEKAITYSHAAKENGXLATFGIGTNFTNDFRKKSEPQVKSEPLNIVIKLLEV 395

Query: 52  NKQPRIKLSEDVSK 65
           N    IK+S+++ K
Sbjct: 396 NGNHAIKISDNLGK 409


>pdb|1CHK|A Chain A, Streptomyces N174 Chitosanase Ph5.5 298k
 pdb|1CHK|B Chain B, Streptomyces N174 Chitosanase Ph5.5 298k
          Length = 238

 Score = 28.9 bits (63), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 14  LDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKR 73
           L AL K        G+GT     +A AA   VF+  + +++ R+     VS+     K  
Sbjct: 78  LPALKKVNGSASHSGLGTPFTKDWATAAKDTVFQQAQNDERDRVYFDPAVSQ----AKAD 133

Query: 74  SYRLYGKEGYPLVDIMTGENEPPPKVG 100
             R  G+  Y    +M G    P   G
Sbjct: 134 GLRALGQFAYYDAIVMHGPGNDPTSFG 160


>pdb|3OS4|A Chain A, The Crystal Structure Of Nicotinate
           Phosphoribosyltransferase From Yersinia Pestis
 pdb|3OS4|B Chain B, The Crystal Structure Of Nicotinate
           Phosphoribosyltransferase From Yersinia Pestis
          Length = 407

 Score = 27.7 bits (60), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 26  AFGIGTYLVTCYAQAA--LGCVFKLVEINKQPRIKLSE 61
            FGIGT L TC       L  V KLVE N +P  KLS+
Sbjct: 336 VFGIGTRL-TCDIPDVKPLNIVIKLVECNDKPVAKLSD 372


>pdb|3OC9|A Chain A, Crystal Structure Of Putative Udp-N-Acetylglucosamine
           Pyrophosphorylase From Entamoeba Histolytica
          Length = 405

 Score = 27.3 bits (59), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 10  NEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCV 45
           NEET++ +N    E   FG+ +  + C+ Q  L  V
Sbjct: 101 NEETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVV 136


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,023,081
Number of Sequences: 62578
Number of extensions: 241454
Number of successful extensions: 546
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 541
Number of HSP's gapped (non-prelim): 6
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)