Query 029209
Match_columns 197
No_of_seqs 136 out of 1118
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 09:15:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029209.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029209hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02885 nicotinate phosphorib 100.0 1.8E-56 4E-61 420.5 20.7 197 1-197 349-545 (545)
2 PRK09243 nicotinate phosphorib 100.0 5.3E-46 1.2E-50 345.1 15.5 174 1-179 287-464 (464)
3 TIGR01513 NAPRTase_put putativ 100.0 3.2E-44 6.9E-49 331.5 16.2 166 1-179 278-443 (443)
4 PRK12484 nicotinate phosphorib 100.0 1.6E-43 3.4E-48 326.9 18.0 162 1-189 280-441 (443)
5 PRK09198 putative nicotinate p 99.9 1.2E-22 2.7E-27 188.6 12.1 120 1-154 330-462 (463)
6 COG1488 PncB Nicotinic acid ph 99.9 7.5E-23 1.6E-27 187.7 7.1 110 1-152 293-405 (405)
7 PHA02594 nadV nicotinamide pho 99.9 5E-21 1.1E-25 178.1 12.3 123 1-154 335-469 (470)
8 cd01401 PncB_like Nicotinate p 99.8 3.1E-21 6.7E-26 175.6 7.7 67 1-67 304-377 (377)
9 PRK05321 nicotinate phosphorib 99.8 7.1E-21 1.5E-25 174.4 8.0 72 2-73 309-383 (400)
10 KOG2511 Nicotinic acid phospho 99.8 2.6E-21 5.7E-26 172.6 4.3 117 3-133 304-420 (420)
11 TIGR01514 NAPRTase nicotinate 99.8 1.1E-20 2.3E-25 172.8 7.7 67 1-67 307-377 (394)
12 PF04095 NAPRTase: Nicotinate 99.7 3.2E-18 7E-23 147.5 2.2 78 1-78 149-241 (245)
13 PRK07188 nicotinate phosphorib 99.5 2.9E-14 6.2E-19 129.1 7.6 68 1-74 281-348 (352)
14 cd01569 PBEF_like pre-B-cell c 99.3 1E-11 2.2E-16 114.3 7.5 59 1-59 327-395 (407)
15 PRK08662 nicotinate phosphorib 99.2 8.6E-12 1.9E-16 112.7 6.3 68 1-74 262-329 (343)
16 cd01571 NAPRTase_B Nicotinate 90.7 0.2 4.4E-06 44.7 2.8 23 38-60 278-300 (302)
17 PRK07114 keto-hydroxyglutarate 71.9 3.8 8.2E-05 35.2 3.0 34 1-36 159-194 (222)
18 PRK13307 bifunctional formalde 62.8 8.7 0.00019 35.8 3.6 36 1-38 331-366 (391)
19 cd04730 NPD_like 2-Nitropropan 60.2 8.7 0.00019 31.9 2.9 40 2-43 158-198 (236)
20 PRK07028 bifunctional hexulose 53.2 18 0.00039 33.5 4.0 36 1-38 163-198 (430)
21 COG3693 XynA Beta-1,4-xylanase 50.3 10 0.00022 34.8 1.8 24 13-36 209-232 (345)
22 cd04740 DHOD_1B_like Dihydroor 42.7 30 0.00065 30.0 3.6 34 1-36 232-266 (296)
23 cd01473 vWA_CTRP CTRP for CS 35.7 56 0.0012 26.8 3.9 30 2-31 112-149 (192)
24 TIGR02151 IPP_isom_2 isopenten 35.0 33 0.00071 30.9 2.6 34 1-36 255-289 (333)
25 cd02931 ER_like_FMN Enoate red 33.7 41 0.00088 30.9 3.1 37 1-38 306-343 (382)
26 smart00633 Glyco_10 Glycosyl h 33.4 54 0.0012 28.0 3.6 25 11-35 139-163 (254)
27 smart00500 SFM Splicing Factor 33.3 31 0.00067 22.4 1.6 21 10-30 3-23 (44)
28 PF00733 Asn_synthase: Asparag 33.2 29 0.00062 28.4 1.9 34 2-35 21-56 (255)
29 cd01469 vWA_integrins_alpha_su 33.2 66 0.0014 25.6 3.9 32 2-33 107-144 (177)
30 PRK13685 hypothetical protein; 33.1 48 0.001 29.5 3.3 31 2-32 197-239 (326)
31 PRK02240 GTP cyclohydrolase II 32.3 57 0.0012 28.9 3.6 29 3-31 58-90 (254)
32 cd01452 VWA_26S_proteasome_sub 30.5 68 0.0015 26.7 3.7 24 12-35 127-150 (187)
33 PRK02655 psbI photosystem II r 30.3 27 0.00058 22.1 0.9 13 59-73 24-36 (38)
34 PRK10605 N-ethylmaleimide redu 29.9 52 0.0011 30.0 3.1 35 2-37 294-328 (362)
35 TIGR02129 hisA_euk phosphoribo 29.8 57 0.0012 28.7 3.2 34 1-36 77-110 (253)
36 cd04735 OYE_like_4_FMN Old yel 28.7 22 0.00049 32.1 0.5 34 2-37 286-320 (353)
37 cd00381 IMPDH IMPDH: The catal 28.6 90 0.002 28.0 4.4 38 1-40 198-236 (325)
38 PRK07259 dihydroorotate dehydr 28.0 55 0.0012 28.6 2.8 34 1-36 235-269 (301)
39 cd01453 vWA_transcription_fact 27.9 69 0.0015 26.0 3.2 20 13-32 128-147 (183)
40 cd02929 TMADH_HD_FMN Trimethyl 27.2 55 0.0012 29.9 2.8 35 2-37 291-326 (370)
41 PLN02411 12-oxophytodienoate r 27.0 60 0.0013 30.0 3.0 36 2-38 315-350 (391)
42 PTZ00441 sporozoite surface pr 25.8 92 0.002 30.7 4.1 31 2-32 153-189 (576)
43 TIGR03151 enACPred_II putative 25.7 89 0.0019 27.8 3.8 37 1-39 162-199 (307)
44 TIGR00640 acid_CoA_mut_C methy 25.0 1.1E+02 0.0023 24.0 3.7 32 2-34 86-117 (132)
45 cd04727 pdxS PdxS is a subunit 24.9 94 0.002 27.9 3.7 33 4-38 200-233 (283)
46 cd01467 vWA_BatA_type VWA BatA 23.6 1E+02 0.0023 23.9 3.4 31 2-32 106-143 (180)
47 TIGR01037 pyrD_sub1_fam dihydr 23.4 76 0.0017 27.6 2.9 33 2-36 236-269 (300)
48 PRK09722 allulose-6-phosphate 23.0 1.1E+02 0.0025 26.3 3.8 31 2-34 171-202 (229)
49 COG2846 Regulator of cell morp 22.6 68 0.0015 27.7 2.3 41 148-188 85-129 (221)
50 CHL00024 psbI photosystem II p 22.6 47 0.001 20.8 1.0 13 59-73 24-36 (36)
51 cd01465 vWA_subgroup VWA subgr 22.5 1.1E+02 0.0025 23.3 3.4 29 3-31 101-139 (170)
52 cd01464 vWA_subfamily VWA subf 21.9 89 0.0019 24.7 2.8 32 2-33 111-149 (176)
53 TIGR01303 IMP_DH_rel_1 IMP deh 21.8 54 0.0012 31.3 1.7 49 1-49 267-321 (475)
54 PRK14057 epimerase; Provisiona 21.7 1.3E+02 0.0028 26.5 3.9 33 1-35 194-226 (254)
55 PF01645 Glu_synthase: Conserv 21.7 69 0.0015 29.7 2.3 38 1-45 275-313 (368)
56 cd01471 vWA_micronemal_protein 21.5 1.1E+02 0.0023 24.3 3.1 31 3-33 113-149 (186)
57 cd01458 vWA_ku Ku70/Ku80 N-ter 21.3 98 0.0021 25.5 3.0 30 3-32 132-173 (218)
58 PF13519 VWA_2: von Willebrand 20.9 1.2E+02 0.0026 22.7 3.2 33 2-34 103-139 (172)
59 PF00331 Glyco_hydro_10: Glyco 20.8 66 0.0014 28.7 1.9 27 12-38 192-218 (320)
60 PRK07226 fructose-bisphosphate 20.5 76 0.0017 27.4 2.2 36 1-38 197-239 (267)
61 PRK10415 tRNA-dihydrouridine s 20.5 1.3E+02 0.0027 27.0 3.7 34 2-36 196-230 (321)
62 cd05009 SIS_GlmS_GlmD_2 SIS (S 20.3 15 0.00032 28.0 -2.1 43 13-60 5-47 (153)
No 1
>PLN02885 nicotinate phosphoribosyltransferase
Probab=100.00 E-value=1.8e-56 Score=420.53 Aligned_cols=197 Identities=90% Similarity=1.458 Sum_probs=185.7
Q ss_pred CEEEEeCCCCHHHHHHHHhCCCcccEEeecCcccccCCCCccceEEEEEEEcCcceeeccCCCCccCCCCceeEEEeecC
Q 029209 1 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGK 80 (197)
Q Consensus 1 vkI~~S~~Lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~KqVyR~~d~ 80 (197)
+||+|||||||++|.+|.++|++||+|||||+|+||.++|+||||||||+++|+|++|+|++++|.|+||+|||||+||+
T Consensus 349 ~kIv~Sn~Lde~~i~~L~~~g~~id~fGVGT~LvT~~~~p~l~~VyKLVe~~g~p~~KlS~~~~K~t~PG~K~vyR~~~~ 428 (545)
T PLN02885 349 MSITASNDINEETLDALNKQGHEIDAFGIGTHLVTCYAQPALGCVYKLVEINGQPRIKLSEDVEKVTIPCKKRCYRLYGK 428 (545)
T ss_pred eEEEEeCCCCHHHHHHHHHcCCCccEEecCCccccCCCCCCCceEEEEEEECCeeeeEecCCCCCccCCcceEEEEEEcC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCceeEEEEecCCCCCCCCCcceeecCCCCccceeeecCCccccceeehccCCccccCCCCCCHHHHHHHHHHHHhcCCh
Q 029209 81 EGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRP 160 (197)
Q Consensus 81 ~g~~~~D~i~l~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~e~LL~~v~~~G~~~~~~~~psl~eiR~~~~~~l~~L~~ 160 (197)
+|++.+|+|++.+|+++..++++.|+||.++|++..+.++++++||+++|++|+...++++|+|++||+|+++||++|||
T Consensus 429 ~g~~~~D~i~l~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Ll~~~~~~g~g~~~~~~~~l~~~r~~~~~~l~~l~~ 508 (545)
T PLN02885 429 EGYPLVDLMTGENEPPPKVGERILCRHPFNESKRAYVVPQRVEELLKCYWDGSSGKPREELPSLKEIRERCMKQLERMRP 508 (545)
T ss_pred CCCEEEEEEecCCCCCCCCCCceEEeCCccchheeeeccccHHhhhHHHeECCCCcCcCCCCCHHHHHHHHHHHHhhCCH
Confidence 89999999999999766678899999999999999999999999999999994432236899999999999999999999
Q ss_pred hhhhccCCcccccccCHHHHHHHHHHHHccCCCCCCC
Q 029209 161 DHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ 197 (197)
Q Consensus 161 ~~~rl~~P~~Y~V~lS~~L~~l~~~L~~~~~~~~~~~ 197 (197)
+++|+.||++|+|++|++|++++++||.++++++|++
T Consensus 509 ~~~r~~~p~~y~V~~s~~l~~~~~~l~~~~~~~~~~~ 545 (545)
T PLN02885 509 DHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ 545 (545)
T ss_pred HHHhccCCccceeccCHHHHHHHHHHHHhcCccccCC
Confidence 9999999999999999999999999999988877753
No 2
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=100.00 E-value=5.3e-46 Score=345.06 Aligned_cols=174 Identities=38% Similarity=0.533 Sum_probs=165.9
Q ss_pred CEEEEeCCCCHHHHHHHHhCCCcccEEeecCcccccCCCCccceEEEEEEEcCc----ceeeccCCCCccCCCCceeEEE
Q 029209 1 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQ----PRIKLSEDVSKVSIPCKKRSYR 76 (197)
Q Consensus 1 vkI~~S~~Lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vyKlv~~~g~----p~~K~S~~~~K~t~PG~KqVyR 76 (197)
+||++||||||++|.+|..+|+++|+|||||+|+|+.++|++|+|||||+++|. |++|+|++++|.|+||+|+|||
T Consensus 287 ~kIi~S~gLde~~i~~l~~~g~~id~fGvGt~L~~~~~~~~l~~v~Klv~~~g~g~w~p~~K~s~~~~K~t~pG~k~v~R 366 (464)
T PRK09243 287 TKIVASNDLDEYTIASLKLQGAPIDGFGVGTKLVTGSDAPALGGVYKLVAIEGEGGMIPKIKLSNSPEKVTTPGRKQVYR 366 (464)
T ss_pred cEEEEeCCCCHHHHHHHHhCCCCceEEEcCccccCCCCCCccceEEEEeEecCCCCccceeecccCCCCcCCCcceEEEE
Confidence 699999999999999999999999999999999999999999999999999985 9999999999999999999999
Q ss_pred eecCCCceeEEEEecCCCCCCCCCcceeecCCCCccceeeecCCccccceeehccCCccccCCCCCCHHHHHHHHHHHHh
Q 029209 77 LYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLE 156 (197)
Q Consensus 77 ~~d~~g~~~~D~i~l~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~e~LL~~v~~~G~~~~~~~~psl~eiR~~~~~~l~ 156 (197)
+||.+|++.+|+|++.+|+ + ++++.|+||.++|++..+.++.+++||+++|++|+++ .+.|++++||+|+++||+
T Consensus 367 ~~~~~~~~~~d~i~~~~e~-~--~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~G~~~--~~~~~l~~~r~~~~~~l~ 441 (464)
T PRK09243 367 IYDKGGKAEADVITLADEE-E--EEPLKMFHPVHTYKSKTVKNFDAEPLLVPVMENGKRV--YELPSLEEIRAYAAAQLA 441 (464)
T ss_pred EEcCCCCcceEEEeccCCC-c--cccceeecccchhhhhcccccchhhhhHHHhcCCEEc--CCCCCHHHHHHHHHHHHH
Confidence 9987789999999999985 3 6778999999999999999999999999999999987 578999999999999999
Q ss_pred cCChhhhhccCCcccccccCHHH
Q 029209 157 QMRPDHMRRLNPTPYKVSVSAKL 179 (197)
Q Consensus 157 ~L~~~~~rl~~P~~Y~V~lS~~L 179 (197)
+||++++|+.||++|+|.+|++|
T Consensus 442 ~l~~~~~~l~~p~~y~v~~s~~l 464 (464)
T PRK09243 442 SLPEEYKRLLNPHAYPVDLSQAL 464 (464)
T ss_pred hCCHHHhcccCCCceeEEecCCC
Confidence 99999999999999999999875
No 3
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase. Most members of this family are Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cutoffs.
Probab=100.00 E-value=3.2e-44 Score=331.45 Aligned_cols=166 Identities=38% Similarity=0.596 Sum_probs=153.9
Q ss_pred CEEEEeCCCCHHHHHHHHhCCCcccEEeecCcccccCCCCccceEEEEEEEcCcceeeccCCCCccCCCCceeEEEeecC
Q 029209 1 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGK 80 (197)
Q Consensus 1 vkI~~S~~Lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~KqVyR~~d~ 80 (197)
+||++||||||++|.+|.++|+++|+|||||+|+|+.++|++++|||||++||+|++|+|++++|.|+||+|||||+|+.
T Consensus 278 vkIi~S~gLde~~i~~l~~~g~~~d~fGvGt~L~t~~~~~~l~~v~Klv~~~G~pv~K~sd~~~K~t~pG~k~v~R~~~~ 357 (443)
T TIGR01513 278 VKIVVSNDLDENSIAALKAEGAPIDVYGVGTSLVTASDAPALGGVYKLVAYEGRPVMKLSENPEKSTLPGRKQVFRLYDA 357 (443)
T ss_pred cEEEEeCCCCHHHHHHHHHCCCceeEEecCcceeecCCCCccceEEEEEeECCeeeEecCCCCcCccCCcceEEEEEeCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCceeEEEEecCCCCCCCCCcceeecCCCCccceeeecCCccccceeehccCCccccCCCCCCHHHHHHHHHHHHhcCCh
Q 029209 81 EGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRP 160 (197)
Q Consensus 81 ~g~~~~D~i~l~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~e~LL~~v~~~G~~~~~~~~psl~eiR~~~~~~l~~L~~ 160 (197)
+|.+.+|+|++.+|+ +..+.+..|+||. ...++||+++|++|+++ .+.||+++||+|+++||++||+
T Consensus 358 ~g~~~~d~i~~~~e~-~~~~~~~~~~~~~----------~~~~~ll~~v~~~G~~~--~~~~~l~eir~~~~~~l~~l~~ 424 (443)
T TIGR01513 358 TGKFLGDELTLADEP-IEDLNQEKCTPVF----------APVEPLLRLVMKNGQRV--RPLPSLAEIRARAREQLSKLPP 424 (443)
T ss_pred CCCeeeEEEEecCCC-CccccceeeecCC----------cchhcchhheeECCEEe--CCCCCHHHHHHHHHHHHHhCCH
Confidence 789999999999986 3455667788775 34689999999999986 5678999999999999999999
Q ss_pred hhhhccCCcccccccCHHH
Q 029209 161 DHMRRLNPTPYKVSVSAKL 179 (197)
Q Consensus 161 ~~~rl~~P~~Y~V~lS~~L 179 (197)
+++|+.||++|+|.+|++|
T Consensus 425 ~~~rl~~p~~y~v~~s~~l 443 (443)
T TIGR01513 425 EYLRLLNPHVYPVSLSPRL 443 (443)
T ss_pred HHhcccCCccceeeccCCC
Confidence 9999999999999999875
No 4
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.6e-43 Score=326.94 Aligned_cols=162 Identities=31% Similarity=0.437 Sum_probs=150.2
Q ss_pred CEEEEeCCCCHHHHHHHHhCCCcccEEeecCcccccCCCCccceEEEEEEEcCcceeeccCCCCccCCCCceeEEEeecC
Q 029209 1 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGK 80 (197)
Q Consensus 1 vkI~~S~~Lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~KqVyR~~d~ 80 (197)
++|++||||||++|.+|.++|+++|+|||||+|+|+.++|++++|||||+++|+|++|+|+ +|.|+||+|||||+|+.
T Consensus 280 ~kIi~S~gLde~~i~~l~~~g~~id~fGvGt~L~~~~~~p~l~~v~Klv~~~g~pv~K~s~--~K~t~pG~k~v~R~~~~ 357 (443)
T PRK12484 280 VKIVASGGLDEYRIAALLAAGAPIDGFGVGTRLGVAADAPVLDSAYKLVAYEGRGVTKLSS--GKVTYPGRKQVFRLYEH 357 (443)
T ss_pred cEEEEeCCCCHHHHHHHHHCCCcCeEEeeCcccccCCCCCccceEEEEEEecCCCeEEeCC--CCCCCCCceEEEEEcCC
Confidence 6899999999999999999999999999999999999999999999999999999999987 99999999999999974
Q ss_pred CCceeEEEEecCCCCCCCCCcceeecCCCCccceeeecCCccccceeehccCCccccCCCCCCHHHHHHHHHHHHhcCCh
Q 029209 81 EGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRP 160 (197)
Q Consensus 81 ~g~~~~D~i~l~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~e~LL~~v~~~G~~~~~~~~psl~eiR~~~~~~l~~L~~ 160 (197)
|.+.+|+|++.+|+.+ .+ .++||+++|++|+++ .+.|++++||+|++++|++||+
T Consensus 358 -~~~~~d~i~~~~e~~~-~~---------------------~~~ll~~v~~~G~~~--~~~~~l~eir~~~~~~l~~l~~ 412 (443)
T PRK12484 358 -GTACGDVIGLHTENIP-DG---------------------REPLLVPVMTNGRRI--QHAPTLDGARDWCEAQLAALPP 412 (443)
T ss_pred -CCceeEEEEecCCCCC-Cc---------------------ccchhhhheECCEEe--CCCCCHHHHHHHHHHHHHhCCH
Confidence 4478999999998533 21 268999999999986 4688999999999999999999
Q ss_pred hhhhccCCcccccccCHHHHHHHHHHHHc
Q 029209 161 DHMRRLNPTPYKVSVSAKLYDFIHFLWLN 189 (197)
Q Consensus 161 ~~~rl~~P~~Y~V~lS~~L~~l~~~L~~~ 189 (197)
+++|+.||++|+|.+|++|++++++|+++
T Consensus 413 ~~~~l~~p~~y~v~~s~~l~~~~~~l~~~ 441 (443)
T PRK12484 413 EARRLVDPVAVSVTLSGELARLRHADTAE 441 (443)
T ss_pred HHHhccCCccceeeeCHHHHHHHHHHHHh
Confidence 99999999999999999999999999964
No 5
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional
Probab=99.88 E-value=1.2e-22 Score=188.61 Aligned_cols=120 Identities=17% Similarity=0.241 Sum_probs=101.4
Q ss_pred CEEEEeCCCCHHHHHH----HHhCCCccc--EEeecCcccccCCCCccceEEEEEEE--cC--cceee---ccCCCCccC
Q 029209 1 MSITASNDLNEETLDA----LNKQGHEVD--AFGIGTYLVTCYAQAALGCVFKLVEI--NK--QPRIK---LSEDVSKVS 67 (197)
Q Consensus 1 vkI~~S~~Lde~~i~~----l~~~g~~id--~fGVGT~l~t~~~~p~l~~vyKlv~~--~g--~p~~K---~S~~~~K~t 67 (197)
|+|++||||||++|.+ |.++|+++| +|||||+|.++.+.|++++|||+|++ +| +|++| .|. +|.|
T Consensus 330 v~Ii~s~glde~~i~~il~~l~~~G~~~dni~FGvGt~l~~~~~r~t~~~a~Kl~~~~~~G~~~~v~K~P~t~~--gK~S 407 (463)
T PRK09198 330 VGVIQGDGITLDSIEAILEALKAKGFAAENIVFGMGGALLQYVNRDTQGFAMKASAIEVNGEWRDIFKDPITDQ--GKKS 407 (463)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHhCCCccccceEecCcccccCCCCCccCceEEEEEEeeCCccceeeccCcCCC--CCcC
Confidence 6899999999999999 778999999 99999999999999999999999965 65 49998 565 8999
Q ss_pred CCCceeEEEeecCCCceeEEEEecCCCCCCCCCcceeecCCCCccceeeecCCccccceeehccCCccccCCCCCCHHHH
Q 029209 68 IPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDT 147 (197)
Q Consensus 68 ~PG~KqVyR~~d~~g~~~~D~i~l~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~e~LL~~v~~~G~~~~~~~~psl~ei 147 (197)
.||+|+|||. + |.. |.+.+.++.. . .++||++||++|+++. ..++++|
T Consensus 408 ~~G~k~v~r~-~--~~~--~~v~~~~~~~--~----------------------~~~lL~~v~~~G~l~~---~~~l~ei 455 (463)
T PRK09198 408 KKGRLKLIKD-N--GEY--RTVDLDEAGD--E----------------------NDDLLQTVFENGKLLV---EYSLAEI 455 (463)
T ss_pred ccceeEEEEc-C--Ccc--eEEeccccCC--C----------------------ccchhhhheeCCEECC---CCCHHHH
Confidence 9999999998 3 533 7776665531 1 2589999999999862 4679999
Q ss_pred HHHHHHH
Q 029209 148 RERCIKQ 154 (197)
Q Consensus 148 R~~~~~~ 154 (197)
|+|+.++
T Consensus 456 R~r~~~~ 462 (463)
T PRK09198 456 RARLHAA 462 (463)
T ss_pred HHHHhhc
Confidence 9999764
No 6
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=99.87 E-value=7.5e-23 Score=187.71 Aligned_cols=110 Identities=35% Similarity=0.435 Sum_probs=92.7
Q ss_pred CEEEEe-CCCCHHHHHHHHhCCCcccEEeecCcccccCCCCccceEEEEEEEcCcceeeccCCCCccCCCCceeEEEeec
Q 029209 1 MSITAS-NDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYG 79 (197)
Q Consensus 1 vkI~~S-~~Lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~KqVyR~~d 79 (197)
++|++| |++||..|..|+.+|+++|+|||||+|+++.+.|++++|||||+++|+|++|+|++ ||.|++||.++
T Consensus 293 ~~Ii~Sdg~lde~~i~~l~~~g~~~d~FGvGT~L~~~~~~~~~~~v~Klvev~g~p~~Kis~~------Pgkk~~~r~~~ 366 (405)
T COG1488 293 VKIIVSDGLLDEKIIALLRAFGARNDAFGVGTNLTTAKPRPPLDIVYKLVEVNGKPVAKISKN------PGKKQVYRSAF 366 (405)
T ss_pred eEEEEeCCcchHHHHHHHHHhCCCccEeccchhhccCCCCCcceeEEEEEEECCccceeecCC------Cccceeecchh
Confidence 589999 99999999999999999999999999999999999999999999999999999973 99999999975
Q ss_pred C--CCceeEEEEecCCCCCCCCCcceeecCCCCccceeeecCCccccceeehccCCccccCCCCCCHHHHHHHHH
Q 029209 80 K--EGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCI 152 (197)
Q Consensus 80 ~--~g~~~~D~i~l~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~e~LL~~v~~~G~~~~~~~~psl~eiR~~~~ 152 (197)
. .+.... ++. ..++||+++|++| ++ +. +|++||+|++
T Consensus 367 ~~~~~~~~~------~~~-------------------------~~~~l~~~~~~~G-~~--~~--~l~~ir~~~~ 405 (405)
T COG1488 367 VRELLVVFG------DEI-------------------------TYEPLLVKVFENG-LL--YD--SLDEIRERAL 405 (405)
T ss_pred hhhhheecc------ccc-------------------------cchhHHHHHHhCC-ee--cC--CHHHHHHhhC
Confidence 1 122111 110 0178999999999 55 23 9999999973
No 7
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional
Probab=99.85 E-value=5e-21 Score=178.08 Aligned_cols=123 Identities=23% Similarity=0.298 Sum_probs=96.3
Q ss_pred CEEEEeCCCCHHHHHH----HHhCC--CcccEEeecCcccccCCCCccceEEEEEEE--cCc--ceeec-cCCCCccCCC
Q 029209 1 MSITASNDLNEETLDA----LNKQG--HEVDAFGIGTYLVTCYAQAALGCVFKLVEI--NKQ--PRIKL-SEDVSKVSIP 69 (197)
Q Consensus 1 vkI~~S~~Lde~~i~~----l~~~g--~~id~fGVGT~l~t~~~~p~l~~vyKlv~~--~g~--p~~K~-S~~~~K~t~P 69 (197)
++|++||||||++|.+ |.++| +++++|||||+|.++.+.|++++|||++++ +|+ |++|. =.+++|.|.|
T Consensus 335 v~Ii~gd~ide~~i~~il~~L~~~G~~a~n~~fGvGt~l~q~~~rdt~g~ayKl~~~~~~G~~~~~~K~Pktd~gK~S~~ 414 (470)
T PHA02594 335 VRLIQGDGITLERINRILTRMKENGFASENVAFGMGGGLLQMVTRDTFKFAMKATAIKINGKWKGVFKNPKTDEGKKSKK 414 (470)
T ss_pred eEEEEcCCCCHHHHHHHHHHHHHCCCCCCcceEecCccceecCCCcccCceEEEEEEecCCceeeeeccCcCCCCCcccc
Confidence 5899999999999999 55799 666799999999999999999999999987 464 66854 1234899999
Q ss_pred CceeEEEeecCCCce-eEEEEecCCCCCCCCCcceeecCCCCccceeeecCCccccceeehccCCccccCCCCCCHHHHH
Q 029209 70 CKKRSYRLYGKEGYP-LVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTR 148 (197)
Q Consensus 70 G~KqVyR~~d~~g~~-~~D~i~l~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~e~LL~~v~~~G~~~~~~~~psl~eiR 148 (197)
|+|+ |.++ +|.+ ..|.+ ..|. + .+ .++||++||+||+++. + +++++||
T Consensus 415 Gr~~--~~~~-~g~~~~~~~~--~~e~-~-~~---------------------~~~lL~~v~~~G~~~~--~-~sl~eiR 463 (470)
T PHA02594 415 GRLA--RVKD-GGSFKTVDGL--EEQS-E-AD---------------------LNDALVTYFDDGKLVR--Y-QSLAEIR 463 (470)
T ss_pred ceeE--EEEc-CCceeEeeec--cccc-c-cc---------------------ccchhheeeECCEECC--C-CCHHHHH
Confidence 9999 4555 5654 34554 3321 1 11 2579999999999872 3 8999999
Q ss_pred HHHHHH
Q 029209 149 ERCIKQ 154 (197)
Q Consensus 149 ~~~~~~ 154 (197)
+|++++
T Consensus 464 ~r~~~~ 469 (470)
T PHA02594 464 ERSDIQ 469 (470)
T ss_pred HHHHhc
Confidence 999876
No 8
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria, archea and funghi.
Probab=99.84 E-value=3.1e-21 Score=175.59 Aligned_cols=67 Identities=33% Similarity=0.430 Sum_probs=64.2
Q ss_pred CE-EEEeCCCCHHHHHHHHh--CCCcccEEeecCcccccCC----CCccceEEEEEEEcCcceeeccCCCCccC
Q 029209 1 MS-ITASNDLNEETLDALNK--QGHEVDAFGIGTYLVTCYA----QAALGCVFKLVEINKQPRIKLSEDVSKVS 67 (197)
Q Consensus 1 vk-I~~S~~Lde~~i~~l~~--~g~~id~fGVGT~l~t~~~----~p~l~~vyKlv~~~g~p~~K~S~~~~K~t 67 (197)
+| |+|||||||++|.+|++ +|+++|+|||||+|+|+.+ +|+||+|||||++||+|++|+|++++|.|
T Consensus 304 ~K~iv~Sd~Lde~~i~~L~~~~~g~~~~~FGIGT~L~~d~~~~~~~~pl~~V~KLv~~~g~P~~KlSd~~~K~t 377 (377)
T cd01401 304 TKTLVFSDGLDVEKALELYEYFKGRIKVSFGIGTNLTNDFGNKEKSTPLNIVIKLVECNGRPVAKISDSPGKNM 377 (377)
T ss_pred CcEEEEcCCCCHHHHHHHHHHHcCCcceeEecCcceecCCCcccCCCCcceEEEEEEECCcceeEecCCCccCC
Confidence 46 99999999999999999 9999999999999999987 89999999999999999999999999975
No 9
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=99.83 E-value=7.1e-21 Score=174.38 Aligned_cols=72 Identities=31% Similarity=0.365 Sum_probs=66.6
Q ss_pred EEEEeCCCCHHHHHHHHhC--CCcccEEeecCcccccC-CCCccceEEEEEEEcCcceeeccCCCCccCCCCcee
Q 029209 2 SITASNDLNEETLDALNKQ--GHEVDAFGIGTYLVTCY-AQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKR 73 (197)
Q Consensus 2 kI~~S~~Lde~~i~~l~~~--g~~id~fGVGT~l~t~~-~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~Kq 73 (197)
+|+|||||||++|.+|.++ |.++|+|||||+|+|+. ++|+||+|||||+++|+|++|+|++++|.|+|.-.-
T Consensus 309 ~Iv~S~~Lde~~i~~L~~~~~~~i~~~fGIGT~Lt~~~~~~p~l~~V~KLv~~~g~P~~KlSd~~~K~t~p~~~~ 383 (400)
T PRK05321 309 TLVFSDGLDFDKALELYRHFKGRIKLSFGIGTNLTNDFPGVKPLNIVIKLVECNGRPVAKLSDSPGKTMCDDPEF 383 (400)
T ss_pred EEEEeCCCCHHHHHHHHHHhcCCCcceEecCcceecCCCCCCCcceEEEEEEECCeeeEEecCCCcccCCCCHHH
Confidence 6999999999999999886 66677999999999999 899999999999999999999999999999887543
No 10
>KOG2511 consensus Nicotinic acid phosphoribosyltransferase [Coenzyme transport and metabolism]
Probab=99.83 E-value=2.6e-21 Score=172.57 Aligned_cols=117 Identities=68% Similarity=1.017 Sum_probs=108.3
Q ss_pred EEEeCCCCHHHHHHHHhCCCcccEEeecCcccccCCCCccceEEEEEEEcCcceeeccCCCCccCCCCceeEEEeecCCC
Q 029209 3 ITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEG 82 (197)
Q Consensus 3 I~~S~~Lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~KqVyR~~d~~g 82 (197)
+.+||+++|.+|..|..||..+|+|||||+|+|| -|+ +.+| ||+|+|+.|.|.||.|.+||++.++|
T Consensus 304 ~~a~N~~ne~ti~~lnkq~~e~~aFGIGTnl~t~-~q~-----------~sqP-iKLseDvtkvSiP~~K~~~RLfg~eG 370 (420)
T KOG2511|consen 304 SDALNVLNEITIDALNKQGGEVDAFGIGTNLTTD-FQK-----------NSQP-IKLSEDVTKVSIPGNKIVIRLFGKEG 370 (420)
T ss_pred EecccchhHHHHHHHHhcCCceeeeccccccccc-ccc-----------ccCC-cccccccceeccccchhheehhccCC
Confidence 5689999999999999999999999999999999 444 6789 99999999999999999999999999
Q ss_pred ceeEEEEecCCCCCCCCCcceeecCCCCccceeeecCCccccceeehccCC
Q 029209 83 YPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGS 133 (197)
Q Consensus 83 ~~~~D~i~l~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~e~LL~~v~~~G 133 (197)
.++.|+..+++|++|..++.+.|.||+. .++.++.|..+++|++.+++.|
T Consensus 371 ~plvdi~~~~~ep~p~~gq~l~~khp~~-~~~~~vip~~ve~llk~~w~~~ 420 (420)
T KOG2511|consen 371 YPLVDISDLENEPPPDPGQVLRVKHPLN-SKRAYVIPQRVEELLKCYWRAG 420 (420)
T ss_pred chhhhHhhccCCCCCCCCceEEeecccc-ccccccchhhhHHHHHHHhccC
Confidence 9999999999999998999999999999 6777777899999999988754
No 11
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase. This model represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primary proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is TIGR01513. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase (see model TIGR01513).
Probab=99.82 E-value=1.1e-20 Score=172.84 Aligned_cols=67 Identities=36% Similarity=0.459 Sum_probs=64.4
Q ss_pred CE-EEEeCCCCHHHHHHHHh--CCCcccEEeecCcccccCC-CCccceEEEEEEEcCcceeeccCCCCccC
Q 029209 1 MS-ITASNDLNEETLDALNK--QGHEVDAFGIGTYLVTCYA-QAALGCVFKLVEINKQPRIKLSEDVSKVS 67 (197)
Q Consensus 1 vk-I~~S~~Lde~~i~~l~~--~g~~id~fGVGT~l~t~~~-~p~l~~vyKlv~~~g~p~~K~S~~~~K~t 67 (197)
+| |+|||||||++|.+|.+ +|+++|+|||||+|+|+.+ +|+||+|||||+++|+|++|+|++++|.|
T Consensus 307 ~K~iv~Sd~Lde~~i~~L~~~~~g~~~d~FGVGT~l~~d~~~~~~l~~V~Klv~~~g~P~~KlSd~~~K~t 377 (394)
T TIGR01514 307 SKIIIFSDSLDVEKAIELSHYFKGRVKASFGIGTNLTNDFGKVEPLNIVIKLVECNGNPVAKLSDSPGKTM 377 (394)
T ss_pred CcEEEEcCCCCHHHHHHHHHHhcCCCceeEecCcceecCCCCCCCcceEEEEEEECCccceEecCCCcccC
Confidence 46 77899999999999999 9999999999999999998 99999999999999999999999999998
No 12
>PF04095 NAPRTase: Nicotinate phosphoribosyltransferase (NAPRTase) family; InterPro: IPR015977 Nicotinate phosphoribosyltransferase (2.4.2.11 from EC) is the rate-limiting enzyme that catalyses the first reaction in the NAD salvage synthesis. This family also contains a number of closely related proteins for which a catalytic activity has not been experimentally demonstrated.; GO: 0004516 nicotinate phosphoribosyltransferase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm; PDB: 3OS4_B 1VLP_C 2F7F_A 1YIR_D 1YBE_B 2H3D_A 2H3B_B 2GVL_B 2IM5_B 2G96_B ....
Probab=99.70 E-value=3.2e-18 Score=147.52 Aligned_cols=78 Identities=47% Similarity=0.604 Sum_probs=67.0
Q ss_pred CEEEEeCCCCHHHHHHHHhCCCc---ccEEeecCcccccCCC---------CccceEEEEEEEcCcceeeccCCCCccCC
Q 029209 1 MSITASNDLNEETLDALNKQGHE---VDAFGIGTYLVTCYAQ---------AALGCVFKLVEINKQPRIKLSEDVSKVSI 68 (197)
Q Consensus 1 vkI~~S~~Lde~~i~~l~~~g~~---id~fGVGT~l~t~~~~---------p~l~~vyKlv~~~g~p~~K~S~~~~K~t~ 68 (197)
++|++||+|||++|.+|.+++.+ +|+|||||+|+|+.+. |++++|||+++++|+|++|+|++++|.|.
T Consensus 149 ~~Ii~Sd~Lde~~i~~l~~~~~~~g~~~~fGVGT~L~t~~~~~~~~~~~K~~~l~~v~Klv~~~~~P~~K~S~~~~K~t~ 228 (245)
T PF04095_consen 149 KKIIASDGLDEEKIEELLEQGAEKGFNDSFGVGTNLVTDFDRPTLGFVYKLPALNIVGKLVEINGQPVIKLSDDSEKGTC 228 (245)
T ss_dssp SEEEEESS-SHHHHHHHHHHHCCTTSEEEEEESHHHHSSCTTTTTTEEEEEEEEEEEEEEEEETTEETTBGGSSTTGSSG
T ss_pred EEEEEeCCCCHHHHHHHHHHhhcccceeEeecCchheeeCCCCccCceeccccceeCCeEEEeCCCCCccCCCCCCCCcC
Confidence 48999999999999999998888 9999999999999999 77788888888999999999999999992
Q ss_pred ---CCceeEEEee
Q 029209 69 ---PCKKRSYRLY 78 (197)
Q Consensus 69 ---PG~KqVyR~~ 78 (197)
++++.+.|.|
T Consensus 229 ~~~~~~~~~k~vf 241 (245)
T PF04095_consen 229 GDPEGIKYLKRVF 241 (245)
T ss_dssp GGHHHHHHHHHHE
T ss_pred CCHHHHHHHHHHh
Confidence 3355555554
No 13
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=99.51 E-value=2.9e-14 Score=129.12 Aligned_cols=68 Identities=22% Similarity=0.352 Sum_probs=58.9
Q ss_pred CEEEEeCCCCHHHHHHHHhCCCcccEEeecCcccccCCCCccceEEEEEEEcCcceeeccCCCCccCCCCceeE
Q 029209 1 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRS 74 (197)
Q Consensus 1 vkI~~S~~Lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~KqV 74 (197)
+||++||||||+.|++|.++|+|||+|||||+|+++. .++..|+|++||+|++|+.. +...+|-.+.+
T Consensus 281 vkI~aSgGine~~I~~~~~~g~piD~~GVGt~l~~~~----~~~t~d~v~~~g~p~aK~Gr--~~~~~~~l~~~ 348 (352)
T PRK07188 281 VKIIVSSGFDAKKIREFEAQNVPVDIYGVGSSLLKIN----IGFTGDAVELNGKKEAKAGR--KYRPNPRLERV 348 (352)
T ss_pred cEEEEeCCCCHHHHHHHHHcCCCccEEecCcccccCc----ccceeeEEEECCEeecccCC--CCCCCccceee
Confidence 6899999999999999999999999999999999985 67777999999999999976 44445554443
No 14
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.
Probab=99.26 E-value=1e-11 Score=114.30 Aligned_cols=59 Identities=22% Similarity=0.371 Sum_probs=53.9
Q ss_pred CEEEEeCCCCHHHHHH----HHhCCCccc--EEeecCcccccCCCCccceEEEEEEE--cC--cceeec
Q 029209 1 MSITASNDLNEETLDA----LNKQGHEVD--AFGIGTYLVTCYAQAALGCVFKLVEI--NK--QPRIKL 59 (197)
Q Consensus 1 vkI~~S~~Lde~~i~~----l~~~g~~id--~fGVGT~l~t~~~~p~l~~vyKlv~~--~g--~p~~K~ 59 (197)
++|++||||||++|.+ |.++|+++| +|||||+|.++.+.|+++||||++++ || .|++|-
T Consensus 327 v~Ii~gd~ide~~i~~Il~~L~~~G~~~dNi~fGvGt~l~q~~~rdt~~~ayK~~~~~~~g~~~~v~K~ 395 (407)
T cd01569 327 VRIIQGDGITLERIEEILERLKAKGFASENIVFGMGGGLLQKVTRDTQGFAMKASAIEINGKWRDVFKD 395 (407)
T ss_pred eEEEEcCCCCHHHHHHHHHHHHHCCCccccceEecCccceecCCCcccCceeEEEEEecCCeeeeeeeC
Confidence 5899999999999995 777999999 99999999999999999999999988 44 388876
No 15
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=99.25 E-value=8.6e-12 Score=112.68 Aligned_cols=68 Identities=26% Similarity=0.426 Sum_probs=60.5
Q ss_pred CEEEEeCCCCHHHHHHHHhCCCcccEEeecCcccccCCCCccceEEEEEEEcCcceeeccCCCCccCCCCceeE
Q 029209 1 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRS 74 (197)
Q Consensus 1 vkI~~S~~Lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~KqV 74 (197)
++|.||||+|++.|.++... +|.|||||.+.++ |++|+++|+|++||+|++|+|+.+||..+|-.++|
T Consensus 262 v~IeaSGgI~~~ni~~ya~~---vD~isvGs~~~~a---~~lDis~~iv~~~g~~~~K~~~~~g~~~~~~~~~~ 329 (343)
T PRK08662 262 VKIFVSGGLDPERIRELRDV---VDGFGVGTYISFA---PPVDFSMDIVEVEGKPIAKRGKLPGIKQVPRLKEI 329 (343)
T ss_pred eEEEEeCCCCHHHHHHHHHh---CCEEEcCccccCC---CccceEEEEEEECCeeeEeecCCcccccCCCHHHH
Confidence 47999999999999999874 9999999999764 89999999999999999999987777777766655
No 16
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=90.66 E-value=0.2 Score=44.71 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=21.5
Q ss_pred CCCccceEEEEEEEcCcceeecc
Q 029209 38 AQAALGCVFKLVEINKQPRIKLS 60 (197)
Q Consensus 38 ~~p~l~~vyKlv~~~g~p~~K~S 60 (197)
.+|++|+++|++++||+|++|.+
T Consensus 278 ~~~~~D~s~~iv~~~g~~~~K~g 300 (302)
T cd01571 278 KAPPVDFTMDIVEVNGQPIAKRG 300 (302)
T ss_pred CCCCCCEEEEEEEECCeeeeccC
Confidence 57999999999999999999995
No 17
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=71.93 E-value=3.8 Score=35.24 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=29.5
Q ss_pred CEEEEeCCCCH--HHHHHHHhCCCcccEEeecCccccc
Q 029209 1 MSITASNDLNE--ETLDALNKQGHEVDAFGIGTYLVTC 36 (197)
Q Consensus 1 vkI~~S~~Lde--~~i~~l~~~g~~id~fGVGT~l~t~ 36 (197)
++++.+||++. +.+.++.+.| +.++|+|+.|+..
T Consensus 159 i~~~ptGGV~~~~~n~~~yl~aG--a~avg~Gs~L~~~ 194 (222)
T PRK07114 159 TKIMPTGGVEPTEENLKKWFGAG--VTCVGMGSKLIPK 194 (222)
T ss_pred CeEEeCCCCCcchhcHHHHHhCC--CEEEEEChhhcCc
Confidence 47899999998 8999999855 7899999999854
No 18
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=62.82 E-value=8.7 Score=35.79 Aligned_cols=36 Identities=14% Similarity=0.285 Sum_probs=30.4
Q ss_pred CEEEEeCCCCHHHHHHHHhCCCcccEEeecCcccccCC
Q 029209 1 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYA 38 (197)
Q Consensus 1 vkI~~S~~Lde~~i~~l~~~g~~id~fGVGT~l~t~~~ 38 (197)
++|.++||++.+.+..+.+.| +|.+-||+.+..+.+
T Consensus 331 ~~I~VdGGI~~eti~~l~~aG--ADivVVGsaIf~a~D 366 (391)
T PRK13307 331 ILVAVAGGVRVENVEEALKAG--ADILVVGRAITKSKD 366 (391)
T ss_pred CcEEEECCcCHHHHHHHHHcC--CCEEEEeHHHhCCCC
Confidence 368999999999999999866 589999999876543
No 19
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=60.16 E-value=8.7 Score=31.92 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=31.9
Q ss_pred EEEEeCCCCH-HHHHHHHhCCCcccEEeecCcccccCCCCccc
Q 029209 2 SITASNDLNE-ETLDALNKQGHEVDAFGIGTYLVTCYAQAALG 43 (197)
Q Consensus 2 kI~~S~~Lde-~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~ 43 (197)
.|++.||+.. +.+.++.+.| .|+..||+.+......|...
T Consensus 158 Pvi~~GGI~~~~~v~~~l~~G--adgV~vgS~l~~~~e~~~~~ 198 (236)
T cd04730 158 PVIAAGGIADGRGIAAALALG--ADGVQMGTRFLATEESGASP 198 (236)
T ss_pred CEEEECCCCCHHHHHHHHHcC--CcEEEEchhhhcCcccCCCH
Confidence 5899999987 8899887755 89999999999886654433
No 20
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=53.24 E-value=18 Score=33.51 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=31.2
Q ss_pred CEEEEeCCCCHHHHHHHHhCCCcccEEeecCcccccCC
Q 029209 1 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYA 38 (197)
Q Consensus 1 vkI~~S~~Lde~~i~~l~~~g~~id~fGVGT~l~t~~~ 38 (197)
+.|++.||++.+.+.++.+.| +|++.||+.|..+.+
T Consensus 163 iPI~a~GGI~~~n~~~~l~aG--Adgv~vGsaI~~~~d 198 (430)
T PRK07028 163 IPIAVAGGLDAETAAKAVAAG--ADIVIVGGNIIKSAD 198 (430)
T ss_pred CcEEEECCCCHHHHHHHHHcC--CCEEEEChHHcCCCC
Confidence 368999999999999999877 689999999987643
No 21
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=50.28 E-value=10 Score=34.84 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=21.6
Q ss_pred HHHHHHhCCCcccEEeecCccccc
Q 029209 13 TLDALNKQGHEVDAFGIGTYLVTC 36 (197)
Q Consensus 13 ~i~~l~~~g~~id~fGVGT~l~t~ 36 (197)
.|.+|+++|+|||+.|+=.||...
T Consensus 209 lI~~LkekG~pIDgiG~QsH~~~~ 232 (345)
T COG3693 209 LIEELKEKGAPIDGIGIQSHFSGD 232 (345)
T ss_pred HHHHHHHCCCCccceeeeeeecCC
Confidence 688999999999999999997755
No 22
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=42.67 E-value=30 Score=30.04 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=28.9
Q ss_pred CEEEEeCCC-CHHHHHHHHhCCCcccEEeecCccccc
Q 029209 1 MSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 36 (197)
Q Consensus 1 vkI~~S~~L-de~~i~~l~~~g~~id~fGVGT~l~t~ 36 (197)
+.|+++|++ |.+.+.++...| +|..+|||.+...
T Consensus 232 ipii~~GGI~~~~da~~~l~~G--Ad~V~igra~l~~ 266 (296)
T cd04740 232 IPIIGVGGIASGEDALEFLMAG--ASAVQVGTANFVD 266 (296)
T ss_pred CCEEEECCCCCHHHHHHHHHcC--CCEEEEchhhhcC
Confidence 368999999 778888888878 6999999998874
No 23
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=35.75 E-value=56 Score=26.79 Aligned_cols=30 Identities=7% Similarity=0.183 Sum_probs=22.6
Q ss_pred EEEEeCCCCH--------HHHHHHHhCCCcccEEeecC
Q 029209 2 SITASNDLNE--------ETLDALNKQGHEVDAFGIGT 31 (197)
Q Consensus 2 kI~~S~~Lde--------~~i~~l~~~g~~id~fGVGT 31 (197)
-|++++|-+- ...+.|+++|..+-+.|||+
T Consensus 112 ~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~ 149 (192)
T cd01473 112 TMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGA 149 (192)
T ss_pred EEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEecc
Confidence 4778887652 33456788999999999995
No 24
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=34.99 E-value=33 Score=30.88 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=28.9
Q ss_pred CEEEEeCCC-CHHHHHHHHhCCCcccEEeecCccccc
Q 029209 1 MSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 36 (197)
Q Consensus 1 vkI~~S~~L-de~~i~~l~~~g~~id~fGVGT~l~t~ 36 (197)
+.|++||++ +...+.+....| +|..|+|+.+...
T Consensus 255 ipVIasGGI~~~~di~kaLalG--Ad~V~igr~~L~~ 289 (333)
T TIGR02151 255 APIIASGGLRTGLDVAKAIALG--ADAVGMARPFLKA 289 (333)
T ss_pred CeEEEECCCCCHHHHHHHHHhC--CCeehhhHHHHHH
Confidence 468999999 888888888877 8999999987754
No 25
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=33.68 E-value=41 Score=30.86 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=30.6
Q ss_pred CEEEEeCCC-CHHHHHHHHhCCCcccEEeecCcccccCC
Q 029209 1 MSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYA 38 (197)
Q Consensus 1 vkI~~S~~L-de~~i~~l~~~g~~id~fGVGT~l~t~~~ 38 (197)
+.++++|++ +.+.+.++.++|. +|..|+|..+....+
T Consensus 306 ~pvi~~G~i~~~~~~~~~l~~g~-~D~V~~gR~~ladP~ 343 (382)
T cd02931 306 VPVIMAGRMEDPELASEAINEGI-ADMISLGRPLLADPD 343 (382)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCC-CCeeeechHhHhCcc
Confidence 368899999 7788888888776 999999999987743
No 26
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=33.42 E-value=54 Score=27.99 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=20.1
Q ss_pred HHHHHHHHhCCCcccEEeecCcccc
Q 029209 11 EETLDALNKQGHEVDAFGIGTYLVT 35 (197)
Q Consensus 11 e~~i~~l~~~g~~id~fGVGT~l~t 35 (197)
...|..|.++|++||++|+=.|+..
T Consensus 139 ~~~v~~l~~~g~~iDgiGlQ~H~~~ 163 (254)
T smart00633 139 YELVKKLKAKGVPIDGIGLQSHLSL 163 (254)
T ss_pred HHHHHHHHHCCCccceeeeeeeecC
Confidence 4567788889999999999777654
No 27
>smart00500 SFM Splicing Factor Motif, present in Prp18 and Pr04.
Probab=33.27 E-value=31 Score=22.44 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=18.0
Q ss_pred CHHHHHHHHhCCCcccEEeec
Q 029209 10 NEETLDALNKQGHEVDAFGIG 30 (197)
Q Consensus 10 de~~i~~l~~~g~~id~fGVG 30 (197)
|++.+..|++-|-||..||=+
T Consensus 3 d~eV~~~LR~lgePi~lFGE~ 23 (44)
T smart00500 3 DSEVIRRLRELGEPITLFGED 23 (44)
T ss_pred HHHHHHHHHHcCCCeeecCCC
Confidence 678899999999999999844
No 28
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=33.23 E-value=29 Score=28.37 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=26.4
Q ss_pred EEEEeCCCCHHHHHHHHhC--CCcccEEeecCcccc
Q 029209 2 SITASNDLNEETLDALNKQ--GHEVDAFGIGTYLVT 35 (197)
Q Consensus 2 kI~~S~~Lde~~i~~l~~~--g~~id~fGVGT~l~t 35 (197)
-|.+|||+|--.|..+..+ +.++..|-+|..-..
T Consensus 21 ~~~LSGGlDSs~i~~~~~~~~~~~~~~~t~~~~~~~ 56 (255)
T PF00733_consen 21 GILLSGGLDSSAIAALAARQGGPPIKTFTIGFEDDD 56 (255)
T ss_dssp EEE--SSHHHHHHHHHHHHTCCSEEEEEEEECSSCC
T ss_pred EEECCCChhHHHHHHHHHHhhCCceeEEEEEcCCCc
Confidence 4789999999999999875 678889988876655
No 29
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=33.16 E-value=66 Score=25.64 Aligned_cols=32 Identities=13% Similarity=0.286 Sum_probs=23.2
Q ss_pred EEEEeCCCC------HHHHHHHHhCCCcccEEeecCcc
Q 029209 2 SITASNDLN------EETLDALNKQGHEVDAFGIGTYL 33 (197)
Q Consensus 2 kI~~S~~Ld------e~~i~~l~~~g~~id~fGVGT~l 33 (197)
-|++|+|.+ +..+..+++.|..+-+.|||+..
T Consensus 107 ~illTDG~~~~~~~~~~~~~~~k~~gv~v~~Vgvg~~~ 144 (177)
T cd01469 107 LVVITDGESHDDPLLKDVIPQAEREGIIRYAIGVGGHF 144 (177)
T ss_pred EEEEeCCCCCCccccHHHHHHHHHCCcEEEEEEecccc
Confidence 366776664 45677788889888888888753
No 30
>PRK13685 hypothetical protein; Provisional
Probab=33.08 E-value=48 Score=29.50 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=23.5
Q ss_pred EEEEeCCCCH------------HHHHHHHhCCCcccEEeecCc
Q 029209 2 SITASNDLNE------------ETLDALNKQGHEVDAFGIGTY 32 (197)
Q Consensus 2 kI~~S~~Lde------------~~i~~l~~~g~~id~fGVGT~ 32 (197)
-|++|+|.|. ..+..+.+.|.+|..+||||.
T Consensus 197 IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~ 239 (326)
T PRK13685 197 IVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTP 239 (326)
T ss_pred EEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCC
Confidence 3778888763 245566778999999999974
No 31
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=32.32 E-value=57 Score=28.87 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEeCCCCHHHHHHHHh---CCCccc-EEeecC
Q 029209 3 ITASNDLNEETLDALNK---QGHEVD-AFGIGT 31 (197)
Q Consensus 3 I~~S~~Lde~~i~~l~~---~g~~id-~fGVGT 31 (197)
|++||+||++..+++.+ ...|+. ..|||+
T Consensus 58 iavtNGI~~~~~~~i~e~I~n~~PV~ls~GIG~ 90 (254)
T PRK02240 58 IAVTNGIDLEDHARIQESIRNRYPVTVSMGIGT 90 (254)
T ss_pred EEEcCCCCHHHHHHHHHHHHhcCCCceEEEEEe
Confidence 78999999997777765 444553 455554
No 32
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=30.47 E-value=68 Score=26.75 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=19.1
Q ss_pred HHHHHHHhCCCcccEEeecCcccc
Q 029209 12 ETLDALNKQGHEVDAFGIGTYLVT 35 (197)
Q Consensus 12 ~~i~~l~~~g~~id~fGVGT~l~t 35 (197)
..+.+|+++|..++..|+|+.-.+
T Consensus 127 ~~~~~lkk~~I~v~vI~~G~~~~~ 150 (187)
T cd01452 127 KLAKRLKKNNVSVDIINFGEIDDN 150 (187)
T ss_pred HHHHHHHHcCCeEEEEEeCCCCCC
Confidence 344788889999999999998443
No 33
>PRK02655 psbI photosystem II reaction center I protein I; Provisional
Probab=30.34 E-value=27 Score=22.12 Aligned_cols=13 Identities=38% Similarity=0.562 Sum_probs=10.2
Q ss_pred ccCCCCccCCCCcee
Q 029209 59 LSEDVSKVSIPCKKR 73 (197)
Q Consensus 59 ~S~~~~K~t~PG~Kq 73 (197)
+|+||+. +||+|.
T Consensus 24 lsnDP~R--nP~rkd 36 (38)
T PRK02655 24 LSSDPTR--NPGRKD 36 (38)
T ss_pred CCCCCCC--CCCccc
Confidence 6887776 789885
No 34
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=29.86 E-value=52 Score=30.05 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=31.3
Q ss_pred EEEEeCCCCHHHHHHHHhCCCcccEEeecCcccccC
Q 029209 2 SITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 37 (197)
Q Consensus 2 kI~~S~~Lde~~i~~l~~~g~~id~fGVGT~l~t~~ 37 (197)
.|+++|+++.+.+.++.++|. +|..|+|..+....
T Consensus 294 pv~~~G~~~~~~ae~~i~~G~-~D~V~~gR~~iadP 328 (362)
T PRK10605 294 VIIGAGAYTAEKAETLIGKGL-IDAVAFGRDYIANP 328 (362)
T ss_pred CEEEeCCCCHHHHHHHHHcCC-CCEEEECHHhhhCc
Confidence 478889999999999999887 99999999999874
No 35
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=29.81 E-value=57 Score=28.69 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=29.7
Q ss_pred CEEEEeCCCCHHHHHHHHhCCCcccEEeecCccccc
Q 029209 1 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 36 (197)
Q Consensus 1 vkI~~S~~Lde~~i~~l~~~g~~id~fGVGT~l~t~ 36 (197)
++|.+.|++..+.++++.+.| ++..+|||.+.+.
T Consensus 77 ~~v~vGGGIr~e~v~~~l~aG--a~rVvIGS~av~~ 110 (253)
T TIGR02129 77 GGLQVGGGINDTNAQEWLDEG--ASHVIVTSWLFTK 110 (253)
T ss_pred CCEEEeCCcCHHHHHHHHHcC--CCEEEECcHHHhC
Confidence 368899999999999999966 7899999988765
No 36
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=28.68 E-value=22 Score=32.08 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=29.4
Q ss_pred EEEEeCCC-CHHHHHHHHhCCCcccEEeecCcccccC
Q 029209 2 SITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCY 37 (197)
Q Consensus 2 kI~~S~~L-de~~i~~l~~~g~~id~fGVGT~l~t~~ 37 (197)
.|+++|++ |.+.+.++.+.| +|..++|..+....
T Consensus 286 PVi~~Ggi~t~e~ae~~l~~g--aD~V~~gR~liadP 320 (353)
T cd04735 286 PLIAVGSINTPDDALEALETG--ADLVAIGRGLLVDP 320 (353)
T ss_pred CEEEECCCCCHHHHHHHHHcC--CChHHHhHHHHhCc
Confidence 58999998 799999998875 89999999998774
No 37
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=28.62 E-value=90 Score=28.01 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=30.0
Q ss_pred CEEEEeCCCC-HHHHHHHHhCCCcccEEeecCcccccCCCC
Q 029209 1 MSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCYAQA 40 (197)
Q Consensus 1 vkI~~S~~Ld-e~~i~~l~~~g~~id~fGVGT~l~t~~~~p 40 (197)
+.|+++|++. ...|......| .|+..+||.|+.+...|
T Consensus 198 vpVIA~GGI~~~~di~kAla~G--A~~VmiGt~fa~t~Es~ 236 (325)
T cd00381 198 VPVIADGGIRTSGDIVKALAAG--ADAVMLGSLLAGTDESP 236 (325)
T ss_pred CcEEecCCCCCHHHHHHHHHcC--CCEEEecchhcccccCC
Confidence 3589999996 57777777766 67888999999886544
No 38
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=28.05 E-value=55 Score=28.56 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=28.6
Q ss_pred CEEEEeCCC-CHHHHHHHHhCCCcccEEeecCccccc
Q 029209 1 MSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 36 (197)
Q Consensus 1 vkI~~S~~L-de~~i~~l~~~g~~id~fGVGT~l~t~ 36 (197)
+.|+++|++ +.+.+.++...| +|...|||.+...
T Consensus 235 ipvi~~GGI~~~~da~~~l~aG--Ad~V~igr~ll~~ 269 (301)
T PRK07259 235 IPIIGMGGISSAEDAIEFIMAG--ASAVQVGTANFYD 269 (301)
T ss_pred CCEEEECCCCCHHHHHHHHHcC--CCceeEcHHHhcC
Confidence 358899998 788899988877 6999999998864
No 39
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=27.85 E-value=69 Score=26.01 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=16.0
Q ss_pred HHHHHHhCCCcccEEeecCc
Q 029209 13 TLDALNKQGHEVDAFGIGTY 32 (197)
Q Consensus 13 ~i~~l~~~g~~id~fGVGT~ 32 (197)
.++.++++|..|...|||+.
T Consensus 128 ~~~~l~~~~I~v~~IgiG~~ 147 (183)
T cd01453 128 TIDKLKKENIRVSVIGLSAE 147 (183)
T ss_pred HHHHHHHcCcEEEEEEechH
Confidence 45567778999999999964
No 40
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=27.23 E-value=55 Score=29.87 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=29.5
Q ss_pred EEEEeCCC-CHHHHHHHHhCCCcccEEeecCcccccC
Q 029209 2 SITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCY 37 (197)
Q Consensus 2 kI~~S~~L-de~~i~~l~~~g~~id~fGVGT~l~t~~ 37 (197)
.++++|++ +.+.+.++.++|. +|..++|..+....
T Consensus 291 pvi~~G~i~~~~~~~~~l~~g~-~D~V~~gR~~ladP 326 (370)
T cd02929 291 PVVGVGRFTSPDKMVEVVKSGI-LDLIGAARPSIADP 326 (370)
T ss_pred CEEEeCCCCCHHHHHHHHHcCC-CCeeeechHhhhCc
Confidence 57889998 6788999988776 89999999998774
No 41
>PLN02411 12-oxophytodienoate reductase
Probab=27.03 E-value=60 Score=29.99 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=31.0
Q ss_pred EEEEeCCCCHHHHHHHHhCCCcccEEeecCcccccCC
Q 029209 2 SITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYA 38 (197)
Q Consensus 2 kI~~S~~Lde~~i~~l~~~g~~id~fGVGT~l~t~~~ 38 (197)
.++++|+++.+..+++.++|. +|..|+|..+....+
T Consensus 315 pvi~~G~i~~~~a~~~l~~g~-aDlV~~gR~~iadPd 350 (391)
T PLN02411 315 TFMCSGGFTRELGMQAVQQGD-ADLVSYGRLFISNPD 350 (391)
T ss_pred CEEEECCCCHHHHHHHHHcCC-CCEEEECHHHHhCcc
Confidence 578999999988889888876 999999999998743
No 42
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=25.78 E-value=92 Score=30.71 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=24.6
Q ss_pred EEEEeCCCCH------HHHHHHHhCCCcccEEeecCc
Q 029209 2 SITASNDLNE------ETLDALNKQGHEVDAFGIGTY 32 (197)
Q Consensus 2 kI~~S~~Lde------~~i~~l~~~g~~id~fGVGT~ 32 (197)
-|++|++.+. ..+..|++.|..|-++|||..
T Consensus 153 VILLTDG~sns~~dvleaAq~LR~~GVeI~vIGVG~g 189 (576)
T PTZ00441 153 VILMTDGIPNSKYRALEESRKLKDRNVKLAVIGIGQG 189 (576)
T ss_pred EEEEecCCCCCcccHHHHHHHHHHCCCEEEEEEeCCC
Confidence 5889999962 235788889999999999963
No 43
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=25.65 E-value=89 Score=27.82 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=28.5
Q ss_pred CEEEEeCCCC-HHHHHHHHhCCCcccEEeecCcccccCCC
Q 029209 1 MSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCYAQ 39 (197)
Q Consensus 1 vkI~~S~~Ld-e~~i~~l~~~g~~id~fGVGT~l~t~~~~ 39 (197)
+.|+++||+. ...+......| .|+.-|||.+..+...
T Consensus 162 iPviaaGGI~~~~~~~~al~~G--A~gV~iGt~f~~t~Es 199 (307)
T TIGR03151 162 IPVIAAGGIADGRGMAAAFALG--AEAVQMGTRFLCAKEC 199 (307)
T ss_pred CCEEEECCCCCHHHHHHHHHcC--CCEeecchHHhccccc
Confidence 3689999995 45577777766 5889999999987543
No 44
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=24.96 E-value=1.1e+02 Score=23.99 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=21.5
Q ss_pred EEEEeCCCCHHHHHHHHhCCCcccEEeecCccc
Q 029209 2 SITASNDLNEETLDALNKQGHEVDAFGIGTYLV 34 (197)
Q Consensus 2 kI~~S~~Lde~~i~~l~~~g~~id~fGVGT~l~ 34 (197)
+|++-|.+-.+..++|.+.|. -..|+.||++.
T Consensus 86 ~vivGG~~~~~~~~~l~~~Gv-d~~~~~gt~~~ 117 (132)
T TIGR00640 86 LVVVGGVIPPQDFDELKEMGV-AEIFGPGTPIP 117 (132)
T ss_pred EEEEeCCCChHhHHHHHHCCC-CEEECCCCCHH
Confidence 566666666666777777665 45777777654
No 45
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=24.89 E-value=94 Score=27.95 Aligned_cols=33 Identities=12% Similarity=0.159 Sum_probs=28.1
Q ss_pred EEeCCC-CHHHHHHHHhCCCcccEEeecCcccccCC
Q 029209 4 TASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYA 38 (197)
Q Consensus 4 ~~S~~L-de~~i~~l~~~g~~id~fGVGT~l~t~~~ 38 (197)
++.|++ +.+.+..+.+.| +|++-||+.+..+.+
T Consensus 200 iAeGGI~Tpena~~v~e~G--AdgVaVGSAI~~a~d 233 (283)
T cd04727 200 FAAGGVATPADAALMMQLG--ADGVFVGSGIFKSEN 233 (283)
T ss_pred EEeCCCCCHHHHHHHHHcC--CCEEEEcHHhhcCCC
Confidence 389999 999999999866 789999999987644
No 46
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=23.56 E-value=1e+02 Score=23.94 Aligned_cols=31 Identities=16% Similarity=0.315 Sum_probs=20.1
Q ss_pred EEEEeCCCC------HHH-HHHHHhCCCcccEEeecCc
Q 029209 2 SITASNDLN------EET-LDALNKQGHEVDAFGIGTY 32 (197)
Q Consensus 2 kI~~S~~Ld------e~~-i~~l~~~g~~id~fGVGT~ 32 (197)
-|++|++.+ ... ...+.+.|.+|.++|+|+.
T Consensus 106 iiliTDG~~~~g~~~~~~~~~~~~~~gi~i~~i~ig~~ 143 (180)
T cd01467 106 IVLLTDGENNAGEIDPATAAELAKNKGVRIYTIGVGKS 143 (180)
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHCCCEEEEEEecCC
Confidence 367776643 223 3334558999999999963
No 47
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=23.40 E-value=76 Score=27.60 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=25.8
Q ss_pred EEEEeCCC-CHHHHHHHHhCCCcccEEeecCccccc
Q 029209 2 SITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 36 (197)
Q Consensus 2 kI~~S~~L-de~~i~~l~~~g~~id~fGVGT~l~t~ 36 (197)
.|+++|++ +.+.+.++.+.| +|+..|||.+...
T Consensus 236 pvi~~GGI~s~~da~~~l~~G--Ad~V~igr~~l~~ 269 (300)
T TIGR01037 236 PIIGVGGITSFEDALEFLMAG--ASAVQVGTAVYYR 269 (300)
T ss_pred CEEEECCCCCHHHHHHHHHcC--CCceeecHHHhcC
Confidence 57888888 677777777766 7888899888754
No 48
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=23.01 E-value=1.1e+02 Score=26.26 Aligned_cols=31 Identities=32% Similarity=0.479 Sum_probs=26.0
Q ss_pred EEEEeCCCCHHHHHHHHhCCCcccEEeecCc-cc
Q 029209 2 SITASNDLNEETLDALNKQGHEVDAFGIGTY-LV 34 (197)
Q Consensus 2 kI~~S~~Lde~~i~~l~~~g~~id~fGVGT~-l~ 34 (197)
.|-+=||++++.|..+.+.| +|.|=+||+ +-
T Consensus 171 ~IeVDGGI~~~~i~~~~~aG--ad~~V~Gss~iF 202 (229)
T PRK09722 171 LIEVDGSCNQKTYEKLMEAG--ADVFIVGTSGLF 202 (229)
T ss_pred EEEEECCCCHHHHHHHHHcC--CCEEEEChHHHc
Confidence 58899999999999999866 688877875 44
No 49
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning]
Probab=22.64 E-value=68 Score=27.68 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCChhhhhcc----CCcccccccCHHHHHHHHHHHH
Q 029209 148 RERCIKQLEQMRPDHMRRL----NPTPYKVSVSAKLYDFIHFLWL 188 (197)
Q Consensus 148 R~~~~~~l~~L~~~~~rl~----~P~~Y~V~lS~~L~~l~~~L~~ 188 (197)
.+|.++||..|-+-..+.. .-+.|++.+++-|..++++|..
T Consensus 85 H~~hReqlpeLi~latKverVHgd~p~~p~gl~~~L~~l~~eL~~ 129 (221)
T COG2846 85 HERHREQLPELIPLATKVERVHGDKPSCPAGLAELLEALKEELES 129 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHHHHHH
Confidence 4567777777766555554 3348999999999999999875
No 50
>CHL00024 psbI photosystem II protein I
Probab=22.56 E-value=47 Score=20.80 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=9.3
Q ss_pred ccCCCCccCCCCcee
Q 029209 59 LSEDVSKVSIPCKKR 73 (197)
Q Consensus 59 ~S~~~~K~t~PG~Kq 73 (197)
+|+|++. +||+|.
T Consensus 24 lsnDp~R--nP~rk~ 36 (36)
T CHL00024 24 LSNDPGR--NPGRKE 36 (36)
T ss_pred cCCCCCC--CCCCCC
Confidence 5777766 788873
No 51
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=22.48 E-value=1.1e+02 Score=23.29 Aligned_cols=29 Identities=17% Similarity=0.333 Sum_probs=19.5
Q ss_pred EEEeCCCC------HHHHHH----HHhCCCcccEEeecC
Q 029209 3 ITASNDLN------EETLDA----LNKQGHEVDAFGIGT 31 (197)
Q Consensus 3 I~~S~~Ld------e~~i~~----l~~~g~~id~fGVGT 31 (197)
|++|++.+ .+.+.+ +.+.+..|..+|+|.
T Consensus 101 vl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~i~~i~~g~ 139 (170)
T cd01465 101 LLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFGD 139 (170)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEEeCC
Confidence 67888874 233333 334788899999983
No 52
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=21.94 E-value=89 Score=24.65 Aligned_cols=32 Identities=6% Similarity=0.106 Sum_probs=20.6
Q ss_pred EEEEeCCCCHHH-------HHHHHhCCCcccEEeecCcc
Q 029209 2 SITASNDLNEET-------LDALNKQGHEVDAFGIGTYL 33 (197)
Q Consensus 2 kI~~S~~Lde~~-------i~~l~~~g~~id~fGVGT~l 33 (197)
-|++|+|.+... +.++.+.+..|-+||||+..
T Consensus 111 iillTDG~~~~~~~~~~~~~~~~~~~~~~i~~igiG~~~ 149 (176)
T cd01464 111 VFLLTDGEPTDDLTAAIERIKEARDSKGRIVACAVGPKA 149 (176)
T ss_pred EEEEcCCCCCchHHHHHHHHHhhcccCCcEEEEEecccc
Confidence 367888776322 33333356788899999843
No 53
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=21.83 E-value=54 Score=31.26 Aligned_cols=49 Identities=22% Similarity=0.374 Sum_probs=38.1
Q ss_pred CEEEEeCCCCHHHHHHHHhCCCcccEEeec------CcccccCCCCccceEEEEE
Q 029209 1 MSITASNDLNEETLDALNKQGHEVDAFGIG------TYLVTCYAQAALGCVFKLV 49 (197)
Q Consensus 1 vkI~~S~~Lde~~i~~l~~~g~~id~fGVG------T~l~t~~~~p~l~~vyKlv 49 (197)
+.|++-|..+.+.+..|.+.|+.+-..|+| |+..|+.+.|.+.-+|+++
T Consensus 267 ~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~ 321 (475)
T TIGR01303 267 VPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECA 321 (475)
T ss_pred CeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHH
Confidence 357888899999999999988755555565 6666777888888887775
No 54
>PRK14057 epimerase; Provisional
Probab=21.74 E-value=1.3e+02 Score=26.55 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=27.0
Q ss_pred CEEEEeCCCCHHHHHHHHhCCCcccEEeecCcccc
Q 029209 1 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 35 (197)
Q Consensus 1 vkI~~S~~Lde~~i~~l~~~g~~id~fGVGT~l~t 35 (197)
+.|-+=|+++++.|..+.+.| +|.|=.|+.+-.
T Consensus 194 ~~IeVDGGI~~~ti~~l~~aG--ad~~V~GSalF~ 226 (254)
T PRK14057 194 KIIVIDGSLTQDQLPSLIAQG--IDRVVSGSALFR 226 (254)
T ss_pred ceEEEECCCCHHHHHHHHHCC--CCEEEEChHhhC
Confidence 358899999999999999977 677877777653
No 55
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=21.73 E-value=69 Score=29.72 Aligned_cols=38 Identities=34% Similarity=0.510 Sum_probs=25.9
Q ss_pred CEEEEeCCC-CHHHHHHHHhCCCcccEEeecCcccccCCCCccceE
Q 029209 1 MSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCV 45 (197)
Q Consensus 1 vkI~~S~~L-de~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~v 45 (197)
|++++||+| +...+.....-|| |.+++||.+.-+ ++|+
T Consensus 275 V~Li~sGgl~t~~dv~kalaLGA--D~v~igt~~liA-----lGC~ 313 (368)
T PF01645_consen 275 VSLIASGGLRTGDDVAKALALGA--DAVYIGTAALIA-----LGCI 313 (368)
T ss_dssp SEEEEESS--SHHHHHHHHHCT---SEEE-SHHHHHH-----CT--
T ss_pred eEEEEeCCccCHHHHHHHHhcCC--CeeEecchhhhh-----cchH
Confidence 578999987 5667777777674 999999988766 6664
No 56
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=21.51 E-value=1.1e+02 Score=24.28 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=21.9
Q ss_pred EEEeCCCC------HHHHHHHHhCCCcccEEeecCcc
Q 029209 3 ITASNDLN------EETLDALNKQGHEVDAFGIGTYL 33 (197)
Q Consensus 3 I~~S~~Ld------e~~i~~l~~~g~~id~fGVGT~l 33 (197)
|++|+|-+ ...+.+|++.|..+-.+|||+..
T Consensus 113 illTDG~~~~~~~~~~~a~~l~~~gv~v~~igiG~~~ 149 (186)
T cd01471 113 IIMTDGIPDSKFRTLKEARKLRERGVIIAVLGVGQGV 149 (186)
T ss_pred EEEccCCCCCCcchhHHHHHHHHCCCEEEEEEeehhh
Confidence 56675553 14567788888888899999643
No 57
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=21.30 E-value=98 Score=25.53 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=21.7
Q ss_pred EEEeCCCCH------------HHHHHHHhCCCcccEEeecCc
Q 029209 3 ITASNDLNE------------ETLDALNKQGHEVDAFGIGTY 32 (197)
Q Consensus 3 I~~S~~Lde------------~~i~~l~~~g~~id~fGVGT~ 32 (197)
|++||+-|. ..+.+|.+.|..+..||+|+.
T Consensus 132 vL~TDg~~p~~~~~~~~~~~~~~a~~l~~~gI~i~~i~i~~~ 173 (218)
T cd01458 132 FLFTNNDDPHGGDSIKDSQAAVKAEDLKDKGIELELFPLSSP 173 (218)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCC
Confidence 677886664 345566667899999998864
No 58
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=20.91 E-value=1.2e+02 Score=22.73 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=22.2
Q ss_pred EEEEeCCCCH----HHHHHHHhCCCcccEEeecCccc
Q 029209 2 SITASNDLNE----ETLDALNKQGHEVDAFGIGTYLV 34 (197)
Q Consensus 2 kI~~S~~Lde----~~i~~l~~~g~~id~fGVGT~l~ 34 (197)
-|++|++-+. +.+..+.++|..+..+|+|+.-.
T Consensus 103 iv~iTDG~~~~~~~~~~~~~~~~~i~i~~v~~~~~~~ 139 (172)
T PF13519_consen 103 IVLITDGEDNSSDIEAAKALKQQGITIYTVGIGSDSD 139 (172)
T ss_dssp EEEEES-TTHCHHHHHHHHHHCTTEEEEEEEES-TT-
T ss_pred EEEecCCCCCcchhHHHHHHHHcCCeEEEEEECCCcc
Confidence 3788888765 35667777888888888886554
No 59
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=20.76 E-value=66 Score=28.69 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=21.4
Q ss_pred HHHHHHHhCCCcccEEeecCcccccCC
Q 029209 12 ETLDALNKQGHEVDAFGIGTYLVTCYA 38 (197)
Q Consensus 12 ~~i~~l~~~g~~id~fGVGT~l~t~~~ 38 (197)
..|..|+++|+|||++|+=+|+.....
T Consensus 192 ~lv~~l~~~gvpIdgIG~Q~H~~~~~~ 218 (320)
T PF00331_consen 192 NLVKDLKARGVPIDGIGLQSHFDAGYP 218 (320)
T ss_dssp HHHHHHHHTTHCS-EEEEEEEEETTSS
T ss_pred HHHHHHHhCCCccceechhhccCCCCC
Confidence 457788889999999999999976643
No 60
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=20.48 E-value=76 Score=27.42 Aligned_cols=36 Identities=8% Similarity=0.196 Sum_probs=24.8
Q ss_pred CEEEEeCCCCHHH-------HHHHHhCCCcccEEeecCcccccCC
Q 029209 1 MSITASNDLNEET-------LDALNKQGHEVDAFGIGTYLVTCYA 38 (197)
Q Consensus 1 vkI~~S~~Lde~~-------i~~l~~~g~~id~fGVGT~l~t~~~ 38 (197)
++|++|||++.+. +..+.+.|+. +.-+|..+..+.+
T Consensus 197 ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~--Gis~gr~i~~~~~ 239 (267)
T PRK07226 197 VPVVIAGGPKTDTDREFLEMVRDAMEAGAA--GVAVGRNVFQHED 239 (267)
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHHcCCc--EEehhhhhhcCCC
Confidence 4689999999542 4455577753 7777877776543
No 61
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=20.46 E-value=1.3e+02 Score=26.97 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=21.0
Q ss_pred EEEEeCCC-CHHHHHHHHhCCCcccEEeecCccccc
Q 029209 2 SITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 36 (197)
Q Consensus 2 kI~~S~~L-de~~i~~l~~~g~~id~fGVGT~l~t~ 36 (197)
.|+++||+ +.+.+.++.++. .+|+..||+.+...
T Consensus 196 PVI~nGgI~s~~da~~~l~~~-gadgVmiGR~~l~n 230 (321)
T PRK10415 196 PVIANGDITDPLKARAVLDYT-GADALMIGRAAQGR 230 (321)
T ss_pred cEEEeCCCCCHHHHHHHHhcc-CCCEEEEChHhhcC
Confidence 56777777 666666666532 26677777666543
No 62
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=20.31 E-value=15 Score=27.99 Aligned_cols=43 Identities=23% Similarity=0.152 Sum_probs=30.3
Q ss_pred HHHHHHhCCCcccEEeecCcccccCCCCccceEEEEEEEcCcceeecc
Q 029209 13 TLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLS 60 (197)
Q Consensus 13 ~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vyKlv~~~g~p~~K~S 60 (197)
.+.+...+...+..+|.|++..++ ..+.+||.+..+.|+.-.+
T Consensus 5 ~~a~~~~~~~~i~~~G~G~s~~~a-----~e~~~kl~e~~~i~~~~~~ 47 (153)
T cd05009 5 ELAEKLKEAKSFYVLGRGPNYGTA-----LEGALKLKETSYIHAEAYS 47 (153)
T ss_pred HHHHHHhccCcEEEEcCCCCHHHH-----HHHHHHHHHHHhhcceecc
Confidence 444444455669999999999887 6777888887555555443
Done!