Query 029210
Match_columns 197
No_of_seqs 173 out of 295
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 15:01:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029210.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029210hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_R 60S ribosomal protein L 100.0 2.4E-90 8.1E-95 580.9 15.0 188 1-188 1-188 (189)
2 4a1a_O RPL19, 60S ribosomal pr 100.0 6.8E-88 2.3E-92 564.3 14.6 178 1-178 1-178 (185)
3 3iz5_T 60S ribosomal protein L 100.0 6.4E-87 2.2E-91 566.1 18.5 181 1-182 1-181 (209)
4 2zkr_p 60S ribosomal protein L 100.0 4.4E-86 1.5E-90 557.4 13.8 186 1-186 1-186 (196)
5 4a17_O RPL19, 60S ribosomal pr 100.0 6.9E-83 2.4E-87 533.8 17.0 165 1-165 1-165 (185)
6 1vq8_P 50S ribosomal protein L 100.0 1.5E-77 5.2E-82 488.2 13.9 149 1-149 1-149 (149)
7 3j21_Q PFEL19, 50S ribosomal p 100.0 3.8E-77 1.3E-81 486.3 14.9 146 1-146 1-146 (150)
8 3jyw_P 60S ribosomal protein L 100.0 3.8E-73 1.3E-77 472.7 9.7 156 2-157 1-156 (176)
9 1fme_A FSD-EY peptide; beta-BE 66.5 2.2 7.4E-05 25.5 1.1 21 126-146 6-26 (28)
10 2ab3_A ZNF29; zinc finger prot 22.7 35 0.0012 16.8 1.2 15 129-143 11-25 (29)
11 2m0d_A Zinc finger and BTB dom 21.1 53 0.0018 16.1 1.7 16 129-144 10-25 (30)
12 1ard_A Yeast transcription fac 21.0 66 0.0023 15.7 2.1 16 129-144 9-24 (29)
13 1sp2_A SP1F2; zinc finger, tra 20.8 59 0.002 16.5 1.9 15 129-143 11-25 (31)
14 1klr_A Zinc finger Y-chromosom 20.1 51 0.0017 16.1 1.5 16 129-144 9-24 (30)
No 1
>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T 3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 4b6a_R 1s1i_P
Probab=100.00 E-value=2.4e-90 Score=580.86 Aligned_cols=188 Identities=56% Similarity=0.920 Sum_probs=184.9
Q ss_pred CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCcCC
Q 029210 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (197)
Q Consensus 1 M~~l~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~kp~~~~SR~R~r~~~~ak~kGRh~G~Gk 80 (197)
|++|++||||||+||+||+++|||||||++||++||||||||+||+||+|+++|++|||||||+++++++++|||+|+||
T Consensus 1 M~~L~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~Kp~~~~Sr~R~r~~~~ar~kGRh~G~Gk 80 (189)
T 3u5e_R 1 MANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGK 80 (189)
T ss_dssp -CCCHHHHHHHHHHHTSCGGGCEECTTCHHHHHTCCSHHHHHHHHTTTSEECCCCCCCCTHHHHHHHHHHHTTCSCSGGG
T ss_pred CcchHHHHHHHHHHHCCCCCeeecCHHHHHHHHhhhhHHHHHHHHHCCCeEecCccCCChhHHHHHHHHHHhCCCCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHHhhHHHHhhhhhHHHH
Q 029210 81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (197)
Q Consensus 81 RKGt~~AR~p~K~~Wm~RiR~lRrlLr~~Re~~kID~~~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dQae 160 (197)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|++|||++|||++++|+|+||||
T Consensus 81 RKGt~~AR~p~K~~WmrriR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dqae 160 (189)
T 3u5e_R 81 RKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAE 160 (189)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhcCCCCC
Q 029210 161 AKRAKNKASRERKLARREERLAQGPGEK 188 (197)
Q Consensus 161 A~r~k~k~~r~rr~~r~~~kk~~~~~~~ 188 (197)
|+|+||+++++++++++|+++++|+.++
T Consensus 161 a~r~k~k~~~~r~~~~~~~k~~~~~~~~ 188 (189)
T 3u5e_R 161 ARRLKNRAARDRRAQRVAEKRDALLKED 188 (189)
T ss_dssp HHHHHHHHHHHHHHHTTTSSTTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999988654
No 2
>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1c_O 4a1e_O
Probab=100.00 E-value=6.8e-88 Score=564.28 Aligned_cols=178 Identities=66% Similarity=1.053 Sum_probs=145.8
Q ss_pred CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCcCC
Q 029210 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (197)
Q Consensus 1 M~~l~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~kp~~~~SR~R~r~~~~ak~kGRh~G~Gk 80 (197)
|++|++||||||+||+||+++|||||||++||++||||||||+||+||+|+++|++|||||||+++++++++|||+|+||
T Consensus 1 M~~L~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~Kp~~~~Sr~R~r~~~~ar~kGRh~G~Gk 80 (185)
T 4a1a_O 1 MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGK 80 (185)
T ss_dssp -CCCHHHHHHHHHHHTSCGGGEEECSSSHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCCHHHHHHHHHHHHTSSCCSTT
T ss_pred CcchHHHHHHHHHHhCCCCcccccChHHHHHHHhcccHHHHHHHHHCCCeeecCCCCCChHHHHHHHHHHHhCCCCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHHhhHHHHhhhhhHHHH
Q 029210 81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (197)
Q Consensus 81 RKGt~~AR~p~K~~Wm~RiR~lRrlLr~~Re~~kID~~~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dQae 160 (197)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|+||||++|||++++|+|+||||
T Consensus 81 RKGt~~AR~p~K~~WmrriR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dqae 160 (185)
T 4a1a_O 81 RKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQE 160 (185)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHTC-------------
T ss_pred cccchhccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHH
Q 029210 161 AKRAKNKASRERKLARRE 178 (197)
Q Consensus 161 A~r~k~k~~r~rr~~r~~ 178 (197)
|+|+||+++++++++++|
T Consensus 161 a~r~k~k~~r~~~~~~~~ 178 (185)
T 4a1a_O 161 ARRAKNTASRAKRNEKAQ 178 (185)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 999999999999999887
No 3
>3iz5_T 60S ribosomal protein L19 (L19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_T
Probab=100.00 E-value=6.4e-87 Score=566.06 Aligned_cols=181 Identities=91% Similarity=1.308 Sum_probs=177.7
Q ss_pred CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCcCC
Q 029210 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (197)
Q Consensus 1 M~~l~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~kp~~~~SR~R~r~~~~ak~kGRh~G~Gk 80 (197)
|++|++||||||+||+||++||||||||++||++||||||||+||+||+|+++|++||||+||+++++++++|||+|+|+
T Consensus 1 M~~L~~QKRLAAsVL~cGk~rVWlDPne~~eIa~AnsRq~IRkLIkdGlIi~Kpv~~hSR~R~r~~~~ar~kGRh~G~Gk 80 (209)
T 3iz5_T 1 MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPQKIHSRSRARRAHEAKQKGRHSGYGK 80 (209)
T ss_dssp CCCCHHHHHHHHHHHTSCTTTEEECSSSHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCHHHHHHHHHTTSSCCSCSSSS
T ss_pred CcchHHHHHHHHHHhCCCCCeeccChHHHHHHHhcccHHHHHHHHHCCCeEecCCcCCChHHHHHHHHHHHhCCCCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHHhhHHHHhhhhhHHHH
Q 029210 81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (197)
Q Consensus 81 RKGt~~AR~p~K~~Wm~RiR~lRrlLr~~Re~~kID~~~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dQae 160 (197)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++|||++|||++++|+|+||||
T Consensus 81 RKGt~~AR~p~K~~WmrRiR~LRrlLr~~Re~~kID~h~Yr~LY~KaKGn~Fknk~~L~e~I~k~Kaek~r~k~l~dqae 160 (209)
T 3iz5_T 81 RRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (209)
T ss_dssp SCSCTTTTCCSHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHTTCCCSSSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHHHh
Q 029210 161 AKRAKNKASRERKLARREERLA 182 (197)
Q Consensus 161 A~r~k~k~~r~rr~~r~~~kk~ 182 (197)
|+|+|+++++++++++ +++++
T Consensus 161 Arr~k~k~~r~rr~~r-~~~~~ 181 (209)
T 3iz5_T 161 AKRAKSKASRERKIAR-REERL 181 (209)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHh
Confidence 9999999999999999 44443
No 4
>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=4.4e-86 Score=557.35 Aligned_cols=186 Identities=65% Similarity=1.036 Sum_probs=152.5
Q ss_pred CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCcCC
Q 029210 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (197)
Q Consensus 1 M~~l~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~kp~~~~SR~R~r~~~~ak~kGRh~G~Gk 80 (197)
|++|++||||||+||+||+++||||||+++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+|+||
T Consensus 1 M~~L~~QKRLAA~VL~cG~~rVWlDP~~~~eI~~A~sR~~IR~LIkdG~I~~Kp~~~~SR~R~r~~~~ar~kGRh~G~Gk 80 (196)
T 2zkr_p 1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGK 80 (196)
T ss_dssp --------CHHHHHHTSCGGGEEECSTTHHHHHHCCSHHHHHHHHHHTSEEECCCCC-CCHHHHHHHHHHHHTCCCC---
T ss_pred CcchHHHHHHHHHHHCCCcCceecChHHHHHHHHhhhHHHHHHHHHCCCeEecCcccccHHHHHHHHHHHHhCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHHhhHHHHhhhhhHHHH
Q 029210 81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (197)
Q Consensus 81 RKGt~~AR~p~K~~Wm~RiR~lRrlLr~~Re~~kID~~~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dQae 160 (197)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++|||+.|||++++|+|+||||
T Consensus 81 RKGt~~AR~p~K~~Wm~riR~lRrlLr~~Re~~kID~~~Yr~LY~kaKGn~Fknk~~L~e~I~~~Kae~~r~k~l~~q~e 160 (196)
T 2zkr_p 81 RKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAE 160 (196)
T ss_dssp ---CHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC-----------------CHHHHHHHHHHHH
T ss_pred CcCcccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhcCCC
Q 029210 161 AKRAKNKASRERKLARREERLAQGPG 186 (197)
Q Consensus 161 A~r~k~k~~r~rr~~r~~~kk~~~~~ 186 (197)
|++++++++++++++++++++++++.
T Consensus 161 a~r~k~k~~r~~r~~~~~~~~~~~~~ 186 (196)
T 2zkr_p 161 ARRSKTKEARKRREERLQAKKEEIIK 186 (196)
T ss_dssp HHHTTTHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988875
No 5
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila}
Probab=100.00 E-value=6.9e-83 Score=533.84 Aligned_cols=165 Identities=64% Similarity=1.017 Sum_probs=162.1
Q ss_pred CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCcCC
Q 029210 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (197)
Q Consensus 1 M~~l~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~kp~~~~SR~R~r~~~~ak~kGRh~G~Gk 80 (197)
|++|++||||||+||+||++||||||||++||++||||||||+||+||+|+++|++||||+||+++++++++|||+|+||
T Consensus 1 M~~L~~QKRLAAsVL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdGlIi~Kpv~~~SR~R~r~~~~ar~kGRh~G~Gk 80 (185)
T 4a17_O 1 MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGK 80 (185)
T ss_dssp -CCCHHHHHHHHHHHTSCGGGEEECSTTHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCCHHHHHHHHHHHHTSSCCSTT
T ss_pred CcchHHHHHHHHHHhCCCCCeeecChHHHHHHHhcccHHHHHHHHHCCCEEeCCcccCChHHHHHHHHHHHhCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHHhhHHHHhhhhhHHHH
Q 029210 81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (197)
Q Consensus 81 RKGt~~AR~p~K~~Wm~RiR~lRrlLr~~Re~~kID~~~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dQae 160 (197)
|+||+|||||+|++||+|||+||++|++|||+|+||+|+||+||++||||+|+|+++|+||||++|||++++|+|+||||
T Consensus 81 RKGt~~AR~p~K~~WmrRiR~LRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~Kae~~r~k~l~dqae 160 (185)
T 4a17_O 81 RKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSKAXXXXXXXXXXXXX 160 (185)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHhhhccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q 029210 161 AKRAK 165 (197)
Q Consensus 161 A~r~k 165 (197)
|.-.-
T Consensus 161 a~~~~ 165 (185)
T 4a17_O 161 XXXXX 165 (185)
T ss_dssp HHHHH
T ss_pred ccccc
Confidence 97654
No 6
>1vq8_P 50S ribosomal protein L19E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.94.1.1 PDB: 1vq4_P* 1vq5_P* 1vq6_P* 1vq7_P* 1s72_P* 1vq9_P* 1vqk_P* 1vql_P* 1vqm_P* 1vqn_P* 1vqo_P* 1vqp_P* 1yhq_P* 1yi2_P* 1yij_P* 1yit_P* 1yj9_P* 1yjn_P* 1yjw_P* 2otj_P* ...
Probab=100.00 E-value=1.5e-77 Score=488.17 Aligned_cols=149 Identities=35% Similarity=0.577 Sum_probs=142.8
Q ss_pred CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCcCC
Q 029210 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (197)
Q Consensus 1 M~~l~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~kp~~~~SR~R~r~~~~ak~kGRh~G~Gk 80 (197)
|++|++||||||+||+||+++||||||+++||++||||+|||+||+||+|+++|++||||+||+++++++++|||+|+||
T Consensus 1 M~~l~~QKRLAA~vL~cG~~rVw~DP~~~~eI~~A~sR~~IR~LIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGR~~G~Gk 80 (149)
T 1vq8_P 1 MTDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGS 80 (149)
T ss_dssp -CCCHHHHHHHHHHTTSCGGGEEECGGGHHHHHHCCSHHHHHHHHHTTSEEECCCCCCCCHHHHHHHHHHHTTCSCSGGG
T ss_pred CcchHHHHHHHHHHHCCCcCceecCHHHHHHHHhcccHHHHHHHHHCCCeEeccccCccHHHHHHHHHHHHhCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHHhhHH
Q 029210 81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEK 149 (197)
Q Consensus 81 RKGt~~AR~p~K~~Wm~RiR~lRrlLr~~Re~~kID~~~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~ 149 (197)
|+||+|||||+|+.||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++|||+.++|+
T Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRrlLr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~~~I~~~~~~~ 149 (149)
T 1vq8_P 81 RKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEFDSVADLERYIDANHGDA 149 (149)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTTCCSSHHHHHHHHTC-----
T ss_pred CcCcccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999884
No 7
>3j21_Q PFEL19, 50S ribosomal protein L19E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.8e-77 Score=486.26 Aligned_cols=146 Identities=42% Similarity=0.814 Sum_probs=144.7
Q ss_pred CCcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCcCC
Q 029210 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (197)
Q Consensus 1 M~~l~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~kp~~~~SR~R~r~~~~ak~kGRh~G~Gk 80 (197)
|++|++||||||+||+||+++|||||||++||++||||||||+||+||+|+++|++|||||||+++++++++|||+|+||
T Consensus 1 m~~l~~QKRLAa~vL~cGk~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGR~~G~Gk 80 (150)
T 3j21_Q 1 MNTLKMQRRIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSRYRAKIRHEQKKKGRHRGPGS 80 (150)
T ss_dssp CCCCHHHHHHHHHHHTSCGGGEEECTTCHHHHHTCCSHHHHHHHHHTTSEEECCCCCCCCHHHHHHHHHHHTTCSCSTTT
T ss_pred CcchHHHHHHHHHHHcCCcceeecChHHHHHHHhcccHHHHHHHHHCCCeEecCCcCcCHHHHHHHHHHHHhcccCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHHh
Q 029210 81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146 (197)
Q Consensus 81 RKGt~~AR~p~K~~Wm~RiR~lRrlLr~~Re~~kID~~~Y~~LY~kaKGn~Fknk~~L~e~I~k~k 146 (197)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|+|||+...
T Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRrlLr~~re~~kID~~~Y~~LY~kaKGn~Fknk~~L~e~i~~~~ 146 (150)
T 3j21_Q 81 RKGKKTARMGKKELWIKTIRALRKELRKLKAQKKIDRKTYRMLYIRAKGGQFKNKHQLYLFLEEHG 146 (150)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCSCHHHHHHHHHHHS
T ss_pred ccCcccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999864
No 8
>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=100.00 E-value=3.8e-73 Score=472.70 Aligned_cols=156 Identities=58% Similarity=0.959 Sum_probs=152.5
Q ss_pred CcchhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCcCCc
Q 029210 2 VSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKR 81 (197)
Q Consensus 2 ~~l~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~kp~~~~SR~R~r~~~~ak~kGRh~G~GkR 81 (197)
++|++||||||+||+||++||||||||++||++||||||||+||+||+|+++|++||||+||+++++++++|||+|+|||
T Consensus 1 ~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGr~~G~GkR 80 (176)
T 3jyw_P 1 ANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKR 80 (176)
T ss_dssp CCCHHHHHHHHHHHTCCTTTEECCSSCCHHHHHCCSHHHHHHHHHHTCSEECCCCCCCSHHHHHHHHHHTTTSSCSSSSC
T ss_pred CCcHHHHHHHHHHhCCCCCccccChHHHHHHHhhccHHHHHHHHHCCCEEeCCCcCCChHHHHHHHHHHhcCCCCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHHhhHHHHhhhhhH
Q 029210 82 KGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSD 157 (197)
Q Consensus 82 KGt~~AR~p~K~~Wm~RiR~lRrlLr~~Re~~kID~~~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~d 157 (197)
+||+|||||+|++||++||+||++|++|||+|+||+|+||.||+++|||+|+|+++|++|||+.++|+++...-+.
T Consensus 81 kGt~~AR~p~K~~Wm~riR~lRrlLr~yRe~gkIDk~lYr~LY~kaKGn~Fknk~~L~e~I~k~ka~~~~~~~~~~ 156 (176)
T 3jyw_P 81 KGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIAAAAAAAAAAAAAAA 156 (176)
T ss_dssp SSCTTCSSCHHHHHHHHHHHHHHHHSTTTTTTSSCSTTTTTTGGGTTTTCCCSTTHHHHCTTTTGGGGHHHHHHGG
T ss_pred cccccccCChHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHHhcCCEechHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999765544
No 9
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=66.55 E-value=2.2 Score=25.47 Aligned_cols=21 Identities=43% Similarity=0.602 Sum_probs=18.6
Q ss_pred hhcCCccccHHHHHHHHHHHh
Q 029210 126 KVKGNVFKNKRVLMESIHKSK 146 (197)
Q Consensus 126 kaKGn~Fknk~~L~e~I~k~k 146 (197)
+-||-+|+|...|.++|++.+
T Consensus 6 kykgrtfrnekelrdfiekfk 26 (28)
T 1fme_A 6 KYKGRTFRNEKELRDFIEKFK 26 (28)
T ss_dssp ESSSCEECCHHHHHHHHHHCC
T ss_pred hhcccccccHHHHHHHHHHhc
Confidence 568999999999999998754
No 10
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=22.69 E-value=35 Score=16.84 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=12.7
Q ss_pred CCccccHHHHHHHHH
Q 029210 129 GNVFKNKRVLMESIH 143 (197)
Q Consensus 129 Gn~Fknk~~L~e~I~ 143 (197)
|..|.+.+.|..|+.
T Consensus 11 ~k~f~~~~~l~~H~~ 25 (29)
T 2ab3_A 11 GRSFNDRRKLNRHKK 25 (29)
T ss_dssp CEEESSHHHHHHHHG
T ss_pred cCccCCHHHHHHHHH
Confidence 678999999999863
No 11
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.14 E-value=53 Score=16.08 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=13.4
Q ss_pred CCccccHHHHHHHHHH
Q 029210 129 GNVFKNKRVLMESIHK 144 (197)
Q Consensus 129 Gn~Fknk~~L~e~I~k 144 (197)
|..|.+...|..|+..
T Consensus 10 ~~~f~~~~~l~~H~~~ 25 (30)
T 2m0d_A 10 GRSFSDPTSKMRHLET 25 (30)
T ss_dssp CCEESCHHHHHHHHHT
T ss_pred CcccCCHHHHHHHHHH
Confidence 6789999999999753
No 12
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=21.03 E-value=66 Score=15.68 Aligned_cols=16 Identities=13% Similarity=0.187 Sum_probs=13.6
Q ss_pred CCccccHHHHHHHHHH
Q 029210 129 GNVFKNKRVLMESIHK 144 (197)
Q Consensus 129 Gn~Fknk~~L~e~I~k 144 (197)
|..|.+...|..|+..
T Consensus 9 ~~~f~~~~~l~~H~~~ 24 (29)
T 1ard_A 9 TRAFARQEHLKRHYRS 24 (29)
T ss_dssp CCBCSSHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHH
Confidence 7789999999999754
No 13
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=20.85 E-value=59 Score=16.55 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=13.1
Q ss_pred CCccccHHHHHHHHH
Q 029210 129 GNVFKNKRVLMESIH 143 (197)
Q Consensus 129 Gn~Fknk~~L~e~I~ 143 (197)
|-.|.+...|..|+.
T Consensus 11 ~k~f~~~~~L~~H~~ 25 (31)
T 1sp2_A 11 GKRFTRSDELQRHKR 25 (31)
T ss_dssp CCBCSSHHHHHHHHT
T ss_pred CcccCCHhHHHHHHH
Confidence 778999999999974
No 14
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=20.10 E-value=51 Score=16.14 Aligned_cols=16 Identities=13% Similarity=-0.043 Sum_probs=13.4
Q ss_pred CCccccHHHHHHHHHH
Q 029210 129 GNVFKNKRVLMESIHK 144 (197)
Q Consensus 129 Gn~Fknk~~L~e~I~k 144 (197)
|..|.+...|..|+..
T Consensus 9 ~k~f~~~~~l~~H~~~ 24 (30)
T 1klr_A 9 EFRSADSSNLKTHIKT 24 (30)
T ss_dssp SCCCSCSHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHH
Confidence 6789999999999754
Done!