BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029211
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XG2|B Chain B, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 153
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 16/132 (12%)
Query: 27 RNNFVRDACSVTTYRDLCIHSLAPFSKSARNSPGKWARAGVSVTIGEVKNVTQFLYKLKR 86
N+ + + C T LC+ +L +SA + + + K ++ + L
Sbjct: 2 ENHLISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTN 61
Query: 87 RNL---MRGRNRLALLDCIECFQETIDELHMSLGILRR-LSAREFDRQMDDLTTFVSAAL 142
+ ++GR C E + + ID SLG ++ L++ +++ L + SAA
Sbjct: 62 QATDPKLKGRYET----CSENYADAID----SLGQAKQFLTSGDYNS----LNIYASAAF 109
Query: 143 TYEDTCLDGFEG 154
TC D FEG
Sbjct: 110 DGAGTCEDSFEG 121
>pdb|2VC6|A Chain A, Structure Of Mosa From S. Meliloti With Pyruvate Bound
pdb|2VC6|B Chain B, Structure Of Mosa From S. Meliloti With Pyruvate Bound
Length = 292
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 82 YKLKRRNLMRGRNRLALLDCIECFQETIDELHMSLGIL 119
Y L+R MRG RL L+ FQE ID+ GIL
Sbjct: 254 YALQRLGRMRGDLRLPLVTISPSFQEEIDDAMRHAGIL 291
>pdb|4DCK|C Chain C, Crystal Structure Of The C-Terminus Of Voltage-Gated
Sodium Channel In Complex With Fgf13 And Cam
Length = 192
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 16 LAKSGESASGNR-------NNFVRDACSVTTYRDLCIHSLAPFSKSARNSPGK 61
L K GE GN +F+ V Y++ +H L FS+S +P K
Sbjct: 120 LNKEGEIMKGNHVKKNKPAAHFLPKPLKVAMYKEPSLHDLTEFSRSGSGTPTK 172
>pdb|3HBW|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Homologous Factor 2a (Fhf2a), Also Referred To As
Fibroblast Growth Factor 13a (Fgf13a)
pdb|3HBW|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Homologous Factor 2a (Fhf2a), Also Referred To As
Fibroblast Growth Factor 13a (Fgf13a)
Length = 193
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 16 LAKSGESASGNR-------NNFVRDACSVTTYRDLCIHSLAPFSKSARNSPGK 61
L K GE GN +F+ V Y++ +H L FS+S +P K
Sbjct: 121 LNKEGEIMKGNHVKKNKPAAHFLPKPLKVAMYKEPSLHDLTEFSRSGSGTPTK 173
>pdb|4EY4|A Chain A, Crystal Structure Of Recombinant Human
Acetylcholinesterase In The Apo State
pdb|4EY4|B Chain B, Crystal Structure Of Recombinant Human
Acetylcholinesterase In The Apo State
pdb|4EY5|A Chain A, Crystal Structure Of Recombinant Human
Acetylcholinesterase In Complex With (-)-Huperzine A
pdb|4EY5|B Chain B, Crystal Structure Of Recombinant Human
Acetylcholinesterase In Complex With (-)-Huperzine A
pdb|4EY6|A Chain A, Crystal Structure Of Recombinant Human
Acetylcholinesterase In Complex With (-)-Galantamine
pdb|4EY6|B Chain B, Crystal Structure Of Recombinant Human
Acetylcholinesterase In Complex With (-)-Galantamine
pdb|4EY7|A Chain A, Crystal Structure Of Recombinant Human
Acetylcholinesterase In Complex With Donepezil
pdb|4EY7|B Chain B, Crystal Structure Of Recombinant Human
Acetylcholinesterase In Complex With Donepezil
pdb|4EY8|A Chain A, Crystal Structure Of Recombinant Human
Acetylcholinesterase In Complex With Fasciculin-2
Length = 542
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 133 DLTTFVSAALTYEDTCLDGFEGQK 156
D TTF S Y DT GFEG +
Sbjct: 60 DATTFQSVCYQYVDTLYPGFEGTE 83
>pdb|3LII|A Chain A, Recombinant Human Acetylcholinesterase
pdb|3LII|B Chain B, Recombinant Human Acetylcholinesterase
Length = 540
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 133 DLTTFVSAALTYEDTCLDGFEGQK 156
D TTF S Y DT GFEG +
Sbjct: 58 DATTFQSVCYQYVDTLYPGFEGTE 81
>pdb|1B41|A Chain A, Human Acetylcholinesterase Complexed With Fasciculin-Ii,
Glycosylated Protein
Length = 539
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 133 DLTTFVSAALTYEDTCLDGFEGQK 156
D TTF S Y DT GFEG +
Sbjct: 57 DATTFQSVCYQYVDTLYPGFEGTE 80
>pdb|1F8U|A Chain A, Crystal Structure Of Mutant E202q Of Human
Acetylcholinesterase Complexed With Green Mamba Venom
Peptide Fasciculin-ii
Length = 583
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 133 DLTTFVSAALTYEDTCLDGFEGQK 156
D TTF S Y DT GFEG +
Sbjct: 61 DATTFQSVCYQYVDTLYPGFEGTE 84
>pdb|2X8B|A Chain A, Crystal Structure Of Human Acetylcholinesterase Inhibited
By Aged Tabun And Complexed With Fasciculin-Ii
Length = 583
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 133 DLTTFVSAALTYEDTCLDGFEGQK 156
D TTF S Y DT GFEG +
Sbjct: 61 DATTFQSVCYQYVDTLYPGFEGTE 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,702,826
Number of Sequences: 62578
Number of extensions: 158551
Number of successful extensions: 347
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 340
Number of HSP's gapped (non-prelim): 10
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)