Query 029211
Match_columns 197
No_of_seqs 134 out of 850
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 15:03:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029211.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029211hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xg2_B Pectinesterase inhibito 100.0 3.2E-35 1.1E-39 223.5 15.2 149 28-185 3-151 (153)
2 1x91_A Invertase/pectin methyl 100.0 3.5E-35 1.2E-39 223.5 12.8 149 26-185 3-151 (153)
3 2cj4_A Invertase inhibitor; pr 100.0 7.4E-34 2.5E-38 215.6 13.4 147 26-184 2-149 (150)
4 2l7n_A Talin-1; integrin, bund 42.4 1E+02 0.0035 22.9 8.5 60 61-121 76-136 (168)
5 3cjh_B Mitochondrial import in 42.2 43 0.0015 20.4 4.3 30 89-118 33-62 (64)
6 2bsk_B Mitochondrial import in 36.2 75 0.0026 20.8 5.1 33 89-121 42-74 (90)
7 2bsk_A Mitochondrial import in 35.7 78 0.0027 20.7 5.1 33 89-121 40-72 (89)
8 3dxr_B Mitochondrial import in 34.4 62 0.0021 21.6 4.4 31 90-120 56-86 (95)
9 3dxr_A Mitochondrial import in 31.7 79 0.0027 20.7 4.6 32 90-121 50-81 (89)
10 1r7c_A Genome polyprotein; mem 26.8 31 0.001 18.2 1.4 12 131-142 16-27 (31)
11 3cjh_A Mitochondrial import in 25.8 71 0.0024 19.5 3.3 31 90-120 25-55 (64)
No 1
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=100.00 E-value=3.2e-35 Score=223.48 Aligned_cols=149 Identities=22% Similarity=0.340 Sum_probs=137.1
Q ss_pred hHHHHhcCCCCCChhhHHhhhccCcccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH
Q 029211 28 NNFVRDACSVTTYRDLCIHSLAPFSKSARNSPGKWARAGVSVTIGEVKNVTQFLYKLKRRNLMRGRNRLALLDCIECFQE 107 (197)
Q Consensus 28 ~~~v~~~C~~T~~p~~C~~sL~~~p~s~~~d~~~l~~~~i~~a~~~a~~~~~~~~~l~~~~~~~~~~~~al~dC~ely~~ 107 (197)
.+.|+.+|++|+||++|+++|.++|++...|+++|+++++++++.++..+..++.++.+. ..++..+.+|+||.++|++
T Consensus 3 ~~~i~~~C~~T~~~~~C~~sL~~~~~~~~~~~~~l~~~ai~~~~~~a~~~~~~~~~l~~~-~~~~~~~~al~dC~e~y~~ 81 (153)
T 1xg2_B 3 NHLISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQ-ATDPKLKGRYETCSENYAD 81 (153)
T ss_dssp CHHHHHHGGGSSCHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhcCCCChHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999988778999999999999999999999999998764 3578999999999999999
Q ss_pred HHHHHHHHHHHHhhcchhhhhhhhhhHHHHHHhhhcCcchHhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029211 108 TIDELHMSLGILRRLSAREFDRQMDDLTTFVSAALTYEDTCLDGFEGQKATQVDLLKKRVLKTTYLASNALALINKLA 185 (197)
Q Consensus 108 a~~~L~~a~~~l~~~~~~~~~~~~~d~~twLSaalt~~~TC~dgf~~~~~~~~~~l~~~~~~~~~l~snaLaii~~~~ 185 (197)
++++|++++.+|..+ .++|+++|||+|++|++||+|||.+.+ +++++|...+.++.+|++|+|+|++.+.
T Consensus 82 a~~~L~~a~~~l~~~-------~~~d~~t~lSaAlt~~~tC~dgf~~~~-~~~~~l~~~~~~~~~l~s~aLai~~~l~ 151 (153)
T 1xg2_B 82 AIDSLGQAKQFLTSG-------DYNSLNIYASAAFDGAGTCEDSFEGPP-NIPTQLHQADLKLEDLCDIVLVISNLLP 151 (153)
T ss_dssp HHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHHHHHCCSSS-CCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhC-------CHHHHHHHHHHHhcccchHHHHhccCC-CCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999863 478999999999999999999998864 4678899999999999999999999875
No 2
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=100.00 E-value=3.5e-35 Score=223.53 Aligned_cols=149 Identities=21% Similarity=0.238 Sum_probs=134.1
Q ss_pred chhHHHHhcCCCCCChhhHHhhhccCcccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHH
Q 029211 26 NRNNFVRDACSVTTYRDLCIHSLAPFSKSARNSPGKWARAGVSVTIGEVKNVTQFLYKLKRRNLMRGRNRLALLDCIECF 105 (197)
Q Consensus 26 ~~~~~v~~~C~~T~~p~~C~~sL~~~p~s~~~d~~~l~~~~i~~a~~~a~~~~~~~~~l~~~~~~~~~~~~al~dC~ely 105 (197)
+..+.|+.+|++|+||++|+++| .|.+...|+++|+++++++++.++..+..++.++.+. ..++..+.+|+||.|+|
T Consensus 3 a~~~~i~~~C~~T~~~~~C~~sL--~p~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~l~~~-~~~~~~~~al~dC~e~y 79 (153)
T 1x91_A 3 MDSSEMSTICDKTLNPSFCLKFL--NTKFASANLQALAKTTLDSTQARATQTLKKLQSIIDG-GVDPRSKLAYRSCVDEY 79 (153)
T ss_dssp --CCSTTTGGGGSSCHHHHHHHH--HHTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCChhHHHHHh--CcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHH
Confidence 34568999999999999999999 5665568999999999999999999999999998765 35899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcchhhhhhhhhhHHHHHHhhhcCcchHhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029211 106 QETIDELHMSLGILRRLSAREFDRQMDDLTTFVSAALTYEDTCLDGFEGQKATQVDLLKKRVLKTTYLASNALALINKLA 185 (197)
Q Consensus 106 ~~a~~~L~~a~~~l~~~~~~~~~~~~~d~~twLSaalt~~~TC~dgf~~~~~~~~~~l~~~~~~~~~l~snaLaii~~~~ 185 (197)
++++++|++++.++..+ .++|+++|||+|++|++||+|||++.+ +++++|...+.++.+|++|+|+|++.+.
T Consensus 80 ~~a~~~L~~a~~~l~~~-------~~~d~~t~lSaAlt~~~tC~dgf~~~~-~~~~~l~~~~~~~~~l~s~aLai~~~l~ 151 (153)
T 1x91_A 80 ESAIGNLEEAFEHLASG-------DGMGMNMKVSAALDGADTCLDDVKRLR-SVDSSVVNNSKTIKNLCGIALVISNMLP 151 (153)
T ss_dssp HHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHccHhHHHHHhccCC-CCcCHHHHHhHHHHHHHHHHHHHHHHcc
Confidence 99999999999999863 479999999999999999999998864 4678899999999999999999999865
No 3
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Probab=100.00 E-value=7.4e-34 Score=215.60 Aligned_cols=147 Identities=16% Similarity=0.185 Sum_probs=132.1
Q ss_pred chhHHHHhcCCCCCChhhHHhhhccCcccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHH
Q 029211 26 NRNNFVRDACSVTTYRDLCIHSLAPFSKSARNSPGKWARAGVSVTIGEVKNVTQFLYKLKRRNLMRGRNRLALLDCIECF 105 (197)
Q Consensus 26 ~~~~~v~~~C~~T~~p~~C~~sL~~~p~s~~~d~~~l~~~~i~~a~~~a~~~~~~~~~l~~~~~~~~~~~~al~dC~ely 105 (197)
+..+.|+.+|++|+||++|+++|.++|++...|+.+|+++++++++.++..+..++.++.+. ..++..+.+|+||.|+|
T Consensus 2 a~~~~I~~~C~~T~~~~~C~~sL~~~~~s~~ad~~~la~~ai~~~~~~a~~~~~~i~~l~~~-~~~~~~~~al~dC~e~y 80 (150)
T 2cj4_A 2 AMNNLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKLRHS-NPPAAWKGPLKNCAFSY 80 (150)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHTSGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CCCGGGHHHHHHHHHHH
T ss_pred CchHHHHHHHcCCCCccHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHH
Confidence 35679999999999999999999999988778999999999999999999999999998754 44688999999999999
Q ss_pred HHHH-HHHHHHHHHHhhcchhhhhhhhhhHHHHHHhhhcCcchHhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029211 106 QETI-DELHMSLGILRRLSAREFDRQMDDLTTFVSAALTYEDTCLDGFEGQKATQVDLLKKRVLKTTYLASNALALINKL 184 (197)
Q Consensus 106 ~~a~-~~L~~a~~~l~~~~~~~~~~~~~d~~twLSaalt~~~TC~dgf~~~~~~~~~~l~~~~~~~~~l~snaLaii~~~ 184 (197)
++++ ++|++++.++..+ .++++++|||+|++|++||+|||++. +++|..++.++.+|++|+|+|++.+
T Consensus 81 ~~a~~~~L~~a~~~l~~~-------~~~~~~t~lsaAlt~~~tC~dgf~~~----~~pl~~~~~~~~~l~s~aLaii~~l 149 (150)
T 2cj4_A 81 KVILTASLPEAIEALTKG-------DPKFAEDGMVGSSGDAQECEEYFKGS----KSPFSALNIAVHELSDVGRAIVRNL 149 (150)
T ss_dssp HHHHHTHHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHHHHTTTTS----CCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHHHHhhCCC----CCccHHHHHHHHHHHHHHHHHHHhh
Confidence 9999 7999999999863 57899999999999999999999853 3458889999999999999999865
No 4
>2l7n_A Talin-1; integrin, bundle, focal adhesion, structural protein; NMR {Mus musculus}
Probab=42.45 E-value=1e+02 Score=22.86 Aligned_cols=60 Identities=7% Similarity=0.011 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhHH-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 029211 61 KWARAGVSVTIGEVKNVTQFLYKLKRRNLMRGRNRL-ALLDCIECFQETIDELHMSLGILRR 121 (197)
Q Consensus 61 ~l~~~~i~~a~~~a~~~~~~~~~l~~~~~~~~~~~~-al~dC~ely~~a~~~L~~a~~~l~~ 121 (197)
.+.-++-+-+...++.....++.+... ..++.... -+..+.+..+++..-++++...+.+
T Consensus 76 ~y~g~aar~~A~aL~~lt~avrgvaat-t~d~~~q~~ll~~a~~V~~~s~~Li~ear~~~~~ 136 (168)
T 2l7n_A 76 NYAGIAARDVAGGLRSLAQAARGVAAL-TSDPAVQAIVLDTASDVLDKASSLIEEAKKASGH 136 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTBS
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 355555455555555555555665543 34555444 4555557777777777877777654
No 5
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=42.22 E-value=43 Score=20.43 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=24.8
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 029211 89 LMRGRNRLALLDCIECFQETIDELHMSLGI 118 (197)
Q Consensus 89 ~~~~~~~~al~dC~ely~~a~~~L~~a~~~ 118 (197)
..+..+..|+..|.+-|-++-..+.+....
T Consensus 33 ~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~ 62 (64)
T 3cjh_B 33 NLSSQEEQCLSNCVNRFLDTNIRIVNGLQN 62 (64)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCChhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357888999999999999998888766554
No 6
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=36.17 E-value=75 Score=20.81 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=28.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029211 89 LMRGRNRLALLDCIECFQETIDELHMSLGILRR 121 (197)
Q Consensus 89 ~~~~~~~~al~dC~ely~~a~~~L~~a~~~l~~ 121 (197)
..+..+..|+..|.+-|-++-..+.+.+..+..
T Consensus 42 ~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~ 74 (90)
T 2bsk_B 42 ELSKGESVCLDRCVSKYLDIHERMGKKLTELSM 74 (90)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCChhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888999999999999999999888877664
No 7
>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=35.67 E-value=78 Score=20.74 Aligned_cols=33 Identities=6% Similarity=0.173 Sum_probs=28.6
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029211 89 LMRGRNRLALLDCIECFQETIDELHMSLGILRR 121 (197)
Q Consensus 89 ~~~~~~~~al~dC~ely~~a~~~L~~a~~~l~~ 121 (197)
..+..+..|+..|.+-|-++-..+.+....+..
T Consensus 40 ~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~ 72 (89)
T 2bsk_A 40 EVKPEETTCSEHCLQKYLKMTQRISMRFQEYHI 72 (89)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888999999999999999999888887764
No 8
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=34.37 E-value=62 Score=21.63 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=26.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029211 90 MRGRNRLALLDCIECFQETIDELHMSLGILR 120 (197)
Q Consensus 90 ~~~~~~~al~dC~ely~~a~~~L~~a~~~l~ 120 (197)
.+..+..|+..|.+-|-++-..+.+.+..+.
T Consensus 56 L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~~ 86 (95)
T 3dxr_B 56 LNKNESSCLDRCVAKYFETNVQVGENMQKMG 86 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999988877655
No 9
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=31.73 E-value=79 Score=20.68 Aligned_cols=32 Identities=9% Similarity=0.284 Sum_probs=27.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029211 90 MRGRNRLALLDCIECFQETIDELHMSLGILRR 121 (197)
Q Consensus 90 ~~~~~~~al~dC~ely~~a~~~L~~a~~~l~~ 121 (197)
.+..+..|+..|.+-|-++-..+...+..+..
T Consensus 50 L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~ 81 (89)
T 3dxr_A 50 LTNKEQTCIMKCSEKFLKHSERVGQRFQEQNA 81 (89)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999999999888777553
No 10
>1r7c_A Genome polyprotein; membrane anchor domain, HCV NS5A protein, structure, peptide, membrane protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 1r7d_A 1r7e_A 1r7f_A 1r7g_A
Probab=26.79 E-value=31 Score=18.21 Aligned_cols=12 Identities=33% Similarity=0.670 Sum_probs=9.4
Q ss_pred hhhHHHHHHhhh
Q 029211 131 MDDLTTFVSAAL 142 (197)
Q Consensus 131 ~~d~~twLSaal 142 (197)
..|.+|||+|-+
T Consensus 16 LsDfktWlkaki 27 (31)
T 1r7c_A 16 LSDFKTWLKAKL 27 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 468899998865
No 11
>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=25.81 E-value=71 Score=19.52 Aligned_cols=31 Identities=10% Similarity=0.139 Sum_probs=26.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029211 90 MRGRNRLALLDCIECFQETIDELHMSLGILR 120 (197)
Q Consensus 90 ~~~~~~~al~dC~ely~~a~~~L~~a~~~l~ 120 (197)
.+..+..|+..|.+-|-++-..+.+....+.
T Consensus 25 L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~ 55 (64)
T 3cjh_A 25 YATRNDACIDQCLAKYMRSWNVISKAYISRI 55 (64)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777889999999999999999887776544
Done!