BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029212
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IF2|A Chain A, Crystal Structure Of The Putative Dephospho-Coa Kinase
From Aquifex Aeolicus, Northeast Structural Genomics
Target Qr72.
pdb|2IF2|B Chain B, Crystal Structure Of The Putative Dephospho-Coa Kinase
From Aquifex Aeolicus, Northeast Structural Genomics
Target Qr72.
pdb|2IF2|C Chain C, Crystal Structure Of The Putative Dephospho-Coa Kinase
From Aquifex Aeolicus, Northeast Structural Genomics
Target Qr72
Length = 204
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 92/195 (47%), Gaps = 31/195 (15%)
Query: 4 VGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGE 63
+GLTG I GKSTV+ F+ V+DAD + +KG +++VV FG+ IL G
Sbjct: 4 IGLTGNIGCGKSTVAQXFRELGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGN 63
Query: 64 VDRSKLGQIVFSDSSKRQLLNGLL--APY-----------------------ISLGIFME 98
+DR KL IVF D K + L + A Y + G +
Sbjct: 64 IDRKKLADIVFKDEEKLRKLEEITHRALYKEIEKITKNLSEDTLFILEASLLVEKGTYKN 123
Query: 99 VLKLWI-----KGCKRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNE 153
KL + + CK + SEED R Q P++ K AD VI+N+G++++ +
Sbjct: 124 YDKLIVVYAPYEVCKERAIKRGXSEEDFERRWKKQXPIEEKVKYADYVIDNSGSIEETYK 183
Query: 154 QVRKVLFEIKR-PLN 167
QV+KV E+ R PL
Sbjct: 184 QVKKVYEELTRDPLE 198
>pdb|1JJV|A Chain A, Dephospho-Coa Kinase In Complex With Atp
Length = 206
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 59/89 (66%)
Query: 3 IVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNG 62
IVGLTGGI SGK+T++NLF VP+VDAD++AR+V+ K + K+V FG IL G
Sbjct: 4 IVGLTGGIGSGKTTIANLFTDLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQG 63
Query: 63 EVDRSKLGQIVFSDSSKRQLLNGLLAPYI 91
E++R+ L + VF+ + LN LL P I
Sbjct: 64 ELNRAALRERVFNHDEDKLWLNNLLHPAI 92
>pdb|1VHL|A Chain A, Crystal Structure Of Dephospho-Coa Kinase With
Adenosine-5'- Diphosphate
pdb|1VHL|B Chain B, Crystal Structure Of Dephospho-Coa Kinase With
Adenosine-5'- Diphosphate
pdb|1VHL|C Chain C, Crystal Structure Of Dephospho-Coa Kinase With
Adenosine-5'- Diphosphate
pdb|1VHT|A Chain A, Crystal Structure Of Dephospho-Coa Kinase With
Bis(Adenosine)-5'-Triphosphate
pdb|1VHT|B Chain B, Crystal Structure Of Dephospho-Coa Kinase With
Bis(Adenosine)-5'-Triphosphate
pdb|1VHT|C Chain C, Crystal Structure Of Dephospho-Coa Kinase With
Bis(Adenosine)-5'-Triphosphate
pdb|1VIY|A Chain A, Crystal Structure Of Dephospho-Coa Kinase
pdb|1VIY|B Chain B, Crystal Structure Of Dephospho-Coa Kinase
pdb|1VIY|C Chain C, Crystal Structure Of Dephospho-Coa Kinase
Length = 218
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 84/186 (45%), Gaps = 30/186 (16%)
Query: 3 IVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNG 62
IV LTGGI SGKSTV+N F + V+DADIIAR V++ G + FG +++ +G
Sbjct: 6 IVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADG 65
Query: 63 EVDRSKLGQIVFSDSSKRQLLNGLLAPYISLGIFMEVLK------LWI------------ 104
+ R L + +F++ ++ LN LL P I ++ + LW+
Sbjct: 66 TLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQQATSPYVLWVVPLLVENSLYKK 125
Query: 105 ------------KGCKRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLN 152
KR M RD + E + AQ + + AD VI+N G D +
Sbjct: 126 ANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQATREARLAVADDVIDNNGAPDAIA 185
Query: 153 EQVRKV 158
V ++
Sbjct: 186 SDVARL 191
>pdb|1T3H|A Chain A, X-Ray Structure Of Dephospho-Coa Kinase From E. Coli
Norteast Structural Genomics Consortium Target Er57
pdb|1T3H|B Chain B, X-Ray Structure Of Dephospho-Coa Kinase From E. Coli
Norteast Structural Genomics Consortium Target Er57
pdb|1T3H|C Chain C, X-Ray Structure Of Dephospho-Coa Kinase From E. Coli
Norteast Structural Genomics Consortium Target Er57
Length = 214
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 82/186 (44%), Gaps = 30/186 (16%)
Query: 3 IVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNG 62
IV LTGGI SGKSTV+N F + V+DADIIAR V++ G + FG + + +G
Sbjct: 4 IVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANXIAADG 63
Query: 63 EVDRSKLGQIVFSDSSKRQLLNGLLAPYISLGIFMEVLK------LWI------------ 104
+ R L + +F++ ++ LN LL P I ++ + LW+
Sbjct: 64 TLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQQATSPYVLWVVPLLVENSLYKK 123
Query: 105 ------------KGCKRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLN 152
KR RD + E + AQ + + AD VI+N G D +
Sbjct: 124 ANRVLVVDVSPETQLKRTXQRDDVTREHVEQILAAQATREARLAVADDVIDNNGAPDAIA 183
Query: 153 EQVRKV 158
V ++
Sbjct: 184 SDVARL 189
>pdb|1N3B|A Chain A, Crystal Structure Of Dephosphocoenzyme A Kinase From
Escherichia Coli
pdb|1N3B|B Chain B, Crystal Structure Of Dephosphocoenzyme A Kinase From
Escherichia Coli
pdb|1N3B|C Chain C, Crystal Structure Of Dephosphocoenzyme A Kinase From
Escherichia Coli
Length = 216
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 82/186 (44%), Gaps = 30/186 (16%)
Query: 3 IVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNG 62
IV LTGGI SGKSTV+N F + V+DADIIAR V++ G + FG + + +G
Sbjct: 4 IVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANXIAADG 63
Query: 63 EVDRSKLGQIVFSDSSKRQLLNGLLAPYISLGIFMEVLK------LWI------------ 104
+ R L + +F++ ++ LN LL P I ++ + LW+
Sbjct: 64 TLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQQATSPYVLWVVPLLVENSLYKK 123
Query: 105 ------------KGCKRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLN 152
KR RD + E + AQ + + AD VI+N G D +
Sbjct: 124 ANRVLVVDVSPETQLKRTXQRDDVTREHVEQILAAQATREARLAVADDVIDNNGAPDAIA 183
Query: 153 EQVRKV 158
V ++
Sbjct: 184 SDVARL 189
>pdb|4I1U|A Chain A, Apo Crystal Structure Of A Dephospho-Coa Kinase From
Burkholderia Vietnamiensis
pdb|4I1U|B Chain B, Apo Crystal Structure Of A Dephospho-Coa Kinase From
Burkholderia Vietnamiensis
pdb|4I1V|A Chain A, Crystal Structure Of A Dephospho-Coa Kinase From
Burkholderia Vietnamiensis Bound To Adp
pdb|4I1V|B Chain B, Crystal Structure Of A Dephospho-Coa Kinase From
Burkholderia Vietnamiensis Bound To Adp
Length = 210
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%)
Query: 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLP 60
M +GLTGGI SGK+TV++LF A +VD D+IA + + FG +
Sbjct: 9 MYAIGLTGGIGSGKTTVADLFAARGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAA 68
Query: 61 NGEVDRSKLGQIVFSDSSKRQLLNGLLAPYI 91
+G +DR+++ ++FSD R+ L + P I
Sbjct: 69 DGSLDRARMRALIFSDEDARRRLEAITHPLI 99
>pdb|1UF9|A Chain A, Crystal Structure Of Tt1252 From Thermus Thermophilus
pdb|1UF9|B Chain B, Crystal Structure Of Tt1252 From Thermus Thermophilus
pdb|1UF9|C Chain C, Crystal Structure Of Tt1252 From Thermus Thermophilus
Length = 203
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 35/179 (19%)
Query: 14 KSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIV 73
KSTV+ L ++ PV+D D +A + K++ F E ++ G +DR L ++V
Sbjct: 21 KSTVAALLRSWGYPVLDLDALAARARENKEEELKRL---FPEAVV--GGRLDRRALARLV 75
Query: 74 FSDSSKRQLLNGLLAPYISLG------------IFMEVLKLWIKG--------------- 106
FSD + + L ++ P + +F+E+ L+ KG
Sbjct: 76 FSDPERLKALEAVVHPEVRRLLXEELSRLEAPLVFLEIPLLFEKGWEGRLHGTLLVAAPL 135
Query: 107 ---CKRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEI 162
+R+ AR S E+ R AQ P + KR A V+ NTG+L+DL ++ VL E+
Sbjct: 136 EERVRRVXARSGLSREEVLARERAQXPEEEKRKRATWVLENTGSLEDLERALKAVLAEL 194
>pdb|2F6R|A Chain A, Crystal Structure Of Bifunctional Coenzyme A Synthase (coa
Synthase): (18044849) From Mus Musculus At 1.70 A
Resolution
Length = 281
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 33/162 (20%)
Query: 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLP 60
+ ++GLTG SGKS+V+ K ++D+D + G ++ VV AFG DIL
Sbjct: 75 LYVLGLTGISGSGKSSVAQRLKNLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHK 134
Query: 61 NGEVDRSKLGQIVFSDSSKRQLLNGLLAPYIS---------------------LGIFME- 98
+G ++R LG VF + + ++L ++ P I+ + +E
Sbjct: 135 DGTINRKVLGSRVFGNKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEA 194
Query: 99 -----VLKLW------IKGCKRLMARDRTSEEDARNRINAQM 129
V ++W + +R++ RD SE A++R+ +QM
Sbjct: 195 GWQSMVHEVWTVVIPETEAVRRIVERDGLSEAAAQSRLQSQM 236
>pdb|2GRJ|A Chain A, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|B Chain B, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|C Chain C, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|D Chain D, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|E Chain E, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|F Chain F, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|G Chain G, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|H Chain H, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
Length = 192
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 3 IVGLTGGISSGKSTVSNLFKAN-DVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPN 61
++G+TG I +GKSTV + K VV+ D I +VL++ +K+V FG + L +
Sbjct: 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVK---EKLVELFGGSV-LED 69
Query: 62 GEVDRSKLGQIVFSDSSKRQLLNGLLAP 89
G+V+R KL IVF + L L+ P
Sbjct: 70 GKVNRKKLAGIVFESRENLKKLELLVHP 97
>pdb|3JYV|C Chain C, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 188
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 57 ILLPNGEVDRSKLGQIVFSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCK 108
I+L V L + ++S K +LLNGL + G+ V++ KGC+
Sbjct: 79 IVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMESGAKGCE 130
>pdb|2PJU|A Chain A, Crystal Structure Of Propionate Catabolism Operon
Regulatory Protein Prpr
pdb|2PJU|B Chain B, Crystal Structure Of Propionate Catabolism Operon
Regulatory Protein Prpr
pdb|2PJU|C Chain C, Crystal Structure Of Propionate Catabolism Operon
Regulatory Protein Prpr
pdb|2PJU|D Chain D, Crystal Structure Of Propionate Catabolism Operon
Regulatory Protein Prpr
Length = 225
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 109 RLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQ 154
RL R +EEDAR +IN ++K N + V+ G + DL E+
Sbjct: 131 RLDQRSYITEEDARGQIN-----ELKANGTEAVV-GAGLITDLAEE 170
>pdb|1S1H|C Chain C, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i
Length = 192
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 57 ILLPNGEVDRSKLGQIVFSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCK 108
I+L V L + ++S K +LLNGL + G+ V++ KGC+
Sbjct: 83 IVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMESGAKGCE 134
>pdb|3IZB|B Chain B, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|C Chain C, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|C Chain C, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|D Chain D, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|D Chain D, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 240
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 69 LGQIVFSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCK 108
L + ++S K +LLNGL + G+ V++ KGC+
Sbjct: 96 LSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMESGAKGCE 135
>pdb|3TQC|A Chain A, Structure Of The Pantothenate Kinase (Coaa) From Coxiella
Burnetii
pdb|3TQC|B Chain B, Structure Of The Pantothenate Kinase (Coaa) From Coxiella
Burnetii
Length = 321
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 3 IVGLTGGISSGKSTVSNLFKA 23
I+G+ G ++ GKST S + KA
Sbjct: 94 IIGIAGSVAVGKSTTSRVLKA 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,337,415
Number of Sequences: 62578
Number of extensions: 211101
Number of successful extensions: 521
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 502
Number of HSP's gapped (non-prelim): 22
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)